Multiple sequence alignment - TraesCS1B01G165600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G165600 chr1B 100.000 4222 0 0 1 4222 288812407 288808186 0.000000e+00 7797.0
1 TraesCS1B01G165600 chr1B 92.553 188 14 0 4035 4222 33822348 33822161 1.930000e-68 270.0
2 TraesCS1B01G165600 chr1D 95.628 3774 91 18 293 4035 200880793 200877063 0.000000e+00 5987.0
3 TraesCS1B01G165600 chr1D 94.719 303 11 3 1 303 200882730 200882433 2.300000e-127 466.0
4 TraesCS1B01G165600 chr1D 81.513 119 18 3 4093 4209 257452 257568 1.250000e-15 95.3
5 TraesCS1B01G165600 chr1A 94.998 2439 69 18 1600 4035 254385781 254383393 0.000000e+00 3779.0
6 TraesCS1B01G165600 chr1A 90.705 1603 86 26 1 1564 254387353 254385775 0.000000e+00 2076.0
7 TraesCS1B01G165600 chr2B 93.122 189 13 0 4034 4222 66195738 66195550 1.160000e-70 278.0
8 TraesCS1B01G165600 chr6B 92.593 189 14 0 4034 4222 301576208 301576020 5.380000e-69 272.0
9 TraesCS1B01G165600 chr3B 91.848 184 15 0 4039 4222 556684746 556684563 1.510000e-64 257.0
10 TraesCS1B01G165600 chr3B 87.629 194 23 1 4030 4222 88406974 88406781 1.530000e-54 224.0
11 TraesCS1B01G165600 chr3B 74.862 362 59 18 1782 2118 620183562 620183916 7.360000e-28 135.0
12 TraesCS1B01G165600 chr4D 75.219 343 73 11 1976 2315 477582436 477582103 7.310000e-33 152.0
13 TraesCS1B01G165600 chr3D 81.564 179 33 0 4035 4213 19934269 19934091 9.460000e-32 148.0
14 TraesCS1B01G165600 chr3D 79.592 196 39 1 1976 2171 466281731 466281925 5.690000e-29 139.0
15 TraesCS1B01G165600 chr4B 80.769 182 32 3 1959 2139 603168913 603168734 5.690000e-29 139.0
16 TraesCS1B01G165600 chr4B 77.174 184 34 8 4035 4215 113982492 113982314 2.690000e-17 100.0
17 TraesCS1B01G165600 chr3A 80.226 177 35 0 1976 2152 609474841 609475017 2.650000e-27 134.0
18 TraesCS1B01G165600 chr5A 82.258 124 20 2 4035 4157 414053275 414053153 5.770000e-19 106.0
19 TraesCS1B01G165600 chr5A 88.235 51 4 2 999 1048 87935120 87935071 4.560000e-05 60.2
20 TraesCS1B01G165600 chr5D 86.275 51 5 2 999 1048 94028566 94028517 2.000000e-03 54.7
21 TraesCS1B01G165600 chr5B 86.275 51 5 2 999 1048 101325298 101325249 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G165600 chr1B 288808186 288812407 4221 True 7797.0 7797 100.0000 1 4222 1 chr1B.!!$R2 4221
1 TraesCS1B01G165600 chr1D 200877063 200882730 5667 True 3226.5 5987 95.1735 1 4035 2 chr1D.!!$R1 4034
2 TraesCS1B01G165600 chr1A 254383393 254387353 3960 True 2927.5 3779 92.8515 1 4035 2 chr1A.!!$R1 4034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 2007 1.002315 CCCACCCTTTTTGATGGCTTG 59.998 52.381 0.00 0.0 0.00 4.01 F
1179 2872 0.895559 CACAGAAGAAGGCCAACCCC 60.896 60.000 5.01 0.0 36.11 4.95 F
1254 2965 0.548682 ATGGTGACCCTGAGAAGGCT 60.549 55.000 0.00 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 2882 0.327924 TCATCATCACCACCACCACC 59.672 55.0 0.0 0.0 0.00 4.61 R
2702 4419 0.037605 AAAGTTGAGGTCCTACGCCG 60.038 55.0 0.0 0.0 0.00 6.46 R
3239 4956 0.175989 CTAAAGACGGGACAGCCTCC 59.824 60.0 0.0 0.0 38.55 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 131 9.520204 TCTAAAAACTGCAATCTCAAAAAGAAG 57.480 29.630 0.00 0.00 37.61 2.85
121 133 8.776376 AAAAACTGCAATCTCAAAAAGAAGAA 57.224 26.923 0.00 0.00 37.61 2.52
209 222 1.668101 AAGAGACGGCCCTTAGAGCG 61.668 60.000 0.00 0.00 0.00 5.03
303 316 4.421479 CCCGTCAAGTCGCGCTCT 62.421 66.667 5.56 0.15 0.00 4.09
342 2007 1.002315 CCCACCCTTTTTGATGGCTTG 59.998 52.381 0.00 0.00 0.00 4.01
383 2053 7.012515 TCGGCAATACGATGTTTGGTATAAATT 59.987 33.333 0.00 0.00 38.06 1.82
426 2096 5.621329 CGGAAATAAAAGCGAAATCCCTTGT 60.621 40.000 0.00 0.00 0.00 3.16
533 2208 1.228367 CTGCTTCAGGTTGGGCACT 60.228 57.895 0.00 0.00 0.00 4.40
662 2355 2.483889 CGCTTTATCTCCAGGTTCTCCC 60.484 54.545 0.00 0.00 0.00 4.30
868 2561 1.813859 CCGACGACATCTTGGGCTA 59.186 57.895 0.00 0.00 0.00 3.93
892 2585 4.202535 CCCTTTCCCCGCCTAGTATTATTT 60.203 45.833 0.00 0.00 0.00 1.40
1070 2763 3.145551 CATGCCCAGGAAGCCAGC 61.146 66.667 0.00 0.00 0.00 4.85
1179 2872 0.895559 CACAGAAGAAGGCCAACCCC 60.896 60.000 5.01 0.00 36.11 4.95
