Multiple sequence alignment - TraesCS1B01G162400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G162400 chr1B 100.000 5866 0 0 1 5866 280166780 280172645 0.000000e+00 10833.0
1 TraesCS1B01G162400 chr1B 97.818 275 6 0 1210 1484 37568288 37568562 5.320000e-130 475.0
2 TraesCS1B01G162400 chr1B 97.133 279 7 1 1207 1484 660398847 660398569 2.470000e-128 470.0
3 TraesCS1B01G162400 chr1D 91.635 1865 105 21 2581 4432 199603167 199604993 0.000000e+00 2532.0
4 TraesCS1B01G162400 chr1D 92.500 1360 57 21 4530 5853 199606853 199608203 0.000000e+00 1905.0
5 TraesCS1B01G162400 chr1D 89.400 1217 84 26 1 1194 199599739 199600933 0.000000e+00 1491.0
6 TraesCS1B01G162400 chr1D 87.373 689 46 15 1864 2548 199602455 199603106 0.000000e+00 752.0
7 TraesCS1B01G162400 chr1D 81.979 283 32 12 5591 5863 408612541 408612268 7.650000e-54 222.0
8 TraesCS1B01G162400 chr1D 97.872 94 2 0 4432 4525 199605251 199605344 4.700000e-36 163.0
9 TraesCS1B01G162400 chr1A 96.497 1142 30 8 2580 3715 251344651 251345788 0.000000e+00 1879.0
10 TraesCS1B01G162400 chr1A 89.580 1334 81 22 3712 5016 251345880 251347184 0.000000e+00 1640.0
11 TraesCS1B01G162400 chr1A 90.698 1204 66 17 1 1188 251340966 251342139 0.000000e+00 1561.0
12 TraesCS1B01G162400 chr1A 95.574 723 30 1 1864 2584 251343897 251344619 0.000000e+00 1157.0
13 TraesCS1B01G162400 chr1A 83.244 931 70 30 5005 5854 251347212 251348137 0.000000e+00 776.0
14 TraesCS1B01G162400 chr1A 88.060 201 9 2 1504 1704 251342385 251342570 2.130000e-54 224.0
15 TraesCS1B01G162400 chr1A 100.000 52 0 0 1789 1840 251343777 251343828 4.840000e-16 97.1
16 TraesCS1B01G162400 chr1A 100.000 43 0 0 1738 1780 251342570 251342612 4.870000e-11 80.5
17 TraesCS1B01G162400 chr1A 100.000 28 0 0 1836 1863 251343844 251343871 1.100000e-02 52.8
18 TraesCS1B01G162400 chr2D 85.664 565 62 12 3373 3924 326681202 326680644 1.420000e-160 577.0
19 TraesCS1B01G162400 chr2D 86.697 218 22 5 3970 4182 326680653 326680438 9.830000e-58 235.0
20 TraesCS1B01G162400 chr2D 80.000 220 26 10 5543 5762 62565967 62566168 4.740000e-31 147.0
21 TraesCS1B01G162400 chr5B 96.503 286 10 0 1207 1492 476018215 476018500 1.910000e-129 473.0
22 TraesCS1B01G162400 chr5B 96.466 283 10 0 1208 1490 706452035 706452317 8.900000e-128 468.0
23 TraesCS1B01G162400 chr5B 82.848 309 41 5 5543 5842 278248024 278248329 3.480000e-67 267.0
24 TraesCS1B01G162400 chr7B 97.133 279 8 0 1208 1486 629873221 629872943 6.880000e-129 472.0
25 TraesCS1B01G162400 chr7B 96.809 282 9 0 1206 1487 709760389 709760108 6.880000e-129 472.0
26 TraesCS1B01G162400 chr7B 79.391 558 75 20 3281 3820 453752192 453751657 2.010000e-94 357.0
27 TraesCS1B01G162400 chr6B 97.133 279 8 0 1208 1486 687701717 687701439 6.880000e-129 472.0
28 TraesCS1B01G162400 chr6B 97.133 279 8 0 1208 1486 687720103 687719825 6.880000e-129 472.0
29 TraesCS1B01G162400 chr6B 79.211 558 76 19 3281 3820 560807103 560806568 9.350000e-93 351.0
30 TraesCS1B01G162400 chr6B 78.435 524 72 20 3281 3786 712151397 712151897 2.660000e-78 303.0
31 TraesCS1B01G162400 chr2B 96.809 282 8 1 1204 1484 198449016 198448735 2.470000e-128 470.0
32 TraesCS1B01G162400 chr5D 84.314 459 48 15 3452 3893 483517746 483518197 1.510000e-115 427.0
33 TraesCS1B01G162400 chr4A 78.488 516 88 14 3160 3672 680587444 680586949 3.410000e-82 316.0
34 TraesCS1B01G162400 chr4D 78.295 516 89 12 3160 3672 474014201 474013706 1.590000e-80 311.0
35 TraesCS1B01G162400 chr4B 78.101 516 90 14 3160 3672 597033965 597033470 7.390000e-79 305.0
36 TraesCS1B01G162400 chr4B 85.520 221 28 4 5543 5762 652249119 652249336 1.640000e-55 228.0
37 TraesCS1B01G162400 chr7A 80.420 286 27 15 5513 5798 229009249 229009505 2.160000e-44 191.0
38 TraesCS1B01G162400 chr7A 93.878 98 6 0 5543 5640 721594893 721594990 1.320000e-31 148.0
39 TraesCS1B01G162400 chr6D 92.000 100 6 2 5543 5641 248516064 248515966 7.930000e-29 139.0
40 TraesCS1B01G162400 chr3D 89.320 103 11 0 5543 5645 431719998 431719896 4.770000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G162400 chr1B 280166780 280172645 5865 False 10833.000000 10833 100.000000 1 5866 1 chr1B.!!$F2 5865
1 TraesCS1B01G162400 chr1D 199599739 199608203 8464 False 1368.600000 2532 91.756000 1 5853 5 chr1D.!!$F1 5852
2 TraesCS1B01G162400 chr1A 251340966 251348137 7171 False 829.711111 1879 93.739222 1 5854 9 chr1A.!!$F1 5853
3 TraesCS1B01G162400 chr2D 326680438 326681202 764 True 406.000000 577 86.180500 3373 4182 2 chr2D.!!$R1 809
4 TraesCS1B01G162400 chr7B 453751657 453752192 535 True 357.000000 357 79.391000 3281 3820 1 chr7B.!!$R1 539
5 TraesCS1B01G162400 chr6B 560806568 560807103 535 True 351.000000 351 79.211000 3281 3820 1 chr6B.!!$R1 539
6 TraesCS1B01G162400 chr6B 712151397 712151897 500 False 303.000000 303 78.435000 3281 3786 1 chr6B.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 951 0.033781 TTTCCGTTTCCGTGTCCGAT 59.966 50.000 0.00 0.0 35.63 4.18 F
1140 1180 0.038526 CCTACGACTTCAGCCACGTT 60.039 55.000 0.00 0.0 39.59 3.99 F
1727 2732 0.112995 ATGACACCCTGCACATTGGT 59.887 50.000 0.00 0.0 0.00 3.67 F
1885 4136 1.494960 GGGCCTTTTCCCATGCATAA 58.505 50.000 0.84 0.0 45.82 1.90 F
2134 4387 2.991250 AGCAACGCTTCATATGGTCTT 58.009 42.857 2.13 0.0 33.89 3.01 F
3768 6183 4.021807 TGTTCTTGTCGCTGTAGGTTATCA 60.022 41.667 0.00 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 4916 1.094785 ATTGCACGCACCCAAGATAC 58.905 50.000 0.00 0.00 0.00 2.24 R
2998 5296 1.454479 CCTCTTGCGCAATGGGGAT 60.454 57.895 25.26 0.00 0.00 3.85 R
