Multiple sequence alignment - TraesCS1B01G163600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G163600 chr1B 100.000 2378 0 0 1 2378 286025992 286023615 0.000000e+00 4392
1 TraesCS1B01G163600 chr1B 94.466 2024 107 5 356 2378 286167347 286169366 0.000000e+00 3112
2 TraesCS1B01G163600 chr4D 95.850 2024 79 4 356 2378 483697116 483699135 0.000000e+00 3267
3 TraesCS1B01G163600 chr4D 95.200 2021 92 5 359 2378 135005461 135003445 0.000000e+00 3190
4 TraesCS1B01G163600 chr4D 94.260 2021 112 4 359 2378 241142485 241140468 0.000000e+00 3086
5 TraesCS1B01G163600 chr4D 96.399 361 13 0 1 361 123663985 123663625 1.570000e-166 595
6 TraesCS1B01G163600 chr5D 94.071 2024 116 4 356 2378 79866012 79868032 0.000000e+00 3070
7 TraesCS1B01G163600 chr5D 92.829 2022 133 11 359 2378 197839138 197837127 0.000000e+00 2920
8 TraesCS1B01G163600 chr7A 93.975 2025 119 3 356 2378 571648192 571650215 0.000000e+00 3061
9 TraesCS1B01G163600 chr1D 95.588 1224 51 3 1156 2378 185763590 185764811 0.000000e+00 1958
10 TraesCS1B01G163600 chr6B 94.418 1272 63 4 356 1627 53079772 53081035 0.000000e+00 1949
11 TraesCS1B01G163600 chr3A 96.060 1142 45 0 356 1497 191856306 191857447 0.000000e+00 1860
12 TraesCS1B01G163600 chr7B 97.065 920 25 2 1460 2378 743080627 743081545 0.000000e+00 1548
13 TraesCS1B01G163600 chrUn 96.399 361 13 0 1 361 399834776 399834416 1.570000e-166 595
14 TraesCS1B01G163600 chrUn 96.122 361 14 0 1 361 182414668 182414308 7.320000e-165 590
15 TraesCS1B01G163600 chrUn 96.122 361 14 0 1 361 237257488 237257128 7.320000e-165 590
16 TraesCS1B01G163600 chrUn 96.122 361 14 0 1 361 448235012 448235372 7.320000e-165 590
17 TraesCS1B01G163600 chr7D 96.399 361 13 0 1 361 579015920 579016280 1.570000e-166 595
18 TraesCS1B01G163600 chr2D 96.399 361 13 0 1 361 642938143 642938503 1.570000e-166 595
19 TraesCS1B01G163600 chr1A 96.399 361 13 0 1 361 238154788 238154428 1.570000e-166 595
20 TraesCS1B01G163600 chr1A 96.122 361 14 0 1 361 278506688 278507048 7.320000e-165 590


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G163600 chr1B 286023615 286025992 2377 True 4392 4392 100.000 1 2378 1 chr1B.!!$R1 2377
1 TraesCS1B01G163600 chr1B 286167347 286169366 2019 False 3112 3112 94.466 356 2378 1 chr1B.!!$F1 2022
2 TraesCS1B01G163600 chr4D 483697116 483699135 2019 False 3267 3267 95.850 356 2378 1 chr4D.!!$F1 2022
3 TraesCS1B01G163600 chr4D 135003445 135005461 2016 True 3190 3190 95.200 359 2378 1 chr4D.!!$R2 2019
4 TraesCS1B01G163600 chr4D 241140468 241142485 2017 True 3086 3086 94.260 359 2378 1 chr4D.!!$R3 2019
5 TraesCS1B01G163600 chr5D 79866012 79868032 2020 False 3070 3070 94.071 356 2378 1 chr5D.!!$F1 2022
6 TraesCS1B01G163600 chr5D 197837127 197839138 2011 True 2920 2920 92.829 359 2378 1 chr5D.!!$R1 2019
7 TraesCS1B01G163600 chr7A 571648192 571650215 2023 False 3061 3061 93.975 356 2378 1 chr7A.!!$F1 2022
8 TraesCS1B01G163600 chr1D 185763590 185764811 1221 False 1958 1958 95.588 1156 2378 1 chr1D.!!$F1 1222
9 TraesCS1B01G163600 chr6B 53079772 53081035 1263 False 1949 1949 94.418 356 1627 1 chr6B.!!$F1 1271
10 TraesCS1B01G163600 chr3A 191856306 191857447 1141 False 1860 1860 96.060 356 1497 1 chr3A.!!$F1 1141
11 TraesCS1B01G163600 chr7B 743080627 743081545 918 False 1548 1548 97.065 1460 2378 1 chr7B.!!$F1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.035439 AAATTGATGGAGTCCGCCGT 60.035 50.0 4.3 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1593 0.183492 ATTGCCCATACCGACAGCAT 59.817 50.0 0.0 0.0 32.67 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.728922 GCTTACGTAGTGGATCTTCGG 58.271 52.381 0.00 0.00 45.73 4.30
21 22 2.543238 GCTTACGTAGTGGATCTTCGGG 60.543 54.545 0.00 0.00 45.73 5.14
22 23 1.027357 TACGTAGTGGATCTTCGGGC 58.973 55.000 0.00 0.00 45.73 6.13
23 24 0.968901 ACGTAGTGGATCTTCGGGCA 60.969 55.000 0.00 0.00 42.51 5.36
24 25 0.174845 CGTAGTGGATCTTCGGGCAA 59.825 55.000 0.00 0.00 34.21 4.52
25 26 1.653151 GTAGTGGATCTTCGGGCAAC 58.347 55.000 0.00 0.00 0.00 4.17
38 39 3.302344 GCAACCAACCCGGCACAT 61.302 61.111 0.00 0.00 39.03 3.21
39 40 2.961768 CAACCAACCCGGCACATC 59.038 61.111 0.00 0.00 39.03 3.06
40 41 2.282887 AACCAACCCGGCACATCC 60.283 61.111 0.00 0.00 39.03 3.51
41 42 3.140073 AACCAACCCGGCACATCCA 62.140 57.895 0.00 0.00 39.03 3.41
42 43 2.282816 CCAACCCGGCACATCCAA 60.283 61.111 0.00 0.00 34.01 3.53
43 44 1.682005 CCAACCCGGCACATCCAAT 60.682 57.895 0.00 0.00 34.01 3.16
44 45 1.257055 CCAACCCGGCACATCCAATT 61.257 55.000 0.00 0.00 34.01 2.32
45 46 0.173255 CAACCCGGCACATCCAATTC 59.827 55.000 0.00 0.00 34.01 2.17
46 47 0.970427 AACCCGGCACATCCAATTCC 60.970 55.000 0.00 0.00 34.01 3.01
47 48 2.480610 CCCGGCACATCCAATTCCG 61.481 63.158 0.00 0.00 39.79 4.30
48 49 1.451207 CCGGCACATCCAATTCCGA 60.451 57.895 0.00 0.00 42.43 4.55
49 50 0.819259 CCGGCACATCCAATTCCGAT 60.819 55.000 0.00 0.00 42.43 4.18
50 51 0.588252 CGGCACATCCAATTCCGATC 59.412 55.000 0.00 0.00 42.43 3.69
51 52 1.679139 GGCACATCCAATTCCGATCA 58.321 50.000 0.00 0.00 34.01 2.92
52 53 2.023673 GGCACATCCAATTCCGATCAA 58.976 47.619 0.00 0.00 34.01 2.57
53 54 2.223572 GGCACATCCAATTCCGATCAAC 60.224 50.000 0.00 0.00 34.01 3.18
54 55 2.423185 GCACATCCAATTCCGATCAACA 59.577 45.455 0.00 0.00 0.00 3.33
55 56 3.119531 GCACATCCAATTCCGATCAACAA 60.120 43.478 0.00 0.00 0.00 2.83
56 57 4.414852 CACATCCAATTCCGATCAACAAC 58.585 43.478 0.00 0.00 0.00 3.32
57 58 4.156556 CACATCCAATTCCGATCAACAACT 59.843 41.667 0.00 0.00 0.00 3.16
58 59 4.766891 ACATCCAATTCCGATCAACAACTT 59.233 37.500 0.00 0.00 0.00 2.66
59 60 4.764679 TCCAATTCCGATCAACAACTTG 57.235 40.909 0.00 0.00 0.00 3.16
60 61 3.505680 TCCAATTCCGATCAACAACTTGG 59.494 43.478 0.00 0.00 34.55 3.61
61 62 3.505680 CCAATTCCGATCAACAACTTGGA 59.494 43.478 0.00 0.00 35.08 3.53
62 63 4.379813 CCAATTCCGATCAACAACTTGGAG 60.380 45.833 0.00 0.00 35.08 3.86