1180 2873 1.675641 CAGAAGAAGGCCAACCCCG 60.676 63.158 5.01 0.00 36.11 5.73
1181 2874 3.062466 GAAGAAGGCCAACCCCGC 61.062 66.667 5.01 0.00 36.11 6.13
1254 2965 0.548682 ATGGTGACCCTGAGAAGGCT 60.549 55.000 0.00 0.00 0.00 4.58
1380 3091 5.062934 CCACAGCAATGCATTTTGTTCATAG 59.937 40.000 18.89 10.50 0.00 2.23
1393 3104 9.177304 CATTTTGTTCATAGCATATAAGCAGTG 57.823 33.333 2.37 0.97 36.85 3.66
1406 3118 3.923017 AAGCAGTGCCTTGTTATGTTC 57.077 42.857 12.58 0.00 0.00 3.18
1422 3134 7.548967 TGTTATGTTCGACACTATGTATGGAA 58.451 34.615 0.00 0.00 0.00 3.53
1466 3181 4.025040 TGACCATCTTGTGCTGATTTCT 57.975 40.909 0.00 0.00 0.00 2.52
1479 3194 9.625747 TTGTGCTGATTTCTTTGGATGTATATA 57.374 29.630 0.00 0.00 0.00 0.86
1570 3285 6.778834 ATGAATGTGGTTAAAGATGCATCA 57.221 33.333 27.81 5.22 0.00 3.07
1577 3292 6.015603 TGTGGTTAAAGATGCATCATTCAACA 60.016 34.615 27.81 19.19 0.00 3.33
1622 3338 9.681692 TGCTTAATGACACATATTAATTCATGC 57.318 29.630 0.00 0.00 31.66 4.06
1726 3442 5.294552 CCATAGAAGCTACAGTTTTACCTGC 59.705 44.000 0.00 0.00 35.83 4.85
2205 3922 6.137794 AGAAGGATATACAGTGTCAAGTCG 57.862 41.667 0.00 0.00 0.00 4.18
2547 4264 9.322769 CTATACCAGGAACTAATACTACCCATT 57.677 37.037 0.00 0.00 36.02 3.16
2670 4387 1.954528 CAACAAGGTCAGCTGGCAG 59.045 57.895 21.89 10.94 0.00 4.85
2702 4419 1.135575 GCTGCCTCAAATGTAGTGCAC 60.136 52.381 9.40 9.40 0.00 4.57
2900 4617 1.920835 GCCTGTGAGGACTTCCCCT 60.921 63.158 0.00 0.00 37.67 4.79
3239 4956 1.506493 AAGCAGCACTCTCAAAGTCG 58.494 50.000 0.00 0.00 35.45 4.18
3282 4999 2.746277 GCGGGCTTCGTGGACAAT 60.746 61.111 2.46 0.00 41.72 2.71
3283 5000 1.448893 GCGGGCTTCGTGGACAATA 60.449 57.895 2.46 0.00 41.72 1.90
3284 5001 1.429148 GCGGGCTTCGTGGACAATAG 61.429 60.000 2.46 0.00 41.72 1.73
3285 5002 0.810031 CGGGCTTCGTGGACAATAGG 60.810 60.000 0.00 0.00 0.00 2.57
3286 5003 0.539986 GGGCTTCGTGGACAATAGGA 59.460 55.000 0.00 0.00 0.00 2.94
3287 5004 1.653151 GGCTTCGTGGACAATAGGAC 58.347 55.000 0.00 0.00 0.00 3.85
3478 5195 5.814705 GCAGATGCTAGTAATCTTTGTCACT 59.185 40.000 7.19 0.00 38.21 3.41
3741 5458 1.215924 ACTAGGGACTACTCTCCAGCC 59.784 57.143 0.00 0.00 41.75 4.85
3868 5601 2.484264 CTGATCGTCAAGGGTTTGAACC 59.516 50.000 4.29 4.29 44.49 3.62
3929 5662 0.179119 GTAACGATCTGTCCCGGGTG 60.179 60.000 22.86 12.40 0.00 4.61
3930 5663 0.612732 TAACGATCTGTCCCGGGTGT 60.613 55.000 22.86 6.02 0.00 4.16
3931 5664 2.167398 AACGATCTGTCCCGGGTGTG 62.167 60.000 22.86 11.63 0.00 3.82
3932 5665 2.584608 GATCTGTCCCGGGTGTGG 59.415 66.667 22.86 9.68 0.00 4.17
3933 5666 2.203938 ATCTGTCCCGGGTGTGGT 60.204 61.111 22.86 4.73 0.00 4.16
3934 5667 2.521958 GATCTGTCCCGGGTGTGGTG 62.522 65.000 22.86 6.37 0.00 4.17
3935 5668 4.329545 CTGTCCCGGGTGTGGTGG 62.330 72.222 22.86 1.18 0.00 4.61
3936 5669 4.882396 TGTCCCGGGTGTGGTGGA 62.882 66.667 22.86 0.00 0.00 4.02
3937 5670 4.324991 GTCCCGGGTGTGGTGGAC 62.325 72.222 22.86 4.37 40.40 4.02
3940 5673 4.016706 CCGGGTGTGGTGGACCTC 62.017 72.222 0.00 0.00 36.82 3.85
3941 5674 3.238497 CGGGTGTGGTGGACCTCA 61.238 66.667 0.00 0.00 37.19 3.86
3942 5675 2.592993 CGGGTGTGGTGGACCTCAT 61.593 63.158 3.99 0.00 41.01 2.90
3943 5676 1.299976 GGGTGTGGTGGACCTCATC 59.700 63.158 3.99 3.48 41.01 2.92
3944 5677 1.201429 GGGTGTGGTGGACCTCATCT 61.201 60.000 10.23 0.00 41.01 2.90
3945 5678 0.693049 GGTGTGGTGGACCTCATCTT 59.307 55.000 3.99 0.00 41.01 2.40
3946 5679 1.073923 GGTGTGGTGGACCTCATCTTT 59.926 52.381 3.99 0.00 41.01 2.52
3947 5680 2.489073 GGTGTGGTGGACCTCATCTTTT 60.489 50.000 3.99 0.00 41.01 2.27
3948 5681 2.554032 GTGTGGTGGACCTCATCTTTTG 59.446 50.000 3.99 0.00 41.01 2.44
3949 5682 1.541588 GTGGTGGACCTCATCTTTTGC 59.458 52.381 0.00 0.00 36.82 3.68
3950 5683 0.804989 GGTGGACCTCATCTTTTGCG 59.195 55.000 0.00 0.00 0.00 4.85
3951 5684 0.804989 GTGGACCTCATCTTTTGCGG 59.195 55.000 0.00 0.00 36.21 5.69
3952 5685 0.690192 TGGACCTCATCTTTTGCGGA 59.310 50.000 0.00 0.00 34.14 5.54
3953 5686 1.281867 TGGACCTCATCTTTTGCGGAT 59.718 47.619 0.00 0.00 34.14 4.18
3983 5716 1.034292 GGGAACATGCTGGAGCTTCC 61.034 60.000 8.85 8.85 40.26 3.46
4017 5750 1.861982 TGTGAGGGGTTAGCCTACTC 58.138 55.000 11.84 11.84 38.39 2.59