3431 5742 3.072184 ACTCAATATGCCATCCTGGTCTC 59.928 47.826 0.00 0.00 40.46 3.36 R
3742 6157 3.740115 ACCTACAGCGACAAGAACAAAT 58.260 40.909 0.00 0.00 0.00 2.32 R
4054 6485 1.003718 GTCCTCAACCACCTTCCGG 60.004 63.158 0.00 0.00 0.00 5.14 R
5182 9448 1.000618 TGTAATTACACGCACCGGTGA 59.999 47.619 38.30 16.69 40.38 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 197 7.826690 TGATCTTGTCCTATTTTAAACAAGCC 58.173 34.615 9.59 5.98 45.16 4.35
207 208 4.742438 TTAAACAAGCCGAGTCATGTTC 57.258 40.909 0.00 0.00 35.09 3.18
219 220 2.159043 AGTCATGTTCCTGATGCCGTAG 60.159 50.000 0.00 0.00 0.00 3.51
335 336 3.768215 AGGTACTTACTGGCTACAACCTC 59.232 47.826 0.00 0.00 27.25 3.85
336 337 3.118847 GGTACTTACTGGCTACAACCTCC 60.119 52.174 0.00 0.00 0.00 4.30
338 339 3.248888 ACTTACTGGCTACAACCTCCTT 58.751 45.455 0.00 0.00 0.00 3.36
341 342 2.339769 ACTGGCTACAACCTCCTTCTT 58.660 47.619 0.00 0.00 0.00 2.52
342 343 2.711547 ACTGGCTACAACCTCCTTCTTT 59.288 45.455 0.00 0.00 0.00 2.52
344 345 4.145052 CTGGCTACAACCTCCTTCTTTTT 58.855 43.478 0.00 0.00 0.00 1.94
345 346 4.142038 TGGCTACAACCTCCTTCTTTTTC 58.858 43.478 0.00 0.00 0.00 2.29
347 348 4.827835 GGCTACAACCTCCTTCTTTTTCTT 59.172 41.667 0.00 0.00 0.00 2.52
350 351 5.836821 ACAACCTCCTTCTTTTTCTTGTC 57.163 39.130 0.00 0.00 0.00 3.18
351 352 4.335594 ACAACCTCCTTCTTTTTCTTGTCG 59.664 41.667 0.00 0.00 0.00 4.35
352 353 4.417426 ACCTCCTTCTTTTTCTTGTCGA 57.583 40.909 0.00 0.00 0.00 4.20
353 354 4.127907 ACCTCCTTCTTTTTCTTGTCGAC 58.872 43.478 9.11 9.11 0.00 4.20
354 355 3.184581 CCTCCTTCTTTTTCTTGTCGACG 59.815 47.826 11.62 0.00 0.00 5.12
355 356 4.049186 CTCCTTCTTTTTCTTGTCGACGA 58.951 43.478 11.62 8.40 0.00 4.20
356 357 4.435425 TCCTTCTTTTTCTTGTCGACGAA 58.565 39.130 11.62 6.43 0.00 3.85
357 358 4.269363 TCCTTCTTTTTCTTGTCGACGAAC 59.731 41.667 11.62 0.00 0.00 3.95
358 359 4.033587 CCTTCTTTTTCTTGTCGACGAACA 59.966 41.667 11.62 0.00 0.00 3.18
359 360 5.446741 CCTTCTTTTTCTTGTCGACGAACAA 60.447 40.000 11.62 7.68 37.56 2.83
365 366 2.804697 TTGTCGACGAACAAGGATCA 57.195 45.000 11.62 0.00 34.31 2.92
366 367 2.347697 TGTCGACGAACAAGGATCAG 57.652 50.000 11.62 0.00 0.00 2.90
369 370 2.854777 GTCGACGAACAAGGATCAGATG 59.145 50.000 0.00 0.00 0.00 2.90
373 374 4.862574 CGACGAACAAGGATCAGATGTTAA 59.137 41.667 9.21 0.00 37.41 2.01
420 421 3.119280 AGCACTAACGTTTTGCCTTGTTT 60.119 39.130 23.59 7.97 36.91 2.83
422 423 4.491763 GCACTAACGTTTTGCCTTGTTTTG 60.492 41.667 18.99 2.82 0.00 2.44
477 478 0.179045 CCATCATCGTGGAGGTTCCC 60.179 60.000 0.00 0.00 42.02 3.97
585 586 7.888514 ACTGGAACATATTGATTAGGGGATA 57.111 36.000 0.00 0.00 38.20 2.59
595 596 9.912461 ATATTGATTAGGGGATATTTTTGGGTT 57.088 29.630 0.00 0.00 0.00 4.11
718 721 2.128035 CGTCGAGAGCTGAAACACTTT 58.872 47.619 0.00 0.00 0.00 2.66
719 722 2.540101 CGTCGAGAGCTGAAACACTTTT 59.460 45.455 0.00 0.00 0.00 2.27
749 752 4.019860 ACTGATTAGTGACACCTGCTGAAT 60.020 41.667 0.84 0.00 35.34 2.57
764 767 3.118920 TGCTGAATGCCAATTGATGAAGG 60.119 43.478 7.12 0.00 42.00 3.46
772 775 1.067706 CAATTGATGAAGGGTTGCGCA 60.068 47.619 5.66 5.66 0.00 6.09
781 784 1.039856 AGGGTTGCGCATTTTGAAGT 58.960 45.000 12.75 0.00 0.00 3.01
789 792 4.891516 TGCGCATTTTGAAGTTGTTTTTC 58.108 34.783 5.66 0.00 0.00 2.29
790 793 4.389992 TGCGCATTTTGAAGTTGTTTTTCA 59.610 33.333 5.66 0.00 33.00 2.69
791 794 5.106948 TGCGCATTTTGAAGTTGTTTTTCAA 60.107 32.000 5.66 0.00 41.40 2.69
792 795 5.964751 GCGCATTTTGAAGTTGTTTTTCAAT 59.035 32.000 0.30 0.00 42.31 2.57
793 796 6.468637 GCGCATTTTGAAGTTGTTTTTCAATT 59.531 30.769 0.30 0.00 42.31 2.32
794 797 7.304792 GCGCATTTTGAAGTTGTTTTTCAATTC 60.305 33.333 0.30 0.00 42.31 2.17
795 798 7.691463 CGCATTTTGAAGTTGTTTTTCAATTCA 59.309 29.630 1.75 0.00 42.31 2.57
862 872 9.469807 TCTGCACGTTTCATTGTAAAATAATTT 57.530 25.926 0.00 0.00 0.00 1.82
934 950 0.875474 GTTTCCGTTTCCGTGTCCGA 60.875 55.000 0.00 0.00 35.63 4.55
935 951 0.033781 TTTCCGTTTCCGTGTCCGAT 59.966 50.000 0.00 0.00 35.63 4.18
937 953 0.452987 TCCGTTTCCGTGTCCGATAG 59.547 55.000 0.00 0.00 35.63 2.08
951 967 1.671850 CCGATAGCGTTTGACAGTGGT 60.672 52.381 0.00 0.00 35.23 4.16
953 969 3.247442 CGATAGCGTTTGACAGTGGTAA 58.753 45.455 0.00 0.00 0.00 2.85
968 984 3.151554 GTGGTAAAATATAAGCCCGGGG 58.848 50.000 25.28 9.31 0.00 5.73
1011 1039 0.982852 ATTGAGAGATGGCGGGGTCA 60.983 55.000 0.00 0.00 0.00 4.02
1139 1179 1.585006 CCTACGACTTCAGCCACGT 59.415 57.895 0.00 0.00 41.66 4.49
1140 1180 0.038526 CCTACGACTTCAGCCACGTT 60.039 55.000 0.00 0.00 39.59 3.99
1141 1181 1.060713 CTACGACTTCAGCCACGTTG 58.939 55.000 0.00 0.00 39.59 4.10
1194 1234 0.251474 TCTACAGGTACGTGTGCCCT 60.251 55.000 27.04 6.21 35.84 5.19
1209 1249 4.595538 CCTGCCGCCCGCGTATTA 62.596 66.667 4.92 0.00 42.08 0.98
1210 1250 3.036084 CTGCCGCCCGCGTATTAG 61.036 66.667 4.92 0.00 42.08 1.73
1213 1253 4.295119 CCGCCCGCGTATTAGGCT 62.295 66.667 18.93 0.00 44.84 4.58
1214 1254 3.036084 CGCCCGCGTATTAGGCTG 61.036 66.667 18.93 10.23 44.84 4.85
1215 1255 2.665185 GCCCGCGTATTAGGCTGG 60.665 66.667 14.99 12.77 43.62 4.85
1217 1257 1.145377 CCCGCGTATTAGGCTGGTT 59.855 57.895 4.92 0.00 30.33 3.67
1218 1258 1.157870 CCCGCGTATTAGGCTGGTTG 61.158 60.000 4.92 0.00 30.33 3.77
1219 1259 0.461339 CCGCGTATTAGGCTGGTTGT 60.461 55.000 4.92 0.00 0.00 3.32
1220 1260 1.202440 CCGCGTATTAGGCTGGTTGTA 60.202 52.381 4.92 0.00 0.00 2.41
1221 1261 2.542597 CGCGTATTAGGCTGGTTGTAA 58.457 47.619 0.00 0.00 0.00 2.41
1222 1262 3.128349 CGCGTATTAGGCTGGTTGTAAT 58.872 45.455 0.00 0.00 0.00 1.89
1223 1263 3.059868 CGCGTATTAGGCTGGTTGTAATG 60.060 47.826 0.00 0.00 0.00 1.90