63 64 2.472695 TCCGATCAACAACTTGGAGG 57.527 50.000 0.00 0.00 0.00 4.30
64 65 1.697432 TCCGATCAACAACTTGGAGGT 59.303 47.619 0.00 0.00 0.00 3.85
65 66 2.901192 TCCGATCAACAACTTGGAGGTA 59.099 45.455 0.00 0.00 0.00 3.08
66 67 3.517901 TCCGATCAACAACTTGGAGGTAT 59.482 43.478 0.00 0.00 0.00 2.73
67 68 3.623060 CCGATCAACAACTTGGAGGTATG 59.377 47.826 0.00 0.00 0.00 2.39
68 69 3.623060 CGATCAACAACTTGGAGGTATGG 59.377 47.826 0.00 0.00 0.00 2.74
69 70 2.790433 TCAACAACTTGGAGGTATGGC 58.210 47.619 0.00 0.00 0.00 4.40
70 71 2.375174 TCAACAACTTGGAGGTATGGCT 59.625 45.455 0.00 0.00 0.00 4.75
71 72 2.489329 CAACAACTTGGAGGTATGGCTG 59.511 50.000 0.00 0.00 0.00 4.85
72 73 1.985159 ACAACTTGGAGGTATGGCTGA 59.015 47.619 0.00 0.00 0.00 4.26
73 74 2.026822 ACAACTTGGAGGTATGGCTGAG 60.027 50.000 0.00 0.00 0.00 3.35
74 75 1.958288 ACTTGGAGGTATGGCTGAGT 58.042 50.000 0.00 0.00 0.00 3.41
75 76 1.556911 ACTTGGAGGTATGGCTGAGTG 59.443 52.381 0.00 0.00 0.00 3.51
76 77 0.911769 TTGGAGGTATGGCTGAGTGG 59.088 55.000 0.00 0.00 0.00 4.00
77 78 1.147153 GGAGGTATGGCTGAGTGGC 59.853 63.158 0.00 0.00 42.18 5.01
78 79 1.341156 GGAGGTATGGCTGAGTGGCT 61.341 60.000 0.00 0.00 42.34 4.75
79 80 0.543749 GAGGTATGGCTGAGTGGCTT 59.456 55.000 0.00 0.00 42.34 4.35
80 81 1.762957 GAGGTATGGCTGAGTGGCTTA 59.237 52.381 0.00 0.00 42.34 3.09
81 82 2.170607 GAGGTATGGCTGAGTGGCTTAA 59.829 50.000 0.00 0.00 42.34 1.85
82 83 2.171448 AGGTATGGCTGAGTGGCTTAAG 59.829 50.000 0.00 0.00 42.34 1.85
83 84 2.565841 GTATGGCTGAGTGGCTTAAGG 58.434 52.381 4.29 0.00 42.34 2.69
84 85 0.995024 ATGGCTGAGTGGCTTAAGGT 59.005 50.000 4.29 0.00 42.34 3.50
85 86 1.651737 TGGCTGAGTGGCTTAAGGTA 58.348 50.000 4.29 0.00 42.34 3.08
86 87 2.196595 TGGCTGAGTGGCTTAAGGTAT 58.803 47.619 4.29 0.00 42.34 2.73
87 88 2.576191 TGGCTGAGTGGCTTAAGGTATT 59.424 45.455 4.29 0.00 42.34 1.89
88 89 2.945668 GGCTGAGTGGCTTAAGGTATTG 59.054 50.000 4.29 0.00 38.32 1.90
89 90 2.945668 GCTGAGTGGCTTAAGGTATTGG 59.054 50.000 4.29 0.00 0.00 3.16
90 91 3.622455 GCTGAGTGGCTTAAGGTATTGGT 60.622 47.826 4.29 0.00 0.00 3.67
91 92 4.589908 CTGAGTGGCTTAAGGTATTGGTT 58.410 43.478 4.29 0.00 0.00 3.67
92 93 4.993028 TGAGTGGCTTAAGGTATTGGTTT 58.007 39.130 4.29 0.00 0.00 3.27
93 94 4.764823 TGAGTGGCTTAAGGTATTGGTTTG 59.235 41.667 4.29 0.00 0.00 2.93
94 95 3.509967 AGTGGCTTAAGGTATTGGTTTGC 59.490 43.478 4.29 0.00 0.00 3.68
95 96 3.509967 GTGGCTTAAGGTATTGGTTTGCT 59.490 43.478 4.29 0.00 0.00 3.91
96 97 4.703093 GTGGCTTAAGGTATTGGTTTGCTA 59.297 41.667 4.29 0.00 0.00 3.49
97 98 5.184287 GTGGCTTAAGGTATTGGTTTGCTAA 59.816 40.000 4.29 0.00 0.00 3.09
98 99 5.775701 TGGCTTAAGGTATTGGTTTGCTAAA 59.224 36.000 4.29 0.00 0.00 1.85
99 100 6.439058 TGGCTTAAGGTATTGGTTTGCTAAAT 59.561 34.615 4.29 0.00 0.00 1.40
100 101 6.978659 GGCTTAAGGTATTGGTTTGCTAAATC 59.021 38.462 4.29 0.00 0.00 2.17
101 102 6.691388 GCTTAAGGTATTGGTTTGCTAAATCG 59.309 38.462 4.29 0.00 0.00 3.34
102 103 7.414762 GCTTAAGGTATTGGTTTGCTAAATCGA 60.415 37.037 4.29 0.00 0.00 3.59
103 104 5.813080 AGGTATTGGTTTGCTAAATCGAC 57.187 39.130 0.00 0.00 0.00 4.20
104 105 5.250200 AGGTATTGGTTTGCTAAATCGACA 58.750 37.500 0.00 0.00 0.00 4.35
105 106 5.885912 AGGTATTGGTTTGCTAAATCGACAT 59.114 36.000 0.00 0.00 0.00 3.06
106 107 7.051623 AGGTATTGGTTTGCTAAATCGACATA 58.948 34.615 0.00 0.00 0.00 2.29
107 108 7.012044 AGGTATTGGTTTGCTAAATCGACATAC 59.988 37.037 0.00 0.00 0.00 2.39
108 109 6.751514 ATTGGTTTGCTAAATCGACATACA 57.248 33.333 0.00 0.00 0.00 2.29
109 110 6.561737 TTGGTTTGCTAAATCGACATACAA 57.438 33.333 0.00 0.00 0.00 2.41
110 111 6.176975 TGGTTTGCTAAATCGACATACAAG 57.823 37.500 0.00 0.00 0.00 3.16
111 112 5.935206 TGGTTTGCTAAATCGACATACAAGA 59.065 36.000 0.00 0.00 0.00 3.02
112 113 6.428465 TGGTTTGCTAAATCGACATACAAGAA 59.572 34.615 0.00 0.00 0.00 2.52
113 114 6.961554 GGTTTGCTAAATCGACATACAAGAAG 59.038 38.462 0.00 0.00 0.00 2.85
114 115 7.148474 GGTTTGCTAAATCGACATACAAGAAGA 60.148 37.037 0.00 0.00 0.00 2.87
115 116 8.391106 GTTTGCTAAATCGACATACAAGAAGAT 58.609 33.333 0.00 0.00 0.00 2.40
116 117 8.492673 TTGCTAAATCGACATACAAGAAGATT 57.507 30.769 0.00 0.00 0.00 2.40
117 118 7.909267 TGCTAAATCGACATACAAGAAGATTG 58.091 34.615 0.00 0.00 0.00 2.67
118 119 7.549134 TGCTAAATCGACATACAAGAAGATTGT 59.451 33.333 0.00 0.00 36.49 2.71
119 120 9.031360 GCTAAATCGACATACAAGAAGATTGTA 57.969 33.333 3.18 3.18 38.99 2.41
122 123 9.599866 AAATCGACATACAAGAAGATTGTATCA 57.400 29.630 9.67 0.00 41.99 2.15
123 124 9.770097 AATCGACATACAAGAAGATTGTATCAT 57.230 29.630 9.67 3.01 41.99 2.45
124 125 8.579682 TCGACATACAAGAAGATTGTATCATG 57.420 34.615 9.67 5.64 41.99 3.07
125 126 7.653311 TCGACATACAAGAAGATTGTATCATGG 59.347 37.037 9.67 3.31 41.99 3.66
126 127 7.095481 CGACATACAAGAAGATTGTATCATGGG 60.095 40.741 9.67 3.02 41.99 4.00
127 128 7.577303 ACATACAAGAAGATTGTATCATGGGT 58.423 34.615 9.67 3.53 41.99 4.51
128 129 8.055181 ACATACAAGAAGATTGTATCATGGGTT 58.945 33.333 9.67 0.00 41.99 4.11
129 130 8.562892 CATACAAGAAGATTGTATCATGGGTTC 58.437 37.037 9.67 0.00 41.99 3.62
130 131 5.586243 ACAAGAAGATTGTATCATGGGTTCG 59.414 40.000 0.00 0.00 0.00 3.95
131 132 5.614324 AGAAGATTGTATCATGGGTTCGA 57.386 39.130 0.00 0.00 0.00 3.71
132 133 5.989477 AGAAGATTGTATCATGGGTTCGAA 58.011 37.500 0.00 0.00 0.00 3.71
133 134 6.595682 AGAAGATTGTATCATGGGTTCGAAT 58.404 36.000 0.00 0.00 0.00 3.34
134 135 6.708054 AGAAGATTGTATCATGGGTTCGAATC 59.292 38.462 0.00 0.00 0.00 2.52
135 136 5.308825 AGATTGTATCATGGGTTCGAATCC 58.691 41.667 21.05 21.05 0.00 3.01
136 137 3.485463 TGTATCATGGGTTCGAATCCC 57.515 47.619 24.55 23.01 44.81 3.85
143 144 2.437085 GGGTTCGAATCCCATTTCCT 57.563 50.000 17.16 0.00 44.05 3.36
144 145 2.298610 GGGTTCGAATCCCATTTCCTC 58.701 52.381 17.16 0.00 44.05 3.71
145 146 2.092375 GGGTTCGAATCCCATTTCCTCT 60.092 50.000 17.16 0.00 44.05 3.69
146 147 2.945668 GGTTCGAATCCCATTTCCTCTG 59.054 50.000 0.00 0.00 0.00 3.35