4035 5768 1.686587 CTCAGTGTGGTGTAGGTGTGA 59.313 52.381 0.00 0.00 0.00 3.58
4036 5769 1.686587 TCAGTGTGGTGTAGGTGTGAG 59.313 52.381 0.00 0.00 0.00 3.51
4037 5770 1.686587 CAGTGTGGTGTAGGTGTGAGA 59.313 52.381 0.00 0.00 0.00 3.27
4038 5771 1.964223 AGTGTGGTGTAGGTGTGAGAG 59.036 52.381 0.00 0.00 0.00 3.20
4039 5772 1.687123 GTGTGGTGTAGGTGTGAGAGT 59.313 52.381 0.00 0.00 0.00 3.24
4040 5773 1.686587 TGTGGTGTAGGTGTGAGAGTG 59.313 52.381 0.00 0.00 0.00 3.51
4041 5774 1.000955 GTGGTGTAGGTGTGAGAGTGG 59.999 57.143 0.00 0.00 0.00 4.00
4042 5775 1.133294 TGGTGTAGGTGTGAGAGTGGA 60.133 52.381 0.00 0.00 0.00 4.02
4043 5776 2.180276 GGTGTAGGTGTGAGAGTGGAT 58.820 52.381 0.00 0.00 0.00 3.41
4044 5777 2.093973 GGTGTAGGTGTGAGAGTGGATG 60.094 54.545 0.00 0.00 0.00 3.51
4045 5778 2.563179 GTGTAGGTGTGAGAGTGGATGT 59.437 50.000 0.00 0.00 0.00 3.06
4046 5779 2.826128 TGTAGGTGTGAGAGTGGATGTC 59.174 50.000 0.00 0.00 0.00 3.06
4047 5780 1.270907 AGGTGTGAGAGTGGATGTCC 58.729 55.000 0.00 0.00 0.00 4.02
4048 5781 1.203237 AGGTGTGAGAGTGGATGTCCT 60.203 52.381 0.09 0.00 36.82 3.85
4049 5782 1.066573 GGTGTGAGAGTGGATGTCCTG 60.067 57.143 0.09 0.00 36.82 3.86
4050 5783 0.610174 TGTGAGAGTGGATGTCCTGC 59.390 55.000 0.09 0.00 36.82 4.85
4051 5784 0.610174 GTGAGAGTGGATGTCCTGCA 59.390 55.000 0.09 0.00 36.82 4.41
4052 5785 0.610174 TGAGAGTGGATGTCCTGCAC 59.390 55.000 0.09 0.00 45.88 4.57
4055 5788 2.358615 GTGGATGTCCTGCACGCA 60.359 61.111 0.09 0.00 36.41 5.24
4056 5789 2.046988 TGGATGTCCTGCACGCAG 60.047 61.111 12.17 12.17 43.26 5.18
4057 5790 3.503363 GGATGTCCTGCACGCAGC 61.503 66.667 13.65 1.75 42.35 5.25
4075 5808 3.049674 GGCAGCTGCACGCAGTTA 61.050 61.111 37.63 0.00 41.61 2.24
4076 5809 2.401766 GGCAGCTGCACGCAGTTAT 61.402 57.895 37.63 4.54 41.61 1.89
4077 5810 1.061570 GCAGCTGCACGCAGTTATC 59.938 57.895 33.36 6.28 41.61 1.75
4078 5811 1.717937 CAGCTGCACGCAGTTATCC 59.282 57.895 19.56 3.44 41.61 2.59
4079 5812 1.811266 AGCTGCACGCAGTTATCCG 60.811 57.895 19.56 0.00 41.61 4.18
4080 5813 2.813179 GCTGCACGCAGTTATCCGG 61.813 63.158 19.56 0.00 41.61 5.14
4081 5814 2.813179 CTGCACGCAGTTATCCGGC 61.813 63.158 10.94 0.00 41.61 6.13
4082 5815 3.573491 GCACGCAGTTATCCGGCC 61.573 66.667 0.00 0.00 41.61 6.13
4083 5816 3.261951 CACGCAGTTATCCGGCCG 61.262 66.667 21.04 21.04 41.61 6.13
4086 5819 3.573491 GCAGTTATCCGGCCGCAC 61.573 66.667 22.85 13.21 0.00 5.34
4087 5820 2.895372 CAGTTATCCGGCCGCACC 60.895 66.667 22.85 4.93 0.00 5.01
4088 5821 4.171103 AGTTATCCGGCCGCACCC 62.171 66.667 22.85 5.74 33.26 4.61
4103 5836 4.129737 CCCGAGTCGCGTGGTGAT 62.130 66.667 7.12 0.00 38.67 3.06
4104 5837 2.880879 CCGAGTCGCGTGGTGATG 60.881 66.667 7.12 0.00 38.67 3.07
4105 5838 3.545481 CGAGTCGCGTGGTGATGC 61.545 66.667 5.77 0.00 34.64 3.91
4111 5844 4.450122 GCGTGGTGATGCGTGCAG 62.450 66.667 0.00 0.00 0.00 4.41
4112 5845 3.043713 CGTGGTGATGCGTGCAGT 61.044 61.111 0.00 0.00 0.00 4.40
4113 5846 2.606961 CGTGGTGATGCGTGCAGTT 61.607 57.895 0.00 0.00 0.00 3.16
4114 5847 1.654220 GTGGTGATGCGTGCAGTTT 59.346 52.632 0.00 0.00 0.00 2.66
4115 5848 0.661187 GTGGTGATGCGTGCAGTTTG 60.661 55.000 0.00 0.00 0.00 2.93
4116 5849 0.817229 TGGTGATGCGTGCAGTTTGA 60.817 50.000 0.00 0.00 0.00 2.69
4117 5850 0.523072 GGTGATGCGTGCAGTTTGAT 59.477 50.000 0.00 0.00 0.00 2.57
4118 5851 1.068333 GGTGATGCGTGCAGTTTGATT 60.068 47.619 0.00 0.00 0.00 2.57
4119 5852 2.607771 GGTGATGCGTGCAGTTTGATTT 60.608 45.455 0.00 0.00 0.00 2.17
4120 5853 2.406024 GTGATGCGTGCAGTTTGATTTG 59.594 45.455 0.00 0.00 0.00 2.32
4121 5854 1.387756 GATGCGTGCAGTTTGATTTGC 59.612 47.619 0.00 0.00 40.67 3.68
4122 5855 0.385029 TGCGTGCAGTTTGATTTGCT 59.615 45.000 0.00 0.00 40.87 3.91
4123 5856 1.606189 TGCGTGCAGTTTGATTTGCTA 59.394 42.857 0.00 0.00 40.87 3.49
4124 5857 2.033927 TGCGTGCAGTTTGATTTGCTAA 59.966 40.909 0.00 0.00 40.87 3.09
4125 5858 3.049206 GCGTGCAGTTTGATTTGCTAAA 58.951 40.909 0.00 0.00 40.87 1.85
4126 5859 3.120121 GCGTGCAGTTTGATTTGCTAAAG 59.880 43.478 0.00 0.00 40.87 1.85
4127 5860 3.120121 CGTGCAGTTTGATTTGCTAAAGC 59.880 43.478 0.00 0.00 40.87 3.51
4128 5861 3.120121 GTGCAGTTTGATTTGCTAAAGCG 59.880 43.478 0.00 0.00 45.83 4.68
