Multiple sequence alignment - TraesCS1B01G164200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G164200 chr1B 100.000 3338 0 0 1 3338 286613791 286610454 0.000000e+00 6165.0
1 TraesCS1B01G164200 chr1B 96.721 61 2 0 1 61 288976537 288976477 5.890000e-18 102.0
2 TraesCS1B01G164200 chr1D 95.083 2461 96 9 1 2448 199844776 199842328 0.000000e+00 3851.0
3 TraesCS1B01G164200 chr1D 83.613 537 39 24 2462 2975 199842343 199841833 3.030000e-125 459.0
4 TraesCS1B01G164200 chr1D 90.301 299 21 5 3022 3317 199841847 199841554 5.220000e-103 385.0
5 TraesCS1B01G164200 chr1D 91.489 47 4 0 2976 3022 314116437 314116391 7.730000e-07 65.8
6 TraesCS1B01G164200 chr1A 96.309 2330 60 11 136 2448 252325168 252322848 0.000000e+00 3803.0
7 TraesCS1B01G164200 chr1A 94.961 516 21 5 2462 2975 252322863 252322351 0.000000e+00 804.0
8 TraesCS1B01G164200 chr1A 96.127 284 8 1 3022 3305 252322365 252322085 8.440000e-126 460.0
9 TraesCS1B01G164200 chr1A 93.793 145 9 0 1 145 252325579 252325435 5.610000e-53 219.0
10 TraesCS1B01G164200 chr2D 95.745 47 2 0 2975 3021 619267508 619267462 3.570000e-10 76.8
11 TraesCS1B01G164200 chr3D 94.000 50 1 2 2974 3022 93175808 93175760 1.280000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G164200 chr1B 286610454 286613791 3337 True 6165.0 6165 100.000000 1 3338 1 chr1B.!!$R1 3337
1 TraesCS1B01G164200 chr1D 199841554 199844776 3222 True 1565.0 3851 89.665667 1 3317 3 chr1D.!!$R2 3316
2 TraesCS1B01G164200 chr1A 252322085 252325579 3494 True 1321.5 3803 95.297500 1 3305 4 chr1A.!!$R1 3304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 953 1.270550 CGGCAAATCACAAAGCTTCCT 59.729 47.619 0.00 0.0 0.00 3.36 F
2097 2401 1.462731 TTGGAATTGCAAGGCAGCGT 61.463 50.000 8.47 0.0 40.61 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2621 1.552792 TCAGGCATTATGTGTGGACGA 59.447 47.619 0.00 0.0 0.0 4.20 R
2981 3312 0.303493 CGCTTGCGTTGTACTGTGTT 59.697 50.000 6.86 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.306088 CCAGGTCTACGTTGACAACAGAT 60.306 47.826 27.06 5.67 38.61 2.90
202 479 3.925630 ATGCTGGCGTTGACCTGGG 62.926 63.158 0.00 0.00 0.00 4.45
329 606 7.004555 TCTTCACCAGTTAGCTCAAATCTTA 57.995 36.000 0.00 0.00 0.00 2.10
344 621 1.604604 TCTTAAGCAGTGGTTGTGGC 58.395 50.000 17.67 0.00 0.00 5.01
423 720 7.496263 CCCTTTAACTTCTTCTATGTTCCTAGC 59.504 40.741 0.00 0.00 0.00 3.42
427 724 2.317040 TCTTCTATGTTCCTAGCGGGG 58.683 52.381 0.00 0.00 35.33 5.73
459 756 5.199024 TGTTGCTGTCTTGTAATGCAAAT 57.801 34.783 0.00 0.00 43.72 2.32