147 148 2.945668 GTTCGAATCCCATTTCCTCTGG 59.054 50.000 0.00 0.00 0.00 3.86
148 149 1.134098 TCGAATCCCATTTCCTCTGGC 60.134 52.381 0.00 0.00 32.08 4.85
149 150 1.408683 CGAATCCCATTTCCTCTGGCA 60.409 52.381 0.00 0.00 32.08 4.92
150 151 2.027385 GAATCCCATTTCCTCTGGCAC 58.973 52.381 0.00 0.00 32.08 5.01
151 152 1.002069 ATCCCATTTCCTCTGGCACA 58.998 50.000 0.00 0.00 32.08 4.57
163 164 3.906660 TGGCACAGAAGTAGAACGG 57.093 52.632 0.00 0.00 0.00 4.44
164 165 0.320374 TGGCACAGAAGTAGAACGGG 59.680 55.000 0.00 0.00 0.00 5.28
165 166 1.019805 GGCACAGAAGTAGAACGGGC 61.020 60.000 0.00 0.00 0.00 6.13
166 167 1.352156 GCACAGAAGTAGAACGGGCG 61.352 60.000 0.00 0.00 0.00 6.13
167 168 0.736325 CACAGAAGTAGAACGGGCGG 60.736 60.000 0.00 0.00 0.00 6.13
168 169 1.153628 CAGAAGTAGAACGGGCGGG 60.154 63.158 0.00 0.00 0.00 6.13
169 170 2.510918 GAAGTAGAACGGGCGGGC 60.511 66.667 0.00 0.00 0.00 6.13
170 171 4.446413 AAGTAGAACGGGCGGGCG 62.446 66.667 0.00 0.00 0.00 6.13
172 173 4.440127 GTAGAACGGGCGGGCGAA 62.440 66.667 0.00 0.00 0.00 4.70
173 174 3.693471 TAGAACGGGCGGGCGAAA 61.693 61.111 0.00 0.00 0.00 3.46
174 175 3.021473 TAGAACGGGCGGGCGAAAT 62.021 57.895 0.00 0.00 0.00 2.17
175 176 2.524951 TAGAACGGGCGGGCGAAATT 62.525 55.000 0.00 0.00 0.00 1.82
176 177 2.046120 AACGGGCGGGCGAAATTA 60.046 55.556 0.00 0.00 0.00 1.40
177 178 2.313717 GAACGGGCGGGCGAAATTAC 62.314 60.000 0.00 0.00 0.00 1.89
178 179 3.932313 CGGGCGGGCGAAATTACG 61.932 66.667 0.00 0.00 0.00 3.18
179 180 2.820922 GGGCGGGCGAAATTACGT 60.821 61.111 0.00 0.00 35.59 3.57
180 181 2.401990 GGCGGGCGAAATTACGTG 59.598 61.111 0.00 0.00 35.59 4.49
181 182 2.101835 GGCGGGCGAAATTACGTGA 61.102 57.895 0.00 0.00 35.59 4.35
182 183 1.347221 GCGGGCGAAATTACGTGAG 59.653 57.895 0.00 0.00 35.59 3.51
183 184 1.079875 GCGGGCGAAATTACGTGAGA 61.080 55.000 0.00 0.00 35.59 3.27
184 185 0.921347 CGGGCGAAATTACGTGAGAG 59.079 55.000 0.00 0.00 35.59 3.20
185 186 1.468565 CGGGCGAAATTACGTGAGAGA 60.469 52.381 0.00 0.00 35.59 3.10
186 187 2.613691 GGGCGAAATTACGTGAGAGAA 58.386 47.619 0.00 0.00 35.59 2.87
187 188 2.997986 GGGCGAAATTACGTGAGAGAAA 59.002 45.455 0.00 0.00 35.59 2.52
188 189 3.062234 GGGCGAAATTACGTGAGAGAAAG 59.938 47.826 0.00 0.00 35.59 2.62
189 190 3.924686 GGCGAAATTACGTGAGAGAAAGA 59.075 43.478 0.00 0.00 35.59 2.52
190 191 4.387862 GGCGAAATTACGTGAGAGAAAGAA 59.612 41.667 0.00 0.00 35.59 2.52
191 192 5.306590 GCGAAATTACGTGAGAGAAAGAAC 58.693 41.667 0.00 0.00 35.59 3.01
192 193 5.668132 GCGAAATTACGTGAGAGAAAGAACC 60.668 44.000 0.00 0.00 35.59 3.62
193 194 5.634020 CGAAATTACGTGAGAGAAAGAACCT 59.366 40.000 0.00 0.00 0.00 3.50
194 195 6.183359 CGAAATTACGTGAGAGAAAGAACCTC 60.183 42.308 0.00 0.00 0.00 3.85
195 196 5.723672 ATTACGTGAGAGAAAGAACCTCA 57.276 39.130 0.00 0.00 34.87 3.86
196 197 5.524971 TTACGTGAGAGAAAGAACCTCAA 57.475 39.130 0.00 0.00 38.49 3.02
197 198 4.402056 ACGTGAGAGAAAGAACCTCAAA 57.598 40.909 0.00 0.00 38.49 2.69
198 199 4.962155 ACGTGAGAGAAAGAACCTCAAAT 58.038 39.130 0.00 0.00 38.49 2.32
199 200 5.368989 ACGTGAGAGAAAGAACCTCAAATT 58.631 37.500 0.00 0.00 38.49 1.82
200 201 5.237344 ACGTGAGAGAAAGAACCTCAAATTG 59.763 40.000 0.00 0.00 38.49 2.32
201 202 5.466728 CGTGAGAGAAAGAACCTCAAATTGA 59.533 40.000 0.00 0.00 38.49 2.57
202 203 6.148480 CGTGAGAGAAAGAACCTCAAATTGAT 59.852 38.462 0.00 0.00 38.49 2.57
203 204 7.303998 GTGAGAGAAAGAACCTCAAATTGATG 58.696 38.462 0.00 0.00 38.49 3.07
204 205 6.432162 TGAGAGAAAGAACCTCAAATTGATGG 59.568 38.462 0.00 3.22 34.38 3.51
205 206 6.546484 AGAGAAAGAACCTCAAATTGATGGA 58.454 36.000 15.11 0.00 33.25 3.41
206 207 6.658391 AGAGAAAGAACCTCAAATTGATGGAG 59.342 38.462 15.11 1.16 33.25 3.86
207 208 6.310149 AGAAAGAACCTCAAATTGATGGAGT 58.690 36.000 15.11 5.71 0.00 3.85
208 209 6.432472 AGAAAGAACCTCAAATTGATGGAGTC 59.568 38.462 15.11 11.91 0.00 3.36
209 210 4.593956 AGAACCTCAAATTGATGGAGTCC 58.406 43.478 15.11 0.73 0.00 3.85
210 211 2.991250 ACCTCAAATTGATGGAGTCCG 58.009 47.619 15.11 0.00 0.00 4.79
211 212 1.672881 CCTCAAATTGATGGAGTCCGC 59.327 52.381 4.30 0.00 0.00 5.54
212 213 1.672881 CTCAAATTGATGGAGTCCGCC 59.327 52.381 4.30 0.00 0.00 6.13
213 214 0.378257 CAAATTGATGGAGTCCGCCG 59.622 55.000 4.30 0.00 0.00 6.46
214 215 0.035439 AAATTGATGGAGTCCGCCGT 60.035 50.000 4.30 0.00 0.00 5.68
215 216 0.462047 AATTGATGGAGTCCGCCGTC 60.462 55.000 4.30 2.65 42.99 4.79
216 217 2.629050 ATTGATGGAGTCCGCCGTCG 62.629 60.000 4.30 0.00 45.12 5.12
226 227 4.303853 CGCCGTCGGACAGAATAG 57.696 61.111 17.49 0.00 0.00 1.73
227 228 1.944676 CGCCGTCGGACAGAATAGC 60.945 63.158 17.49 0.00 0.00 2.97
228 229 1.437986 GCCGTCGGACAGAATAGCT 59.562 57.895 17.49 0.00 0.00 3.32
242 243 5.527951 CAGAATAGCTGCTTAGTGACTAGG 58.472 45.833 7.79 0.00 37.90 3.02
243 244 5.300539 CAGAATAGCTGCTTAGTGACTAGGA 59.699 44.000 7.79 0.00 37.90 2.94
244 245 5.534654 AGAATAGCTGCTTAGTGACTAGGAG 59.465 44.000 7.79 6.16 0.00 3.69
245 246 1.754226 AGCTGCTTAGTGACTAGGAGC 59.246 52.381 19.67 19.67 0.00 4.70
246 247 1.535015 GCTGCTTAGTGACTAGGAGCG 60.535 57.143 15.34 10.01 36.17 5.03
247 248 1.746220 CTGCTTAGTGACTAGGAGCGT 59.254 52.381 5.87 0.00 36.17 5.07
248 249 2.943690 CTGCTTAGTGACTAGGAGCGTA 59.056 50.000 5.87 0.00 36.17 4.42
249 250 2.943690 TGCTTAGTGACTAGGAGCGTAG 59.056 50.000 5.87 0.00 36.17 3.51
264 265 2.474410 CGTAGCTCCCCTTTCTTGTT 57.526 50.000 0.00 0.00 0.00 2.83
265 266 2.347731 CGTAGCTCCCCTTTCTTGTTC 58.652 52.381 0.00 0.00 0.00 3.18
266 267 2.028020 CGTAGCTCCCCTTTCTTGTTCT 60.028 50.000 0.00 0.00 0.00 3.01
267 268 3.557264 CGTAGCTCCCCTTTCTTGTTCTT 60.557 47.826 0.00 0.00 0.00 2.52
268 269 2.868899 AGCTCCCCTTTCTTGTTCTTG 58.131 47.619 0.00 0.00 0.00 3.02
269 270 1.889170 GCTCCCCTTTCTTGTTCTTGG 59.111 52.381 0.00 0.00 0.00 3.61
270 271 2.753168 GCTCCCCTTTCTTGTTCTTGGT 60.753 50.000 0.00 0.00 0.00 3.67
271 272 2.887152 CTCCCCTTTCTTGTTCTTGGTG 59.113 50.000 0.00 0.00 0.00 4.17
