Multiple sequence alignment - TraesCS1B01G161500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G161500 chr1B 100.000 3519 0 0 1 3519 278633816 278630298 0.000000e+00 6499.0
1 TraesCS1B01G161500 chr1B 93.467 199 13 0 3321 3519 278595974 278595776 2.660000e-76 296.0
2 TraesCS1B01G161500 chr1B 85.430 151 19 3 174 324 562476991 562476844 1.690000e-33 154.0
3 TraesCS1B01G161500 chr1A 89.221 2208 129 48 1 2154 249149294 249147142 0.000000e+00 2658.0
4 TraesCS1B01G161500 chr1A 94.622 502 25 1 2191 2692 249147143 249146644 0.000000e+00 776.0
5 TraesCS1B01G161500 chr1A 78.170 623 114 16 2702 3320 562926409 562925805 9.220000e-101 377.0
6 TraesCS1B01G161500 chr1D 93.873 1420 53 16 752 2156 198755484 198754084 0.000000e+00 2109.0
7 TraesCS1B01G161500 chr1D 88.596 570 34 17 2190 2729 198754095 198753527 0.000000e+00 664.0
8 TraesCS1B01G161500 chr1D 89.362 376 31 5 166 533 198756338 198755964 6.880000e-127 464.0
9 TraesCS1B01G161500 chr1D 73.966 653 136 23 2692 3320 395632820 395633462 2.110000e-57 233.0
10 TraesCS1B01G161500 chr1D 87.730 163 11 5 603 763 198755931 198755776 7.760000e-42 182.0
11 TraesCS1B01G161500 chr7A 86.231 581 72 4 2690 3269 540277460 540276887 1.070000e-174 623.0
12 TraesCS1B01G161500 chr7A 94.975 199 10 0 3321 3519 178590080 178589882 2.640000e-81 313.0
13 TraesCS1B01G161500 chr7A 88.587 184 20 1 146 328 287491263 287491446 4.570000e-54 222.0
14 TraesCS1B01G161500 chr2B 94.924 197 10 0 3321 3517 172830909 172831105 3.410000e-80 309.0
15 TraesCS1B01G161500 chr2B 93.970 199 12 0 3321 3519 172811838 172812036 5.710000e-78 302.0
16 TraesCS1B01G161500 chr2B 80.447 179 15 10 151 324 91336402 91336239 6.170000e-23 119.0
17 TraesCS1B01G161500 chr2B 77.852 149 24 7 193 333 56928791 56928644 2.250000e-12 84.2
18 TraesCS1B01G161500 chr2B 89.286 56 5 1 2692 2747 611755713 611755767 6.300000e-08 69.4
19 TraesCS1B01G161500 chr2B 94.444 36 1 1 2142 2176 71366007 71366042 2.000000e-03 54.7
20 TraesCS1B01G161500 chr5D 94.472 199 11 0 3321 3519 265975012 265974814 1.230000e-79 307.0
21 TraesCS1B01G161500 chr5D 84.354 147 16 3 1 147 483003573 483003434 1.700000e-28 137.0
22 TraesCS1B01G161500 chr3B 94.030 201 9 3 3321 3519 240814342 240814541 5.710000e-78 302.0
23 TraesCS1B01G161500 chr3B 100.000 31 0 0 2146 2176 46266130 46266100 1.360000e-04 58.4
24 TraesCS1B01G161500 chr3B 100.000 31 0 0 2146 2176 415934884 415934854 1.360000e-04 58.4
25 TraesCS1B01G161500 chr3B 100.000 31 0 0 2146 2176 545181609 545181639 1.360000e-04 58.4
26 TraesCS1B01G161500 chr2D 93.532 201 13 0 3319 3519 155847833 155847633 2.050000e-77 300.0
27 TraesCS1B01G161500 chr2D 85.246 61 7 2 2420 2479 605179539 605179480 1.050000e-05 62.1
28 TraesCS1B01G161500 chr4D 93.467 199 13 0 3321 3519 52499890 52500088 2.660000e-76 296.0
29 TraesCS1B01G161500 chr4D 91.489 47 4 0 2696 2742 70980292 70980246 8.150000e-07 65.8
30 TraesCS1B01G161500 chr2A 93.467 199 13 0 3321 3519 123216767 123216965 2.660000e-76 296.0
31 TraesCS1B01G161500 chr2A 87.719 57 6 1 2692 2748 523984169 523984224 8.150000e-07 65.8
32 TraesCS1B01G161500 chr2A 85.246 61 7 2 2420 2479 736364975 736364916 1.050000e-05 62.1
33 TraesCS1B01G161500 chr3A 89.947 189 15 2 144 331 708324190 708324005 1.260000e-59 241.0
34 TraesCS1B01G161500 chr3A 100.000 32 0 0 2145 2176 597543490 597543521 3.790000e-05 60.2
35 TraesCS1B01G161500 chr3D 88.947 190 17 2 142 330 573692009 573691823 7.600000e-57 231.0
36 TraesCS1B01G161500 chr3D 84.112 107 12 5 196 298 282946406 282946301 8.040000e-17 99.0
37 TraesCS1B01G161500 chr6A 73.924 395 83 14 2692 3074 12430323 12430709 1.320000e-29 141.0
38 TraesCS1B01G161500 chr7D 84.536 97 9 6 187 279 618174807 618174713 1.350000e-14 91.6
39 TraesCS1B01G161500 chr7D 100.000 31 0 0 2146 2176 163634819 163634789 1.360000e-04 58.4
40 TraesCS1B01G161500 chr5A 84.884 86 12 1 2692 2777 650638427 650638343 6.260000e-13 86.1
41 TraesCS1B01G161500 chr5B 100.000 31 0 0 2146 2176 477018350 477018380 1.360000e-04 58.4
42 TraesCS1B01G161500 chr4B 100.000 30 0 0 2147 2176 253683664 253683693 4.910000e-04 56.5
43 TraesCS1B01G161500 chr7B 96.875 32 1 0 2146 2177 554752708 554752677 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G161500 chr1B 278630298 278633816 3518 True 6499.00 6499 100.00000 1 3519 1 chr1B.!!$R2 3518
1 TraesCS1B01G161500 chr1A 249146644 249149294 2650 True 1717.00 2658 91.92150 1 2692 2 chr1A.!!$R2 2691
2 TraesCS1B01G161500 chr1A 562925805 562926409 604 True 377.00 377 78.17000 2702 3320 1 chr1A.!!$R1 618
3 TraesCS1B01G161500 chr1D 198753527 198756338 2811 True 854.75 2109 89.89025 166 2729 4 chr1D.!!$R1 2563
4 TraesCS1B01G161500 chr1D 395632820 395633462 642 False 233.00 233 73.96600 2692 3320 1 chr1D.!!$F1 628
5 TraesCS1B01G161500 chr7A 540276887 540277460 573 True 623.00 623 86.23100 2690 3269 1 chr7A.!!$R2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 689 0.038892 GATGGTGGCTGTTGCTGTTG 60.039 55.0 0.00 0.0 39.59 3.33 F
1291 1643 0.108377 TGTCGCGTCAATGGCACTAT 60.108 50.0 5.77 0.0 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 2784 0.320421 GCACGCTGTCCCAGTAGAAA 60.320 55.0 0.0 0.0 33.43 2.52 R
3141 3553 0.039256 CAACAACAATGCACTCCCGG 60.039 55.0 0.0 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.019673 CATGCCGACCAAATCTGAGG 58.980 55.000 0.00 0.00 0.00 3.86
134 135 3.127533 CTGCCGCACCTTAGCACC 61.128 66.667 0.00 0.00 32.06 5.01
135 136 3.899981 CTGCCGCACCTTAGCACCA 62.900 63.158 0.00 0.00 32.06 4.17
191 214 1.670015 GGAGACGAAAGAACCCCGT 59.330 57.895 0.00 0.00 39.41 5.28
194 217 3.132084 ACGAAAGAACCCCGTCGT 58.868 55.556 0.00 0.00 41.61 4.34
348 373 1.903183 GGGGAGAGCACTGGTATATCC 59.097 57.143 0.00 0.00 0.00 2.59
373 398 0.243095 GAGTGCGGGTTAACTCGAGT 59.757 55.000 31.26 17.82 33.99 4.18
380 405 2.030540 CGGGTTAACTCGAGTCAGTGAA 60.031 50.000 23.49 5.69 0.00 3.18
381 406 3.576648 GGGTTAACTCGAGTCAGTGAAG 58.423 50.000 20.33 0.00 0.00 3.02