1224 1264 3.250040 GCGTATTAGGCTGGTTGTAATGG 59.750 47.826 0.00 0.00 0.00 3.16
1225 1265 3.813166 CGTATTAGGCTGGTTGTAATGGG 59.187 47.826 0.00 0.00 0.00 4.00
1226 1266 4.685030 CGTATTAGGCTGGTTGTAATGGGT 60.685 45.833 0.00 0.00 0.00 4.51
1227 1267 5.453621 CGTATTAGGCTGGTTGTAATGGGTA 60.454 44.000 0.00 0.00 0.00 3.69
1228 1268 4.497291 TTAGGCTGGTTGTAATGGGTAG 57.503 45.455 0.00 0.00 0.00 3.18
1229 1269 2.275466 AGGCTGGTTGTAATGGGTAGT 58.725 47.619 0.00 0.00 0.00 2.73
1230 1270 3.456842 AGGCTGGTTGTAATGGGTAGTA 58.543 45.455 0.00 0.00 0.00 1.82
1232 1272 4.102681 AGGCTGGTTGTAATGGGTAGTATC 59.897 45.833 0.00 0.00 0.00 2.24
1233 1273 4.141574 GGCTGGTTGTAATGGGTAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
1234 1274 5.456186 GGCTGGTTGTAATGGGTAGTATCAT 60.456 44.000 0.00 0.00 0.00 2.45
1236 1276 7.221450 GCTGGTTGTAATGGGTAGTATCATAA 58.779 38.462 0.00 0.00 0.00 1.90
1237 1277 7.387948 GCTGGTTGTAATGGGTAGTATCATAAG 59.612 40.741 0.00 0.00 0.00 1.73
1238 1278 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
1240 1280 8.426489 GGTTGTAATGGGTAGTATCATAAGTCA 58.574 37.037 0.00 0.00 0.00 3.41
1243 1283 9.871175 TGTAATGGGTAGTATCATAAGTCAGTA 57.129 33.333 0.00 0.00 0.00 2.74
1246 1286 9.601810 AATGGGTAGTATCATAAGTCAGTATCA 57.398 33.333 0.00 0.00 0.00 2.15
1247 1287 9.775539 ATGGGTAGTATCATAAGTCAGTATCAT 57.224 33.333 0.00 0.00 0.00 2.45
1287 1327 9.712305 GTGTATGATACTACCTTTCTAATGCAT 57.288 33.333 4.03 0.00 0.00 3.96
1299 1339 9.896645 ACCTTTCTAATGCATAGTATCATATGG 57.103 33.333 0.00 0.00 34.35 2.74
1300 1340 9.896645 CCTTTCTAATGCATAGTATCATATGGT 57.103 33.333 0.00 0.00 34.35 3.55
1334 1374 7.959175 AGATGACTTTATTTATTGCCATGCAT 58.041 30.769 0.00 0.00 38.76 3.96
1336 1376 7.110043 TGACTTTATTTATTGCCATGCATGA 57.890 32.000 28.31 8.76 38.76 3.07
1338 1378 6.876155 ACTTTATTTATTGCCATGCATGACA 58.124 32.000 28.31 20.53 38.76 3.58
1339 1379 6.757947 ACTTTATTTATTGCCATGCATGACAC 59.242 34.615 28.31 16.49 38.76 3.67
1340 1380 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
1341 1381 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
1344 1384 2.423446 TGCCATGCATGACACATACT 57.577 45.000 28.31 0.00 31.71 2.12
1346 1386 3.469739 TGCCATGCATGACACATACTAG 58.530 45.455 28.31 8.01 31.71 2.57
1348 1388 3.249320 GCCATGCATGACACATACTAGTG 59.751 47.826 28.31 7.28 44.93 2.74
1349 1389 7.601456 TGCCATGCATGACACATACTAGTGT 62.601 44.000 28.31 0.00 44.07 3.55
1351 1391 9.976056 TGCCATGCATGACACATACTAGTGTAG 62.976 44.444 28.31 5.81 42.57 2.74
1368 1408 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
1369 1409 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
1395 1435 7.473735 TCATGATATGATACTCAACCCTCTC 57.526 40.000 0.00 0.00 33.59 3.20
1398 1438 9.029368 CATGATATGATACTCAACCCTCTCTTA 57.971 37.037 0.00 0.00 0.00 2.10
1399 1439 8.410673 TGATATGATACTCAACCCTCTCTTAC 57.589 38.462 0.00 0.00 0.00 2.34
1403 1443 6.253758 TGATACTCAACCCTCTCTTACTTCA 58.746 40.000 0.00 0.00 0.00 3.02
1405 1445 7.400339 TGATACTCAACCCTCTCTTACTTCATT 59.600 37.037 0.00 0.00 0.00 2.57
1408 1448 7.974504 ACTCAACCCTCTCTTACTTCATTTAA 58.025 34.615 0.00 0.00 0.00 1.52
1411 1451 9.449719 TCAACCCTCTCTTACTTCATTTAATTC 57.550 33.333 0.00 0.00 0.00 2.17
1423 1463 8.579850 ACTTCATTTAATTCTATGCCACTTCA 57.420 30.769 0.00 0.00 0.00 3.02
1425 1465 9.674824 CTTCATTTAATTCTATGCCACTTCATC 57.325 33.333 0.00 0.00 0.00 2.92
1426 1466 8.750515 TCATTTAATTCTATGCCACTTCATCA 57.249 30.769 0.00 0.00 0.00 3.07
1428 1468 9.806203 CATTTAATTCTATGCCACTTCATCAAA 57.194 29.630 0.00 0.00 0.00 2.69
1432 1472 5.885230 TCTATGCCACTTCATCAAAGTTG 57.115 39.130 0.00 0.00 46.26 3.16
1434 1474 2.070262 GCCACTTCATCAAAGTTGCC 57.930 50.000 3.35 0.00 46.26 4.52
1436 1476 2.819608 GCCACTTCATCAAAGTTGCCTA 59.180 45.455 3.35 0.00 46.26 3.93
1437 1477 3.119708 GCCACTTCATCAAAGTTGCCTAG 60.120 47.826 3.35 0.00 46.26 3.02
1438 1478 4.074970 CCACTTCATCAAAGTTGCCTAGT 58.925 43.478 0.00 0.00 46.26 2.57
1439 1479 4.520492 CCACTTCATCAAAGTTGCCTAGTT 59.480 41.667 0.00 0.00 46.26 2.24
1440 1480 5.455392 CACTTCATCAAAGTTGCCTAGTTG 58.545 41.667 0.00 0.00 46.26 3.16
1441 1481 4.520492 ACTTCATCAAAGTTGCCTAGTTGG 59.480 41.667 0.00 0.00 46.26 3.77
1454 1494 3.748083 CCTAGTTGGCATGCATGATACT 58.252 45.455 30.64 26.11 0.00 2.12
1455 1495 4.898320 CCTAGTTGGCATGCATGATACTA 58.102 43.478 30.64 25.87 0.00 1.82
1456 1496 4.934001 CCTAGTTGGCATGCATGATACTAG 59.066 45.833 31.40 31.40 36.03 2.57
1457 1497 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
1458 1498 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
1459 1499 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
1460 1500 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
1461 1501 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
1462 1502 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
1463 1503 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
1464 1504 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
1465 1505 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
1466 1506 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
1467 1507 7.381948 GCATGCATGATACTAGCTATGATACTC 59.618 40.741 30.64 1.38 0.00 2.59
1468 1508 7.340122 TGCATGATACTAGCTATGATACTCC 57.660 40.000 0.00 0.00 0.00 3.85
1469 1509 6.322456 TGCATGATACTAGCTATGATACTCCC 59.678 42.308 0.00 0.00 0.00 4.30
1470 1510 6.322456 GCATGATACTAGCTATGATACTCCCA 59.678 42.308 0.00 0.00 0.00 4.37
1471 1511 7.015098 GCATGATACTAGCTATGATACTCCCAT 59.985 40.741 0.00 0.00 0.00 4.00
1472 1512 8.922237 CATGATACTAGCTATGATACTCCCATT 58.078 37.037 0.00 0.00 0.00 3.16