272 273 1.963515 CCCCTTTCTTGTTCTTGGTGG 59.036 52.381 0.00 0.00 0.00 4.61
273 274 1.341209 CCCTTTCTTGTTCTTGGTGGC 59.659 52.381 0.00 0.00 0.00 5.01
274 275 1.001378 CCTTTCTTGTTCTTGGTGGCG 60.001 52.381 0.00 0.00 0.00 5.69
275 276 1.676006 CTTTCTTGTTCTTGGTGGCGT 59.324 47.619 0.00 0.00 0.00 5.68
276 277 1.305201 TTCTTGTTCTTGGTGGCGTC 58.695 50.000 0.00 0.00 0.00 5.19
277 278 0.468226 TCTTGTTCTTGGTGGCGTCT 59.532 50.000 0.00 0.00 0.00 4.18
278 279 1.689813 TCTTGTTCTTGGTGGCGTCTA 59.310 47.619 0.00 0.00 0.00 2.59
279 280 2.301870 TCTTGTTCTTGGTGGCGTCTAT 59.698 45.455 0.00 0.00 0.00 1.98
280 281 3.512329 TCTTGTTCTTGGTGGCGTCTATA 59.488 43.478 0.00 0.00 0.00 1.31
281 282 3.520290 TGTTCTTGGTGGCGTCTATAG 57.480 47.619 0.00 0.00 0.00 1.31
282 283 2.202566 GTTCTTGGTGGCGTCTATAGC 58.797 52.381 0.00 0.00 0.00 2.97
283 284 0.384309 TCTTGGTGGCGTCTATAGCG 59.616 55.000 10.87 10.87 35.00 4.26
284 285 0.384309 CTTGGTGGCGTCTATAGCGA 59.616 55.000 17.12 0.00 35.00 4.93
285 286 0.818938 TTGGTGGCGTCTATAGCGAA 59.181 50.000 17.12 5.08 35.00 4.70
286 287 0.384309 TGGTGGCGTCTATAGCGAAG 59.616 55.000 17.12 1.29 35.00 3.79
287 288 0.666913 GGTGGCGTCTATAGCGAAGA 59.333 55.000 17.12 0.00 35.00 2.87
288 289 1.066605 GGTGGCGTCTATAGCGAAGAA 59.933 52.381 17.12 0.96 35.00 2.52
289 290 2.386249 GTGGCGTCTATAGCGAAGAAG 58.614 52.381 17.12 0.00 35.00 2.85
290 291 2.033049 GTGGCGTCTATAGCGAAGAAGA 59.967 50.000 17.12 0.00 35.00 2.87
291 292 2.033049 TGGCGTCTATAGCGAAGAAGAC 59.967 50.000 17.12 0.00 35.97 3.01
292 293 2.605097 GGCGTCTATAGCGAAGAAGACC 60.605 54.545 17.12 6.23 35.93 3.85
293 294 2.291190 GCGTCTATAGCGAAGAAGACCT 59.709 50.000 17.12 0.00 35.93 3.85
294 295 3.243134 GCGTCTATAGCGAAGAAGACCTT 60.243 47.826 17.12 0.00 35.93 3.50
295 296 4.529446 CGTCTATAGCGAAGAAGACCTTC 58.471 47.826 9.97 1.67 46.05 3.46
296 297 4.555116 CGTCTATAGCGAAGAAGACCTTCC 60.555 50.000 9.97 0.00 46.65 3.46
297 298 3.890147 TCTATAGCGAAGAAGACCTTCCC 59.110 47.826 6.17 0.00 46.65 3.97
298 299 0.815734 TAGCGAAGAAGACCTTCCCG 59.184 55.000 13.87 13.87 46.65 5.14
299 300 0.898789 AGCGAAGAAGACCTTCCCGA 60.899 55.000 19.15 0.00 46.65 5.14
300 301 0.037605 GCGAAGAAGACCTTCCCGAA 60.038 55.000 19.15 0.00 46.65 4.30
301 302 1.711206 CGAAGAAGACCTTCCCGAAC 58.289 55.000 13.28 0.44 46.65 3.95
302 303 1.000506 CGAAGAAGACCTTCCCGAACA 59.999 52.381 13.28 0.00 46.65 3.18
303 304 2.547218 CGAAGAAGACCTTCCCGAACAA 60.547 50.000 13.28 0.00 46.65 2.83
304 305 2.841442 AGAAGACCTTCCCGAACAAG 57.159 50.000 6.17 0.00 40.33 3.16
305 306 1.348036 AGAAGACCTTCCCGAACAAGG 59.652 52.381 6.17 5.68 45.41 3.61
312 313 4.074647 CCCGAACAAGGGTTGTCC 57.925 61.111 0.00 0.00 44.59 4.02
313 314 1.149627 CCCGAACAAGGGTTGTCCA 59.850 57.895 0.00 0.00 44.59 4.02
314 315 0.889186 CCCGAACAAGGGTTGTCCAG 60.889 60.000 0.00 0.00 44.59 3.86
315 316 0.179029 CCGAACAAGGGTTGTCCAGT 60.179 55.000 0.00 0.00 44.59 4.00
316 317 1.226746 CGAACAAGGGTTGTCCAGTC 58.773 55.000 0.00 0.00 44.59 3.51
317 318 1.605753 GAACAAGGGTTGTCCAGTCC 58.394 55.000 0.00 0.00 44.59 3.85
318 319 0.185175 AACAAGGGTTGTCCAGTCCC 59.815 55.000 0.00 0.00 44.59 4.46
340 341 2.103934 CGGCTCTCGGCTCTTGAG 59.896 66.667 0.00 0.00 41.46 3.02
341 342 2.498726 GGCTCTCGGCTCTTGAGG 59.501 66.667 0.00 0.00 41.46 3.86
342 343 2.055042 GGCTCTCGGCTCTTGAGGA 61.055 63.158 0.00 0.00 41.46 3.71
343 344 1.608717 GGCTCTCGGCTCTTGAGGAA 61.609 60.000 0.00 0.00 41.46 3.36
344 345 0.179113 GCTCTCGGCTCTTGAGGAAG 60.179 60.000 0.00 0.00 38.06 3.46
345 346 0.179113 CTCTCGGCTCTTGAGGAAGC 60.179 60.000 0.00 0.00 34.19 3.86
346 347 0.613292 TCTCGGCTCTTGAGGAAGCT 60.613 55.000 0.00 0.00 34.19 3.74
347 348 0.179113 CTCGGCTCTTGAGGAAGCTC 60.179 60.000 0.00 0.00 0.00 4.09
348 349 1.153469 CGGCTCTTGAGGAAGCTCC 60.153 63.158 0.00 0.00 36.58 4.70
357 358 3.706373 GGAAGCTCCTCCACCGCA 61.706 66.667 0.00 0.00 35.36 5.69
382 383 1.748493 AGAGCAAAACAAGCAACGGAA 59.252 42.857 0.00 0.00 0.00 4.30
591 593 2.439507 AGAGCAAGAGAACAAAGTGGGA 59.560 45.455 0.00 0.00 0.00 4.37
595 597 4.038402 AGCAAGAGAACAAAGTGGGATTTG 59.962 41.667 0.00 0.00 44.14 2.32
621 624 5.184864 TGATGTCGGAATTTGCACCTATTTT 59.815 36.000 0.00 0.00 0.00 1.82
678 681 1.766496 TCCACTCGGTGTTCCTTTTCT 59.234 47.619 3.82 0.00 0.00 2.52
699 702 8.506168 TTTCTATTTGCTTCCAATAGTTCGAT 57.494 30.769 0.00 0.00 0.00 3.59
746 749 0.620410 ATGTGGTTCCGATCCCTCCA 60.620 55.000 0.00 0.00 0.00 3.86
774 779 4.142337 TGCCAGAAGTCGTTTCGATATACA 60.142 41.667 0.00 0.00 40.86 2.29
840 845 3.958147 GTCACCTTTTCTTTTCCTTGGGA 59.042 43.478 0.00 0.00 0.00 4.37
878 883 4.643784 AGATTGATCTGTTTGGATCTTGGC 59.356 41.667 0.00 0.00 41.72 4.52
921 926 8.818622 TTGATTTTGATGATTGGATCTCTCTT 57.181 30.769 0.00 0.00 0.00 2.85
929 934 4.885907 TGATTGGATCTCTCTTTGAATGGC 59.114 41.667 0.00 0.00 0.00 4.40
932 937 4.863548 TGGATCTCTCTTTGAATGGCAAT 58.136 39.130 0.00 0.00 36.15 3.56
997 1003 2.850568 GGGGGAAGGACATAGGAAAGAA 59.149 50.000 0.00 0.00 0.00 2.52
1103 1111 1.065199 CCAGAAGCAAGGAGTATGCCA 60.065 52.381 0.00 0.00 44.91 4.92
1315 1323 1.742268 GAGGAGTCAAGGATTTGCTGC 59.258 52.381 0.00 0.00 34.21 5.25
1397 1405 5.287674 TGAATGGAAGATGCCTCTAGAAG 57.712 43.478 0.00 0.00 0.00 2.85
1407 1415 4.986054 TGCCTCTAGAAGTTTTGGGTTA 57.014 40.909 0.00 0.00 0.00 2.85
1455 1463 4.102681 GCTAGCTCCCTTTCCCTTATTACA 59.897 45.833 7.70 0.00 0.00 2.41
1512 1520 7.787623 AGGGCTTGACTTACTTAACTTACTA 57.212 36.000 0.00 0.00 0.00 1.82
1513 1521 7.838884 AGGGCTTGACTTACTTAACTTACTAG 58.161 38.462 0.00 0.00 0.00 2.57
1630 1638 6.842163 TCTTAAGTTCTTTGATTGATTCCGC 58.158 36.000 1.63 0.00 0.00 5.54
1664 1672 5.180810 ACCAAAGTTCCTCTAATTCCTCC 57.819 43.478 0.00 0.00 0.00 4.30
1749 1757 4.324331 GGTACCTAGCAACCTTCATTCCTT 60.324 45.833 4.06 0.00 32.72 3.36
1913 1921 0.173708 CACCTCTGACCTTCCGCTAC 59.826 60.000 0.00 0.00 0.00 3.58