389 419 4.461081 ACTCGAGTCAGTGAAGCTTAAGAT 59.539 41.667 13.58 0.00 0.00 2.40
393 423 5.083533 AGTCAGTGAAGCTTAAGATGGAG 57.916 43.478 6.67 0.00 0.00 3.86
395 425 4.081420 GTCAGTGAAGCTTAAGATGGAGGA 60.081 45.833 6.67 0.00 0.00 3.71
397 427 5.013079 TCAGTGAAGCTTAAGATGGAGGAAA 59.987 40.000 6.67 0.00 0.00 3.13
445 475 3.006247 GTTTGGGCAAGAGCAACAAAAA 58.994 40.909 9.86 0.00 44.75 1.94
467 497 8.532977 AAAATTGTTAATTTGAACCATCCTCG 57.467 30.769 0.75 0.00 40.05 4.63
547 577 3.838795 GTAGCGCGTGCCTTCGTG 61.839 66.667 19.02 0.00 44.31 4.35
548 578 4.351938 TAGCGCGTGCCTTCGTGT 62.352 61.111 19.02 0.00 44.31 4.49
549 579 3.851845 TAGCGCGTGCCTTCGTGTT 62.852 57.895 19.02 0.00 44.31 3.32
551 581 3.636043 CGCGTGCCTTCGTGTTGT 61.636 61.111 0.00 0.00 36.71 3.32
552 582 2.304401 CGCGTGCCTTCGTGTTGTA 61.304 57.895 0.00 0.00 36.71 2.41
553 583 1.491563 GCGTGCCTTCGTGTTGTAG 59.508 57.895 0.00 0.00 0.00 2.74
555 585 1.931709 GCGTGCCTTCGTGTTGTAGTA 60.932 52.381 0.00 0.00 0.00 1.82
557 587 1.717645 GTGCCTTCGTGTTGTAGTACG 59.282 52.381 0.00 0.00 41.38 3.67
558 588 1.337703 TGCCTTCGTGTTGTAGTACGT 59.662 47.619 0.00 0.00 40.87 3.57
559 589 1.717645 GCCTTCGTGTTGTAGTACGTG 59.282 52.381 0.00 0.00 40.87 4.49
560 590 2.859806 GCCTTCGTGTTGTAGTACGTGT 60.860 50.000 0.00 0.00 40.87 4.49
561 591 2.722629 CCTTCGTGTTGTAGTACGTGTG 59.277 50.000 0.00 0.00 40.87 3.82
562 592 3.365832 CTTCGTGTTGTAGTACGTGTGT 58.634 45.455 0.00 0.00 40.87 3.72
575 605 1.062440 ACGTGTGTATGCATGCATTCG 59.938 47.619 36.23 29.05 37.82 3.34
585 615 3.549467 TGCATTCGAGCACGTGAC 58.451 55.556 22.23 10.94 40.11 3.67
600 630 3.047877 GACGCTGTTGTTCCCCCG 61.048 66.667 0.00 0.00 0.00 5.73
601 631 4.636435 ACGCTGTTGTTCCCCCGG 62.636 66.667 0.00 0.00 0.00 5.73
610 640 0.538746 TGTTCCCCCGGAAAAAGAGC 60.539 55.000 0.73 0.00 43.86 4.09
638 668 2.348666 CGCTGTTCGGTTATCCAGAAAG 59.651 50.000 0.00 0.00 31.89 2.62
659 689 0.038892 GATGGTGGCTGTTGCTGTTG 60.039 55.000 0.00 0.00 39.59 3.33
708 741 5.428253 AGAACTAGAAAGCATATTTCGGCA 58.572 37.500 0.00 0.00 33.86 5.69
834 1173 1.671742 GGAAGCAACAGGGTCTCGA 59.328 57.895 0.00 0.00 0.00 4.04
879 1219 7.827729 ACGATTTTTGCTAGGTAGTTAGGATTT 59.172 33.333 0.00 0.00 0.00 2.17
981 1321 4.847516 CTGATCGCGCCGTTCCGA 62.848 66.667 0.00 0.00 37.91 4.55
1024 1364 1.375013 GCTACGGCGTTTCTTCCCA 60.375 57.895 21.24 0.00 0.00 4.37
1057 1409 2.517402 CTCTCGTCCTCCTCCCCG 60.517 72.222 0.00 0.00 0.00 5.73
1118 1470 4.798907 ACGATGTAGTATGCTTGTTTCTCG 59.201 41.667 0.00 0.00 0.00 4.04
1143 1495 0.895530 ATCGTGGTCGTTGATGGTCT 59.104 50.000 0.00 0.00 38.33 3.85
1144 1496 0.242825 TCGTGGTCGTTGATGGTCTC 59.757 55.000 0.00 0.00 38.33 3.36
1145 1497 0.243907 CGTGGTCGTTGATGGTCTCT 59.756 55.000 0.00 0.00 0.00 3.10
1150 1502 1.929836 GTCGTTGATGGTCTCTCATGC 59.070 52.381 0.00 0.00 0.00 4.06
1291 1643 0.108377 TGTCGCGTCAATGGCACTAT 60.108 50.000 5.77 0.00 0.00 2.12
1429 1790 2.849142 AATGAACCGCGCGTTGATGC 62.849 55.000 29.95 10.32 33.74 3.91
1447 1808 4.197498 GTGTCATGCATGCGCCCC 62.197 66.667 22.25 7.39 37.32 5.80
1464 1825 2.498167 CCCCGAATCCTAATCAGCAAG 58.502 52.381 0.00 0.00 0.00 4.01
1466 1827 2.486191 CCCGAATCCTAATCAGCAAGCT 60.486 50.000 0.00 0.00 0.00 3.74
1468 1829 3.003068 CCGAATCCTAATCAGCAAGCTTG 59.997 47.826 22.44 22.44 0.00 4.01
1469 1830 3.873361 CGAATCCTAATCAGCAAGCTTGA 59.127 43.478 30.39 10.11 0.00 3.02
1470 1831 4.514441 CGAATCCTAATCAGCAAGCTTGAT 59.486 41.667 30.39 22.23 0.00 2.57
1471 1832 5.333952 CGAATCCTAATCAGCAAGCTTGATC 60.334 44.000 30.39 13.17 0.00 2.92
1472 1833 3.461061 TCCTAATCAGCAAGCTTGATCG 58.539 45.455 30.39 17.57 0.00 3.69
1473 1834 3.118629 TCCTAATCAGCAAGCTTGATCGT 60.119 43.478 30.39 11.49 0.00 3.73
1811 2176 3.615937 CACGATCAATCTGTCTGGTTCTG 59.384 47.826 0.00 0.00 0.00 3.02
1812 2177 2.606725 CGATCAATCTGTCTGGTTCTGC 59.393 50.000 0.00 0.00 0.00 4.26
1813 2178 2.084610 TCAATCTGTCTGGTTCTGCG 57.915 50.000 0.00 0.00 0.00 5.18
1814 2179 0.445436 CAATCTGTCTGGTTCTGCGC 59.555 55.000 0.00 0.00 0.00 6.09
1815 2180 0.322975 AATCTGTCTGGTTCTGCGCT 59.677 50.000 9.73 0.00 0.00 5.92
1856 2221 2.124903 GCAACGAACGTTCTCTCTTCA 58.875 47.619 24.80 0.00 36.00 3.02
2061 2426 2.358737 CTCCACAACGGCCACCTC 60.359 66.667 2.24 0.00 33.14 3.85
2142 2507 1.224315 CATCGTCAATCCAGCCCCA 59.776 57.895 0.00 0.00 0.00 4.96
2149 2514 0.846015 CAATCCAGCCCCAGGTATGA 59.154 55.000 0.00 0.00 0.00 2.15
2152 2517 0.253160 TCCAGCCCCAGGTATGAACT 60.253 55.000 0.00 0.00 0.00 3.01
2153 2518 1.009060 TCCAGCCCCAGGTATGAACTA 59.991 52.381 0.00 0.00 0.00 2.24
2154 2519 1.141053 CCAGCCCCAGGTATGAACTAC 59.859 57.143 0.00 0.00 0.00 2.73
2155 2520 2.119495 CAGCCCCAGGTATGAACTACT 58.881 52.381 0.00 0.00 0.00 2.57
2156 2521 2.103263 CAGCCCCAGGTATGAACTACTC 59.897 54.545 0.00 0.00 0.00 2.59
2157 2522 1.416772 GCCCCAGGTATGAACTACTCC 59.583 57.143 0.00 0.00 0.00 3.85
2158 2523 2.047830 CCCCAGGTATGAACTACTCCC 58.952 57.143 0.00 0.00 0.00 4.30
2159 2524 2.360423 CCCCAGGTATGAACTACTCCCT 60.360 54.545 0.00 0.00 0.00 4.20
2160 2525 2.966516 CCCAGGTATGAACTACTCCCTC 59.033 54.545 0.00 0.00 0.00 4.30
2161 2526 2.966516 CCAGGTATGAACTACTCCCTCC 59.033 54.545 0.00 0.00 0.00 4.30
2162 2527 2.623889 CAGGTATGAACTACTCCCTCCG 59.376 54.545 0.00 0.00 0.00 4.63
2163 2528 2.244252 AGGTATGAACTACTCCCTCCGT 59.756 50.000 0.00 0.00 0.00 4.69
2164 2529 3.029570 GGTATGAACTACTCCCTCCGTT 58.970 50.000 0.00 0.00 0.00 4.44
2165 2530 3.067883 GGTATGAACTACTCCCTCCGTTC 59.932 52.174 0.00 0.00 37.02 3.95
2166 2531 1.553706 TGAACTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 35.97 3.62
2167 2532 1.203087 TGAACTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 35.97 3.53
2168 2533 1.897802 GAACTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 31.89 3.53