594 894 9.476202 TGACAACATCATATTTCTTAGATACGG 57.524 33.333 0.00 0.00 29.99 4.02
595 895 9.692749 GACAACATCATATTTCTTAGATACGGA 57.307 33.333 0.00 0.00 0.00 4.69
596 896 9.698309 ACAACATCATATTTCTTAGATACGGAG 57.302 33.333 0.00 0.00 0.00 4.63
640 940 7.435192 GCATATTAAAGTTAGCTTTCGGCAAAT 59.565 33.333 7.93 5.26 43.28 2.32
653 953 1.270550 CGGCAAATCACAAAGCTTCCT 59.729 47.619 0.00 0.00 0.00 3.36
665 965 6.267471 TCACAAAGCTTCCTGAACCAAATTAT 59.733 34.615 0.00 0.00 0.00 1.28
784 1084 8.589335 TTAAGCAGATAGTTAATGATTCGGTC 57.411 34.615 0.00 0.00 0.00 4.79
979 1283 8.511321 GTTGTAACATTGATTCATACCTTCACA 58.489 33.333 0.00 0.00 0.00 3.58
1005 1309 6.627087 TTCAAGACAGAGATAAGAATGGGT 57.373 37.500 0.00 0.00 0.00 4.51
1316 1620 3.001736 GCGATCTATTTTCTGCTGACACC 59.998 47.826 0.00 0.00 0.00 4.16
1881 2185 4.879598 ACAAACCTTAGGAGTAGTTCACG 58.120 43.478 4.77 0.00 0.00 4.35
2097 2401 1.462731 TTGGAATTGCAAGGCAGCGT 61.463 50.000 8.47 0.00 40.61 5.07
2166 2470 4.021925 GTGCCTGGGACTTCCGCT 62.022 66.667 11.48 0.00 38.76 5.52
2262 2566 1.856265 CTGCAGTTTTCCTCCCGCAC 61.856 60.000 5.25 0.00 0.00 5.34
2317 2621 4.946157 AGATTCGCAATGGATTTCTTCAGT 59.054 37.500 0.00 0.00 0.00 3.41
2448 2752 7.021196 GCGTGATAATATTGTGTGAGTTTGTT 58.979 34.615 0.00 0.00 0.00 2.83
2449 2753 7.537306 GCGTGATAATATTGTGTGAGTTTGTTT 59.463 33.333 0.00 0.00 0.00 2.83
2450 2754 9.393249 CGTGATAATATTGTGTGAGTTTGTTTT 57.607 29.630 0.00 0.00 0.00 2.43
2474 2778 8.522178 TTTTTGAAACGTTATTGTGTGAGTTT 57.478 26.923 0.00 0.00 34.95 2.66
2475 2779 7.499438 TTTGAAACGTTATTGTGTGAGTTTG 57.501 32.000 0.00 0.00 32.79 2.93
2476 2780 6.184580 TGAAACGTTATTGTGTGAGTTTGT 57.815 33.333 0.00 0.00 32.79 2.83
2594 2901 2.852449 AGAAAATGGAGCATGGGGACTA 59.148 45.455 0.00 0.00 0.00 2.59
2749 3058 6.929625 TCTTAGTCTCACTGAATTTCCTCAG 58.070 40.000 0.00 0.00 46.94 3.35
2843 3152 9.897744 TTTAAAACTTGTAATCAGAAGCATCAG 57.102 29.630 0.00 0.00 0.00 2.90
2848 3157 7.161404 ACTTGTAATCAGAAGCATCAGTGTTA 58.839 34.615 0.00 0.00 0.00 2.41
2861 3170 7.112122 AGCATCAGTGTTAGTGGATCATTAAA 58.888 34.615 0.00 0.00 0.00 1.52
2875 3206 7.438459 GTGGATCATTAAATTAGCTCAGTACGT 59.562 37.037 0.00 0.00 0.00 3.57
2932 3263 5.179555 GTGGGAAAGTGAACAGTTATCAGTC 59.820 44.000 0.00 0.00 30.27 3.51
2961 3292 9.944376 GATATGAATATTAGCTTAACCTCACCA 57.056 33.333 0.00 0.00 0.00 4.17
2963 3294 7.859325 TGAATATTAGCTTAACCTCACCAAC 57.141 36.000 0.00 0.00 0.00 3.77
2964 3295 6.826741 TGAATATTAGCTTAACCTCACCAACC 59.173 38.462 0.00 0.00 0.00 3.77
2965 3296 4.650972 ATTAGCTTAACCTCACCAACCA 57.349 40.909 0.00 0.00 0.00 3.67