4129 5862 2.091122 GCAGTTTGATTTGCTAAAGCGC 59.909 45.455 0.00 0.00 45.83 5.92
4130 5863 3.568538 CAGTTTGATTTGCTAAAGCGCT 58.431 40.909 2.64 2.64 45.83 5.92
4131 5864 4.722194 CAGTTTGATTTGCTAAAGCGCTA 58.278 39.130 12.05 0.00 45.83 4.26
4132 5865 5.153513 CAGTTTGATTTGCTAAAGCGCTAA 58.846 37.500 12.05 0.00 45.83 3.09
4133 5866 5.629020 CAGTTTGATTTGCTAAAGCGCTAAA 59.371 36.000 12.05 7.68 45.83 1.85
4134 5867 5.858581 AGTTTGATTTGCTAAAGCGCTAAAG 59.141 36.000 12.05 12.79 45.83 1.85
4135 5868 3.758300 TGATTTGCTAAAGCGCTAAAGC 58.242 40.909 28.06 28.06 45.83 3.51
4148 5881 3.014604 GCTAAAGCGGAGATACATCGT 57.985 47.619 0.00 0.00 0.00 3.73
4149 5882 2.726760 GCTAAAGCGGAGATACATCGTG 59.273 50.000 0.00 0.00 0.00 4.35
4150 5883 2.961526 AAAGCGGAGATACATCGTGT 57.038 45.000 0.00 0.00 0.00 4.49
4151 5884 4.556104 GCTAAAGCGGAGATACATCGTGTA 60.556 45.833 1.30 1.30 37.24 2.90
4152 5885 4.380841 AAAGCGGAGATACATCGTGTAA 57.619 40.909 2.70 0.00 36.31 2.41
4153 5886 4.585955 AAGCGGAGATACATCGTGTAAT 57.414 40.909 2.70 0.00 36.31 1.89
4154 5887 5.700722 AAGCGGAGATACATCGTGTAATA 57.299 39.130 2.70 0.00 36.31 0.98
4155 5888 5.044428 AGCGGAGATACATCGTGTAATAC 57.956 43.478 2.70 0.00 36.31 1.89
4156 5889 4.517832 AGCGGAGATACATCGTGTAATACA 59.482 41.667 0.00 0.00 36.31 2.29
4157 5890 4.852104 GCGGAGATACATCGTGTAATACAG 59.148 45.833 0.00 0.00 36.31 2.74
4158 5891 5.334646 GCGGAGATACATCGTGTAATACAGA 60.335 44.000 0.00 0.00 36.31 3.41
4159 5892 6.307915 CGGAGATACATCGTGTAATACAGAG 58.692 44.000 0.00 0.00 36.31 3.35
4160 5893 6.147328 CGGAGATACATCGTGTAATACAGAGA 59.853 42.308 0.00 0.00 36.31 3.10
4161 5894 7.523219 GGAGATACATCGTGTAATACAGAGAG 58.477 42.308 0.00 0.00 36.31 3.20
4162 5895 7.388224 GGAGATACATCGTGTAATACAGAGAGA 59.612 40.741 0.00 0.00 36.31 3.10
4163 5896 8.856153 AGATACATCGTGTAATACAGAGAGAT 57.144 34.615 0.00 0.00 36.31 2.75
4164 5897 9.945904 AGATACATCGTGTAATACAGAGAGATA 57.054 33.333 0.00 0.00 36.31 1.98
4165 5898 9.976255 GATACATCGTGTAATACAGAGAGATAC 57.024 37.037 0.00 0.00 36.31 2.24
4166 5899 7.803279 ACATCGTGTAATACAGAGAGATACA 57.197 36.000 0.00 0.00 0.00 2.29
4167 5900 7.640852 ACATCGTGTAATACAGAGAGATACAC 58.359 38.462 0.00 0.00 41.67 2.90
4168 5901 7.499563 ACATCGTGTAATACAGAGAGATACACT 59.500 37.037 11.26 0.00 42.46 3.55
4169 5902 8.989980 CATCGTGTAATACAGAGAGATACACTA 58.010 37.037 11.26 2.85 42.46 2.74
4170 5903 9.727859 ATCGTGTAATACAGAGAGATACACTAT 57.272 33.333 11.26 4.75 42.46 2.12
4171 5904 8.989980 TCGTGTAATACAGAGAGATACACTATG 58.010 37.037 11.26 0.00 42.46 2.23
4172 5905 8.775527 CGTGTAATACAGAGAGATACACTATGT 58.224 37.037 11.26 0.00 42.46 2.29
4174 5907 8.989980 TGTAATACAGAGAGATACACTATGTCG 58.010 37.037 0.00 0.00 39.81 4.35
4175 5908 4.822036 ACAGAGAGATACACTATGTCGC 57.178 45.455 0.00 0.00 35.35 5.19
4176 5909 3.248841 ACAGAGAGATACACTATGTCGCG 59.751 47.826 0.00 0.00 35.35 5.87
4177 5910 3.248841 CAGAGAGATACACTATGTCGCGT 59.751 47.826 5.77 0.00 34.32 6.01
4178 5911 3.495377 AGAGAGATACACTATGTCGCGTC 59.505 47.826 5.77 0.00 34.32 5.19
4179 5912 2.548904 AGAGATACACTATGTCGCGTCC 59.451 50.000 5.77 0.00 33.99 4.79
4180 5913 1.263484 AGATACACTATGTCGCGTCCG 59.737 52.381 5.77 0.00 0.00 4.79
4181 5914 1.003116 GATACACTATGTCGCGTCCGT 60.003 52.381 5.77 1.96 35.54 4.69
4182 5915 0.097499 TACACTATGTCGCGTCCGTG 59.903 55.000 5.77 10.58 35.54 4.94
4183 5916 2.202570 ACTATGTCGCGTCCGTGC 60.203 61.111 5.77 0.00 35.54 5.34
4184 5917 2.202557 CTATGTCGCGTCCGTGCA 60.203 61.111 5.77 0.00 35.54 4.57
4185 5918 2.202557 TATGTCGCGTCCGTGCAG 60.203 61.111 5.77 0.00 35.54 4.41
4186 5919 2.867333 CTATGTCGCGTCCGTGCAGT 62.867 60.000 5.77 0.00 35.54 4.40
4199 5932 4.101448 GCAGTGGGCTCGGTCCAT 62.101 66.667 0.47 0.00 40.40 3.41
4200 5933 2.124983 CAGTGGGCTCGGTCCATG 60.125 66.667 0.47 0.00 40.40 3.66
4201 5934 3.402681 AGTGGGCTCGGTCCATGG 61.403 66.667 4.97 4.97 40.40 3.66
4202 5935 3.717294 GTGGGCTCGGTCCATGGT 61.717 66.667 12.58 0.00 40.40 3.55
4203 5936 2.039787 TGGGCTCGGTCCATGGTA 59.960 61.111 12.58 0.00 29.54 3.25
4204 5937 2.363975 TGGGCTCGGTCCATGGTAC 61.364 63.158 12.58 8.64 29.54 3.34