2040 2048 3.297134 TTGTCTTCCTGGTCAGCTTTT 57.703 42.857 0.00 0.00 0.00 2.27
2208 2217 0.606096 TGCACTAAAGCTGCGAGGTA 59.394 50.000 0.00 0.00 37.46 3.08
2232 2241 2.976589 TGATCGAATCAGCTCTTTGCA 58.023 42.857 0.00 0.00 45.94 4.08
2348 2364 5.003692 TCATGCAGTCTAGCTCTACTTTG 57.996 43.478 0.00 0.00 34.99 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.543238 CCCGAAGATCCACTACGTAAGC 60.543 54.545 0.00 0.00 45.62 3.09
2 3 1.406539 GCCCGAAGATCCACTACGTAA 59.593 52.381 0.00 0.00 0.00 3.18
3 4 1.027357 GCCCGAAGATCCACTACGTA 58.973 55.000 0.00 0.00 0.00 3.57
4 5 0.968901 TGCCCGAAGATCCACTACGT 60.969 55.000 0.00 0.00 0.00 3.57
5 6 0.174845 TTGCCCGAAGATCCACTACG 59.825 55.000 0.00 0.00 0.00 3.51
6 7 1.653151 GTTGCCCGAAGATCCACTAC 58.347 55.000 0.00 0.00 0.00 2.73
7 8 0.539986 GGTTGCCCGAAGATCCACTA 59.460 55.000 0.00 0.00 0.00 2.74
8 9 1.299976 GGTTGCCCGAAGATCCACT 59.700 57.895 0.00 0.00 0.00 4.00
9 10 0.608035 TTGGTTGCCCGAAGATCCAC 60.608 55.000 0.00 0.00 0.00 4.02
10 11 0.608035 GTTGGTTGCCCGAAGATCCA 60.608 55.000 0.00 0.00 0.00 3.41
11 12 1.313091 GGTTGGTTGCCCGAAGATCC 61.313 60.000 0.00 0.00 0.00 3.36
12 13 1.313091 GGGTTGGTTGCCCGAAGATC 61.313 60.000 0.00 0.00 36.30 2.75
13 14 1.304134 GGGTTGGTTGCCCGAAGAT 60.304 57.895 0.00 0.00 36.30 2.40
14 15 2.114411 GGGTTGGTTGCCCGAAGA 59.886 61.111 0.00 0.00 36.30 2.87
21 22 3.281359 GATGTGCCGGGTTGGTTGC 62.281 63.158 2.18 0.00 41.21 4.17
22 23 2.635443 GGATGTGCCGGGTTGGTTG 61.635 63.158 2.18 0.00 41.21 3.77
23 24 2.282887 GGATGTGCCGGGTTGGTT 60.283 61.111 2.18 0.00 41.21 3.67
24 25 2.439553 ATTGGATGTGCCGGGTTGGT 62.440 55.000 2.18 0.00 41.21 3.67
25 26 1.257055 AATTGGATGTGCCGGGTTGG 61.257 55.000 2.18 0.00 40.66 3.77
26 27 0.173255 GAATTGGATGTGCCGGGTTG 59.827 55.000 2.18 0.00 40.66 3.77
27 28 0.970427 GGAATTGGATGTGCCGGGTT 60.970 55.000 2.18 0.00 40.66 4.11
28 29 1.379843 GGAATTGGATGTGCCGGGT 60.380 57.895 2.18 0.00 40.66 5.28
29 30 2.480610 CGGAATTGGATGTGCCGGG 61.481 63.158 2.18 0.00 40.66 5.73
30 31 0.819259 ATCGGAATTGGATGTGCCGG 60.819 55.000 0.00 0.00 42.10 6.13
31 32 0.588252 GATCGGAATTGGATGTGCCG 59.412 55.000 0.00 0.00 43.11 5.69
32 33 1.679139 TGATCGGAATTGGATGTGCC 58.321 50.000 0.00 0.00 37.10 5.01
33 34 2.423185 TGTTGATCGGAATTGGATGTGC 59.577 45.455 0.00 0.00 0.00 4.57
34 35 4.156556 AGTTGTTGATCGGAATTGGATGTG 59.843 41.667 0.00 0.00 0.00 3.21
35 36 4.335416 AGTTGTTGATCGGAATTGGATGT 58.665 39.130 0.00 0.00 0.00 3.06
36 37 4.970662 AGTTGTTGATCGGAATTGGATG 57.029 40.909 0.00 0.00 0.00 3.51
37 38 4.158394 CCAAGTTGTTGATCGGAATTGGAT 59.842 41.667 1.45 0.00 38.55 3.41
38 39 3.505680 CCAAGTTGTTGATCGGAATTGGA 59.494 43.478 1.45 0.00 38.55 3.53
39 40 3.505680 TCCAAGTTGTTGATCGGAATTGG 59.494 43.478 1.45 9.14 35.46 3.16
40 41 4.379813 CCTCCAAGTTGTTGATCGGAATTG 60.380 45.833 1.45 0.00 35.46 2.32
41 42 3.758554 CCTCCAAGTTGTTGATCGGAATT 59.241 43.478 1.45 0.00 35.46 2.17
42 43 3.244911 ACCTCCAAGTTGTTGATCGGAAT 60.245 43.478 1.45 0.00 35.46 3.01
43 44 2.105821 ACCTCCAAGTTGTTGATCGGAA 59.894 45.455 1.45 0.00 35.46 4.30
44 45 1.697432 ACCTCCAAGTTGTTGATCGGA 59.303 47.619 1.45 0.00 35.46 4.55
45 46 2.185004 ACCTCCAAGTTGTTGATCGG 57.815 50.000 1.45 0.00 35.46 4.18
46 47 3.623060 CCATACCTCCAAGTTGTTGATCG 59.377 47.826 1.45 0.00 35.46 3.69
47 48 3.378427 GCCATACCTCCAAGTTGTTGATC 59.622 47.826 1.45 0.00 35.46 2.92
48 49 3.010584 AGCCATACCTCCAAGTTGTTGAT 59.989 43.478 1.45 0.00 35.46 2.57
49 50 2.375174 AGCCATACCTCCAAGTTGTTGA 59.625 45.455 1.45 0.00 35.46 3.18
50 51 2.489329 CAGCCATACCTCCAAGTTGTTG 59.511 50.000 1.45 0.00 0.00 3.33
51 52 2.375174 TCAGCCATACCTCCAAGTTGTT 59.625 45.455 1.45 0.00 0.00 2.83
52 53 1.985159 TCAGCCATACCTCCAAGTTGT 59.015 47.619 1.45 0.00 0.00 3.32
53 54 2.026822 ACTCAGCCATACCTCCAAGTTG 60.027 50.000 0.00 0.00 0.00 3.16
54 55 2.026822 CACTCAGCCATACCTCCAAGTT 60.027 50.000 0.00 0.00 0.00 2.66
55 56 1.556911 CACTCAGCCATACCTCCAAGT 59.443 52.381 0.00 0.00 0.00 3.16
56 57 1.134280 CCACTCAGCCATACCTCCAAG 60.134 57.143 0.00 0.00 0.00 3.61
57 58 0.911769 CCACTCAGCCATACCTCCAA 59.088 55.000 0.00 0.00 0.00 3.53
58 59 1.626356 GCCACTCAGCCATACCTCCA 61.626 60.000 0.00 0.00 0.00 3.86
59 60 1.147153 GCCACTCAGCCATACCTCC 59.853 63.158 0.00 0.00 0.00 4.30
60 61 0.543749 AAGCCACTCAGCCATACCTC 59.456 55.000 0.00 0.00 0.00 3.85
61 62 1.879575 TAAGCCACTCAGCCATACCT 58.120 50.000 0.00 0.00 0.00 3.08
62 63 2.565841 CTTAAGCCACTCAGCCATACC 58.434 52.381 0.00 0.00 0.00 2.73
63 64 2.092914 ACCTTAAGCCACTCAGCCATAC 60.093 50.000 0.00 0.00 0.00 2.39
64 65 2.196595 ACCTTAAGCCACTCAGCCATA 58.803 47.619 0.00 0.00 0.00 2.74
65 66 0.995024 ACCTTAAGCCACTCAGCCAT 59.005 50.000 0.00 0.00 0.00 4.40
66 67 1.651737 TACCTTAAGCCACTCAGCCA 58.348 50.000 0.00 0.00 0.00 4.75
67 68 2.945668 CAATACCTTAAGCCACTCAGCC 59.054 50.000 0.00 0.00 0.00 4.85
68 69 2.945668 CCAATACCTTAAGCCACTCAGC 59.054 50.000 0.00 0.00 0.00 4.26
69 70 4.222124 ACCAATACCTTAAGCCACTCAG 57.778 45.455 0.00 0.00 0.00 3.35
70 71 4.650972 AACCAATACCTTAAGCCACTCA 57.349 40.909 0.00 0.00 0.00 3.41
71 72 4.380550 GCAAACCAATACCTTAAGCCACTC 60.381 45.833 0.00 0.00 0.00 3.51
72 73 3.509967 GCAAACCAATACCTTAAGCCACT 59.490 43.478 0.00 0.00 0.00 4.00
73 74 3.509967 AGCAAACCAATACCTTAAGCCAC 59.490 43.478 0.00 0.00 0.00 5.01
74 75 3.773560 AGCAAACCAATACCTTAAGCCA 58.226 40.909 0.00 0.00 0.00 4.75
75 76 5.907866 TTAGCAAACCAATACCTTAAGCC 57.092 39.130 0.00 0.00 0.00 4.35
76 77 6.691388 CGATTTAGCAAACCAATACCTTAAGC 59.309 38.462 0.00 0.00 0.00 3.09
77 78 7.908601 GTCGATTTAGCAAACCAATACCTTAAG 59.091 37.037 0.00 0.00 0.00 1.85
78 79 7.390996 TGTCGATTTAGCAAACCAATACCTTAA 59.609 33.333 0.00 0.00 0.00 1.85
79 80 6.879993 TGTCGATTTAGCAAACCAATACCTTA 59.120 34.615 0.00 0.00 0.00 2.69
80 81 5.708230 TGTCGATTTAGCAAACCAATACCTT 59.292 36.000 0.00 0.00 0.00 3.50
81 82 5.250200 TGTCGATTTAGCAAACCAATACCT 58.750 37.500 0.00 0.00 0.00 3.08