2966 3297 4.440826 TTAGCTTAACCTCACCAACCAA 57.559 40.909 0.00 0.00 0.00 3.67
2967 3298 3.306472 AGCTTAACCTCACCAACCAAA 57.694 42.857 0.00 0.00 0.00 3.28
2968 3299 3.637769 AGCTTAACCTCACCAACCAAAA 58.362 40.909 0.00 0.00 0.00 2.44
2969 3300 4.027437 AGCTTAACCTCACCAACCAAAAA 58.973 39.130 0.00 0.00 0.00 1.94
2970 3301 4.099419 AGCTTAACCTCACCAACCAAAAAG 59.901 41.667 0.00 0.00 0.00 2.27
2971 3302 4.098807 GCTTAACCTCACCAACCAAAAAGA 59.901 41.667 0.00 0.00 0.00 2.52
2972 3303 5.736207 GCTTAACCTCACCAACCAAAAAGAG 60.736 44.000 0.00 0.00 0.00 2.85
2973 3304 3.382083 ACCTCACCAACCAAAAAGAGT 57.618 42.857 0.00 0.00 0.00 3.24
2974 3305 3.708451 ACCTCACCAACCAAAAAGAGTT 58.292 40.909 0.00 0.00 0.00 3.01
2975 3306 4.093743 ACCTCACCAACCAAAAAGAGTTT 58.906 39.130 0.00 0.00 0.00 2.66
2976 3307 4.530553 ACCTCACCAACCAAAAAGAGTTTT 59.469 37.500 0.00 0.00 37.43 2.43
2977 3308 5.012664 ACCTCACCAACCAAAAAGAGTTTTT 59.987 36.000 0.00 0.00 43.20 1.94
2996 3327 4.421033 TTTTTCAACACAGTACAACGCA 57.579 36.364 0.00 0.00 0.00 5.24
2997 3328 4.421033 TTTTCAACACAGTACAACGCAA 57.579 36.364 0.00 0.00 0.00 4.85
2999 3330 1.329292 TCAACACAGTACAACGCAAGC 59.671 47.619 0.00 0.00 45.62 4.01
3000 3331 0.303493 AACACAGTACAACGCAAGCG 59.697 50.000 13.50 13.50 46.03 4.68
3001 3332 1.438710 CACAGTACAACGCAAGCGC 60.439 57.895 15.09 0.00 44.19 5.92
3002 3333 1.594293 ACAGTACAACGCAAGCGCT 60.594 52.632 15.09 2.64 44.19 5.92
3003 3334 1.130613 CAGTACAACGCAAGCGCTC 59.869 57.895 12.06 0.00 44.19 5.03
3004 3335 1.300620 AGTACAACGCAAGCGCTCA 60.301 52.632 12.06 0.00 44.19 4.26
3005 3336 0.670546 AGTACAACGCAAGCGCTCAT 60.671 50.000 12.06 0.00 44.19 2.90
3006 3337 0.996462 GTACAACGCAAGCGCTCATA 59.004 50.000 12.06 0.00 44.19 2.15
3007 3338 1.593006 GTACAACGCAAGCGCTCATAT 59.407 47.619 12.06 0.00 44.19 1.78
3008 3339 1.934589 ACAACGCAAGCGCTCATATA 58.065 45.000 12.06 0.00 44.19 0.86
3009 3340 2.483876 ACAACGCAAGCGCTCATATAT 58.516 42.857 12.06 0.00 44.19 0.86
3010 3341 3.649073 ACAACGCAAGCGCTCATATATA 58.351 40.909 12.06 0.00 44.19 0.86
3011 3342 4.245660 ACAACGCAAGCGCTCATATATAT 58.754 39.130 12.06 0.00 44.19 0.86
3012 3343 4.091945 ACAACGCAAGCGCTCATATATATG 59.908 41.667 12.06 15.47 44.19 1.78
3013 3344 2.604914 ACGCAAGCGCTCATATATATGC 59.395 45.455 12.06 13.77 44.19 3.14
3014 3345 2.033407 CGCAAGCGCTCATATATATGCC 60.033 50.000 12.06 9.67 35.30 4.40
3015 3346 2.289002 GCAAGCGCTCATATATATGCCC 59.711 50.000 12.06 9.36 33.76 5.36
3016 3347 3.534554 CAAGCGCTCATATATATGCCCA 58.465 45.455 12.06 0.78 33.76 5.36