2169 2534 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2170 2535 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2171 2536 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2172 2537 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2173 2538 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2174 2539 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2175 2540 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2176 2541 4.227527 ACTCCCTCCGTTCCAAAATAGATT 59.772 41.667 0.00 0.00 0.00 2.40
2177 2542 4.523083 TCCCTCCGTTCCAAAATAGATTG 58.477 43.478 0.00 0.00 0.00 2.67
2189 2554 6.124088 CAAAATAGATTGGAACGGAGGAAG 57.876 41.667 0.00 0.00 0.00 3.46
2197 2562 3.705051 TGGAACGGAGGAAGTATGTACT 58.295 45.455 0.00 0.00 38.39 2.73
2227 2592 3.986996 TTTCTGATCACTGCATCCTCA 57.013 42.857 0.00 0.00 0.00 3.86
2267 2632 0.798159 TCTGTGATGTTGATGTGCGC 59.202 50.000 0.00 0.00 0.00 6.09
2410 2775 0.108585 ACATCGTGTGCAAGAACCCT 59.891 50.000 0.00 0.00 0.00 4.34
2419 2784 1.985159 TGCAAGAACCCTGACCAGTAT 59.015 47.619 0.00 0.00 0.00 2.12
2535 2900 6.305693 ACATTAAGGCGCATCTTAATCTTC 57.694 37.500 21.52 0.00 43.86 2.87
2555 2920 2.740440 CACACATGCACGGGCGTA 60.740 61.111 2.80 0.00 45.35 4.42
2564 2929 1.433053 GCACGGGCGTATGTATGCAA 61.433 55.000 0.00 0.00 39.92 4.08
2592 2957 3.508793 TCGTAGTTAGGTTGGGAGTTCTG 59.491 47.826 0.00 0.00 0.00 3.02
2669 3064 2.093658 TCAAATGAGCCCCGTAGTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
2681 3076 4.627467 CCCGTAGTTCTCTGTTCTGAAATG 59.373 45.833 0.00 0.00 0.00 2.32
2688 3083 7.588512 AGTTCTCTGTTCTGAAATGTTATTGC 58.411 34.615 0.00 0.00 0.00 3.56
2770 3174 4.209703 CGTTACAACTCAACATAACACCGT 59.790 41.667 0.00 0.00 0.00 4.83
2775 3186 6.488817 ACAACTCAACATAACACCGTAAAAC 58.511 36.000 0.00 0.00 0.00 2.43
2789 3200 7.372714 ACACCGTAAAACAAAAGAAAAACTCT 58.627 30.769 0.00 0.00 35.13 3.24
2803 3214 6.240894 AGAAAAACTCTGGCAAGATACATGA 58.759 36.000 0.00 0.00 31.12 3.07
2805 3216 5.426689 AAACTCTGGCAAGATACATGAGA 57.573 39.130 0.00 0.00 0.00 3.27
2840 3251 7.145932 AGCGACAAAGCTCAAAAATAATAGT 57.854 32.000 0.00 0.00 45.67 2.12
2842 3253 8.175716 AGCGACAAAGCTCAAAAATAATAGTAC 58.824 33.333 0.00 0.00 45.67 2.73
2843 3254 7.960738 GCGACAAAGCTCAAAAATAATAGTACA 59.039 33.333 0.00 0.00 0.00 2.90
2844 3255 9.478019 CGACAAAGCTCAAAAATAATAGTACAG 57.522 33.333 0.00 0.00 0.00 2.74
2860 3271 1.279496 ACAGCAAGACATAGGAGCCA 58.721 50.000 0.00 0.00 0.00 4.75
2884 3295 2.010145 ACATGATCGGAAGACCAACG 57.990 50.000 0.00 0.00 46.97 4.10
2909 3320 2.224314 CGAAGAAAGCCAACTCCAGAAC 59.776 50.000 0.00 0.00 0.00 3.01
2917 3328 1.070134 CCAACTCCAGAACGAGACCAA 59.930 52.381 0.00 0.00 33.83 3.67
2921 3332 0.824595 TCCAGAACGAGACCAACCGA 60.825 55.000 0.00 0.00 0.00 4.69
2926 3337 1.935199 GAACGAGACCAACCGACAAAA 59.065 47.619 0.00 0.00 0.00 2.44
2927 3338 2.027003 ACGAGACCAACCGACAAAAA 57.973 45.000 0.00 0.00 0.00 1.94
2949 3360 4.384599 GCTATGCCATCGCCATCA 57.615 55.556 0.00 0.00 0.00 3.07
2952 3363 0.957395 CTATGCCATCGCCATCACCC 60.957 60.000 0.00 0.00 0.00 4.61
2979 3390 3.017442 TCCAACAAAACAACGTCATCCA 58.983 40.909 0.00 0.00 0.00 3.41
3035 3446 2.045926 GCTCGAAGGGTGCCACAT 60.046 61.111 0.00 0.00 0.00 3.21
3038 3449 2.047274 CGAAGGGTGCCACATCGT 60.047 61.111 0.00 0.00 0.00 3.73
3065 3477 1.136329 ATGGAGTGCTCACCACCCTT 61.136 55.000 7.10 0.00 45.83 3.95
3077 3489 1.078918 CACCCTTGAGCGCAGATGA 60.079 57.895 11.47 0.00 0.00 2.92
3079 3491 0.392193 ACCCTTGAGCGCAGATGAAG 60.392 55.000 11.47 0.00 0.00 3.02
3081 3493 0.392193 CCTTGAGCGCAGATGAAGGT 60.392 55.000 11.47 0.00 0.00 3.50
3102 3514 0.536006 AGTGCCAAGACAACAGAGGC 60.536 55.000 0.00 0.00 45.41 4.70
3104 3516 2.952714 GCCAAGACAACAGAGGCAT 58.047 52.632 0.00 0.00 44.59 4.40
3110 3522 3.423539 AGACAACAGAGGCATGCTTTA 57.576 42.857 18.92 0.00 0.00 1.85
3133 3545 0.790207 CACAATCACCTCACCGAACG 59.210 55.000 0.00 0.00 0.00 3.95
3141 3553 1.139095 CTCACCGAACGTAGCTCCC 59.861 63.158 0.00 0.00 0.00 4.30
3143 3555 3.446570 ACCGAACGTAGCTCCCCG 61.447 66.667 0.00 0.00 0.00 5.73
3144 3556 4.203076 CCGAACGTAGCTCCCCGG 62.203 72.222 0.00 0.00 0.00 5.73
3156 3568 2.035626 CCCCGGGAGTGCATTGTT 59.964 61.111 26.32 0.00 0.00 2.83
3191 3604 0.039437 GACACACGGCGAGAAGAAGA 60.039 55.000 16.62 0.00 0.00 2.87
3220 3634 3.724508 ATAGAACTCACCTCAGCGATG 57.275 47.619 0.00 0.00 0.00 3.84
3248 3662 0.390340 GCGACCTTGCTCATGAGACA 60.390 55.000 27.04 19.42 0.00 3.41
3251 3665 2.353109 CGACCTTGCTCATGAGACAGAA 60.353 50.000 27.04 11.07 0.00 3.02
3321 3747 2.646121 GGTTTTCACCCAGAGCCTG 58.354 57.895 0.00 0.00 37.03 4.85
3322 3748 0.110486 GGTTTTCACCCAGAGCCTGA 59.890 55.000 4.00 0.00 37.03 3.86
3323 3749 1.272147 GGTTTTCACCCAGAGCCTGAT 60.272 52.381 4.00 0.00 37.03 2.90
3324 3750 2.026262 GGTTTTCACCCAGAGCCTGATA 60.026 50.000 4.00 0.00 37.03 2.15
3325 3751 3.561313 GGTTTTCACCCAGAGCCTGATAA 60.561 47.826 4.00 0.00 37.03 1.75
3326 3752 3.350219 TTTCACCCAGAGCCTGATAAC 57.650 47.619 4.00 0.00 32.44 1.89
3327 3753 1.204146 TCACCCAGAGCCTGATAACC 58.796 55.000 4.00 0.00 32.44 2.85
3328 3754 0.181350 CACCCAGAGCCTGATAACCC 59.819 60.000 4.00 0.00 32.44 4.11
3329 3755 0.253160 ACCCAGAGCCTGATAACCCA 60.253 55.000 4.00 0.00 32.44 4.51
3330 3756 0.181350 CCCAGAGCCTGATAACCCAC 59.819 60.000 4.00 0.00 32.44 4.61
3331 3757 0.911769 CCAGAGCCTGATAACCCACA 59.088 55.000 4.00 0.00 32.44 4.17
3332 3758 1.281867 CCAGAGCCTGATAACCCACAA 59.718 52.381 4.00 0.00 32.44 3.33
3333 3759 2.636830 CAGAGCCTGATAACCCACAAG 58.363 52.381 0.00 0.00 32.44 3.16
3334 3760 2.026822 CAGAGCCTGATAACCCACAAGT 60.027 50.000 0.00 0.00 32.44 3.16
3335 3761 3.197766 CAGAGCCTGATAACCCACAAGTA 59.802 47.826 0.00 0.00 32.44 2.24
3336 3762 4.040755 AGAGCCTGATAACCCACAAGTAT 58.959 43.478 0.00 0.00 0.00 2.12
3337 3763 5.070446 CAGAGCCTGATAACCCACAAGTATA 59.930 44.000 0.00 0.00 32.44 1.47
3338 3764 5.305644 AGAGCCTGATAACCCACAAGTATAG 59.694 44.000 0.00 0.00 0.00 1.31
3339 3765 4.348168 AGCCTGATAACCCACAAGTATAGG 59.652 45.833 0.00 0.00 0.00 2.57
3348 3774 5.324832 CCCACAAGTATAGGGGATCAATT 57.675 43.478 0.00 0.00 43.57 2.32
3349 3775 5.072741 CCCACAAGTATAGGGGATCAATTG 58.927 45.833 0.00 0.00 43.57 2.32