1474 1514 9.409918 TGATACTAGCTATGATACTCCCATTAC 57.590 37.037 0.00 0.00 0.00 1.89
1475 1515 9.409918 GATACTAGCTATGATACTCCCATTACA 57.590 37.037 0.00 0.00 0.00 2.41
1476 1516 9.769677 ATACTAGCTATGATACTCCCATTACAA 57.230 33.333 0.00 0.00 0.00 2.41
1477 1517 8.671987 ACTAGCTATGATACTCCCATTACAAT 57.328 34.615 0.00 0.00 0.00 2.71
1478 1518 8.754080 ACTAGCTATGATACTCCCATTACAATC 58.246 37.037 0.00 0.00 0.00 2.67
1479 1519 7.559335 AGCTATGATACTCCCATTACAATCA 57.441 36.000 0.00 0.00 0.00 2.57
1480 1520 7.619050 AGCTATGATACTCCCATTACAATCAG 58.381 38.462 0.00 0.00 0.00 2.90
1481 1521 6.314896 GCTATGATACTCCCATTACAATCAGC 59.685 42.308 0.00 0.00 0.00 4.26
1482 1522 4.973168 TGATACTCCCATTACAATCAGCC 58.027 43.478 0.00 0.00 0.00 4.85
1483 1523 4.660303 TGATACTCCCATTACAATCAGCCT 59.340 41.667 0.00 0.00 0.00 4.58
1484 1524 5.132648 TGATACTCCCATTACAATCAGCCTT 59.867 40.000 0.00 0.00 0.00 4.35
1485 1525 6.328934 TGATACTCCCATTACAATCAGCCTTA 59.671 38.462 0.00 0.00 0.00 2.69
1486 1526 4.781934 ACTCCCATTACAATCAGCCTTAC 58.218 43.478 0.00 0.00 0.00 2.34
1487 1527 4.227300 ACTCCCATTACAATCAGCCTTACA 59.773 41.667 0.00 0.00 0.00 2.41
1488 1528 5.103940 ACTCCCATTACAATCAGCCTTACAT 60.104 40.000 0.00 0.00 0.00 2.29
1489 1529 5.376625 TCCCATTACAATCAGCCTTACATC 58.623 41.667 0.00 0.00 0.00 3.06
1490 1530 4.520492 CCCATTACAATCAGCCTTACATCC 59.480 45.833 0.00 0.00 0.00 3.51
1491 1531 5.132502 CCATTACAATCAGCCTTACATCCA 58.867 41.667 0.00 0.00 0.00 3.41
1492 1532 5.009010 CCATTACAATCAGCCTTACATCCAC 59.991 44.000 0.00 0.00 0.00 4.02
1493 1533 5.435686 TTACAATCAGCCTTACATCCACT 57.564 39.130 0.00 0.00 0.00 4.00
1494 1534 3.614092 ACAATCAGCCTTACATCCACTG 58.386 45.455 0.00 0.00 0.00 3.66
1495 1535 3.009473 ACAATCAGCCTTACATCCACTGT 59.991 43.478 0.00 0.00 42.13 3.55
1496 1536 4.012374 CAATCAGCCTTACATCCACTGTT 58.988 43.478 0.00 0.00 39.39 3.16
1497 1537 5.185454 CAATCAGCCTTACATCCACTGTTA 58.815 41.667 0.00 0.00 39.39 2.41
1498 1538 4.901197 TCAGCCTTACATCCACTGTTAA 57.099 40.909 0.00 0.00 39.39 2.01
1499 1539 5.435686 TCAGCCTTACATCCACTGTTAAT 57.564 39.130 0.00 0.00 39.39 1.40
1500 1540 5.815581 TCAGCCTTACATCCACTGTTAATT 58.184 37.500 0.00 0.00 39.39 1.40
1501 1541 6.245408 TCAGCCTTACATCCACTGTTAATTT 58.755 36.000 0.00 0.00 39.39 1.82
1502 1542 7.398829 TCAGCCTTACATCCACTGTTAATTTA 58.601 34.615 0.00 0.00 39.39 1.40
1503 1543 8.052748 TCAGCCTTACATCCACTGTTAATTTAT 58.947 33.333 0.00 0.00 39.39 1.40
1504 1544 8.686334 CAGCCTTACATCCACTGTTAATTTATT 58.314 33.333 0.00 0.00 39.39 1.40
1505 1545 8.686334 AGCCTTACATCCACTGTTAATTTATTG 58.314 33.333 0.00 0.00 39.39 1.90
1552 1592 2.045561 TTCAAGCGGGTTTTCTGTCA 57.954 45.000 0.00 0.00 0.00 3.58
1560 1600 4.399934 AGCGGGTTTTCTGTCAAGTTTTTA 59.600 37.500 0.00 0.00 0.00 1.52
1563 1603 6.074516 GCGGGTTTTCTGTCAAGTTTTTATTC 60.075 38.462 0.00 0.00 0.00 1.75
1564 1604 7.200455 CGGGTTTTCTGTCAAGTTTTTATTCT 58.800 34.615 0.00 0.00 0.00 2.40
1633 2638 2.104963 CCCATACTTCTAACCAGGCTCC 59.895 54.545 0.00 0.00 0.00 4.70
1634 2639 3.041946 CCATACTTCTAACCAGGCTCCT 58.958 50.000 0.00 0.00 0.00 3.69
1640 2645 4.651962 ACTTCTAACCAGGCTCCTCTATTC 59.348 45.833 0.00 0.00 0.00 1.75
1716 2721 7.584122 TTTGATACTAGACTAGATGACACCC 57.416 40.000 16.55 0.00 0.00 4.61
1717 2722 6.517013 TGATACTAGACTAGATGACACCCT 57.483 41.667 16.55 0.00 0.00 4.34
1718 2723 6.299922 TGATACTAGACTAGATGACACCCTG 58.700 44.000 16.55 0.00 0.00 4.45
1719 2724 3.292460 ACTAGACTAGATGACACCCTGC 58.708 50.000 16.55 0.00 0.00 4.85
1720 2725 2.238084 AGACTAGATGACACCCTGCA 57.762 50.000 0.00 0.00 0.00 4.41
1721 2726 1.827969 AGACTAGATGACACCCTGCAC 59.172 52.381 0.00 0.00 0.00 4.57
1722 2727 1.550524 GACTAGATGACACCCTGCACA 59.449 52.381 0.00 0.00 0.00 4.57
1723 2728 2.169352 GACTAGATGACACCCTGCACAT 59.831 50.000 0.00 0.00 0.00 3.21
1724 2729 2.573462 ACTAGATGACACCCTGCACATT 59.427 45.455 0.00 0.00 0.00 2.71
1725 2730 1.830279 AGATGACACCCTGCACATTG 58.170 50.000 0.00 0.00 0.00 2.82
1726 2731 0.813184 GATGACACCCTGCACATTGG 59.187 55.000 0.00 0.00 0.00 3.16
1727 2732 0.112995 ATGACACCCTGCACATTGGT 59.887 50.000 0.00 0.00 0.00 3.67
1786 2824 6.677781 AGTTACACGGACATCAATATTTGG 57.322 37.500 0.00 0.00 0.00 3.28
1787 2825 6.411376 AGTTACACGGACATCAATATTTGGA 58.589 36.000 0.00 0.00 0.00 3.53
1885 4136 1.494960 GGGCCTTTTCCCATGCATAA 58.505 50.000 0.84 0.00 45.82 1.90
1914 4165 7.201670 GCAATGATGAGATAAATGTGTCAGTGA 60.202 37.037 4.39 0.00 33.55 3.41
2079 4330 6.255887 GGTGTTATCTTCGATAGTTGAACCTG 59.744 42.308 0.00 0.00 37.40 4.00
2083 4334 5.263968 TCTTCGATAGTTGAACCTGGATC 57.736 43.478 0.00 0.00 37.40 3.36
2100 4351 5.091261 TGGATCCTTGCTCTAAACTTCTC 57.909 43.478 14.23 0.00 0.00 2.87
2103 4354 5.757808 GGATCCTTGCTCTAAACTTCTCATC 59.242 44.000 3.84 0.00 0.00 2.92
2115 4368 9.302345 TCTAAACTTCTCATCATACGCTTTTAG 57.698 33.333 0.00 0.00 0.00 1.85
2134 4387 2.991250 AGCAACGCTTCATATGGTCTT 58.009 42.857 2.13 0.00 33.89 3.01
2437 4692 5.431765 AGGAATTCCTGTACTGTTATGCAG 58.568 41.667 26.52 0.00 46.55 4.41
2530 4785 7.539712 TCTTCTGTTTATCGTCCATCAAATC 57.460 36.000 0.00 0.00 0.00 2.17
2590 4882 6.643770 GGTTTCAAACTCACGTCTGAACTATA 59.356 38.462 0.00 0.00 0.00 1.31
2853 5151 9.838339 AATAGATTTGATAACCAAGGTACTCAG 57.162 33.333 0.00 0.00 38.49 3.35
2903 5201 5.473504 ACTGTGCAACTACAATAAGGGAAAG 59.526 40.000 0.00 0.00 38.04 2.62
2910 5208 9.923143 GCAACTACAATAAGGGAAAGTAAAAAT 57.077 29.630 0.00 0.00 0.00 1.82
2956 5254 5.909621 ATTTGCTTATCTGTGCTTGTCAT 57.090 34.783 0.00 0.00 0.00 3.06
3038 5336 9.178758 AGAGGGCATAAAATCTAAGTTGTTTAG 57.821 33.333 0.00 0.00 40.16 1.85