3017 3348 4.132336 CAAGCGCTCATATATATGCCCAT 58.868 43.478 12.06 0.79 33.76 4.00
3018 3349 5.299949 CAAGCGCTCATATATATGCCCATA 58.700 41.667 12.06 0.10 33.76 2.74
3019 3350 4.887748 AGCGCTCATATATATGCCCATAC 58.112 43.478 16.59 5.36 33.76 2.39
3020 3351 4.344968 AGCGCTCATATATATGCCCATACA 59.655 41.667 16.59 0.00 33.76 2.29
3089 3420 3.688272 CAAGACATGATCCATTTCGCAC 58.312 45.455 0.00 0.00 0.00 5.34
3090 3421 2.292267 AGACATGATCCATTTCGCACC 58.708 47.619 0.00 0.00 0.00 5.01
3091 3422 2.016318 GACATGATCCATTTCGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
3119 3450 3.303881 TCATTTCAGACACCGAGTGAG 57.696 47.619 10.46 1.78 36.96 3.51
3226 3559 7.678947 AGTCATTGGCAGTATGATAATTAGC 57.321 36.000 5.24 0.00 39.69 3.09
3326 3660 9.262240 TGCAATATAGTATATACCTAACAGCCA 57.738 33.333 9.32 0.00 0.00 4.75
3332 3666 7.246171 AGTATATACCTAACAGCCAAGATGG 57.754 40.000 9.32 0.00 41.55 3.51
3333 3667 3.864789 ATACCTAACAGCCAAGATGGG 57.135 47.619 0.00 0.00 38.19 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.422576 GTCAACGTAGACCTGGCATTAATGC 62.423 48.000 28.68 28.68 41.50 3.56
21 22 0.753867 TTGTCAACGTAGACCTGGCA 59.246 50.000 0.00 0.00 37.73 4.92
202 479 4.137116 TGAGTAGTTGGGTCATATGTGC 57.863 45.455 1.90 0.00 0.00 4.57
203 480 5.674525 ACATGAGTAGTTGGGTCATATGTG 58.325 41.667 0.00 0.00 29.64 3.21
329 606 3.595758 GCGCCACAACCACTGCTT 61.596 61.111 0.00 0.00 0.00 3.91
423 720 2.874701 CAGCAACATAATCTCTTCCCCG 59.125 50.000 0.00 0.00 0.00 5.73
427 724 6.734104 ACAAGACAGCAACATAATCTCTTC 57.266 37.500 0.00 0.00 0.00 2.87
459 756 9.639563 TTGAAGGATGGATAAGTTATTGCATTA 57.360 29.630 0.00 0.00 0.00 1.90
499 796 6.338146 TCGATTTAATTTCATCTCAGACGGT 58.662 36.000 0.00 0.00 0.00 4.83
590 890 8.205512 TGCCAATATATTGAAAGTTACTCCGTA 58.794 33.333 24.17 2.58 40.14 4.02
591 891 7.051623 TGCCAATATATTGAAAGTTACTCCGT 58.948 34.615 24.17 0.00 40.14 4.69
592 892 7.490962 TGCCAATATATTGAAAGTTACTCCG 57.509 36.000 24.17 6.35 40.14 4.63
640 940 2.727123 TGGTTCAGGAAGCTTTGTGA 57.273 45.000 0.00 3.84 39.38 3.58
724 1024 4.245845 TGCTGGGTTTTCCGTTTATTTC 57.754 40.909 0.00 0.00 41.82 2.17
728 1028 4.767928 ACATATTGCTGGGTTTTCCGTTTA 59.232 37.500 0.00 0.00 41.82 2.01
734 1034 6.280855 AGGTTAACATATTGCTGGGTTTTC 57.719 37.500 8.10 0.00 0.00 2.29
979 1283 7.108847 CCCATTCTTATCTCTGTCTTGAAACT 58.891 38.462 0.00 0.00 0.00 2.66
1005 1309 4.584874 TGCCTATTGCTGCAACTAGTTTA 58.415 39.130 18.51 4.13 42.00 2.01
1881 2185 6.998802 AGATCAGCTATATCAACACCCTAAC 58.001 40.000 10.08 0.00 0.00 2.34
2097 2401 2.057137 GGCCATCAACTATTGCCTGA 57.943 50.000 0.00 0.00 42.07 3.86