3350 3776 5.399038 CCCACAAGTATAGGGGATCAATTGT 60.399 44.000 5.13 0.00 43.57 2.71
3351 3777 6.183361 CCCACAAGTATAGGGGATCAATTGTA 60.183 42.308 5.13 0.00 43.57 2.41
3352 3778 6.936900 CCACAAGTATAGGGGATCAATTGTAG 59.063 42.308 5.13 0.00 0.00 2.74
3353 3779 6.428159 CACAAGTATAGGGGATCAATTGTAGC 59.572 42.308 5.13 0.00 0.00 3.58
3354 3780 5.763876 AGTATAGGGGATCAATTGTAGCC 57.236 43.478 5.13 4.61 0.00 3.93
3355 3781 5.415961 AGTATAGGGGATCAATTGTAGCCT 58.584 41.667 5.13 0.00 0.00 4.58
3356 3782 5.852250 AGTATAGGGGATCAATTGTAGCCTT 59.148 40.000 5.13 1.39 0.00 4.35
3357 3783 5.669798 ATAGGGGATCAATTGTAGCCTTT 57.330 39.130 5.13 1.09 0.00 3.11
3358 3784 3.903467 AGGGGATCAATTGTAGCCTTTC 58.097 45.455 5.13 0.57 0.00 2.62
3359 3785 3.529319 AGGGGATCAATTGTAGCCTTTCT 59.471 43.478 5.13 2.54 0.00 2.52
3360 3786 3.885901 GGGGATCAATTGTAGCCTTTCTC 59.114 47.826 5.13 0.00 0.00 2.87
3361 3787 3.561725 GGGATCAATTGTAGCCTTTCTCG 59.438 47.826 5.13 0.00 0.00 4.04
3362 3788 4.442706 GGATCAATTGTAGCCTTTCTCGA 58.557 43.478 5.13 0.00 0.00 4.04
3363 3789 5.059833 GGATCAATTGTAGCCTTTCTCGAT 58.940 41.667 5.13 0.00 0.00 3.59
3364 3790 6.223852 GGATCAATTGTAGCCTTTCTCGATA 58.776 40.000 5.13 0.00 0.00 2.92
3365 3791 6.706270 GGATCAATTGTAGCCTTTCTCGATAA 59.294 38.462 5.13 0.00 0.00 1.75
3366 3792 7.095439 GGATCAATTGTAGCCTTTCTCGATAAG 60.095 40.741 5.13 0.00 0.00 1.73
3367 3793 6.640518 TCAATTGTAGCCTTTCTCGATAAGT 58.359 36.000 5.13 0.00 0.00 2.24
3368 3794 7.778083 TCAATTGTAGCCTTTCTCGATAAGTA 58.222 34.615 5.13 0.00 0.00 2.24
3369 3795 8.255206 TCAATTGTAGCCTTTCTCGATAAGTAA 58.745 33.333 5.13 0.00 0.00 2.24
3370 3796 8.543774 CAATTGTAGCCTTTCTCGATAAGTAAG 58.456 37.037 0.00 0.00 33.42 2.34
3371 3797 7.400599 TTGTAGCCTTTCTCGATAAGTAAGA 57.599 36.000 6.66 0.00 35.08 2.10
3372 3798 7.028926 TGTAGCCTTTCTCGATAAGTAAGAG 57.971 40.000 6.66 0.00 35.08 2.85
3373 3799 6.602406 TGTAGCCTTTCTCGATAAGTAAGAGT 59.398 38.462 6.66 0.00 35.08 3.24
3374 3800 5.897050 AGCCTTTCTCGATAAGTAAGAGTG 58.103 41.667 6.66 0.00 35.08 3.51
3375 3801 5.419471 AGCCTTTCTCGATAAGTAAGAGTGT 59.581 40.000 6.66 0.00 35.08 3.55
3376 3802 5.744819 GCCTTTCTCGATAAGTAAGAGTGTC 59.255 44.000 6.66 0.00 35.08 3.67
3377 3803 5.966503 CCTTTCTCGATAAGTAAGAGTGTCG 59.033 44.000 6.66 0.00 35.08 4.35
3378 3804 6.183360 CCTTTCTCGATAAGTAAGAGTGTCGA 60.183 42.308 6.66 0.00 35.08 4.20
3379 3805 6.732531 TTCTCGATAAGTAAGAGTGTCGAA 57.267 37.500 0.00 0.00 37.61 3.71
3380 3806 6.104439 TCTCGATAAGTAAGAGTGTCGAAC 57.896 41.667 0.00 0.00 37.61 3.95
3381 3807 5.064452 TCTCGATAAGTAAGAGTGTCGAACC 59.936 44.000 0.00 0.00 37.61 3.62
3382 3808 4.095483 TCGATAAGTAAGAGTGTCGAACCC 59.905 45.833 0.00 0.00 35.48 4.11
3383 3809 4.142534 CGATAAGTAAGAGTGTCGAACCCA 60.143 45.833 0.00 0.00 0.00 4.51
3384 3810 5.620654 CGATAAGTAAGAGTGTCGAACCCAA 60.621 44.000 0.00 0.00 0.00 4.12
3385 3811 3.382048 AGTAAGAGTGTCGAACCCAAC 57.618 47.619 0.00 0.00 0.00 3.77
3386 3812 2.056577 GTAAGAGTGTCGAACCCAACG 58.943 52.381 0.00 0.00 0.00 4.10
3387 3813 0.748450 AAGAGTGTCGAACCCAACGA 59.252 50.000 0.00 0.00 37.43 3.85
3388 3814 0.314302 AGAGTGTCGAACCCAACGAG 59.686 55.000 0.00 0.00 40.37 4.18
3389 3815 0.313043 GAGTGTCGAACCCAACGAGA 59.687 55.000 0.00 0.00 40.37 4.04
3390 3816 0.748450 AGTGTCGAACCCAACGAGAA 59.252 50.000 0.00 0.00 40.37 2.87
3391 3817 1.137513 GTGTCGAACCCAACGAGAAG 58.862 55.000 0.00 0.00 40.37 2.85
3392 3818 0.748450 TGTCGAACCCAACGAGAAGT 59.252 50.000 0.00 0.00 40.37 3.01
3393 3819 1.137479 TGTCGAACCCAACGAGAAGTT 59.863 47.619 0.00 0.00 45.45 2.66
3394 3820 2.361757 TGTCGAACCCAACGAGAAGTTA 59.638 45.455 0.00 0.00 42.02 2.24
3395 3821 3.181477 TGTCGAACCCAACGAGAAGTTAA 60.181 43.478 0.00 0.00 42.02 2.01
3396 3822 3.803778 GTCGAACCCAACGAGAAGTTAAA 59.196 43.478 0.00 0.00 42.02 1.52
3397 3823 4.053295 TCGAACCCAACGAGAAGTTAAAG 58.947 43.478 0.00 0.00 42.02 1.85
3398 3824 3.185797 CGAACCCAACGAGAAGTTAAAGG 59.814 47.826 0.00 0.00 42.02 3.11
3399 3825 3.851458 ACCCAACGAGAAGTTAAAGGT 57.149 42.857 0.00 0.00 42.02 3.50
3400 3826 4.961438 ACCCAACGAGAAGTTAAAGGTA 57.039 40.909 0.00 0.00 42.02 3.08
3401 3827 4.891260 ACCCAACGAGAAGTTAAAGGTAG 58.109 43.478 0.00 0.00 42.02 3.18
3402 3828 4.590222 ACCCAACGAGAAGTTAAAGGTAGA 59.410 41.667 0.00 0.00 42.02 2.59
3403 3829 5.070847 ACCCAACGAGAAGTTAAAGGTAGAA 59.929 40.000 0.00 0.00 42.02 2.10
3404 3830 6.171213 CCCAACGAGAAGTTAAAGGTAGAAT 58.829 40.000 0.00 0.00 42.02 2.40
3405 3831 6.653740 CCCAACGAGAAGTTAAAGGTAGAATT 59.346 38.462 0.00 0.00 42.02 2.17
3406 3832 7.174426 CCCAACGAGAAGTTAAAGGTAGAATTT 59.826 37.037 0.00 0.00 42.02 1.82
3407 3833 9.211485 CCAACGAGAAGTTAAAGGTAGAATTTA 57.789 33.333 0.00 0.00 42.02 1.40
3430 3856 9.760077 TTTATATTCCCTTCAAGTTCTATCGAC 57.240 33.333 0.00 0.00 0.00 4.20
3431 3857 4.467198 TTCCCTTCAAGTTCTATCGACC 57.533 45.455 0.00 0.00 0.00 4.79
3432 3858 3.437213 TCCCTTCAAGTTCTATCGACCA 58.563 45.455 0.00 0.00 0.00 4.02
3433 3859 3.194968 TCCCTTCAAGTTCTATCGACCAC 59.805 47.826 0.00 0.00 0.00 4.16
3434 3860 3.522553 CCTTCAAGTTCTATCGACCACC 58.477 50.000 0.00 0.00 0.00 4.61
3435 3861 2.933495 TCAAGTTCTATCGACCACCG 57.067 50.000 0.00 0.00 40.25 4.94
3445 3871 1.830279 TCGACCACCGATACAACTCT 58.170 50.000 0.00 0.00 43.23 3.24
3446 3872 2.989909 TCGACCACCGATACAACTCTA 58.010 47.619 0.00 0.00 43.23 2.43
3447 3873 3.548770 TCGACCACCGATACAACTCTAT 58.451 45.455 0.00 0.00 43.23 1.98
3448 3874 3.314357 TCGACCACCGATACAACTCTATG 59.686 47.826 0.00 0.00 43.23 2.23
3449 3875 3.381949 GACCACCGATACAACTCTATGC 58.618 50.000 0.00 0.00 0.00 3.14
3450 3876 2.223735 ACCACCGATACAACTCTATGCG 60.224 50.000 0.00 0.00 0.00 4.73
3451 3877 1.787155 CACCGATACAACTCTATGCGC 59.213 52.381 0.00 0.00 0.00 6.09
3452 3878 1.407618 ACCGATACAACTCTATGCGCA 59.592 47.619 14.96 14.96 0.00 6.09
3453 3879 1.787155 CCGATACAACTCTATGCGCAC 59.213 52.381 14.90 0.00 0.00 5.34
3454 3880 2.543861 CCGATACAACTCTATGCGCACT 60.544 50.000 14.90 4.70 0.00 4.40
3455 3881 3.116300 CGATACAACTCTATGCGCACTT 58.884 45.455 14.90 0.00 0.00 3.16