82 83 5.554822 TGTCGATTTAGCAAACCAATACC 57.445 39.130 0.00 0.00 0.00 2.73
83 84 7.690228 TGTATGTCGATTTAGCAAACCAATAC 58.310 34.615 0.00 0.00 0.00 1.89
84 85 7.851387 TGTATGTCGATTTAGCAAACCAATA 57.149 32.000 0.00 0.00 0.00 1.90
85 86 6.751514 TGTATGTCGATTTAGCAAACCAAT 57.248 33.333 0.00 0.00 0.00 3.16
86 87 6.428465 TCTTGTATGTCGATTTAGCAAACCAA 59.572 34.615 0.00 0.00 0.00 3.67
87 88 5.935206 TCTTGTATGTCGATTTAGCAAACCA 59.065 36.000 0.00 0.00 0.00 3.67
88 89 6.417191 TCTTGTATGTCGATTTAGCAAACC 57.583 37.500 0.00 0.00 0.00 3.27
89 90 7.739295 TCTTCTTGTATGTCGATTTAGCAAAC 58.261 34.615 0.00 0.00 0.00 2.93
90 91 7.899178 TCTTCTTGTATGTCGATTTAGCAAA 57.101 32.000 0.00 0.00 0.00 3.68
91 92 8.390354 CAATCTTCTTGTATGTCGATTTAGCAA 58.610 33.333 0.00 0.00 0.00 3.91
92 93 7.549134 ACAATCTTCTTGTATGTCGATTTAGCA 59.451 33.333 0.00 0.00 0.00 3.49
93 94 7.910304 ACAATCTTCTTGTATGTCGATTTAGC 58.090 34.615 0.00 0.00 0.00 3.09
96 97 9.599866 TGATACAATCTTCTTGTATGTCGATTT 57.400 29.630 13.67 0.00 43.39 2.17
97 98 9.770097 ATGATACAATCTTCTTGTATGTCGATT 57.230 29.630 13.67 0.00 43.39 3.34
98 99 9.201127 CATGATACAATCTTCTTGTATGTCGAT 57.799 33.333 13.67 1.18 43.39 3.59
99 100 7.653311 CCATGATACAATCTTCTTGTATGTCGA 59.347 37.037 13.67 0.00 43.39 4.20
100 101 7.095481 CCCATGATACAATCTTCTTGTATGTCG 60.095 40.741 13.67 3.89 43.39 4.35
101 102 7.716998 ACCCATGATACAATCTTCTTGTATGTC 59.283 37.037 13.67 4.26 43.39 3.06
102 103 7.577303 ACCCATGATACAATCTTCTTGTATGT 58.423 34.615 13.67 4.48 43.39 2.29
103 104 8.455903 AACCCATGATACAATCTTCTTGTATG 57.544 34.615 13.67 4.47 43.39 2.39
104 105 7.442364 CGAACCCATGATACAATCTTCTTGTAT 59.558 37.037 9.68 9.68 45.30 2.29
105 106 6.761242 CGAACCCATGATACAATCTTCTTGTA 59.239 38.462 0.00 0.74 38.99 2.41
106 107 5.586243 CGAACCCATGATACAATCTTCTTGT 59.414 40.000 0.00 0.00 36.49 3.16
107 108 5.817296 TCGAACCCATGATACAATCTTCTTG 59.183 40.000 0.00 0.00 0.00 3.02
108 109 5.989477 TCGAACCCATGATACAATCTTCTT 58.011 37.500 0.00 0.00 0.00 2.52
109 110 5.614324 TCGAACCCATGATACAATCTTCT 57.386 39.130 0.00 0.00 0.00 2.85
110 111 6.073003 GGATTCGAACCCATGATACAATCTTC 60.073 42.308 2.75 0.00 0.00 2.87
111 112 5.765182 GGATTCGAACCCATGATACAATCTT 59.235 40.000 2.75 0.00 0.00 2.40
112 113 5.308825 GGATTCGAACCCATGATACAATCT 58.691 41.667 2.75 0.00 0.00 2.40
113 114 4.455877 GGGATTCGAACCCATGATACAATC 59.544 45.833 23.09 4.87 46.05 2.67
114 115 4.398319 GGGATTCGAACCCATGATACAAT 58.602 43.478 23.09 0.00 46.05 2.71
115 116 3.815809 GGGATTCGAACCCATGATACAA 58.184 45.455 23.09 0.00 46.05 2.41
116 117 3.485463 GGGATTCGAACCCATGATACA 57.515 47.619 23.09 0.00 46.05 2.29
124 125 2.092375 AGAGGAAATGGGATTCGAACCC 60.092 50.000 21.92 21.92 46.87 4.11
125 126 2.945668 CAGAGGAAATGGGATTCGAACC 59.054 50.000 0.00 4.00 0.00 3.62
126 127 2.945668 CCAGAGGAAATGGGATTCGAAC 59.054 50.000 0.00 0.00 33.94 3.95
127 128 2.683742 GCCAGAGGAAATGGGATTCGAA 60.684 50.000 0.00 0.00 38.33 3.71
128 129 1.134098 GCCAGAGGAAATGGGATTCGA 60.134 52.381 0.00 0.00 38.33 3.71
129 130 1.312815 GCCAGAGGAAATGGGATTCG 58.687 55.000 0.00 0.00 38.33 3.34
130 131 2.027385 GTGCCAGAGGAAATGGGATTC 58.973 52.381 0.00 0.00 40.55 2.52
131 132 1.358787 TGTGCCAGAGGAAATGGGATT 59.641 47.619 0.00 0.00 40.55 3.01
132 133 1.002069 TGTGCCAGAGGAAATGGGAT 58.998 50.000 0.00 0.00 40.55 3.85
133 134 0.329261 CTGTGCCAGAGGAAATGGGA 59.671 55.000 0.00 0.00 38.33 4.37
134 135 0.329261 TCTGTGCCAGAGGAAATGGG 59.671 55.000 1.25 0.00 35.39 4.00
135 136 2.089980 CTTCTGTGCCAGAGGAAATGG 58.910 52.381 8.11 0.00 41.75 3.16
136 137 2.787994 ACTTCTGTGCCAGAGGAAATG 58.212 47.619 17.22 4.63 41.75 2.32
137 138 3.840666 TCTACTTCTGTGCCAGAGGAAAT 59.159 43.478 17.22 2.68 41.75 2.17
138 139 3.239449 TCTACTTCTGTGCCAGAGGAAA 58.761 45.455 17.22 7.30 41.75 3.13
139 140 2.889512 TCTACTTCTGTGCCAGAGGAA 58.110 47.619 17.22 4.14 41.75 3.36
140 141 2.563179 GTTCTACTTCTGTGCCAGAGGA 59.437 50.000 17.22 7.68 41.75 3.71
141 142 2.672478 CGTTCTACTTCTGTGCCAGAGG 60.672 54.545 11.16 11.16 41.75 3.69
142 143 2.600731 CGTTCTACTTCTGTGCCAGAG 58.399 52.381 5.26 0.00 41.75 3.35
143 144 1.272490 CCGTTCTACTTCTGTGCCAGA 59.728 52.381 1.25 1.25 38.87 3.86
144 145 1.673033 CCCGTTCTACTTCTGTGCCAG 60.673 57.143 0.00 0.00 0.00 4.85
145 146 0.320374 CCCGTTCTACTTCTGTGCCA 59.680 55.000 0.00 0.00 0.00 4.92
146 147 1.019805 GCCCGTTCTACTTCTGTGCC 61.020 60.000 0.00 0.00 0.00 5.01
147 148 1.352156 CGCCCGTTCTACTTCTGTGC 61.352 60.000 0.00 0.00 0.00 4.57
148 149 0.736325 CCGCCCGTTCTACTTCTGTG 60.736 60.000 0.00 0.00 0.00 3.66
149 150 1.590147 CCGCCCGTTCTACTTCTGT 59.410 57.895 0.00 0.00 0.00 3.41
150 151 1.153628 CCCGCCCGTTCTACTTCTG 60.154 63.158 0.00 0.00 0.00 3.02
151 152 3.015312 GCCCGCCCGTTCTACTTCT 62.015 63.158 0.00 0.00 0.00 2.85
152 153 2.510918 GCCCGCCCGTTCTACTTC 60.511 66.667 0.00 0.00 0.00 3.01
153 154 4.446413 CGCCCGCCCGTTCTACTT 62.446 66.667 0.00 0.00 0.00 2.24
155 156 3.938019 TTTCGCCCGCCCGTTCTAC 62.938 63.158 0.00 0.00 0.00 2.59
156 157 2.524951 AATTTCGCCCGCCCGTTCTA 62.525 55.000 0.00 0.00 0.00 2.10
157 158 2.524951 TAATTTCGCCCGCCCGTTCT 62.525 55.000 0.00 0.00 0.00 3.01
158 159 2.107903 TAATTTCGCCCGCCCGTTC 61.108 57.895 0.00 0.00 0.00 3.95
159 160 2.046120 TAATTTCGCCCGCCCGTT 60.046 55.556 0.00 0.00 0.00 4.44
160 161 2.820922 GTAATTTCGCCCGCCCGT 60.821 61.111 0.00 0.00 0.00 5.28
161 162 3.932313 CGTAATTTCGCCCGCCCG 61.932 66.667 0.00 0.00 0.00 6.13
162 163 2.820922 ACGTAATTTCGCCCGCCC 60.821 61.111 4.22 0.00 0.00 6.13
163 164 2.032185 CTCACGTAATTTCGCCCGCC 62.032 60.000 4.22 0.00 0.00 6.13
164 165 1.079875 TCTCACGTAATTTCGCCCGC 61.080 55.000 4.22 0.00 0.00 6.13
165 166 0.921347 CTCTCACGTAATTTCGCCCG 59.079 55.000 4.22 0.00 0.00 6.13
166 167 2.288961 TCTCTCACGTAATTTCGCCC 57.711 50.000 4.22 0.00 0.00 6.13
167 168 3.924686 TCTTTCTCTCACGTAATTTCGCC 59.075 43.478 4.22 0.00 0.00 5.54
168 169 5.306590 GTTCTTTCTCTCACGTAATTTCGC 58.693 41.667 4.22 0.00 0.00 4.70