3090 5389 7.144722 TGGCTTGACATTAACAACTATCTTG 57.855 36.000 0.00 0.00 0.00 3.02
3091 5390 6.150976 TGGCTTGACATTAACAACTATCTTGG 59.849 38.462 0.00 0.00 0.00 3.61
3293 5592 4.599041 ACTTTGCATTATGGAAGGTGCTA 58.401 39.130 12.77 0.00 36.71 3.49
3367 5669 8.831550 CCTTTAGTCAAGTGCTTAATTATCCTC 58.168 37.037 0.00 0.00 0.00 3.71
3673 5984 6.436027 TCTTCACTATCAGAGATGTAAGGGT 58.564 40.000 0.00 0.00 0.00 4.34
3768 6183 4.021807 TGTTCTTGTCGCTGTAGGTTATCA 60.022 41.667 0.00 0.00 0.00 2.15
3960 6391 6.627395 AAATGTCGTGTTGTAATTCCTTGA 57.373 33.333 0.00 0.00 0.00 3.02
3963 6394 5.120399 TGTCGTGTTGTAATTCCTTGAACT 58.880 37.500 0.00 0.00 0.00 3.01
3968 6399 9.491675 TCGTGTTGTAATTCCTTGAACTAATTA 57.508 29.630 0.00 0.00 0.00 1.40
3997 6428 4.039245 CCCAGACTGTACAAGACTCTGAAA 59.961 45.833 15.91 0.00 33.95 2.69
3999 6430 6.226787 CCAGACTGTACAAGACTCTGAAAAT 58.773 40.000 15.91 0.00 33.95 1.82
4000 6431 7.378966 CCAGACTGTACAAGACTCTGAAAATA 58.621 38.462 15.91 0.00 33.95 1.40
4003 6434 8.301002 AGACTGTACAAGACTCTGAAAATAGTC 58.699 37.037 0.00 0.00 42.02 2.59
4054 6485 2.125512 CCAGTACCAGCAGGCGAC 60.126 66.667 0.00 0.00 39.06 5.19
4117 6548 1.681825 TGTCGAACGATCTTCACACG 58.318 50.000 0.00 0.00 0.00 4.49
4240 6676 2.783135 ACATTGAACTGTGCTACTGGG 58.217 47.619 0.00 0.00 0.00 4.45
4241 6677 2.371841 ACATTGAACTGTGCTACTGGGA 59.628 45.455 0.00 0.00 0.00 4.37
4242 6678 3.181445 ACATTGAACTGTGCTACTGGGAA 60.181 43.478 0.00 0.00 0.00 3.97
4243 6679 3.569194 TTGAACTGTGCTACTGGGAAA 57.431 42.857 0.00 0.00 0.00 3.13
4244 6680 3.126001 TGAACTGTGCTACTGGGAAAG 57.874 47.619 0.00 0.00 0.00 2.62
4245 6681 2.438021 TGAACTGTGCTACTGGGAAAGT 59.562 45.455 0.00 0.00 43.40 2.66
4246 6682 2.550830 ACTGTGCTACTGGGAAAGTG 57.449 50.000 0.00 0.00 40.26 3.16
4247 6683 1.160137 CTGTGCTACTGGGAAAGTGC 58.840 55.000 0.00 0.00 40.26 4.40
4324 6763 1.984990 CAGTGTGTTGTGTTGTGTTGC 59.015 47.619 0.00 0.00 0.00 4.17
4526 8727 3.954258 CCCCTTGGCTGAGGTAAATTTAG 59.046 47.826 0.00 0.00 34.88 1.85
4527 8728 3.381590 CCCTTGGCTGAGGTAAATTTAGC 59.618 47.826 17.69 17.69 34.88 3.09
4528 8729 4.016444 CCTTGGCTGAGGTAAATTTAGCA 58.984 43.478 24.95 11.26 36.15 3.49
4574 8775 5.649782 ATTATTGCCACCACTCTTTTCTG 57.350 39.130 0.00 0.00 0.00 3.02
4691 8893 1.886777 GAAGCGAGCAGGGATGAGC 60.887 63.158 0.00 0.00 0.00 4.26
4900 9108 3.254657 AGTGAGAGAGAAACCTCTGTTCG 59.745 47.826 0.00 0.00 43.11 3.95
4905 9113 2.295349 AGAGAAACCTCTGTTCGCGTAA 59.705 45.455 5.77 0.00 39.43 3.18
4933 9141 0.330604 AAGGACTCTGCATGCCATGT 59.669 50.000 16.68 10.71 0.00 3.21
4934 9142 0.393944 AGGACTCTGCATGCCATGTG 60.394 55.000 16.68 8.85 0.00 3.21
4935 9143 1.432251 GACTCTGCATGCCATGTGC 59.568 57.895 16.68 0.00 42.81 4.57
5017 9266 3.249559 GCTGTTGACAAGAAGAGGAAGTG 59.750 47.826 2.63 0.00 0.00 3.16
5182 9448 1.920835 GAAGGAGGGTCCAGCACCT 60.921 63.158 0.00 0.00 45.95 4.00
5526 9846 6.012658 TCACAATGCTTTGGAGATGTAAAC 57.987 37.500 15.92 0.00 37.15 2.01
5585 9926 6.199393 GGCAACTTCAACGGATGATATAAAC 58.801 40.000 0.00 0.00 38.03 2.01
5588 9929 7.201609 GCAACTTCAACGGATGATATAAACTGA 60.202 37.037 0.00 0.00 38.03 3.41
5722 10063 3.680786 CAGGAGGTGTGCCGACGA 61.681 66.667 0.00 0.00 40.50 4.20
5724 10065 3.681835 GGAGGTGTGCCGACGACT 61.682 66.667 0.00 0.00 40.50 4.18
5777 10138 0.949105 GGCGTGGTTGTGAATCGAGT 60.949 55.000 0.00 0.00 0.00 4.18
5799 10160 1.819632 GAATTGGTCGCAGCGGGAT 60.820 57.895 16.42 1.12 0.00 3.85
5803 10164 4.451150 GGTCGCAGCGGGATGACA 62.451 66.667 16.42 0.00 33.04 3.58
5804 10165 2.434185 GTCGCAGCGGGATGACAA 60.434 61.111 16.42 0.00 0.00 3.18
5806 10167 3.499737 CGCAGCGGGATGACAACC 61.500 66.667 7.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.492669 CGAGGTATTTCAGAAATCAGTACACAT 59.507 37.037 11.87 1.66 32.38 3.21
17 18 4.832248 TGCGAGGTATTTCAGAAATCAGT 58.168 39.130 11.87 0.00 32.38 3.41
85 86 2.022764 AAAGCTTGCCAACAACAACC 57.977 45.000 0.00 0.00 0.00 3.77
120 121 2.478134 GCTGCGTCATATCCAAGATCAC 59.522 50.000 0.00 0.00 0.00 3.06
196 197 1.293924 GGCATCAGGAACATGACTCG 58.706 55.000 0.00 0.00 30.46 4.18
207 208 3.319405 ACAGAGATAACTACGGCATCAGG 59.681 47.826 0.00 0.00 0.00 3.86
335 336 4.033587 TGTTCGTCGACAAGAAAAAGAAGG 59.966 41.667 17.16 0.00 0.00 3.46
336 337 5.138800 TGTTCGTCGACAAGAAAAAGAAG 57.861 39.130 17.16 0.00 0.00 2.85
347 348 1.883926 TCTGATCCTTGTTCGTCGACA 59.116 47.619 17.16 0.00 0.00 4.35
350 351 2.881074 ACATCTGATCCTTGTTCGTCG 58.119 47.619 0.00 0.00 0.00 5.12
351 352 6.910536 ATTAACATCTGATCCTTGTTCGTC 57.089 37.500 7.92 0.00 35.37 4.20
352 353 8.258007 TCTTATTAACATCTGATCCTTGTTCGT 58.742 33.333 7.92 3.14 35.37 3.85
353 354 8.648557 TCTTATTAACATCTGATCCTTGTTCG 57.351 34.615 7.92 0.00 35.37 3.95
355 356 9.739276 TGTTCTTATTAACATCTGATCCTTGTT 57.261 29.630 9.20 9.20 34.50 2.83
356 357 9.739276 TTGTTCTTATTAACATCTGATCCTTGT 57.261 29.630 0.00 0.00 39.04 3.16
373 374 8.523915 TGGTGCTCATCAAATATTGTTCTTAT 57.476 30.769 0.00 0.00 0.00 1.73
420 421 1.134818 AGAGACGACACACTGCAACAA 60.135 47.619 0.00 0.00 0.00 2.83
422 423 0.855349 CAGAGACGACACACTGCAAC 59.145 55.000 0.00 0.00 0.00 4.17
477 478 2.039613 AGGTGCCTCTTTCTCCTCTTTG 59.960 50.000 0.00 0.00 0.00 2.77
718 721 5.421056 AGGTGTCACTAATCAGTTCCGATAA 59.579 40.000 2.35 0.00 30.46 1.75
719 722 4.954202 AGGTGTCACTAATCAGTTCCGATA 59.046 41.667 2.35 0.00 30.46 2.92
749 752 1.275856 GCAACCCTTCATCAATTGGCA 59.724 47.619 5.42 0.00 0.00 4.92
764 767 2.200899 ACAACTTCAAAATGCGCAACC 58.799 42.857 17.11 0.00 0.00 3.77
781 784 8.026607 ACGAGAAGAAAGTGAATTGAAAAACAA 58.973 29.630 0.00 0.00 42.95 2.83
791 794 9.666626 CGTATTATAGACGAGAAGAAAGTGAAT 57.333 33.333 3.79 0.00 42.98 2.57