3456 3882 4.287720 CGATACAACTCTATGCGCACTTA 58.712 43.478 14.90 0.05 0.00 2.24
3457 3883 4.738252 CGATACAACTCTATGCGCACTTAA 59.262 41.667 14.90 0.00 0.00 1.85
3458 3884 5.331607 CGATACAACTCTATGCGCACTTAAC 60.332 44.000 14.90 0.00 0.00 2.01
3459 3885 2.666508 ACAACTCTATGCGCACTTAACG 59.333 45.455 14.90 0.92 0.00 3.18
3460 3886 2.649331 ACTCTATGCGCACTTAACGT 57.351 45.000 14.90 2.21 0.00 3.99
3461 3887 2.955614 ACTCTATGCGCACTTAACGTT 58.044 42.857 14.90 5.88 0.00 3.99
3462 3888 2.666508 ACTCTATGCGCACTTAACGTTG 59.333 45.455 14.90 0.00 0.00 4.10
3463 3889 1.996898 TCTATGCGCACTTAACGTTGG 59.003 47.619 14.90 6.30 0.00 3.77
3464 3890 0.444651 TATGCGCACTTAACGTTGGC 59.555 50.000 14.90 8.41 0.00 4.52
3465 3891 1.234615 ATGCGCACTTAACGTTGGCT 61.235 50.000 14.90 0.00 0.00 4.75
3466 3892 1.281656 GCGCACTTAACGTTGGCTT 59.718 52.632 11.99 0.00 0.00 4.35
3467 3893 0.317519 GCGCACTTAACGTTGGCTTT 60.318 50.000 11.99 0.00 0.00 3.51
3468 3894 1.069771 GCGCACTTAACGTTGGCTTTA 60.070 47.619 11.99 0.00 0.00 1.85
3469 3895 2.567067 CGCACTTAACGTTGGCTTTAC 58.433 47.619 11.99 0.00 0.00 2.01
3470 3896 2.663606 CGCACTTAACGTTGGCTTTACC 60.664 50.000 11.99 0.00 39.84 2.85
3471 3897 2.551032 GCACTTAACGTTGGCTTTACCT 59.449 45.455 11.99 0.00 40.22 3.08
3472 3898 3.747529 GCACTTAACGTTGGCTTTACCTA 59.252 43.478 11.99 0.00 40.22 3.08
3473 3899 4.142966 GCACTTAACGTTGGCTTTACCTAG 60.143 45.833 11.99 0.00 40.22 3.02
3474 3900 5.232463 CACTTAACGTTGGCTTTACCTAGA 58.768 41.667 11.99 0.00 40.22 2.43
3475 3901 5.697633 CACTTAACGTTGGCTTTACCTAGAA 59.302 40.000 11.99 0.00 40.22 2.10
3476 3902 5.698089 ACTTAACGTTGGCTTTACCTAGAAC 59.302 40.000 11.99 0.00 40.22 3.01
3477 3903 3.756933 ACGTTGGCTTTACCTAGAACA 57.243 42.857 0.00 0.00 40.22 3.18
3478 3904 4.075963 ACGTTGGCTTTACCTAGAACAA 57.924 40.909 0.00 0.00 40.22 2.83
3479 3905 4.062991 ACGTTGGCTTTACCTAGAACAAG 58.937 43.478 0.00 0.00 40.22 3.16
3480 3906 4.062991 CGTTGGCTTTACCTAGAACAAGT 58.937 43.478 0.00 0.00 40.22 3.16
3481 3907 5.221501 ACGTTGGCTTTACCTAGAACAAGTA 60.222 40.000 0.00 0.00 40.22 2.24
3482 3908 5.873164 CGTTGGCTTTACCTAGAACAAGTAT 59.127 40.000 0.00 0.00 40.22 2.12
3483 3909 6.183360 CGTTGGCTTTACCTAGAACAAGTATG 60.183 42.308 0.00 0.00 40.22 2.39
3484 3910 6.614694 TGGCTTTACCTAGAACAAGTATGA 57.385 37.500 0.00 0.00 40.22 2.15
3485 3911 7.011499 TGGCTTTACCTAGAACAAGTATGAA 57.989 36.000 0.00 0.00 40.22 2.57
3486 3912 7.455058 TGGCTTTACCTAGAACAAGTATGAAA 58.545 34.615 0.00 0.00 40.22 2.69
3487 3913 7.389607 TGGCTTTACCTAGAACAAGTATGAAAC 59.610 37.037 0.00 0.00 40.22 2.78
3488 3914 7.606839 GGCTTTACCTAGAACAAGTATGAAACT 59.393 37.037 0.00 0.00 35.99 2.66
3489 3915 9.649167 GCTTTACCTAGAACAAGTATGAAACTA 57.351 33.333 0.00 0.00 37.50 2.24
3501 3927 9.569122 ACAAGTATGAAACTATTTTGTAGGTGT 57.431 29.630 0.00 0.00 37.50 4.16
3502 3928 9.825972 CAAGTATGAAACTATTTTGTAGGTGTG 57.174 33.333 0.00 0.00 37.50 3.82
3503 3929 9.787435 AAGTATGAAACTATTTTGTAGGTGTGA 57.213 29.630 0.00 0.00 37.50 3.58
3504 3930 9.959721 AGTATGAAACTATTTTGTAGGTGTGAT 57.040 29.630 0.00 0.00 36.36 3.06
3515 3941 9.975218 ATTTTGTAGGTGTGATAGAATAGGTTT 57.025 29.630 0.00 0.00 0.00 3.27
3516 3942 8.786826 TTTGTAGGTGTGATAGAATAGGTTTG 57.213 34.615 0.00 0.00 0.00 2.93
3517 3943 6.346096 TGTAGGTGTGATAGAATAGGTTTGC 58.654 40.000 0.00 0.00 0.00 3.68
3518 3944 5.435686 AGGTGTGATAGAATAGGTTTGCA 57.564 39.130 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.464373 AGATTTGGTCGGCATGCGAT 60.464 50.000 12.44 0.00 0.00 4.58
19 20 1.078497 AGATTTGGTCGGCATGCGA 60.078 52.632 12.44 9.85 0.00 5.10
21 22 0.379669 CTCAGATTTGGTCGGCATGC 59.620 55.000 9.90 9.90 0.00 4.06
23 24 0.107017 CCCTCAGATTTGGTCGGCAT 60.107 55.000 0.00 0.00 0.00 4.40
27 28 1.815421 CGGCCCTCAGATTTGGTCG 60.815 63.158 0.00 0.00 41.28 4.79
116 117 3.804193 GTGCTAAGGTGCGGCAGC 61.804 66.667 23.64 23.64 45.41 5.25
117 118 3.127533 GGTGCTAAGGTGCGGCAG 61.128 66.667 1.18 0.00 36.62 4.85
118 119 2.762969 ATTGGTGCTAAGGTGCGGCA 62.763 55.000 0.00 0.00 35.36 5.69
134 135 3.585990 GGATCCGGCGGTGCATTG 61.586 66.667 27.32 0.00 0.00 2.82
135 136 4.875713 GGGATCCGGCGGTGCATT 62.876 66.667 27.32 6.81 0.00 3.56
238 261 1.894756 CTCTACTCCTCCCTCGCCG 60.895 68.421 0.00 0.00 0.00 6.46
241 264 2.048601 TCCTACTCTACTCCTCCCTCG 58.951 57.143 0.00 0.00 0.00 4.63
252 275 1.630442 GGGCCCCCTTCCTACTCTA 59.370 63.158 12.23 0.00 0.00 2.43
279 303 1.437986 CGAGAGGAAACCCTAGCCG 59.562 63.158 0.00 0.00 33.25 5.52
324 348 2.531483 TACCAGTGCTCTCCCCCTCC 62.531 65.000 0.00 0.00 0.00 4.30
373 398 4.096681 TCCTCCATCTTAAGCTTCACTGA 58.903 43.478 0.00 0.00 0.00 3.41
380 405 7.126421 TCTCAAGTATTTCCTCCATCTTAAGCT 59.874 37.037 0.00 0.00 0.00 3.74
381 406 7.275920 TCTCAAGTATTTCCTCCATCTTAAGC 58.724 38.462 0.00 0.00 0.00 3.09
413 443 2.408271 TGCCCAAACAACATGCAAAA 57.592 40.000 0.00 0.00 0.00 2.44
414 444 2.093288 TCTTGCCCAAACAACATGCAAA 60.093 40.909 0.00 0.00 40.96 3.68
426 456 3.557228 ATTTTTGTTGCTCTTGCCCAA 57.443 38.095 0.00 0.00 38.71 4.12
445 475 6.834168 ACGAGGATGGTTCAAATTAACAAT 57.166 33.333 0.00 0.00 0.00 2.71
501 531 6.908825 TCCGTCCATCAAAAGAACAAAATAG 58.091 36.000 0.00 0.00 0.00 1.73
538 568 1.337703 ACGTACTACAACACGAAGGCA 59.662 47.619 0.62 0.00 40.56 4.75
539 569 1.717645 CACGTACTACAACACGAAGGC 59.282 52.381 0.62 0.00 40.56 4.35
541 571 3.365832 ACACACGTACTACAACACGAAG 58.634 45.455 0.62 0.00 40.56 3.79
542 572 3.419264 ACACACGTACTACAACACGAA 57.581 42.857 0.62 0.00 40.56 3.85
543 573 4.465921 CATACACACGTACTACAACACGA 58.534 43.478 0.62 0.00 40.56 4.35
545 575 3.982701 TGCATACACACGTACTACAACAC 59.017 43.478 0.00 0.00 0.00 3.32
546 576 4.240175 TGCATACACACGTACTACAACA 57.760 40.909 0.00 0.00 0.00 3.33
547 577 4.491924 GCATGCATACACACGTACTACAAC 60.492 45.833 14.21 0.00 0.00 3.32
548 578 3.615056 GCATGCATACACACGTACTACAA 59.385 43.478 14.21 0.00 0.00 2.41
549 579 3.183754 GCATGCATACACACGTACTACA 58.816 45.455 14.21 0.00 0.00 2.74