2166 2470 4.536090 AGAACCAAGTCCATCACATCCTTA 59.464 41.667 0.00 0.00 0.00 2.69
2317 2621 1.552792 TCAGGCATTATGTGTGGACGA 59.447 47.619 0.00 0.00 0.00 4.20
2449 2753 8.428536 CAAACTCACACAATAACGTTTCAAAAA 58.571 29.630 5.91 0.00 0.00 1.94
2450 2754 7.595502 ACAAACTCACACAATAACGTTTCAAAA 59.404 29.630 5.91 0.00 0.00 2.44
2451 2755 7.061210 CACAAACTCACACAATAACGTTTCAAA 59.939 33.333 5.91 0.00 0.00 2.69
2452 2756 6.524933 CACAAACTCACACAATAACGTTTCAA 59.475 34.615 5.91 0.00 0.00 2.69
2453 2757 6.024664 CACAAACTCACACAATAACGTTTCA 58.975 36.000 5.91 0.00 0.00 2.69
2454 2758 6.193959 GTCACAAACTCACACAATAACGTTTC 59.806 38.462 5.91 0.00 0.00 2.78
2455 2759 6.025280 GTCACAAACTCACACAATAACGTTT 58.975 36.000 5.91 0.00 0.00 3.60
2456 2760 5.353123 AGTCACAAACTCACACAATAACGTT 59.647 36.000 5.88 5.88 30.02 3.99
2457 2761 4.873827 AGTCACAAACTCACACAATAACGT 59.126 37.500 0.00 0.00 30.02 3.99
2458 2762 5.403897 AGTCACAAACTCACACAATAACG 57.596 39.130 0.00 0.00 30.02 3.18
2459 2763 6.468956 CACAAGTCACAAACTCACACAATAAC 59.531 38.462 0.00 0.00 37.17 1.89
2460 2764 6.372937 TCACAAGTCACAAACTCACACAATAA 59.627 34.615 0.00 0.00 37.17 1.40
2461 2765 5.877564 TCACAAGTCACAAACTCACACAATA 59.122 36.000 0.00 0.00 37.17 1.90
2462 2766 4.699735 TCACAAGTCACAAACTCACACAAT 59.300 37.500 0.00 0.00 37.17 2.71
2463 2767 4.068599 TCACAAGTCACAAACTCACACAA 58.931 39.130 0.00 0.00 37.17 3.33
2464 2768 3.669536 TCACAAGTCACAAACTCACACA 58.330 40.909 0.00 0.00 37.17 3.72
2465 2769 3.932710 TCTCACAAGTCACAAACTCACAC 59.067 43.478 0.00 0.00 37.17 3.82
2466 2770 4.200838 TCTCACAAGTCACAAACTCACA 57.799 40.909 0.00 0.00 37.17 3.58
2467 2771 6.870965 AGATATCTCACAAGTCACAAACTCAC 59.129 38.462 0.00 0.00 37.17 3.51
2468 2772 6.997655 AGATATCTCACAAGTCACAAACTCA 58.002 36.000 0.00 0.00 37.17 3.41
2469 2773 8.029522 TGTAGATATCTCACAAGTCACAAACTC 58.970 37.037 8.95 0.00 37.17 3.01
2470 2774 7.896811 TGTAGATATCTCACAAGTCACAAACT 58.103 34.615 8.95 0.00 41.10 2.66
2471 2775 8.534333 TTGTAGATATCTCACAAGTCACAAAC 57.466 34.615 8.95 0.00 0.00 2.93
2472 2776 9.554395 TTTTGTAGATATCTCACAAGTCACAAA 57.446 29.630 16.63 16.63 33.96 2.83
2473 2777 9.208022 CTTTTGTAGATATCTCACAAGTCACAA 57.792 33.333 8.95 8.75 33.96 3.33
2474 2778 7.331934 GCTTTTGTAGATATCTCACAAGTCACA 59.668 37.037 8.95 2.49 33.96 3.58
2475 2779 7.547370 AGCTTTTGTAGATATCTCACAAGTCAC 59.453 37.037 8.95 0.00 33.96 3.67
2476 2780 7.615403 AGCTTTTGTAGATATCTCACAAGTCA 58.385 34.615 8.95 2.14 33.96 3.41
2574 2881 2.149973 AGTCCCCATGCTCCATTTTC 57.850 50.000 0.00 0.00 0.00 2.29