792 795 8.886719 TCGTATTATAGACGAGAAGAAAGTGAA 58.113 33.333 7.62 0.00 43.99 3.18
793 796 8.429493 TCGTATTATAGACGAGAAGAAAGTGA 57.571 34.615 7.62 0.00 43.99 3.41
862 872 1.000060 CCAACGACCGGACAAAGACTA 60.000 52.381 9.46 0.00 0.00 2.59
934 950 7.859325 ATATTTTACCACTGTCAAACGCTAT 57.141 32.000 0.00 0.00 0.00 2.97
935 951 8.774890 TTATATTTTACCACTGTCAAACGCTA 57.225 30.769 0.00 0.00 0.00 4.26
937 953 6.468000 GCTTATATTTTACCACTGTCAAACGC 59.532 38.462 0.00 0.00 0.00 4.84
968 984 4.168291 CAAGGCGAGGAGGGGAGC 62.168 72.222 0.00 0.00 0.00 4.70
973 1001 1.988293 TATCTCTCAAGGCGAGGAGG 58.012 55.000 0.00 0.00 42.55 4.30
981 1009 5.481105 GCCATCTCTCAATATCTCTCAAGG 58.519 45.833 0.00 0.00 0.00 3.61
990 1018 1.625818 GACCCCGCCATCTCTCAATAT 59.374 52.381 0.00 0.00 0.00 1.28
991 1019 1.048601 GACCCCGCCATCTCTCAATA 58.951 55.000 0.00 0.00 0.00 1.90
1011 1039 2.284478 TCCCTCTGCTGCTGCTCT 60.284 61.111 17.00 0.00 40.48 4.09
1033 1064 1.007734 TCCTCGTGTCGAACAGCAC 60.008 57.895 0.00 0.00 34.74 4.40
1152 1192 1.414897 GTCAAAGGCGACGTAAGCG 59.585 57.895 9.03 0.20 45.62 4.68
1194 1234 4.595538 CCTAATACGCGGGCGGCA 62.596 66.667 18.03 5.06 43.84 5.69
1198 1238 2.665185 CCAGCCTAATACGCGGGC 60.665 66.667 12.47 13.68 45.57 6.13
1201 1241 2.212869 TACAACCAGCCTAATACGCG 57.787 50.000 3.53 3.53 0.00 6.01
1203 1243 3.813166 CCCATTACAACCAGCCTAATACG 59.187 47.826 0.00 0.00 0.00 3.06
1205 1245 5.668535 ACTACCCATTACAACCAGCCTAATA 59.331 40.000 0.00 0.00 0.00 0.98
1206 1246 4.477213 ACTACCCATTACAACCAGCCTAAT 59.523 41.667 0.00 0.00 0.00 1.73
1209 1249 2.275466 ACTACCCATTACAACCAGCCT 58.725 47.619 0.00 0.00 0.00 4.58
1210 1250 2.801077 ACTACCCATTACAACCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
1212 1252 8.429641 ACTTATGATACTACCCATTACAACCAG 58.570 37.037 0.00 0.00 0.00 4.00
1213 1253 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
1214 1254 8.426489 TGACTTATGATACTACCCATTACAACC 58.574 37.037 0.00 0.00 0.00 3.77
1215 1255 9.477484 CTGACTTATGATACTACCCATTACAAC 57.523 37.037 0.00 0.00 0.00 3.32
1217 1257 8.777578 ACTGACTTATGATACTACCCATTACA 57.222 34.615 0.00 0.00 0.00 2.41
1220 1260 9.601810 TGATACTGACTTATGATACTACCCATT 57.398 33.333 0.00 0.00 0.00 3.16
1221 1261 9.775539 ATGATACTGACTTATGATACTACCCAT 57.224 33.333 0.00 0.00 0.00 4.00
1261 1301 9.712305 ATGCATTAGAAAGGTAGTATCATACAC 57.288 33.333 0.00 0.00 0.00 2.90
1273 1313 9.896645 CCATATGATACTATGCATTAGAAAGGT 57.103 33.333 3.54 0.00 0.00 3.50
1274 1314 9.896645 ACCATATGATACTATGCATTAGAAAGG 57.103 33.333 3.54 0.00 0.00 3.11
1306 1346 9.350357 GCATGGCAATAAATAAAGTCATCTATG 57.650 33.333 0.00 0.00 0.00 2.23
1307 1347 9.081204 TGCATGGCAATAAATAAAGTCATCTAT 57.919 29.630 0.00 0.00 34.76 1.98
1309 1349 7.350744 TGCATGGCAATAAATAAAGTCATCT 57.649 32.000 0.00 0.00 34.76 2.90
1310 1350 7.868922 TCATGCATGGCAATAAATAAAGTCATC 59.131 33.333 25.97 0.00 43.62 2.92
1311 1351 7.654520 GTCATGCATGGCAATAAATAAAGTCAT 59.345 33.333 26.04 0.00 43.62 3.06
1313 1353 6.979817 TGTCATGCATGGCAATAAATAAAGTC 59.020 34.615 30.82 0.00 43.62 3.01
1314 1354 6.757947 GTGTCATGCATGGCAATAAATAAAGT 59.242 34.615 34.01 0.00 44.94 2.66
1315 1355 6.757478 TGTGTCATGCATGGCAATAAATAAAG 59.243 34.615 34.01 0.00 44.94 1.85
1316 1356 6.637657 TGTGTCATGCATGGCAATAAATAAA 58.362 32.000 34.01 6.82 44.94 1.40
1317 1357 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
1318 1358 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
1319 1359 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
1320 1360 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
1321 1361 4.888823 AGTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
1322 1362 4.463070 AGTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 26.44 44.94 1.90
1323 1363 3.293337 AGTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
1324 1364 2.725637 AGTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
1327 1367 4.445453 ACACTAGTATGTGTCATGCATGG 58.555 43.478 25.97 8.61 46.90 3.66
1329 1369 5.163416 TGCTACACTAGTATGTGTCATGCAT 60.163 40.000 3.46 0.00 46.90 3.96
1330 1370 4.159506 TGCTACACTAGTATGTGTCATGCA 59.840 41.667 3.46 10.15 46.90 3.96
1331 1371 4.682787 TGCTACACTAGTATGTGTCATGC 58.317 43.478 3.46 8.05 46.90 4.06
1380 1420 6.777213 TGAAGTAAGAGAGGGTTGAGTATC 57.223 41.667 0.00 0.00 0.00 2.24
1381 1421 7.741554 AATGAAGTAAGAGAGGGTTGAGTAT 57.258 36.000 0.00 0.00 0.00 2.12
1383 1423 6.441088 AAATGAAGTAAGAGAGGGTTGAGT 57.559 37.500 0.00 0.00 0.00 3.41
1384 1424 9.454859 AATTAAATGAAGTAAGAGAGGGTTGAG 57.545 33.333 0.00 0.00 0.00 3.02
1394 1434 9.905713 AGTGGCATAGAATTAAATGAAGTAAGA 57.094 29.630 0.00 0.00 0.00 2.10
1398 1438 8.579850 TGAAGTGGCATAGAATTAAATGAAGT 57.420 30.769 0.00 0.00 0.00 3.01
1399 1439 9.674824 GATGAAGTGGCATAGAATTAAATGAAG 57.325 33.333 0.00 0.00 0.00 3.02
1405 1445 8.579850 ACTTTGATGAAGTGGCATAGAATTAA 57.420 30.769 0.00 0.00 46.66 1.40
1434 1474 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
1436 1476 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
1437 1477 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
1438 1478 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
1439 1479 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
1440 1480 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
1441 1481 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
1442 1482 7.866898 GGAGTATCATAGCTAGTATCATGCATG 59.133 40.741 21.07 21.07 36.25 4.06
1443 1483 7.015098 GGGAGTATCATAGCTAGTATCATGCAT 59.985 40.741 0.00 0.00 36.25 3.96