550 580 3.183754 TGCATGCATACACACGTACTAC 58.816 45.455 18.46 0.00 0.00 2.73
551 581 3.512033 TGCATGCATACACACGTACTA 57.488 42.857 18.46 0.00 0.00 1.82
552 582 2.378445 TGCATGCATACACACGTACT 57.622 45.000 18.46 0.00 0.00 2.73
553 583 3.607439 GAATGCATGCATACACACGTAC 58.393 45.455 32.36 11.86 35.31 3.67
555 585 1.062440 CGAATGCATGCATACACACGT 59.938 47.619 32.36 15.83 35.31 4.49
557 587 2.852143 GCTCGAATGCATGCATACACAC 60.852 50.000 32.36 18.31 35.31 3.82
558 588 1.331447 GCTCGAATGCATGCATACACA 59.669 47.619 32.36 15.83 35.31 3.72
559 589 1.331447 TGCTCGAATGCATGCATACAC 59.669 47.619 32.36 23.27 38.12 2.90
560 590 1.331447 GTGCTCGAATGCATGCATACA 59.669 47.619 32.36 21.15 45.23 2.29
561 591 1.658373 CGTGCTCGAATGCATGCATAC 60.658 52.381 32.36 23.12 45.23 2.39
562 592 0.582960 CGTGCTCGAATGCATGCATA 59.417 50.000 32.36 16.88 45.23 3.14
575 605 1.762222 AACAACAGCGTCACGTGCTC 61.762 55.000 11.67 5.58 41.72 4.26
585 615 3.835790 TTCCGGGGGAACAACAGCG 62.836 63.158 0.00 0.00 36.71 5.18
600 630 1.537202 AGCGTCACATGCTCTTTTTCC 59.463 47.619 0.00 0.00 34.99 3.13
601 631 2.031682 ACAGCGTCACATGCTCTTTTTC 60.032 45.455 0.00 0.00 38.65 2.29
610 640 1.424403 TAACCGAACAGCGTCACATG 58.576 50.000 0.00 0.00 38.67 3.21
638 668 0.607489 ACAGCAACAGCCACCATCTC 60.607 55.000 0.00 0.00 0.00 2.75
659 689 5.292101 CCTCTACGTGATCAAATCTTTGGTC 59.708 44.000 8.64 8.64 46.05 4.02
719 754 6.260050 CGCCAAGGAATATGCTTTCTAGTTTA 59.740 38.462 0.00 0.00 0.00 2.01
805 1144 0.098200 GTTGCTTCCCGCGGTAAATC 59.902 55.000 26.12 13.84 43.27 2.17
834 1173 1.537814 TAACACCCGCGTGATCCAGT 61.538 55.000 7.31 0.00 43.14 4.00
879 1219 6.093082 GCGAGGCTACTTGTAAGGATTAAAAA 59.907 38.462 0.00 0.00 24.95 1.94
884 1224 2.158943 GGCGAGGCTACTTGTAAGGATT 60.159 50.000 0.00 0.00 0.00 3.01
892 1232 1.017387 GGAAATGGCGAGGCTACTTG 58.983 55.000 0.00 0.00 0.00 3.16
1045 1385 1.522569 CATTGACGGGGAGGAGGAC 59.477 63.158 0.00 0.00 0.00 3.85
1057 1409 3.029810 TGCACACGCACCATTGAC 58.970 55.556 0.00 0.00 45.36 3.18
1098 1450 6.183360 CGAAACGAGAAACAAGCATACTACAT 60.183 38.462 0.00 0.00 0.00 2.29
1118 1470 1.411394 TCAACGACCACGATCGAAAC 58.589 50.000 24.34 8.97 45.13 2.78
1143 1495 1.070275 CCAGCGGCTATGCATGAGA 59.930 57.895 10.16 0.00 37.31 3.27
1144 1496 1.227764 ACCAGCGGCTATGCATGAG 60.228 57.895 10.16 4.20 37.31 2.90
1145 1497 1.524393 CACCAGCGGCTATGCATGA 60.524 57.895 10.16 0.00 37.31 3.07
1150 1502 1.522355 CTCCACACCAGCGGCTATG 60.522 63.158 0.26 7.04 0.00 2.23
1397 1754 5.220303 GCGCGGTTCATTTGCAAATAAATTA 60.220 36.000 23.69 5.46 0.00 1.40
1429 1790 4.541482 GGGCGCATGCATGACACG 62.541 66.667 30.64 23.25 45.35 4.49
1433 1794 4.792804 TTCGGGGCGCATGCATGA 62.793 61.111 30.64 4.21 45.35 3.07
1447 1808 3.873361 TCAAGCTTGCTGATTAGGATTCG 59.127 43.478 21.99 0.00 0.00 3.34
1464 1825 1.728971 CAGAGAACCACACGATCAAGC 59.271 52.381 0.00 0.00 0.00 4.01
1466 1827 1.069978 TGCAGAGAACCACACGATCAA 59.930 47.619 0.00 0.00 0.00 2.57
1468 1829 1.354040 CTGCAGAGAACCACACGATC 58.646 55.000 8.42 0.00 0.00 3.69
1469 1830 0.671781 GCTGCAGAGAACCACACGAT 60.672 55.000 20.43 0.00 0.00 3.73
1470 1831 1.300931 GCTGCAGAGAACCACACGA 60.301 57.895 20.43 0.00 0.00 4.35
1471 1832 2.661566 CGCTGCAGAGAACCACACG 61.662 63.158 20.43 3.82 0.00 4.49
1472 1833 1.287730 CTCGCTGCAGAGAACCACAC 61.288 60.000 20.95 0.00 40.57 3.82
1473 1834 1.005748 CTCGCTGCAGAGAACCACA 60.006 57.895 20.95 0.00 40.57 4.17
1651 2012 3.455910 TGGAGATGGTTCGATCCTTGATT 59.544 43.478 13.55 0.00 32.79 2.57
1811 2176 1.136057 GTGGTTAGTAAGTTGCAGCGC 60.136 52.381 0.00 0.00 0.00 5.92
1812 2177 1.126113 CGTGGTTAGTAAGTTGCAGCG 59.874 52.381 0.00 0.00 0.00 5.18
1813 2178 1.463444 CCGTGGTTAGTAAGTTGCAGC 59.537 52.381 0.00 0.00 0.00 5.25
1814 2179 2.762745 ACCGTGGTTAGTAAGTTGCAG 58.237 47.619 0.00 0.00 0.00 4.41
1815 2180 2.914695 ACCGTGGTTAGTAAGTTGCA 57.085 45.000 0.00 0.00 0.00 4.08
1856 2221 1.523258 GCGATCATCTGCCAGCAGT 60.523 57.895 18.61 4.44 43.96 4.40
2061 2426 2.599973 GGACTTGCGCAAATTTATGCTG 59.400 45.455 25.01 11.34 44.21 4.41
2142 2507 2.244252 ACGGAGGGAGTAGTTCATACCT 59.756 50.000 0.00 0.00 34.67 3.08
2149 2514 2.019807 TTGGAACGGAGGGAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
2152 2517 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2153 2518 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2154 2519 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2155 2520 4.523083 CAATCTATTTTGGAACGGAGGGA 58.477 43.478 0.00 0.00 0.00 4.20
2156 2521 4.900635 CAATCTATTTTGGAACGGAGGG 57.099 45.455 0.00 0.00 0.00 4.30
2165 2530 4.523083 TCCTCCGTTCCAATCTATTTTGG 58.477 43.478 0.00 0.00 46.28 3.28
2166 2531 5.648092 ACTTCCTCCGTTCCAATCTATTTTG 59.352 40.000 0.00 0.00 0.00 2.44
2167 2532 5.816682 ACTTCCTCCGTTCCAATCTATTTT 58.183 37.500 0.00 0.00 0.00 1.82
2168 2533 5.437191 ACTTCCTCCGTTCCAATCTATTT 57.563 39.130 0.00 0.00 0.00 1.40
2169 2534 6.099845 ACATACTTCCTCCGTTCCAATCTATT 59.900 38.462 0.00 0.00 0.00 1.73
2170 2535 5.602978 ACATACTTCCTCCGTTCCAATCTAT 59.397 40.000 0.00 0.00 0.00 1.98
2171 2536 4.960469 ACATACTTCCTCCGTTCCAATCTA 59.040 41.667 0.00 0.00 0.00 1.98
2172 2537 3.775316 ACATACTTCCTCCGTTCCAATCT 59.225 43.478 0.00 0.00 0.00 2.40
2173 2538 4.138487 ACATACTTCCTCCGTTCCAATC 57.862 45.455 0.00 0.00 0.00 2.67
2174 2539 4.715297 AGTACATACTTCCTCCGTTCCAAT 59.285 41.667 0.00 0.00 31.13 3.16
2175 2540 4.091549 AGTACATACTTCCTCCGTTCCAA 58.908 43.478 0.00 0.00 31.13 3.53
2176 2541 3.705051 AGTACATACTTCCTCCGTTCCA 58.295 45.455 0.00 0.00 31.13 3.53
2177 2542 4.886489 ACTAGTACATACTTCCTCCGTTCC 59.114 45.833 0.00 0.00 37.73 3.62
2178 2543 6.765512 ACTACTAGTACATACTTCCTCCGTTC 59.234 42.308 0.00 0.00 37.73 3.95
2179 2544 6.657875 ACTACTAGTACATACTTCCTCCGTT 58.342 40.000 0.00 0.00 37.73 4.44
2180 2545 6.245890 ACTACTAGTACATACTTCCTCCGT 57.754 41.667 0.00 0.00 37.73 4.69
2197 2562 7.404671 TGCAGTGATCAGAAATGTACTACTA 57.595 36.000 0.00 0.00 0.00 1.82
2227 2592 3.495331 ACGGATAGAGCAGTGATCATCT 58.505 45.455 11.60 0.00 0.00 2.90