4205 5938 2.064581 GGGCTCGGTCCATGGTACT 61.065 63.158 12.58 0.00 0.00 2.73
4206 5939 1.623542 GGGCTCGGTCCATGGTACTT 61.624 60.000 12.58 0.00 0.00 2.24
4207 5940 0.462047 GGCTCGGTCCATGGTACTTG 60.462 60.000 12.58 6.28 0.00 3.16
4208 5941 0.249398 GCTCGGTCCATGGTACTTGT 59.751 55.000 12.58 0.00 0.00 3.16
4209 5942 1.739371 GCTCGGTCCATGGTACTTGTC 60.739 57.143 12.58 0.00 0.00 3.18
4210 5943 1.825474 CTCGGTCCATGGTACTTGTCT 59.175 52.381 12.58 0.00 0.00 3.41
4211 5944 1.548719 TCGGTCCATGGTACTTGTCTG 59.451 52.381 12.58 0.89 0.00 3.51
4212 5945 1.548719 CGGTCCATGGTACTTGTCTGA 59.451 52.381 12.58 0.00 0.00 3.27
4213 5946 2.674177 CGGTCCATGGTACTTGTCTGAC 60.674 54.545 12.58 0.00 0.00 3.51
4214 5947 2.607187 GTCCATGGTACTTGTCTGACG 58.393 52.381 12.58 0.00 0.00 4.35
4215 5948 1.067142 TCCATGGTACTTGTCTGACGC 60.067 52.381 12.58 0.00 0.00 5.19
4216 5949 0.992072 CATGGTACTTGTCTGACGCG 59.008 55.000 3.53 3.53 0.00 6.01
4217 5950 0.108804 ATGGTACTTGTCTGACGCGG 60.109 55.000 12.47 0.00 0.00 6.46
4218 5951 1.174078 TGGTACTTGTCTGACGCGGA 61.174 55.000 12.47 0.00 0.00 5.54
4219 5952 0.731855 GGTACTTGTCTGACGCGGAC 60.732 60.000 12.47 9.21 39.93 4.79
4220 5953 0.039798 GTACTTGTCTGACGCGGACA 60.040 55.000 12.47 12.10 46.42 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.544136 ACATTTTGTTGTTTTGAACAGGC 57.456 34.783 0.00 0.00 43.27 4.85
46 47 8.650143 TTTCCCTTAGACAGAAATTATTTGCT 57.350 30.769 0.00 0.00 0.00 3.91
119 131 1.804748 AGAATCAGCCGTTCCGTTTTC 59.195 47.619 0.00 0.00 0.00 2.29
121 133 1.156736 CAGAATCAGCCGTTCCGTTT 58.843 50.000 0.00 0.00 0.00 3.60
191 204 2.122167 CGCTCTAAGGGCCGTCTCT 61.122 63.158 0.00 0.00 0.00 3.10
192 205 2.413765 CGCTCTAAGGGCCGTCTC 59.586 66.667 0.00 0.00 0.00 3.36
193 206 3.148279 CCGCTCTAAGGGCCGTCT 61.148 66.667 0.00 0.00 0.00 4.18
194 207 4.893601 GCCGCTCTAAGGGCCGTC 62.894 72.222 0.00 0.00 43.64 4.79
303 316 0.179137 GCGATGAGGTCATGTCGTGA 60.179 55.000 0.00 0.00 36.57 4.35
342 2007 1.003118 TGCCGATATTCCTATGTGCCC 59.997 52.381 0.00 0.00 0.00 5.36
383 2053 5.190992 TCCGCGCTATATTTCTCTGTTTA 57.809 39.130 5.56 0.00 0.00 2.01
391 2061 5.280678 CGCTTTTATTTCCGCGCTATATTTC 59.719 40.000 5.56 0.00 39.11 2.17
533 2208 2.015726 GGGAGGGGGAGAGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
662 2355 0.742635 GAGGAAAGCGCCTGGAAGAG 60.743 60.000 2.29 0.00 38.73 2.85
868 2561 0.030399 ATACTAGGCGGGGAAAGGGT 60.030 55.000 0.00 0.00 0.00 4.34
892 2585 1.508632 CAAGAAACCCTCGCGAAGAA 58.491 50.000 11.33 0.00 0.00 2.52
948 2641 2.364186 GGGTTGGGGCCAGATTGG 60.364 66.667 4.39 0.00 41.55 3.16
1070 2763 0.671781 CTTCCCAAGCCAGTCGTCAG 60.672 60.000 0.00 0.00 0.00 3.51
1186 2879 4.344865 ATCACCACCACCACCGCC 62.345 66.667 0.00 0.00 0.00 6.13
1187 2880 2.819984 ATCATCACCACCACCACCGC 62.820 60.000 0.00 0.00 0.00 5.68
1188 2881 1.026182 CATCATCACCACCACCACCG 61.026 60.000 0.00 0.00 0.00 4.94
1189 2882 0.327924 TCATCATCACCACCACCACC 59.672 55.000 0.00 0.00 0.00 4.61
1190 2883 1.679944 CCTCATCATCACCACCACCAC 60.680 57.143 0.00 0.00 0.00 4.16
1254 2965 2.779429 TGTCCTCCCCGATGGTAATA 57.221 50.000 0.00 0.00 34.77 0.98
1380 3091 5.009010 ACATAACAAGGCACTGCTTATATGC 59.991 40.000 0.00 3.70 40.86 3.14
1393 3104 4.630069 ACATAGTGTCGAACATAACAAGGC 59.370 41.667 0.00 0.00 0.00 4.35
1406 3118 6.852853 GCATTTCATTTCCATACATAGTGTCG 59.147 38.462 0.00 0.00 0.00 4.35
1422 3134 7.703621 GTCATGCATAGTACAAAGCATTTCATT 59.296 33.333 13.91 0.00 44.63 2.57
1441 3153 1.170442 CAGCACAAGATGGTCATGCA 58.830 50.000 0.00 0.00 36.72 3.96
1479 3194 3.618594 CGTGACTCGATCCAAATTCACAT 59.381 43.478 0.00 0.00 42.86 3.21
1485 3200 4.873746 ATATCCGTGACTCGATCCAAAT 57.126 40.909 0.00 0.00 42.86 2.32
1543 3258 7.087409 TGCATCTTTAACCACATTCATAGTG 57.913 36.000 0.00 0.00 36.76 2.74
1570 3285 4.142026 CCATCTCCATGTTGCATGTTGAAT 60.142 41.667 8.11 0.00 0.00 2.57
1577 3292 2.093869 GCAAACCATCTCCATGTTGCAT 60.094 45.455 8.13 0.00 39.85 3.96
1622 3338 8.682936 ATTCATAAGCAATAAAGACAGGTAGG 57.317 34.615 0.00 0.00 0.00 3.18
1726 3442 4.215349 GCTACTGAAGCCTGCCTG 57.785 61.111 0.00 0.00 46.25 4.85