169 170 5.634020 AGGTTCTTTCTCTCACGTAATTTCG 59.366 40.000 2.65 2.65 0.00 3.46
170 171 6.645415 TGAGGTTCTTTCTCTCACGTAATTTC 59.355 38.462 0.00 0.00 33.21 2.17
171 172 6.522054 TGAGGTTCTTTCTCTCACGTAATTT 58.478 36.000 0.00 0.00 33.21 1.82
172 173 6.097915 TGAGGTTCTTTCTCTCACGTAATT 57.902 37.500 0.00 0.00 33.21 1.40
173 174 5.723672 TGAGGTTCTTTCTCTCACGTAAT 57.276 39.130 0.00 0.00 33.21 1.89
174 175 5.524971 TTGAGGTTCTTTCTCTCACGTAA 57.475 39.130 0.00 0.00 37.28 3.18
175 176 5.524971 TTTGAGGTTCTTTCTCTCACGTA 57.475 39.130 0.00 0.00 37.28 3.57
176 177 4.402056 TTTGAGGTTCTTTCTCTCACGT 57.598 40.909 0.00 0.00 37.28 4.49
177 178 5.466728 TCAATTTGAGGTTCTTTCTCTCACG 59.533 40.000 0.00 0.00 37.28 4.35
178 179 6.867662 TCAATTTGAGGTTCTTTCTCTCAC 57.132 37.500 0.00 0.00 37.28 3.51
179 180 6.432162 CCATCAATTTGAGGTTCTTTCTCTCA 59.568 38.462 9.91 0.00 35.95 3.27
180 181 6.656693 TCCATCAATTTGAGGTTCTTTCTCTC 59.343 38.462 9.91 0.00 32.78 3.20
181 182 6.546484 TCCATCAATTTGAGGTTCTTTCTCT 58.454 36.000 9.91 0.00 32.78 3.10
182 183 6.432472 ACTCCATCAATTTGAGGTTCTTTCTC 59.568 38.462 9.91 0.00 0.00 2.87
183 184 6.310149 ACTCCATCAATTTGAGGTTCTTTCT 58.690 36.000 9.91 0.00 0.00 2.52
184 185 6.349694 GGACTCCATCAATTTGAGGTTCTTTC 60.350 42.308 9.91 0.28 0.00 2.62
185 186 5.478332 GGACTCCATCAATTTGAGGTTCTTT 59.522 40.000 9.91 0.00 0.00 2.52
186 187 5.012893 GGACTCCATCAATTTGAGGTTCTT 58.987 41.667 9.91 0.00 0.00 2.52
187 188 4.593956 GGACTCCATCAATTTGAGGTTCT 58.406 43.478 9.91 0.00 0.00 3.01
188 189 3.375299 CGGACTCCATCAATTTGAGGTTC 59.625 47.826 9.91 9.19 0.00 3.62
189 190 3.347216 CGGACTCCATCAATTTGAGGTT 58.653 45.455 9.91 2.36 0.00 3.50
190 191 2.941415 GCGGACTCCATCAATTTGAGGT 60.941 50.000 9.91 4.14 0.00 3.85
191 192 1.672881 GCGGACTCCATCAATTTGAGG 59.327 52.381 5.21 4.64 0.00 3.86
192 193 1.672881 GGCGGACTCCATCAATTTGAG 59.327 52.381 5.21 0.00 0.00 3.02
193 194 1.750193 GGCGGACTCCATCAATTTGA 58.250 50.000 0.75 0.75 0.00 2.69
194 195 0.378257 CGGCGGACTCCATCAATTTG 59.622 55.000 0.00 0.00 0.00 2.32
195 196 0.035439 ACGGCGGACTCCATCAATTT 60.035 50.000 13.24 0.00 0.00 1.82
196 197 0.462047 GACGGCGGACTCCATCAATT 60.462 55.000 13.24 0.00 0.00 2.32
197 198 1.144057 GACGGCGGACTCCATCAAT 59.856 57.895 13.24 0.00 0.00 2.57
198 199 2.577059 GACGGCGGACTCCATCAA 59.423 61.111 13.24 0.00 0.00 2.57
199 200 3.822192 CGACGGCGGACTCCATCA 61.822 66.667 13.24 0.00 0.00 3.07
209 210 1.944676 GCTATTCTGTCCGACGGCG 60.945 63.158 9.66 1.94 37.24 6.46
210 211 0.872021 CAGCTATTCTGTCCGACGGC 60.872 60.000 9.66 5.12 38.02 5.68
211 212 0.872021 GCAGCTATTCTGTCCGACGG 60.872 60.000 7.84 7.84 44.66 4.79
212 213 0.101399 AGCAGCTATTCTGTCCGACG 59.899 55.000 0.00 0.00 44.66 5.12
213 214 2.301577 AAGCAGCTATTCTGTCCGAC 57.698 50.000 0.00 0.00 44.66 4.79
214 215 3.024547 ACTAAGCAGCTATTCTGTCCGA 58.975 45.455 0.00 0.00 44.66 4.55
215 216 3.119291 CACTAAGCAGCTATTCTGTCCG 58.881 50.000 0.00 0.00 44.66 4.79
216 217 4.116238 GTCACTAAGCAGCTATTCTGTCC 58.884 47.826 0.00 0.00 44.66 4.02
217 218 5.004922 AGTCACTAAGCAGCTATTCTGTC 57.995 43.478 0.00 0.00 44.66 3.51
218 219 5.068460 CCTAGTCACTAAGCAGCTATTCTGT 59.932 44.000 0.00 0.00 44.66 3.41
219 220 5.300539 TCCTAGTCACTAAGCAGCTATTCTG 59.699 44.000 0.00 0.00 45.62 3.02
220 221 5.450453 TCCTAGTCACTAAGCAGCTATTCT 58.550 41.667 0.00 0.00 0.00 2.40
221 222 5.768317 CTCCTAGTCACTAAGCAGCTATTC 58.232 45.833 0.00 0.00 0.00 1.75
222 223 4.038642 GCTCCTAGTCACTAAGCAGCTATT 59.961 45.833 0.00 0.00 33.21 1.73
223 224 3.572255 GCTCCTAGTCACTAAGCAGCTAT 59.428 47.826 0.00 0.00 33.21 2.97
224 225 2.952978 GCTCCTAGTCACTAAGCAGCTA 59.047 50.000 0.00 0.00 33.21 3.32
225 226 1.754226 GCTCCTAGTCACTAAGCAGCT 59.246 52.381 3.93 0.00 33.21 4.24
226 227 1.535015 CGCTCCTAGTCACTAAGCAGC 60.535 57.143 8.85 4.74 33.21 5.25
227 228 1.746220 ACGCTCCTAGTCACTAAGCAG 59.254 52.381 8.85 4.71 33.21 4.24
228 229 1.835494 ACGCTCCTAGTCACTAAGCA 58.165 50.000 8.85 0.00 33.21 3.91
229 230 2.287129 GCTACGCTCCTAGTCACTAAGC 60.287 54.545 0.00 0.00 0.00 3.09
230 231 3.207778 AGCTACGCTCCTAGTCACTAAG 58.792 50.000 0.00 0.00 30.62 2.18
231 232 3.278668 AGCTACGCTCCTAGTCACTAA 57.721 47.619 0.00 0.00 30.62 2.24
233 234 3.886324 AGCTACGCTCCTAGTCACT 57.114 52.632 0.00 0.00 30.62 3.41
243 244 0.250513 CAAGAAAGGGGAGCTACGCT 59.749 55.000 10.31 10.31 43.88 5.07
244 245 0.036294 ACAAGAAAGGGGAGCTACGC 60.036 55.000 4.45 4.45 0.00 4.42
245 246 2.028020 AGAACAAGAAAGGGGAGCTACG 60.028 50.000 0.00 0.00 0.00 3.51
246 247 3.704800 AGAACAAGAAAGGGGAGCTAC 57.295 47.619 0.00 0.00 0.00 3.58
247 248 3.244911 CCAAGAACAAGAAAGGGGAGCTA 60.245 47.826 0.00 0.00 0.00 3.32
248 249 2.489802 CCAAGAACAAGAAAGGGGAGCT 60.490 50.000 0.00 0.00 0.00 4.09
249 250 1.889170 CCAAGAACAAGAAAGGGGAGC 59.111 52.381 0.00 0.00 0.00 4.70
250 251 2.887152 CACCAAGAACAAGAAAGGGGAG 59.113 50.000 0.00 0.00 0.00 4.30
251 252 2.424234 CCACCAAGAACAAGAAAGGGGA 60.424 50.000 0.00 0.00 0.00 4.81
252 253 1.963515 CCACCAAGAACAAGAAAGGGG 59.036 52.381 0.00 0.00 0.00 4.79
253 254 1.341209 GCCACCAAGAACAAGAAAGGG 59.659 52.381 0.00 0.00 0.00 3.95
254 255 1.001378 CGCCACCAAGAACAAGAAAGG 60.001 52.381 0.00 0.00 0.00 3.11
255 256 1.676006 ACGCCACCAAGAACAAGAAAG 59.324 47.619 0.00 0.00 0.00 2.62
256 257 1.673920 GACGCCACCAAGAACAAGAAA 59.326 47.619 0.00 0.00 0.00 2.52
257 258 1.134220 AGACGCCACCAAGAACAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
258 259 0.468226 AGACGCCACCAAGAACAAGA 59.532 50.000 0.00 0.00 0.00 3.02
259 260 2.163818 TAGACGCCACCAAGAACAAG 57.836 50.000 0.00 0.00 0.00 3.16
260 261 2.851263 ATAGACGCCACCAAGAACAA 57.149 45.000 0.00 0.00 0.00 2.83
261 262 2.418197 GCTATAGACGCCACCAAGAACA 60.418 50.000 3.21 0.00 0.00 3.18
262 263 2.202566 GCTATAGACGCCACCAAGAAC 58.797 52.381 3.21 0.00 0.00 3.01
263 264 1.202371 CGCTATAGACGCCACCAAGAA 60.202 52.381 3.21 0.00 0.00 2.52