2594 2901 8.587608 ACAACAATCATTCAATACATCCACTTT 58.412 29.630 0.00 0.00 0.00 2.66
2749 3058 2.099141 TGATTGTGAGTGGTGCTAGC 57.901 50.000 8.10 8.10 0.00 3.42
2825 3134 7.118245 CACTAACACTGATGCTTCTGATTACAA 59.882 37.037 12.54 0.00 0.00 2.41
2843 3152 9.109393 TGAGCTAATTTAATGATCCACTAACAC 57.891 33.333 0.00 0.00 0.00 3.32
2848 3157 7.653713 CGTACTGAGCTAATTTAATGATCCACT 59.346 37.037 0.00 0.00 0.00 4.00
2861 3170 3.254060 CTGTGCAACGTACTGAGCTAAT 58.746 45.455 0.00 0.00 42.39 1.73
2875 3206 3.637432 CCGTTTGATTTAAGCTGTGCAA 58.363 40.909 0.00 0.00 0.00 4.08
2975 3306 4.421033 TGCGTTGTACTGTGTTGAAAAA 57.579 36.364 0.00 0.00 0.00 1.94
2976 3307 4.407818 CTTGCGTTGTACTGTGTTGAAAA 58.592 39.130 0.00 0.00 0.00 2.29
2977 3308 3.729462 GCTTGCGTTGTACTGTGTTGAAA 60.729 43.478 0.00 0.00 0.00 2.69
2978 3309 2.223157 GCTTGCGTTGTACTGTGTTGAA 60.223 45.455 0.00 0.00 0.00 2.69
2979 3310 1.329292 GCTTGCGTTGTACTGTGTTGA 59.671 47.619 0.00 0.00 0.00 3.18
2980 3311 1.741993 GCTTGCGTTGTACTGTGTTG 58.258 50.000 0.00 0.00 0.00 3.33
2981 3312 0.303493 CGCTTGCGTTGTACTGTGTT 59.697 50.000 6.86 0.00 0.00 3.32
2982 3313 1.931551 CGCTTGCGTTGTACTGTGT 59.068 52.632 6.86 0.00 0.00 3.72
2983 3314 1.438710 GCGCTTGCGTTGTACTGTG 60.439 57.895 16.38 0.00 0.00 3.66
2984 3315 1.557443 GAGCGCTTGCGTTGTACTGT 61.557 55.000 13.26 0.00 45.69 3.55
2985 3316 1.130613 GAGCGCTTGCGTTGTACTG 59.869 57.895 13.26 0.00 45.69 2.74
2986 3317 0.670546 ATGAGCGCTTGCGTTGTACT 60.671 50.000 13.26 4.45 45.69 2.73
2987 3318 0.996462 TATGAGCGCTTGCGTTGTAC 59.004 50.000 13.26 0.00 45.69 2.90
2988 3319 1.934589 ATATGAGCGCTTGCGTTGTA 58.065 45.000 13.26 6.47 45.69 2.41
2989 3320 1.934589 TATATGAGCGCTTGCGTTGT 58.065 45.000 13.26 4.53 45.69 3.32
2990 3321 4.571889 CATATATATGAGCGCTTGCGTTG 58.428 43.478 13.26 0.00 45.69 4.10
2991 3322 3.062639 GCATATATATGAGCGCTTGCGTT 59.937 43.478 24.06 10.61 37.67 4.84
2992 3323 2.604914 GCATATATATGAGCGCTTGCGT 59.395 45.455 24.06 3.24 37.67 5.24
2993 3324 2.033407 GGCATATATATGAGCGCTTGCG 60.033 50.000 24.06 10.90 37.67 4.85
2994 3325 2.289002 GGGCATATATATGAGCGCTTGC 59.711 50.000 24.06 15.03 35.75 4.01
2995 3326 3.534554 TGGGCATATATATGAGCGCTTG 58.465 45.455 24.06 3.84 40.16 4.01
2996 3327 3.912496 TGGGCATATATATGAGCGCTT 57.088 42.857 24.06 0.00 40.16 4.68
2997 3328 4.344968 TGTATGGGCATATATATGAGCGCT 59.655 41.667 24.06 11.27 40.16 5.92
2998 3329 4.449068 GTGTATGGGCATATATATGAGCGC 59.551 45.833 24.06 17.70 39.95 5.92
2999 3330 5.600696 TGTGTATGGGCATATATATGAGCG 58.399 41.667 24.06 0.56 35.75 5.03