1961 3678 8.629158 TGACACTGCATTTAAGAAGTAACAATT 58.371 29.630 0.00 0.00 0.00 2.32
2000 3717 1.499368 TACATGGAGCTGGAGCATCA 58.501 50.000 0.00 0.00 45.16 3.07
2205 3922 2.783832 GACTTCTGTTTGCAAAAGACGC 59.216 45.455 14.67 1.27 0.00 5.19
2451 4168 2.103263 GGGTACTGATTGGAGCACTAGG 59.897 54.545 0.00 0.00 0.00 3.02
2547 4264 7.847096 TGTATAGGTTGAACTTGCTGAGATAA 58.153 34.615 0.00 0.00 0.00 1.75
2670 4387 1.375098 GAGGCAGCCTGTGAAGATGC 61.375 60.000 22.26 0.00 31.76 3.91
2702 4419 0.037605 AAAGTTGAGGTCCTACGCCG 60.038 55.000 0.00 0.00 0.00 6.46
2900 4617 1.918293 ACCGGCATCCAGAGGTTGA 60.918 57.895 0.00 0.00 32.17 3.18
2945 4662 2.355837 GACGCAACAGACTCGGCA 60.356 61.111 0.00 0.00 0.00 5.69
3001 4718 3.181434 ACCACCACCTGTTGTATGAATGT 60.181 43.478 0.00 0.00 0.00 2.71
3239 4956 0.175989 CTAAAGACGGGACAGCCTCC 59.824 60.000 0.00 0.00 38.55 4.30
3280 4997 6.184789 ACATCACCGGTTTTATTGTCCTATT 58.815 36.000 2.97 0.00 0.00 1.73
3281 4998 5.751586 ACATCACCGGTTTTATTGTCCTAT 58.248 37.500 2.97 0.00 0.00 2.57
3282 4999 5.168647 ACATCACCGGTTTTATTGTCCTA 57.831 39.130 2.97 0.00 0.00 2.94
3283 5000 4.028993 ACATCACCGGTTTTATTGTCCT 57.971 40.909 2.97 0.00 0.00 3.85
3284 5001 4.776795 AACATCACCGGTTTTATTGTCC 57.223 40.909 2.97 0.00 0.00 4.02
3285 5002 6.490566 AGTAACATCACCGGTTTTATTGTC 57.509 37.500 2.97 0.00 0.00 3.18
3286 5003 7.163441 ACTAGTAACATCACCGGTTTTATTGT 58.837 34.615 2.97 1.15 0.00 2.71
3287 5004 7.605410 ACTAGTAACATCACCGGTTTTATTG 57.395 36.000 2.97 0.43 0.00 1.90
3328 5045 4.705110 TTCACCTCTCATGTGAAGGAAA 57.295 40.909 14.81 7.87 45.19 3.13
3339 5056 3.648067 ACAAGGAACATCTTCACCTCTCA 59.352 43.478 0.00 0.00 31.89 3.27
3454 5171 5.814705 AGTGACAAAGATTACTAGCATCTGC 59.185 40.000 5.91 0.00 42.49 4.26
3455 5172 7.222417 CAGAGTGACAAAGATTACTAGCATCTG 59.778 40.741 5.91 0.00 31.00 2.90
3478 5195 7.766278 GTGGAAATTCTGCTCTTCTATTACAGA 59.234 37.037 0.00 0.00 35.67 3.41
3714 5431 5.657302 TGGAGAGTAGTCCCTAGTGATTTTC 59.343 44.000 0.00 0.00 35.49 2.29
3868 5601 0.111266 CGCGTTTCTCGTTTCCACAG 60.111 55.000 0.00 0.00 42.13 3.66
3869 5602 0.528033 TCGCGTTTCTCGTTTCCACA 60.528 50.000 5.77 0.00 42.13 4.17
3870 5603 0.161024 CTCGCGTTTCTCGTTTCCAC 59.839 55.000 5.77 0.00 42.13 4.02
3871 5604 0.249155 ACTCGCGTTTCTCGTTTCCA 60.249 50.000 5.77 0.00 42.13 3.53
3873 5606 0.850856 ACACTCGCGTTTCTCGTTTC 59.149 50.000 5.77 0.00 42.13 2.78
3876 5609 1.266786 CGAACACTCGCGTTTCTCGT 61.267 55.000 5.77 0.00 42.13 4.18
3877 5610 1.407329 CGAACACTCGCGTTTCTCG 59.593 57.895 5.77 6.00 38.45 4.04
3900 5633 5.168569 GGACAGATCGTTACATGTTTGAGA 58.831 41.667 2.30 0.00 0.00 3.27
3906 5639 1.136305 CCGGGACAGATCGTTACATGT 59.864 52.381 2.69 2.69 0.00 3.21
3929 5662 1.541588 GCAAAAGATGAGGTCCACCAC 59.458 52.381 0.00 0.00 38.89 4.16
3930 5663 1.881925 CGCAAAAGATGAGGTCCACCA 60.882 52.381 0.00 0.00 38.89 4.17
3931 5664 0.804989 CGCAAAAGATGAGGTCCACC 59.195 55.000 0.00 0.00 0.00 4.61
3932 5665 0.804989 CCGCAAAAGATGAGGTCCAC 59.195 55.000 0.00 0.00 43.44 4.02
3933 5666 3.248043 CCGCAAAAGATGAGGTCCA 57.752 52.632 0.00 0.00 43.44 4.02
3938 5671 2.098117 GTCCCAATCCGCAAAAGATGAG 59.902 50.000 0.00 0.00 0.00 2.90
3939 5672 2.091541 GTCCCAATCCGCAAAAGATGA 58.908 47.619 0.00 0.00 0.00 2.92
3940 5673 1.202177 CGTCCCAATCCGCAAAAGATG 60.202 52.381 0.00 0.00 0.00 2.90
3941 5674 1.094785 CGTCCCAATCCGCAAAAGAT 58.905 50.000 0.00 0.00 0.00 2.40
3942 5675 0.035598 TCGTCCCAATCCGCAAAAGA 59.964 50.000 0.00 0.00 0.00 2.52
3943 5676 0.168128 GTCGTCCCAATCCGCAAAAG 59.832 55.000 0.00 0.00 0.00 2.27
3944 5677 0.250553 AGTCGTCCCAATCCGCAAAA 60.251 50.000 0.00 0.00 0.00 2.44
3945 5678 0.953471 CAGTCGTCCCAATCCGCAAA 60.953 55.000 0.00 0.00 0.00 3.68
3946 5679 1.375396 CAGTCGTCCCAATCCGCAA 60.375 57.895 0.00 0.00 0.00 4.85
3947 5680 2.264480 CAGTCGTCCCAATCCGCA 59.736 61.111 0.00 0.00 0.00 5.69
3948 5681 2.511600 CCAGTCGTCCCAATCCGC 60.512 66.667 0.00 0.00 0.00 5.54
3949 5682 1.895020 TTCCCAGTCGTCCCAATCCG 61.895 60.000 0.00 0.00 0.00 4.18
3950 5683 0.392595 GTTCCCAGTCGTCCCAATCC 60.393 60.000 0.00 0.00 0.00 3.01
3951 5684 0.323629 TGTTCCCAGTCGTCCCAATC 59.676 55.000 0.00 0.00 0.00 2.67