2267 2632 1.662026 GCCTTTACCTGTTTTCGTGCG 60.662 52.381 0.00 0.00 0.00 5.34
2394 2759 0.531974 GTCAGGGTTCTTGCACACGA 60.532 55.000 0.00 0.00 0.00 4.35
2419 2784 0.320421 GCACGCTGTCCCAGTAGAAA 60.320 55.000 0.00 0.00 33.43 2.52
2548 2913 1.157257 TGCTTGCATACATACGCCCG 61.157 55.000 0.00 0.00 0.00 6.13
2555 2920 6.813649 CCTAACTACGATATGCTTGCATACAT 59.186 38.462 16.29 4.23 0.00 2.29
2564 2929 4.220724 TCCCAACCTAACTACGATATGCT 58.779 43.478 0.00 0.00 0.00 3.79
2669 3064 7.935338 AAAGTGCAATAACATTTCAGAACAG 57.065 32.000 0.00 0.00 0.00 3.16
2743 3147 6.238157 GGTGTTATGTTGAGTTGTAACGTTGA 60.238 38.462 11.99 0.00 31.42 3.18
2770 3174 8.091449 TCTTGCCAGAGTTTTTCTTTTGTTTTA 58.909 29.630 0.00 0.00 32.41 1.52
2775 3186 7.202526 TGTATCTTGCCAGAGTTTTTCTTTTG 58.797 34.615 0.00 0.00 32.41 2.44
2789 3200 1.141657 GGGCTCTCATGTATCTTGCCA 59.858 52.381 0.00 0.00 40.51 4.92
2839 3250 2.168521 TGGCTCCTATGTCTTGCTGTAC 59.831 50.000 0.00 0.00 0.00 2.90
2840 3251 2.466846 TGGCTCCTATGTCTTGCTGTA 58.533 47.619 0.00 0.00 0.00 2.74
2842 3253 2.158856 TGATGGCTCCTATGTCTTGCTG 60.159 50.000 0.00 0.00 0.00 4.41
2843 3254 2.121948 TGATGGCTCCTATGTCTTGCT 58.878 47.619 0.00 0.00 0.00 3.91
2844 3255 2.627515 TGATGGCTCCTATGTCTTGC 57.372 50.000 0.00 0.00 0.00 4.01
2860 3271 4.220693 TGGTCTTCCGATCATGTTTGAT 57.779 40.909 0.00 0.00 45.39 2.57
2884 3295 0.110010 GAGTTGGCTTTCTTCGCAGC 60.110 55.000 0.00 0.00 35.07 5.25
2949 3360 1.749638 TTTTGTTGGACGCACGGGT 60.750 52.632 0.00 0.00 0.00 5.28
2952 3363 0.911184 GTTGTTTTGTTGGACGCACG 59.089 50.000 0.00 0.00 0.00 5.34
2979 3390 1.228583 TCCTATCGGCGATGGAGCT 60.229 57.895 31.14 9.26 37.29 4.09
3038 3449 0.601057 TGAGCACTCCATCGTTCGAA 59.399 50.000 0.00 0.00 0.00 3.71
3065 3477 1.550524 ACTAACCTTCATCTGCGCTCA 59.449 47.619 9.73 0.00 0.00 4.26
3077 3489 3.118038 TCTGTTGTCTTGGCACTAACCTT 60.118 43.478 0.00 0.00 0.00 3.50
3079 3491 2.808543 CTCTGTTGTCTTGGCACTAACC 59.191 50.000 0.00 0.00 0.00 2.85
3081 3493 2.810400 GCCTCTGTTGTCTTGGCACTAA 60.810 50.000 0.00 0.00 42.79 2.24
3110 3522 1.202758 TCGGTGAGGTGATTGTGCTTT 60.203 47.619 0.00 0.00 0.00 3.51
3119 3531 0.892358 AGCTACGTTCGGTGAGGTGA 60.892 55.000 0.00 0.00 0.00 4.02
3141 3553 0.039256 CAACAACAATGCACTCCCGG 60.039 55.000 0.00 0.00 0.00 5.73
3143 3555 2.863704 GCTTCAACAACAATGCACTCCC 60.864 50.000 0.00 0.00 0.00 4.30
3144 3556 2.035066 AGCTTCAACAACAATGCACTCC 59.965 45.455 0.00 0.00 0.00 3.85
3152 3564 1.403679 CGGTCCAAGCTTCAACAACAA 59.596 47.619 0.00 0.00 0.00 2.83
3153 3565 1.021202 CGGTCCAAGCTTCAACAACA 58.979 50.000 0.00 0.00 0.00 3.33
3156 3568 0.179234 TGTCGGTCCAAGCTTCAACA 59.821 50.000 0.00 0.00 0.00 3.33
3180 3593 2.237393 AGATGGCATCTTCTTCTCGC 57.763 50.000 24.01 0.00 35.76 5.03
3191 3604 5.150715 TGAGGTGAGTTCTATAGATGGCAT 58.849 41.667 0.00 0.00 0.00 4.40
3220 3634 3.190878 CAAGGTCGCATCTTGCCC 58.809 61.111 0.00 0.00 41.12 5.36
3230 3644 1.203287 TCTGTCTCATGAGCAAGGTCG 59.797 52.381 18.36 7.27 0.00 4.79
3320 3746 4.898268 TCCCCTATACTTGTGGGTTATCA 58.102 43.478 0.00 0.00 39.31 2.15
3321 3747 5.546499 TGATCCCCTATACTTGTGGGTTATC 59.454 44.000 0.00 0.00 39.31 1.75
3322 3748 5.482580 TGATCCCCTATACTTGTGGGTTAT 58.517 41.667 0.00 0.00 39.31 1.89
3323 3749 4.898268 TGATCCCCTATACTTGTGGGTTA 58.102 43.478 0.00 0.00 39.31 2.85
3324 3750 3.743132 TGATCCCCTATACTTGTGGGTT 58.257 45.455 0.00 0.00 39.31 4.11
3325 3751 3.431411 TGATCCCCTATACTTGTGGGT 57.569 47.619 0.00 0.00 39.31 4.51
3326 3752 5.072741 CAATTGATCCCCTATACTTGTGGG 58.927 45.833 0.00 0.00 40.59 4.61
3327 3753 5.694995 ACAATTGATCCCCTATACTTGTGG 58.305 41.667 13.59 0.00 0.00 4.17
3328 3754 6.428159 GCTACAATTGATCCCCTATACTTGTG 59.572 42.308 13.59 0.00 0.00 3.33
3329 3755 6.465894 GGCTACAATTGATCCCCTATACTTGT 60.466 42.308 13.59 0.00 0.00 3.16
3330 3756 5.940470 GGCTACAATTGATCCCCTATACTTG 59.060 44.000 13.59 0.00 0.00 3.16
3331 3757 5.852250 AGGCTACAATTGATCCCCTATACTT 59.148 40.000 13.59 0.00 0.00 2.24
3332 3758 5.415961 AGGCTACAATTGATCCCCTATACT 58.584 41.667 13.59 0.00 0.00 2.12
3333 3759 5.763876 AGGCTACAATTGATCCCCTATAC 57.236 43.478 13.59 0.00 0.00 1.47
3334 3760 6.562608 AGAAAGGCTACAATTGATCCCCTATA 59.437 38.462 13.59 0.00 0.00 1.31
3335 3761 5.373854 AGAAAGGCTACAATTGATCCCCTAT 59.626 40.000 13.59 0.00 0.00 2.57
3336 3762 4.726825 AGAAAGGCTACAATTGATCCCCTA 59.273 41.667 13.59 0.00 0.00 3.53
3337 3763 3.529319 AGAAAGGCTACAATTGATCCCCT 59.471 43.478 13.59 8.92 0.00 4.79
3338 3764 3.885901 GAGAAAGGCTACAATTGATCCCC 59.114 47.826 13.59 6.75 0.00 4.81
3339 3765 3.561725 CGAGAAAGGCTACAATTGATCCC 59.438 47.826 13.59 8.53 0.00 3.85
3340 3766 4.442706 TCGAGAAAGGCTACAATTGATCC 58.557 43.478 13.59 9.59 0.00 3.36
3341 3767 7.439655 ACTTATCGAGAAAGGCTACAATTGATC 59.560 37.037 13.59 0.17 0.00 2.92
3342 3768 7.275920 ACTTATCGAGAAAGGCTACAATTGAT 58.724 34.615 13.59 0.00 0.00 2.57
3343 3769 6.640518 ACTTATCGAGAAAGGCTACAATTGA 58.359 36.000 13.59 0.00 0.00 2.57
3344 3770 6.910536 ACTTATCGAGAAAGGCTACAATTG 57.089 37.500 3.24 3.24 0.00 2.32
3345 3771 8.475639 TCTTACTTATCGAGAAAGGCTACAATT 58.524 33.333 13.20 0.00 0.00 2.32
3346 3772 8.008513 TCTTACTTATCGAGAAAGGCTACAAT 57.991 34.615 13.20 0.00 0.00 2.71
3347 3773 7.122353 ACTCTTACTTATCGAGAAAGGCTACAA 59.878 37.037 13.20 1.64 0.00 2.41
3348 3774 6.602406 ACTCTTACTTATCGAGAAAGGCTACA 59.398 38.462 13.20 0.00 0.00 2.74
3349 3775 6.913673 CACTCTTACTTATCGAGAAAGGCTAC 59.086 42.308 13.20 0.00 0.00 3.58
3350 3776 6.602406 ACACTCTTACTTATCGAGAAAGGCTA 59.398 38.462 13.20 0.00 0.00 3.93
3351 3777 5.419471 ACACTCTTACTTATCGAGAAAGGCT 59.581 40.000 13.20 0.00 0.00 4.58
3352 3778 5.652518 ACACTCTTACTTATCGAGAAAGGC 58.347 41.667 13.20 0.00 0.00 4.35
3353 3779 5.966503 CGACACTCTTACTTATCGAGAAAGG 59.033 44.000 13.20 0.00 0.00 3.11
3354 3780 6.773080 TCGACACTCTTACTTATCGAGAAAG 58.227 40.000 8.38 8.38 33.95 2.62
3355 3781 6.732531 TCGACACTCTTACTTATCGAGAAA 57.267 37.500 0.00 0.00 33.95 2.52
3356 3782 6.402983 GGTTCGACACTCTTACTTATCGAGAA 60.403 42.308 0.00 0.00 39.49 2.87