3000 3331 6.260936 GGTTGTGTATGGGCATATATATGAGC 59.739 42.308 24.06 11.02 35.75 4.26
3001 3332 7.337938 TGGTTGTGTATGGGCATATATATGAG 58.662 38.462 24.06 1.61 35.75 2.90
3002 3333 7.264294 TGGTTGTGTATGGGCATATATATGA 57.736 36.000 24.06 6.04 35.75 2.15
3003 3334 7.936496 TTGGTTGTGTATGGGCATATATATG 57.064 36.000 17.01 17.01 36.78 1.78
3004 3335 8.948401 TTTTGGTTGTGTATGGGCATATATAT 57.052 30.769 0.00 0.00 0.00 0.86
3005 3336 8.768501 TTTTTGGTTGTGTATGGGCATATATA 57.231 30.769 0.00 0.00 0.00 0.86
3006 3337 7.563188 TCTTTTTGGTTGTGTATGGGCATATAT 59.437 33.333 0.00 0.00 0.00 0.86
3007 3338 6.892456 TCTTTTTGGTTGTGTATGGGCATATA 59.108 34.615 0.00 0.00 0.00 0.86
3008 3339 5.719085 TCTTTTTGGTTGTGTATGGGCATAT 59.281 36.000 0.00 0.00 0.00 1.78
3009 3340 5.080337 TCTTTTTGGTTGTGTATGGGCATA 58.920 37.500 0.00 0.00 0.00 3.14
3010 3341 3.900601 TCTTTTTGGTTGTGTATGGGCAT 59.099 39.130 0.00 0.00 0.00 4.40
3011 3342 3.300388 TCTTTTTGGTTGTGTATGGGCA 58.700 40.909 0.00 0.00 0.00 5.36
3012 3343 3.320826 ACTCTTTTTGGTTGTGTATGGGC 59.679 43.478 0.00 0.00 0.00 5.36
3013 3344 5.529581 AACTCTTTTTGGTTGTGTATGGG 57.470 39.130 0.00 0.00 0.00 4.00
3014 3345 6.149633 GCTAACTCTTTTTGGTTGTGTATGG 58.850 40.000 0.00 0.00 0.00 2.74
3015 3346 6.734137 TGCTAACTCTTTTTGGTTGTGTATG 58.266 36.000 0.00 0.00 0.00 2.39
3016 3347 6.952773 TGCTAACTCTTTTTGGTTGTGTAT 57.047 33.333 0.00 0.00 0.00 2.29
3017 3348 6.183360 CCTTGCTAACTCTTTTTGGTTGTGTA 60.183 38.462 0.00 0.00 0.00 2.90
3018 3349 5.394115 CCTTGCTAACTCTTTTTGGTTGTGT 60.394 40.000 0.00 0.00 0.00 3.72
3019 3350 5.043248 CCTTGCTAACTCTTTTTGGTTGTG 58.957 41.667 0.00 0.00 0.00 3.33
3020 3351 4.441495 GCCTTGCTAACTCTTTTTGGTTGT 60.441 41.667 0.00 0.00 0.00 3.32
3089 3420 4.336433 GGTGTCTGAAATGATATGTGGTGG 59.664 45.833 0.00 0.00 0.00 4.61
3090 3421 4.034394 CGGTGTCTGAAATGATATGTGGTG 59.966 45.833 0.00 0.00 0.00 4.17
3091 3422 4.081142 TCGGTGTCTGAAATGATATGTGGT 60.081 41.667 0.00 0.00 0.00 4.16
3119 3450 6.634805 TGATCTCTTCAGTGTGAGTTTATCC 58.365 40.000 12.89 0.00 0.00 2.59
3138 3469 7.134362 ACTACAGACAATGATCCAATGATCT 57.866 36.000 4.39 0.00 46.34 2.75
3165 3498 8.730680 CCTATGTAGTTCAAAATGTGCTTAAGT 58.269 33.333 4.02 0.00 0.00 2.24
3226 3559 1.143838 TTGATCATCTCCCGTGCCG 59.856 57.895 0.00 0.00 0.00 5.69
3309 3643 6.407202 CCCATCTTGGCTGTTAGGTATATAC 58.593 44.000 4.14 4.14 35.79 1.47
3310 3644 6.620877 CCCATCTTGGCTGTTAGGTATATA 57.379 41.667 0.00 0.00 35.79 0.86
3311 3645 5.505181 CCCATCTTGGCTGTTAGGTATAT 57.495 43.478 0.00 0.00 35.79 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.