1444 1484 6.322456 GGGAGTATCATAGCTAGTATCATGCA 59.678 42.308 0.00 0.00 36.25 3.96
1445 1485 6.322456 TGGGAGTATCATAGCTAGTATCATGC 59.678 42.308 0.00 0.00 36.25 4.06
1446 1486 7.888250 TGGGAGTATCATAGCTAGTATCATG 57.112 40.000 0.00 0.00 36.25 3.07
1448 1488 9.409918 GTAATGGGAGTATCATAGCTAGTATCA 57.590 37.037 0.00 0.00 36.25 2.15
1449 1489 9.409918 TGTAATGGGAGTATCATAGCTAGTATC 57.590 37.037 0.00 0.00 36.25 2.24
1450 1490 9.769677 TTGTAATGGGAGTATCATAGCTAGTAT 57.230 33.333 0.00 0.00 36.25 2.12
1451 1491 9.769677 ATTGTAATGGGAGTATCATAGCTAGTA 57.230 33.333 0.00 0.00 36.25 1.82
1452 1492 8.671987 ATTGTAATGGGAGTATCATAGCTAGT 57.328 34.615 0.00 0.00 36.25 2.57
1453 1493 8.753133 TGATTGTAATGGGAGTATCATAGCTAG 58.247 37.037 0.00 0.00 36.25 3.42
1454 1494 8.664669 TGATTGTAATGGGAGTATCATAGCTA 57.335 34.615 0.00 0.00 36.25 3.32
1455 1495 7.559335 TGATTGTAATGGGAGTATCATAGCT 57.441 36.000 0.00 0.00 36.25 3.32
1456 1496 6.314896 GCTGATTGTAATGGGAGTATCATAGC 59.685 42.308 0.00 0.00 36.25 2.97
1457 1497 6.820656 GGCTGATTGTAATGGGAGTATCATAG 59.179 42.308 0.00 0.00 36.25 2.23
1458 1498 6.501805 AGGCTGATTGTAATGGGAGTATCATA 59.498 38.462 0.00 0.00 36.25 2.15
1459 1499 5.311649 AGGCTGATTGTAATGGGAGTATCAT 59.688 40.000 0.00 0.00 36.25 2.45
1460 1500 4.660303 AGGCTGATTGTAATGGGAGTATCA 59.340 41.667 0.00 0.00 36.25 2.15
1461 1501 5.234466 AGGCTGATTGTAATGGGAGTATC 57.766 43.478 0.00 0.00 0.00 2.24
1462 1502 5.653255 AAGGCTGATTGTAATGGGAGTAT 57.347 39.130 0.00 0.00 0.00 2.12
1463 1503 5.427157 TGTAAGGCTGATTGTAATGGGAGTA 59.573 40.000 0.00 0.00 0.00 2.59
1464 1504 4.227300 TGTAAGGCTGATTGTAATGGGAGT 59.773 41.667 0.00 0.00 0.00 3.85
1465 1505 4.780815 TGTAAGGCTGATTGTAATGGGAG 58.219 43.478 0.00 0.00 0.00 4.30
1466 1506 4.853468 TGTAAGGCTGATTGTAATGGGA 57.147 40.909 0.00 0.00 0.00 4.37
1467 1507 4.520492 GGATGTAAGGCTGATTGTAATGGG 59.480 45.833 0.00 0.00 0.00 4.00
1468 1508 5.009010 GTGGATGTAAGGCTGATTGTAATGG 59.991 44.000 0.00 0.00 0.00 3.16
1469 1509 5.824624 AGTGGATGTAAGGCTGATTGTAATG 59.175 40.000 0.00 0.00 0.00 1.90
1470 1510 5.824624 CAGTGGATGTAAGGCTGATTGTAAT 59.175 40.000 0.00 0.00 0.00 1.89
1471 1511 5.185454 CAGTGGATGTAAGGCTGATTGTAA 58.815 41.667 0.00 0.00 0.00 2.41
1472 1512 4.225042 ACAGTGGATGTAAGGCTGATTGTA 59.775 41.667 0.00 0.00 41.60 2.41
1473 1513 3.009473 ACAGTGGATGTAAGGCTGATTGT 59.991 43.478 0.00 0.00 41.60 2.71
1474 1514 3.614092 ACAGTGGATGTAAGGCTGATTG 58.386 45.455 0.00 0.00 41.60 2.67
1475 1515 4.307032 AACAGTGGATGTAAGGCTGATT 57.693 40.909 0.00 0.00 43.00 2.57
1476 1516 5.435686 TTAACAGTGGATGTAAGGCTGAT 57.564 39.130 0.00 0.00 43.00 2.90
1477 1517 4.901197 TTAACAGTGGATGTAAGGCTGA 57.099 40.909 0.00 0.00 43.00 4.26
1478 1518 6.515272 AAATTAACAGTGGATGTAAGGCTG 57.485 37.500 0.00 0.00 43.00 4.85
1479 1519 8.686334 CAATAAATTAACAGTGGATGTAAGGCT 58.314 33.333 0.00 0.00 43.00 4.58
1480 1520 8.466798 ACAATAAATTAACAGTGGATGTAAGGC 58.533 33.333 0.00 0.00 43.00 4.35
1484 1524 9.733556 ACAGACAATAAATTAACAGTGGATGTA 57.266 29.630 0.00 0.00 43.00 2.29
1485 1525 8.635765 ACAGACAATAAATTAACAGTGGATGT 57.364 30.769 0.00 0.00 46.97 3.06
1486 1526 9.912634 AAACAGACAATAAATTAACAGTGGATG 57.087 29.630 0.00 0.00 0.00 3.51
1488 1528 8.286800 CGAAACAGACAATAAATTAACAGTGGA 58.713 33.333 0.00 0.00 0.00 4.02
1489 1529 8.073768 ACGAAACAGACAATAAATTAACAGTGG 58.926 33.333 0.00 0.00 0.00 4.00
1490 1530 9.103048 GACGAAACAGACAATAAATTAACAGTG 57.897 33.333 0.00 0.00 0.00 3.66
1491 1531 9.052759 AGACGAAACAGACAATAAATTAACAGT 57.947 29.630 0.00 0.00 0.00 3.55
1492 1532 9.530129 GAGACGAAACAGACAATAAATTAACAG 57.470 33.333 0.00 0.00 0.00 3.16
1493 1533 9.268268 AGAGACGAAACAGACAATAAATTAACA 57.732 29.630 0.00 0.00 0.00 2.41
1497 1537 9.665264 GAAAAGAGACGAAACAGACAATAAATT 57.335 29.630 0.00 0.00 0.00 1.82
1498 1538 9.057089 AGAAAAGAGACGAAACAGACAATAAAT 57.943 29.630 0.00 0.00 0.00 1.40
1499 1539 8.433421 AGAAAAGAGACGAAACAGACAATAAA 57.567 30.769 0.00 0.00 0.00 1.40
1500 1540 8.433421 AAGAAAAGAGACGAAACAGACAATAA 57.567 30.769 0.00 0.00 0.00 1.40
1501 1541 7.709182 TGAAGAAAAGAGACGAAACAGACAATA 59.291 33.333 0.00 0.00 0.00 1.90
1502 1542 6.538742 TGAAGAAAAGAGACGAAACAGACAAT 59.461 34.615 0.00 0.00 0.00 2.71
1503 1543 5.872617 TGAAGAAAAGAGACGAAACAGACAA 59.127 36.000 0.00 0.00 0.00 3.18
1504 1544 5.416083 TGAAGAAAAGAGACGAAACAGACA 58.584 37.500 0.00 0.00 0.00 3.41
1505 1545 5.050702 CCTGAAGAAAAGAGACGAAACAGAC 60.051 44.000 0.00 0.00 0.00 3.51
1633 2638 8.915654 GGTTAAAAATGCAACACAAGAATAGAG 58.084 33.333 0.00 0.00 0.00 2.43
1634 2639 7.870445 GGGTTAAAAATGCAACACAAGAATAGA 59.130 33.333 0.00 0.00 0.00 1.98
1704 2709 2.941064 CAATGTGCAGGGTGTCATCTAG 59.059 50.000 0.00 0.00 0.00 2.43
1705 2710 2.356022 CCAATGTGCAGGGTGTCATCTA 60.356 50.000 0.00 0.00 0.00 1.98
1706 2711 1.615116 CCAATGTGCAGGGTGTCATCT 60.615 52.381 0.00 0.00 0.00 2.90
1707 2712 0.813184 CCAATGTGCAGGGTGTCATC 59.187 55.000 0.00 0.00 0.00 2.92
1708 2713 0.112995 ACCAATGTGCAGGGTGTCAT 59.887 50.000 0.00 0.00 32.60 3.06
1709 2714 0.822944 CACCAATGTGCAGGGTGTCA 60.823 55.000 15.19 0.00 45.48 3.58
1710 2715 1.959085 CACCAATGTGCAGGGTGTC 59.041 57.895 15.19 0.00 45.48 3.67
1711 2716 4.179361 CACCAATGTGCAGGGTGT 57.821 55.556 15.19 0.00 45.48 4.16
1719 2724 5.286797 CACGAATAATTCTTGCACCAATGTG 59.713 40.000 0.00 0.00 45.65 3.21
1720 2725 5.182950 TCACGAATAATTCTTGCACCAATGT 59.817 36.000 0.00 0.00 0.00 2.71
1721 2726 5.639757 TCACGAATAATTCTTGCACCAATG 58.360 37.500 0.00 0.00 0.00 2.82
1722 2727 5.895636 TCACGAATAATTCTTGCACCAAT 57.104 34.783 0.00 0.00 0.00 3.16
1723 2728 5.895636 ATCACGAATAATTCTTGCACCAA 57.104 34.783 0.00 0.00 0.00 3.67