3357 3783 5.064452 GGTTCGACACTCTTACTTATCGAGA 59.936 44.000 0.00 0.00 39.49 4.04
3358 3784 5.264712 GGTTCGACACTCTTACTTATCGAG 58.735 45.833 0.00 0.00 39.49 4.04
3359 3785 4.095483 GGGTTCGACACTCTTACTTATCGA 59.905 45.833 0.00 0.00 36.85 3.59
3360 3786 4.142534 TGGGTTCGACACTCTTACTTATCG 60.143 45.833 0.00 0.00 0.00 2.92
3361 3787 5.320549 TGGGTTCGACACTCTTACTTATC 57.679 43.478 0.00 0.00 0.00 1.75
3362 3788 5.476614 GTTGGGTTCGACACTCTTACTTAT 58.523 41.667 0.00 0.00 0.00 1.73
3363 3789 4.557296 CGTTGGGTTCGACACTCTTACTTA 60.557 45.833 0.00 0.00 0.00 2.24
3364 3790 3.725490 GTTGGGTTCGACACTCTTACTT 58.275 45.455 0.00 0.00 0.00 2.24
3365 3791 2.288030 CGTTGGGTTCGACACTCTTACT 60.288 50.000 0.00 0.00 0.00 2.24
3366 3792 2.056577 CGTTGGGTTCGACACTCTTAC 58.943 52.381 0.00 0.00 0.00 2.34
3367 3793 1.955778 TCGTTGGGTTCGACACTCTTA 59.044 47.619 0.00 0.00 32.30 2.10
3368 3794 0.748450 TCGTTGGGTTCGACACTCTT 59.252 50.000 0.00 0.00 32.30 2.85
3369 3795 0.314302 CTCGTTGGGTTCGACACTCT 59.686 55.000 0.00 0.00 33.71 3.24
3370 3796 0.313043 TCTCGTTGGGTTCGACACTC 59.687 55.000 0.00 0.00 33.71 3.51
3371 3797 0.748450 TTCTCGTTGGGTTCGACACT 59.252 50.000 0.00 0.00 33.71 3.55
3372 3798 1.137513 CTTCTCGTTGGGTTCGACAC 58.862 55.000 0.00 0.00 33.71 3.67
3373 3799 0.748450 ACTTCTCGTTGGGTTCGACA 59.252 50.000 0.00 0.00 33.71 4.35
3374 3800 1.861971 AACTTCTCGTTGGGTTCGAC 58.138 50.000 0.00 0.00 33.72 4.20
3375 3801 3.731652 TTAACTTCTCGTTGGGTTCGA 57.268 42.857 0.00 0.00 37.05 3.71
3376 3802 3.185797 CCTTTAACTTCTCGTTGGGTTCG 59.814 47.826 0.00 0.00 37.05 3.95
3377 3803 4.132336 ACCTTTAACTTCTCGTTGGGTTC 58.868 43.478 0.00 0.00 37.05 3.62
3378 3804 4.160642 ACCTTTAACTTCTCGTTGGGTT 57.839 40.909 0.00 0.00 37.05 4.11
3379 3805 3.851458 ACCTTTAACTTCTCGTTGGGT 57.149 42.857 0.00 0.00 37.05 4.51
3380 3806 5.143376 TCTACCTTTAACTTCTCGTTGGG 57.857 43.478 0.00 0.00 37.05 4.12
3381 3807 7.668525 AATTCTACCTTTAACTTCTCGTTGG 57.331 36.000 0.00 0.00 37.05 3.77
3427 3853 3.629058 CATAGAGTTGTATCGGTGGTCG 58.371 50.000 0.00 0.00 40.90 4.79
3428 3854 3.381949 GCATAGAGTTGTATCGGTGGTC 58.618 50.000 0.00 0.00 0.00 4.02
3429 3855 2.223735 CGCATAGAGTTGTATCGGTGGT 60.224 50.000 0.00 0.00 0.00 4.16
3430 3856 2.394708 CGCATAGAGTTGTATCGGTGG 58.605 52.381 0.00 0.00 0.00 4.61
3431 3857 1.787155 GCGCATAGAGTTGTATCGGTG 59.213 52.381 0.30 0.00 0.00 4.94
3432 3858 1.407618 TGCGCATAGAGTTGTATCGGT 59.592 47.619 5.66 0.00 0.00 4.69
3433 3859 1.787155 GTGCGCATAGAGTTGTATCGG 59.213 52.381 15.91 0.00 0.00 4.18
3434 3860 2.732366 AGTGCGCATAGAGTTGTATCG 58.268 47.619 15.91 0.00 0.00 2.92
3435 3861 5.331607 CGTTAAGTGCGCATAGAGTTGTATC 60.332 44.000 15.91 0.00 0.00 2.24
3436 3862 4.503007 CGTTAAGTGCGCATAGAGTTGTAT 59.497 41.667 15.91 0.00 0.00 2.29
3437 3863 3.855379 CGTTAAGTGCGCATAGAGTTGTA 59.145 43.478 15.91 0.00 0.00 2.41
3438 3864 2.666508 CGTTAAGTGCGCATAGAGTTGT 59.333 45.455 15.91 0.00 0.00 3.32
3439 3865 2.666508 ACGTTAAGTGCGCATAGAGTTG 59.333 45.455 15.91 3.96 0.00 3.16
3440 3866 2.955614 ACGTTAAGTGCGCATAGAGTT 58.044 42.857 15.91 1.39 0.00 3.01
3441 3867 2.649331 ACGTTAAGTGCGCATAGAGT 57.351 45.000 15.91 6.88 0.00 3.24
3442 3868 2.029244 CCAACGTTAAGTGCGCATAGAG 59.971 50.000 15.91 6.18 0.00 2.43
3443 3869 1.996898 CCAACGTTAAGTGCGCATAGA 59.003 47.619 15.91 0.00 0.00 1.98
3444 3870 1.529010 GCCAACGTTAAGTGCGCATAG 60.529 52.381 15.91 4.22 0.00 2.23
3445 3871 0.444651 GCCAACGTTAAGTGCGCATA 59.555 50.000 15.91 0.00 0.00 3.14
3446 3872 1.209127 GCCAACGTTAAGTGCGCAT 59.791 52.632 15.91 0.00 0.00 4.73
3447 3873 1.440938 AAGCCAACGTTAAGTGCGCA 61.441 50.000 5.66 5.66 32.02 6.09
3448 3874 0.317519 AAAGCCAACGTTAAGTGCGC 60.318 50.000 0.00 0.00 0.00 6.09
3449 3875 2.567067 GTAAAGCCAACGTTAAGTGCG 58.433 47.619 0.00 0.00 0.00 5.34
3450 3876 2.551032 AGGTAAAGCCAACGTTAAGTGC 59.449 45.455 0.00 1.61 40.61 4.40
3451 3877 5.232463 TCTAGGTAAAGCCAACGTTAAGTG 58.768 41.667 0.00 0.00 40.61 3.16
3452 3878 5.473066 TCTAGGTAAAGCCAACGTTAAGT 57.527 39.130 0.00 0.00 40.61 2.24
3453 3879 5.697633 TGTTCTAGGTAAAGCCAACGTTAAG 59.302 40.000 0.00 0.00 40.61 1.85
3454 3880 5.609423 TGTTCTAGGTAAAGCCAACGTTAA 58.391 37.500 0.00 0.00 40.61 2.01
3455 3881 5.212532 TGTTCTAGGTAAAGCCAACGTTA 57.787 39.130 0.00 0.00 40.61 3.18
3456 3882 4.075963 TGTTCTAGGTAAAGCCAACGTT 57.924 40.909 0.00 0.00 40.61 3.99
3457 3883 3.756933 TGTTCTAGGTAAAGCCAACGT 57.243 42.857 0.00 0.00 40.61 3.99
3458 3884 4.062991 ACTTGTTCTAGGTAAAGCCAACG 58.937 43.478 0.00 0.00 40.61 4.10
3459 3885 6.877322 TCATACTTGTTCTAGGTAAAGCCAAC 59.123 38.462 0.00 0.00 40.61 3.77
3460 3886 7.011499 TCATACTTGTTCTAGGTAAAGCCAA 57.989 36.000 0.00 0.00 40.61 4.52
3461 3887 6.614694 TCATACTTGTTCTAGGTAAAGCCA 57.385 37.500 0.00 0.00 40.61 4.75
3462 3888 7.606839 AGTTTCATACTTGTTCTAGGTAAAGCC 59.393 37.037 0.00 0.00 31.29 4.35
3463 3889 8.549338 AGTTTCATACTTGTTCTAGGTAAAGC 57.451 34.615 0.00 0.00 31.29 3.51
3475 3901 9.569122 ACACCTACAAAATAGTTTCATACTTGT 57.431 29.630 0.00 0.00 38.33 3.16
3476 3902 9.825972 CACACCTACAAAATAGTTTCATACTTG 57.174 33.333 0.00 0.00 38.33 3.16
3477 3903 9.787435 TCACACCTACAAAATAGTTTCATACTT 57.213 29.630 0.00 0.00 38.33 2.24
3478 3904 9.959721 ATCACACCTACAAAATAGTTTCATACT 57.040 29.630 0.00 0.00 41.04 2.12
3489 3915 9.975218 AAACCTATTCTATCACACCTACAAAAT 57.025 29.630 0.00 0.00 0.00 1.82
3490 3916 9.226606 CAAACCTATTCTATCACACCTACAAAA 57.773 33.333 0.00 0.00 0.00 2.44
3491 3917 7.335924 GCAAACCTATTCTATCACACCTACAAA 59.664 37.037 0.00 0.00 0.00 2.83
3492 3918 6.821665 GCAAACCTATTCTATCACACCTACAA 59.178 38.462 0.00 0.00 0.00 2.41
3493 3919 6.070481 TGCAAACCTATTCTATCACACCTACA 60.070 38.462 0.00 0.00 0.00 2.74
3494 3920 6.346096 TGCAAACCTATTCTATCACACCTAC 58.654 40.000 0.00 0.00 0.00 3.18
3495 3921 6.553953 TGCAAACCTATTCTATCACACCTA 57.446 37.500 0.00 0.00 0.00 3.08
3496 3922 5.435686 TGCAAACCTATTCTATCACACCT 57.564 39.130 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.