3952 5685 0.991920 ATGTTCCCAGTCGTCCCAAT 59.008 50.000 0.00 0.00 0.00 3.16
3953 5686 0.036164 CATGTTCCCAGTCGTCCCAA 59.964 55.000 0.00 0.00 0.00 4.12
4017 5750 1.686587 TCTCACACCTACACCACACTG 59.313 52.381 0.00 0.00 0.00 3.66
4035 5768 1.593787 CGTGCAGGACATCCACTCT 59.406 57.895 0.00 0.00 38.89 3.24
4036 5769 2.103042 GCGTGCAGGACATCCACTC 61.103 63.158 11.29 0.00 38.89 3.51
4037 5770 2.046892 GCGTGCAGGACATCCACT 60.047 61.111 11.29 0.00 38.89 4.00
4038 5771 2.358615 TGCGTGCAGGACATCCAC 60.359 61.111 11.29 0.00 38.89 4.02
4039 5772 2.046988 CTGCGTGCAGGACATCCA 60.047 61.111 14.00 0.00 40.17 3.41
4040 5773 3.503363 GCTGCGTGCAGGACATCC 61.503 66.667 22.22 1.84 43.77 3.51
4041 5774 3.857854 CGCTGCGTGCAGGACATC 61.858 66.667 22.22 5.30 43.77 3.06
4064 5797 2.817834 GCCGGATAACTGCGTGCA 60.818 61.111 5.05 0.00 34.35 4.57
4065 5798 3.573491 GGCCGGATAACTGCGTGC 61.573 66.667 5.05 0.00 33.91 5.34
4066 5799 3.261951 CGGCCGGATAACTGCGTG 61.262 66.667 20.10 0.00 33.91 5.34
4069 5802 3.573491 GTGCGGCCGGATAACTGC 61.573 66.667 29.38 7.18 38.70 4.40
4070 5803 2.895372 GGTGCGGCCGGATAACTG 60.895 66.667 29.38 0.00 0.00 3.16
4071 5804 4.171103 GGGTGCGGCCGGATAACT 62.171 66.667 29.38 0.00 38.44 2.24
4086 5819 4.129737 ATCACCACGCGACTCGGG 62.130 66.667 15.93 13.53 45.13 5.14
4087 5820 2.880879 CATCACCACGCGACTCGG 60.881 66.667 15.93 10.25 43.86 4.63
4088 5821 3.545481 GCATCACCACGCGACTCG 61.545 66.667 15.93 0.00 45.38 4.18
4094 5827 4.450122 CTGCACGCATCACCACGC 62.450 66.667 0.00 0.00 0.00 5.34
4095 5828 2.116736 AAACTGCACGCATCACCACG 62.117 55.000 0.00 0.00 0.00 4.94
4096 5829 0.661187 CAAACTGCACGCATCACCAC 60.661 55.000 0.00 0.00 0.00 4.16
4097 5830 0.817229 TCAAACTGCACGCATCACCA 60.817 50.000 0.00 0.00 0.00 4.17
4098 5831 0.523072 ATCAAACTGCACGCATCACC 59.477 50.000 0.00 0.00 0.00 4.02
4099 5832 2.336554 AATCAAACTGCACGCATCAC 57.663 45.000 0.00 0.00 0.00 3.06
4100 5833 2.663808 CAAATCAAACTGCACGCATCA 58.336 42.857 0.00 0.00 0.00 3.07
4101 5834 1.387756 GCAAATCAAACTGCACGCATC 59.612 47.619 0.00 0.00 38.48 3.91
4102 5835 1.000060 AGCAAATCAAACTGCACGCAT 60.000 42.857 0.00 0.00 41.17 4.73
4103 5836 0.385029 AGCAAATCAAACTGCACGCA 59.615 45.000 0.00 0.00 41.17 5.24
4104 5837 2.330231 TAGCAAATCAAACTGCACGC 57.670 45.000 0.00 0.00 41.17 5.34
4105 5838 3.120121 GCTTTAGCAAATCAAACTGCACG 59.880 43.478 0.00 0.00 41.17 5.34
4106 5839 3.120121 CGCTTTAGCAAATCAAACTGCAC 59.880 43.478 2.29 0.00 41.17 4.57
4107 5840 3.307674 CGCTTTAGCAAATCAAACTGCA 58.692 40.909 2.29 0.00 41.17 4.41
4108 5841 2.091122 GCGCTTTAGCAAATCAAACTGC 59.909 45.455 0.00 0.00 42.21 4.40
4109 5842 3.568538 AGCGCTTTAGCAAATCAAACTG 58.431 40.909 2.64 0.00 42.21 3.16
4110 5843 3.923017 AGCGCTTTAGCAAATCAAACT 57.077 38.095 2.64 0.00 42.21 2.66
4111 5844 5.443301 GCTTTAGCGCTTTAGCAAATCAAAC 60.443 40.000 28.18 8.05 42.21 2.93
4112 5845 4.621034 GCTTTAGCGCTTTAGCAAATCAAA 59.379 37.500 28.18 14.19 42.21 2.69
4113 5846 4.165779 GCTTTAGCGCTTTAGCAAATCAA 58.834 39.130 28.18 7.98 42.21 2.57
4114 5847 3.758300 GCTTTAGCGCTTTAGCAAATCA 58.242 40.909 28.18 2.11 42.21 2.57
4128 5861 2.726760 CACGATGTATCTCCGCTTTAGC 59.273 50.000 0.00 0.00 37.78 3.09
4129 5862 3.966154 ACACGATGTATCTCCGCTTTAG 58.034 45.455 0.00 0.00 0.00 1.85
4130 5863 5.503662 TTACACGATGTATCTCCGCTTTA 57.496 39.130 0.00 0.00 32.20 1.85
4131 5864 2.961526 ACACGATGTATCTCCGCTTT 57.038 45.000 0.00 0.00 0.00 3.51
4132 5865 4.585955 ATTACACGATGTATCTCCGCTT 57.414 40.909 0.00 0.00 32.20 4.68
4133 5866 4.517832 TGTATTACACGATGTATCTCCGCT 59.482 41.667 0.00 0.00 32.20 5.52
4134 5867 4.790878 TGTATTACACGATGTATCTCCGC 58.209 43.478 0.00 0.00 32.20 5.54
4135 5868 6.147328 TCTCTGTATTACACGATGTATCTCCG 59.853 42.308 0.00 0.00 32.20 4.63
4136 5869 7.388224 TCTCTCTGTATTACACGATGTATCTCC 59.612 40.741 0.00 0.00 32.20 3.71
4137 5870 8.312896 TCTCTCTGTATTACACGATGTATCTC 57.687 38.462 0.00 0.00 32.20 2.75
4138 5871 8.856153 ATCTCTCTGTATTACACGATGTATCT 57.144 34.615 0.00 0.00 32.20 1.98
4139 5872 9.976255 GTATCTCTCTGTATTACACGATGTATC 57.024 37.037 0.00 0.00 32.20 2.24
4140 5873 9.503399 TGTATCTCTCTGTATTACACGATGTAT 57.497 33.333 0.00 0.00 32.20 2.29