264 265 0.384309 CGCTATAGACGCCACCAAGA 59.616 55.000 3.21 0.00 0.00 3.02
265 266 0.384309 TCGCTATAGACGCCACCAAG 59.616 55.000 3.21 0.00 0.00 3.61
266 267 0.818938 TTCGCTATAGACGCCACCAA 59.181 50.000 3.21 0.00 0.00 3.67
267 268 0.384309 CTTCGCTATAGACGCCACCA 59.616 55.000 3.21 0.00 0.00 4.17
268 269 0.666913 TCTTCGCTATAGACGCCACC 59.333 55.000 3.21 0.00 0.00 4.61
269 270 2.033049 TCTTCTTCGCTATAGACGCCAC 59.967 50.000 3.21 0.00 0.00 5.01
270 271 2.033049 GTCTTCTTCGCTATAGACGCCA 59.967 50.000 3.21 0.00 0.00 5.69
271 272 2.605097 GGTCTTCTTCGCTATAGACGCC 60.605 54.545 3.21 0.00 38.27 5.68
272 273 2.291190 AGGTCTTCTTCGCTATAGACGC 59.709 50.000 3.21 0.00 38.27 5.19
273 274 4.529446 GAAGGTCTTCTTCGCTATAGACG 58.471 47.826 3.21 7.07 41.95 4.18
284 285 2.224548 CCTTGTTCGGGAAGGTCTTCTT 60.225 50.000 10.13 0.00 39.45 2.52
285 286 1.348036 CCTTGTTCGGGAAGGTCTTCT 59.652 52.381 10.13 0.00 39.45 2.85
286 287 1.809684 CCTTGTTCGGGAAGGTCTTC 58.190 55.000 2.29 2.29 36.05 2.87
296 297 2.629002 CTGGACAACCCTTGTTCGG 58.371 57.895 0.00 0.00 45.52 4.30
297 298 1.226746 GACTGGACAACCCTTGTTCG 58.773 55.000 0.00 0.00 45.52 3.95
298 299 1.605753 GGACTGGACAACCCTTGTTC 58.394 55.000 0.00 0.00 45.52 3.18
299 300 0.185175 GGGACTGGACAACCCTTGTT 59.815 55.000 0.00 0.00 45.52 2.83
301 302 4.821935 GGGACTGGACAACCCTTG 57.178 61.111 0.00 0.00 40.39 3.61
323 324 2.103934 CTCAAGAGCCGAGAGCCG 59.896 66.667 0.00 0.00 45.47 5.52
324 325 1.608717 TTCCTCAAGAGCCGAGAGCC 61.609 60.000 0.00 0.00 45.47 4.70
325 326 0.179113 CTTCCTCAAGAGCCGAGAGC 60.179 60.000 0.00 0.00 44.25 4.09
326 327 0.179113 GCTTCCTCAAGAGCCGAGAG 60.179 60.000 0.00 0.00 31.84 3.20
327 328 0.613292 AGCTTCCTCAAGAGCCGAGA 60.613 55.000 0.00 0.00 31.84 4.04
328 329 0.179113 GAGCTTCCTCAAGAGCCGAG 60.179 60.000 0.00 0.00 38.03 4.63
329 330 1.608717 GGAGCTTCCTCAAGAGCCGA 61.609 60.000 0.00 0.00 39.96 5.54
330 331 1.153469 GGAGCTTCCTCAAGAGCCG 60.153 63.158 0.00 0.00 39.96 5.52
331 332 2.295904 AGGAGCTTCCTCAAGAGCC 58.704 57.895 0.00 0.00 45.66 4.70
340 341 3.672295 CTGCGGTGGAGGAGCTTCC 62.672 68.421 0.00 0.00 37.77 3.46
341 342 2.125350 CTGCGGTGGAGGAGCTTC 60.125 66.667 0.00 0.00 0.00 3.86
342 343 3.710722 CCTGCGGTGGAGGAGCTT 61.711 66.667 0.00 0.00 31.48 3.74
344 345 2.579684 CTAACCTGCGGTGGAGGAGC 62.580 65.000 11.55 0.00 35.34 4.70
345 346 0.970937 TCTAACCTGCGGTGGAGGAG 60.971 60.000 11.55 0.00 35.34 3.69
346 347 0.970937 CTCTAACCTGCGGTGGAGGA 60.971 60.000 11.55 0.00 35.34 3.71
347 348 1.517832 CTCTAACCTGCGGTGGAGG 59.482 63.158 2.52 2.52 35.34 4.30
348 349 1.153549 GCTCTAACCTGCGGTGGAG 60.154 63.158 17.70 17.70 38.47 3.86
349 350 1.476845 TTGCTCTAACCTGCGGTGGA 61.477 55.000 0.94 3.17 35.34 4.02
350 351 0.605319 TTTGCTCTAACCTGCGGTGG 60.605 55.000 0.94 0.00 35.34 4.61
351 352 1.069227 GTTTTGCTCTAACCTGCGGTG 60.069 52.381 0.94 0.00 35.34 4.94
352 353 1.235724 GTTTTGCTCTAACCTGCGGT 58.764 50.000 0.00 0.00 37.65 5.68
353 354 1.234821 TGTTTTGCTCTAACCTGCGG 58.765 50.000 0.00 0.00 0.00 5.69
354 355 2.918131 GCTTGTTTTGCTCTAACCTGCG 60.918 50.000 0.00 0.00 0.00 5.18
357 358 3.243068 CGTTGCTTGTTTTGCTCTAACCT 60.243 43.478 0.00 0.00 0.00 3.50
382 383 1.002366 CTTTCGCGCTAGTTGCTCAT 58.998 50.000 5.56 0.00 40.11 2.90
457 458 3.888930 CCCCTTGCTCTTCACACTAAAAA 59.111 43.478 0.00 0.00 0.00 1.94
466 467 1.252904 GCAATGCCCCTTGCTCTTCA 61.253 55.000 0.00 0.00 46.32 3.02
565 567 3.389329 ACTTTGTTCTCTTGCTCTCCTCA 59.611 43.478 0.00 0.00 0.00 3.86
575 577 4.342092 CACCAAATCCCACTTTGTTCTCTT 59.658 41.667 0.00 0.00 34.90 2.85
591 593 3.257873 TGCAAATTCCGACATCACCAAAT 59.742 39.130 0.00 0.00 0.00 2.32
595 597 1.135402 GGTGCAAATTCCGACATCACC 60.135 52.381 0.00 0.00 36.20 4.02
639 642 7.042051 CGAGTGGAATCAAAGAAACTAGTGAAA 60.042 37.037 0.00 0.00 0.00 2.69
641 644 5.926542 CGAGTGGAATCAAAGAAACTAGTGA 59.073 40.000 0.00 0.00 0.00 3.41
643 646 5.221661 ACCGAGTGGAATCAAAGAAACTAGT 60.222 40.000 0.00 0.00 39.21 2.57
678 681 9.424319 GATAGATCGAACTATTGGAAGCAAATA 57.576 33.333 15.46 0.00 33.85 1.40
699 702 6.235231 AGGCCGACAATTTTTCTAGATAGA 57.765 37.500 0.00 0.00 0.00 1.98
746 749 2.417719 GAAACGACTTCTGGCATCACT 58.582 47.619 0.00 0.00 0.00 3.41
840 845 7.181125 ACAGATCAATCTTGTTAGGAGGTACTT 59.819 37.037 0.00 0.00 34.20 2.24
878 883 5.556006 ATCAATAAAAAGGCCATCATGGG 57.444 39.130 5.62 0.00 38.19 4.00
921 926 0.544833 AGCACCCCATTGCCATTCAA 60.545 50.000 0.00 0.00 44.14 2.69
929 934 1.439353 CGATCCGAAGCACCCCATTG 61.439 60.000 0.00 0.00 0.00 2.82
932 937 3.781307 CCGATCCGAAGCACCCCA 61.781 66.667 0.00 0.00 0.00 4.96
1027 1033 3.062234 CGCCGTTTTTCTTCTCTACCATC 59.938 47.826 0.00 0.00 0.00 3.51
1103 1111 0.248743 TGTTCTCGTCGAAACACGCT 60.249 50.000 14.73 0.00 39.74 5.07
1223 1231 8.466617 TCTGACTAAGACTATAGAATGTTCCC 57.533 38.462 6.78 0.00 0.00 3.97
1315 1323 3.997021 CCCTTTCTATGATCCGGAATTCG 59.003 47.826 9.01 0.00 38.88 3.34
1455 1463 6.426646 AGAATAGCGGAGAGAAATGGTAAT 57.573 37.500 0.00 0.00 0.00 1.89
1585 1593 0.183492 ATTGCCCATACCGACAGCAT 59.817 50.000 0.00 0.00 32.67 3.79
1630 1638 1.078426 CTTTGGTAGCACTCGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
1664 1672 0.954452 GGCAAGGGAAATATCTGGCG 59.046 55.000 0.00 0.00 0.00 5.69
1720 1728 1.610554 GGTTGCTAGGTACCGCTCCA 61.611 60.000 6.18 0.00 0.00 3.86
1749 1757 1.336755 GCAAAGGCAAGACGGAAAAGA 59.663 47.619 0.00 0.00 40.72 2.52
1865 1873 4.313020 AGGAAACAGAGGAAATGCTCAT 57.687 40.909 4.72 0.00 0.00 2.90
1867 1875 3.823304 ACAAGGAAACAGAGGAAATGCTC 59.177 43.478 0.00 0.00 0.00 4.26
1913 1921 3.526931 ATTAGTGGACTGGTCATGTCG 57.473 47.619 3.10 0.00 35.45 4.35
2044 2052 0.535102 CCCGCAACCAAGAGTCACTT 60.535 55.000 0.00 0.00 39.70 3.16
2208 2217 4.142730 GCAAAGAGCTGATTCGATCAAAGT 60.143 41.667 0.00 0.00 39.11 2.66
2232 2241 5.194537 AGAGTGGGATGGGATGAAAGTAAAT 59.805 40.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.