1724 2729 8.846943 ATATATCACGAATAATTCTTGCACCA 57.153 30.769 0.00 0.00 0.00 4.17
1725 2730 9.155975 AGATATATCACGAATAATTCTTGCACC 57.844 33.333 15.08 0.00 0.00 5.01
1727 2732 9.927668 TGAGATATATCACGAATAATTCTTGCA 57.072 29.630 15.08 0.00 0.00 4.08
1785 2823 7.530426 AGGCTTATGTTATCAATCCAAATCC 57.470 36.000 0.00 0.00 0.00 3.01
1885 4136 8.002984 TGACACATTTATCTCATCATTGCAAT 57.997 30.769 5.99 5.99 0.00 3.56
1949 4200 7.107639 ACAAAAGGCATGTACTAAAACAAGT 57.892 32.000 0.00 0.00 32.02 3.16
1958 4209 5.351948 AACCAAAACAAAAGGCATGTACT 57.648 34.783 0.00 0.00 0.00 2.73
2027 4278 8.659491 GCATCTTGTTGAAAAAGAAAGAAAACT 58.341 29.630 1.32 0.00 37.22 2.66
2043 4294 4.651994 GAAGATAACACCGCATCTTGTTG 58.348 43.478 1.76 0.00 40.68 3.33
2079 4330 5.091261 TGAGAAGTTTAGAGCAAGGATCC 57.909 43.478 2.48 2.48 0.00 3.36
2083 4334 6.199908 CGTATGATGAGAAGTTTAGAGCAAGG 59.800 42.308 0.00 0.00 0.00 3.61
2100 4351 3.029074 GCGTTGCTAAAAGCGTATGATG 58.971 45.455 0.00 0.00 46.26 3.07
2103 4354 2.806288 AGCGTTGCTAAAAGCGTATG 57.194 45.000 0.00 0.00 46.26 2.39
2115 4368 3.429085 CAAAGACCATATGAAGCGTTGC 58.571 45.455 3.65 0.00 0.00 4.17
2134 4387 3.517296 TGTACCATTCCCTCAAAGCAA 57.483 42.857 0.00 0.00 0.00 3.91
2394 4649 6.761099 TCCTAGAGAACAAGCTAAGTACAG 57.239 41.667 0.00 0.00 0.00 2.74
2437 4692 5.066505 ACAAAGACATCAGTTTCCACTTGAC 59.933 40.000 0.00 0.00 0.00 3.18
2590 4882 6.888632 ACTTTCAGTAGGATGCATTTCAGAAT 59.111 34.615 0.00 0.00 0.00 2.40
2624 4916 1.094785 ATTGCACGCACCCAAGATAC 58.905 50.000 0.00 0.00 0.00 2.24
2809 5104 9.790344 AAATCTATTATCTGCTTAATGTGCTCT 57.210 29.630 0.00 0.00 0.00 4.09
2956 5254 5.779260 TGAAGGTTTGATTTCATGGAATGGA 59.221 36.000 3.23 0.00 46.73 3.41
2998 5296 1.454479 CCTCTTGCGCAATGGGGAT 60.454 57.895 25.26 0.00 0.00 3.85
3047 5345 8.756927 TCAAGCCAAATGGTATGAATTATGAAA 58.243 29.630 0.71 0.00 37.57 2.69
3090 5389 7.786178 TCTGTCATTTGCATATACAAGTACC 57.214 36.000 0.00 0.00 0.00 3.34
3331 5633 6.040391 AGCACTTGACTAAAGGCAACAATTAA 59.960 34.615 0.00 0.00 40.51 1.40
3333 5635 4.342092 AGCACTTGACTAAAGGCAACAATT 59.658 37.500 0.00 0.00 40.51 2.32
3367 5669 3.567164 AGCAGACTGAACAGAAAATGTGG 59.433 43.478 6.65 0.00 43.00 4.17
3431 5742 3.072184 ACTCAATATGCCATCCTGGTCTC 59.928 47.826 0.00 0.00 40.46 3.36
3742 6157 3.740115 ACCTACAGCGACAAGAACAAAT 58.260 40.909 0.00 0.00 0.00 2.32
3936 6367 7.731882 TCAAGGAATTACAACACGACATTTA 57.268 32.000 0.00 0.00 0.00 1.40
3939 6370 5.763204 AGTTCAAGGAATTACAACACGACAT 59.237 36.000 0.00 0.00 0.00 3.06
3968 6399 6.270231 AGAGTCTTGTACAGTCTGGGTAAAAT 59.730 38.462 4.53 0.00 0.00 1.82
3969 6400 5.601313 AGAGTCTTGTACAGTCTGGGTAAAA 59.399 40.000 4.53 0.00 0.00 1.52
4054 6485 1.003718 GTCCTCAACCACCTTCCGG 60.004 63.158 0.00 0.00 0.00 5.14
4069 6500 2.032924 CAGGAAACTTTCGTGGTTGTCC 59.967 50.000 14.03 2.86 40.76 4.02
4081 6512 3.069586 TCGACATGTGTCTCAGGAAACTT 59.930 43.478 1.15 0.00 42.66 2.66
4240 6676 4.860072 ACTTTCCTTTCATTCGCACTTTC 58.140 39.130 0.00 0.00 0.00 2.62
4241 6677 4.918810 ACTTTCCTTTCATTCGCACTTT 57.081 36.364 0.00 0.00 0.00 2.66
4242 6678 5.531287 AGTTACTTTCCTTTCATTCGCACTT 59.469 36.000 0.00 0.00 0.00 3.16
4243 6679 5.063880 AGTTACTTTCCTTTCATTCGCACT 58.936 37.500 0.00 0.00 0.00 4.40
4244 6680 5.049680 TGAGTTACTTTCCTTTCATTCGCAC 60.050 40.000 0.00 0.00 0.00 5.34
4245 6681 5.060506 TGAGTTACTTTCCTTTCATTCGCA 58.939 37.500 0.00 0.00 0.00 5.10
4246 6682 5.607119 TGAGTTACTTTCCTTTCATTCGC 57.393 39.130 0.00 0.00 0.00 4.70
4247 6683 7.331934 TCAGATGAGTTACTTTCCTTTCATTCG 59.668 37.037 0.00 0.00 0.00 3.34
4293 6729 3.748048 CACAACACACTGTTAGATGAGGG 59.252 47.826 0.00 0.00 38.77 4.30
4294 6730 4.380531 ACACAACACACTGTTAGATGAGG 58.619 43.478 0.00 0.00 38.77 3.86
4302 6738 3.637432 CAACACAACACAACACACTGTT 58.363 40.909 0.00 0.00 42.08 3.16
4324 6763 3.314553 CAGTTTCTGCTGCAATTTCTGG 58.685 45.455 3.02 0.00 0.00 3.86
4504 7201 2.532250 AATTTACCTCAGCCAAGGGG 57.468 50.000 6.90 0.00 41.04 4.79
4691 8893 1.810441 CTGCTGCAGCTCCTCTTCG 60.810 63.158 36.61 12.57 42.66 3.79
4766 8971 4.828925 GCAGACAGCTCCGCCCTC 62.829 72.222 0.00 0.00 41.15 4.30
4900 9108 5.038033 CAGAGTCCTTCATTCTACTTACGC 58.962 45.833 0.00 0.00 0.00 4.42
4905 9113 4.682859 GCATGCAGAGTCCTTCATTCTACT 60.683 45.833 14.21 0.00 0.00 2.57
4934 9142 8.583011 ACAGTATTTGTAAACACACCACGTGC 62.583 42.308 10.91 0.00 43.55 5.34
4935 9143 5.220700 ACAGTATTTGTAAACACACCACGTG 60.221 40.000 9.08 9.08 44.58 4.49
4936 9144 4.877251 ACAGTATTTGTAAACACACCACGT 59.123 37.500 0.00 0.00 38.56 4.49
4937 9145 5.412526 ACAGTATTTGTAAACACACCACG 57.587 39.130 0.00 0.00 38.56 4.94
4938 9146 6.557110 ACAACAGTATTTGTAAACACACCAC 58.443 36.000 0.00 0.00 39.73 4.16
5054 9303 4.446371 CCAGAGGGTATGATTGACAACTC 58.554 47.826 0.00 0.00 0.00 3.01
5182 9448 1.000618 TGTAATTACACGCACCGGTGA 59.999 47.619 38.30 16.69 40.38 4.02
5336 9640 3.041940 GTCGTGGCCACAACCTCG 61.042 66.667 34.16 19.97 45.62 4.63
5358 9662 4.700365 GCCGCCTTGTTGCCGTTC 62.700 66.667 0.00 0.00 0.00 3.95
5585 9926 5.181811 TGGAGTTGCACTTTTACATCATCAG 59.818 40.000 0.00 0.00 0.00 2.90
5588 9929 6.594788 ATTGGAGTTGCACTTTTACATCAT 57.405 33.333 0.00 0.00 0.00 2.45
5722 10063 3.805307 CGGCTCTCGTCGCTCAGT 61.805 66.667 0.00 0.00 0.00 3.41
5799 10160 0.943835 CTCGCATCACACGGTTGTCA 60.944 55.000 0.00 0.00 31.66 3.58
5803 10164 0.670546 CCTTCTCGCATCACACGGTT 60.671 55.000 0.00 0.00 0.00 4.44
5804 10165 1.079819 CCTTCTCGCATCACACGGT 60.080 57.895 0.00 0.00 0.00 4.83
5806 10167 0.388520 TCACCTTCTCGCATCACACG 60.389 55.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.