4141 5874 8.771766 GTGTATCTCTCTGTATTACACGATGTA 58.228 37.037 0.00 0.00 0.00 2.29
4142 5875 7.499563 AGTGTATCTCTCTGTATTACACGATGT 59.500 37.037 0.00 0.00 40.60 3.06
4143 5876 7.866729 AGTGTATCTCTCTGTATTACACGATG 58.133 38.462 0.00 0.00 40.60 3.84
4144 5877 9.727859 ATAGTGTATCTCTCTGTATTACACGAT 57.272 33.333 0.00 0.00 40.60 3.73
4145 5878 8.989980 CATAGTGTATCTCTCTGTATTACACGA 58.010 37.037 0.00 0.00 40.60 4.35
4146 5879 8.775527 ACATAGTGTATCTCTCTGTATTACACG 58.224 37.037 0.00 0.00 40.60 4.49
4148 5881 8.989980 CGACATAGTGTATCTCTCTGTATTACA 58.010 37.037 0.00 0.00 0.00 2.41
4149 5882 7.958567 GCGACATAGTGTATCTCTCTGTATTAC 59.041 40.741 0.00 0.00 0.00 1.89
4150 5883 7.148623 CGCGACATAGTGTATCTCTCTGTATTA 60.149 40.741 0.00 0.00 0.00 0.98
4151 5884 6.347806 CGCGACATAGTGTATCTCTCTGTATT 60.348 42.308 0.00 0.00 0.00 1.89
4152 5885 5.120986 CGCGACATAGTGTATCTCTCTGTAT 59.879 44.000 0.00 0.00 0.00 2.29
4153 5886 4.448060 CGCGACATAGTGTATCTCTCTGTA 59.552 45.833 0.00 0.00 0.00 2.74
4154 5887 3.248841 CGCGACATAGTGTATCTCTCTGT 59.751 47.826 0.00 0.00 0.00 3.41
4155 5888 3.248841 ACGCGACATAGTGTATCTCTCTG 59.751 47.826 15.93 0.00 32.47 3.35
4156 5889 3.468770 ACGCGACATAGTGTATCTCTCT 58.531 45.455 15.93 0.00 32.47 3.10
4157 5890 3.364167 GGACGCGACATAGTGTATCTCTC 60.364 52.174 15.93 0.00 34.67 3.20
4158 5891 2.548904 GGACGCGACATAGTGTATCTCT 59.451 50.000 15.93 0.00 34.67 3.10
4159 5892 2.662249 CGGACGCGACATAGTGTATCTC 60.662 54.545 15.93 0.00 34.67 2.75
4160 5893 1.263484 CGGACGCGACATAGTGTATCT 59.737 52.381 15.93 0.00 34.67 1.98
4161 5894 1.003116 ACGGACGCGACATAGTGTATC 60.003 52.381 15.93 0.00 34.67 2.24
4162 5895 1.019673 ACGGACGCGACATAGTGTAT 58.980 50.000 15.93 0.00 34.67 2.29
4163 5896 0.097499 CACGGACGCGACATAGTGTA 59.903 55.000 15.93 0.00 34.67 2.90
4164 5897 1.154093 CACGGACGCGACATAGTGT 60.154 57.895 15.93 0.00 37.59 3.55
4165 5898 2.505498 GCACGGACGCGACATAGTG 61.505 63.158 15.93 18.52 0.00 2.74
4166 5899 2.202570 GCACGGACGCGACATAGT 60.203 61.111 15.93 5.35 0.00 2.12
4167 5900 2.202557 TGCACGGACGCGACATAG 60.203 61.111 15.93 4.62 33.35 2.23
4168 5901 2.202557 CTGCACGGACGCGACATA 60.203 61.111 15.93 0.00 33.35 2.29
4169 5902 4.357947 ACTGCACGGACGCGACAT 62.358 61.111 15.93 0.00 33.35 3.06
4182 5915 4.101448 ATGGACCGAGCCCACTGC 62.101 66.667 0.00 0.00 36.36 4.40
4183 5916 2.124983 CATGGACCGAGCCCACTG 60.125 66.667 0.00 0.00 36.36 3.66
4184 5917 2.815684 TACCATGGACCGAGCCCACT 62.816 60.000 21.47 0.00 36.36 4.00
4185 5918 2.363975 TACCATGGACCGAGCCCAC 61.364 63.158 21.47 0.00 36.36 4.61
4186 5919 2.039787 TACCATGGACCGAGCCCA 59.960 61.111 21.47 0.00 38.19 5.36
4187 5920 1.623542 AAGTACCATGGACCGAGCCC 61.624 60.000 21.47 0.00 0.00 5.19
4188 5921 0.462047 CAAGTACCATGGACCGAGCC 60.462 60.000 21.47 0.00 0.00 4.70
4189 5922 0.249398 ACAAGTACCATGGACCGAGC 59.751 55.000 21.47 1.40 0.00 5.03
4190 5923 1.825474 AGACAAGTACCATGGACCGAG 59.175 52.381 21.47 7.72 0.00 4.63
4191 5924 1.548719 CAGACAAGTACCATGGACCGA 59.451 52.381 21.47 0.00 0.00 4.69
4192 5925 1.548719 TCAGACAAGTACCATGGACCG 59.451 52.381 21.47 8.93 0.00 4.79
4193 5926 2.674177 CGTCAGACAAGTACCATGGACC 60.674 54.545 21.47 8.10 0.00 4.46
4194 5927 2.607187 CGTCAGACAAGTACCATGGAC 58.393 52.381 21.47 12.37 0.00 4.02
4195 5928 1.067142 GCGTCAGACAAGTACCATGGA 60.067 52.381 21.47 0.00 0.00 3.41
4196 5929 1.359848 GCGTCAGACAAGTACCATGG 58.640 55.000 11.19 11.19 0.00 3.66
4197 5930 0.992072 CGCGTCAGACAAGTACCATG 59.008 55.000 0.00 0.00 0.00 3.66
4198 5931 0.108804 CCGCGTCAGACAAGTACCAT 60.109 55.000 4.92 0.00 0.00 3.55
4199 5932 1.174078 TCCGCGTCAGACAAGTACCA 61.174 55.000 4.92 0.00 0.00 3.25
4200 5933 0.731855 GTCCGCGTCAGACAAGTACC 60.732 60.000 4.92 0.00 34.27 3.34
4201 5934 0.039798 TGTCCGCGTCAGACAAGTAC 60.040 55.000 13.23 0.00 41.17 2.73
4202 5935 0.669619 TTGTCCGCGTCAGACAAGTA 59.330 50.000 20.65 4.51 46.50 2.24
4203 5936 1.440060 TTGTCCGCGTCAGACAAGT 59.560 52.632 20.65 0.00 46.50 3.16
4204 5937 4.336581 TTGTCCGCGTCAGACAAG 57.663 55.556 20.65 0.00 46.50 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.