Multiple sequence alignment - TraesCS1B01G160900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G160900 chr1B 100.000 6827 0 0 1 6827 277759658 277766484 0.000000e+00 12608.0
1 TraesCS1B01G160900 chr1B 87.464 351 41 3 2258 2605 629503371 629503721 1.070000e-107 401.0
2 TraesCS1B01G160900 chr1B 86.686 353 41 6 2252 2601 424998351 424998002 2.990000e-103 387.0
3 TraesCS1B01G160900 chr1B 92.857 84 5 1 4592 4674 277764161 277764244 3.340000e-23 121.0
4 TraesCS1B01G160900 chr1B 92.857 84 5 1 4504 4587 277764249 277764331 3.340000e-23 121.0
5 TraesCS1B01G160900 chr1A 93.914 3171 111 27 3082 6185 248424127 248427282 0.000000e+00 4711.0
6 TraesCS1B01G160900 chr1A 93.927 1663 57 6 640 2260 248421917 248423577 0.000000e+00 2471.0
7 TraesCS1B01G160900 chr1A 94.900 549 20 4 2592 3132 248423576 248424124 0.000000e+00 852.0
8 TraesCS1B01G160900 chr1A 86.441 472 37 11 6356 6825 248429009 248429455 6.150000e-135 492.0
9 TraesCS1B01G160900 chr1A 87.464 343 39 3 2257 2597 200249268 200248928 6.420000e-105 392.0
10 TraesCS1B01G160900 chr1A 95.798 119 5 0 3084 3202 507540076 507539958 6.990000e-45 193.0
11 TraesCS1B01G160900 chr1A 90.909 88 5 1 4592 4676 248425548 248425635 1.560000e-21 115.0
12 TraesCS1B01G160900 chr1A 100.000 35 0 0 614 648 248421878 248421912 1.590000e-06 65.8
13 TraesCS1B01G160900 chr1D 93.811 3183 108 30 3082 6185 197732836 197736008 0.000000e+00 4704.0
14 TraesCS1B01G160900 chr1D 93.287 1713 56 13 598 2260 197725998 197727701 0.000000e+00 2471.0
15 TraesCS1B01G160900 chr1D 84.965 572 48 16 6257 6825 197736428 197736964 4.660000e-151 545.0
16 TraesCS1B01G160900 chr1D 81.884 414 55 15 158 565 470418788 470419187 1.420000e-86 331.0
17 TraesCS1B01G160900 chr1D 78.685 441 62 22 1 428 454301961 454302382 1.460000e-66 265.0
18 TraesCS1B01G160900 chr1D 83.039 283 28 13 5028 5305 47951916 47951649 8.850000e-59 239.0
19 TraesCS1B01G160900 chr1D 81.967 305 27 12 5335 5639 69275542 69275818 4.120000e-57 233.0
20 TraesCS1B01G160900 chr1D 90.845 142 10 1 5497 5638 69273245 69273383 3.250000e-43 187.0
21 TraesCS1B01G160900 chr1D 89.855 138 11 1 5497 5634 69338799 69338933 2.530000e-39 174.0
22 TraesCS1B01G160900 chr1D 86.029 136 12 5 4403 4532 69265713 69265847 9.230000e-29 139.0
23 TraesCS1B01G160900 chr1D 93.182 88 5 1 4504 4591 197734359 197734445 2.000000e-25 128.0
24 TraesCS1B01G160900 chr1D 89.655 87 5 3 4592 4674 197734268 197734354 2.600000e-19 108.0
25 TraesCS1B01G160900 chr7B 90.724 442 38 2 2691 3132 153435849 153436287 2.740000e-163 586.0
26 TraesCS1B01G160900 chr7B 76.632 582 98 26 1 568 599418988 599418431 3.120000e-73 287.0
27 TraesCS1B01G160900 chr3D 84.471 586 73 9 1 581 528626411 528625839 4.620000e-156 562.0
28 TraesCS1B01G160900 chr2A 89.238 446 42 6 2692 3135 438722603 438722162 2.780000e-153 553.0
29 TraesCS1B01G160900 chr2A 87.535 353 38 6 2249 2597 12333707 12333357 2.970000e-108 403.0
30 TraesCS1B01G160900 chr2A 87.730 326 37 1 5308 5633 646841093 646841415 1.800000e-100 377.0
31 TraesCS1B01G160900 chr2A 78.739 555 100 10 30 579 227346393 227345852 8.420000e-94 355.0
32 TraesCS1B01G160900 chr2A 95.041 121 6 0 3084 3204 419091137 419091257 2.510000e-44 191.0
33 TraesCS1B01G160900 chr2A 91.139 79 5 1 5227 5305 646840988 646841064 9.360000e-19 106.0
34 TraesCS1B01G160900 chr4D 97.531 324 5 2 2274 2594 473831032 473831355 1.000000e-152 551.0
35 TraesCS1B01G160900 chr2D 87.668 446 48 7 2692 3135 331613573 331613133 4.720000e-141 512.0
36 TraesCS1B01G160900 chr2D 81.678 584 86 14 1 581 501069176 501068611 3.730000e-127 466.0
37 TraesCS1B01G160900 chr7D 87.557 442 50 5 2691 3132 184184795 184185231 2.200000e-139 507.0
38 TraesCS1B01G160900 chr7D 83.951 486 60 10 5000 5469 46517697 46518180 3.760000e-122 449.0
39 TraesCS1B01G160900 chr7D 78.351 582 91 20 1 565 63864045 63864608 1.820000e-90 344.0
40 TraesCS1B01G160900 chr7A 89.136 405 41 2 2731 3135 186534118 186533717 1.020000e-137 501.0
41 TraesCS1B01G160900 chr7A 83.168 505 51 18 4997 5469 48291955 48292457 1.360000e-116 431.0
42 TraesCS1B01G160900 chr7A 78.793 547 92 16 11 554 510827934 510827409 5.070000e-91 346.0
43 TraesCS1B01G160900 chr7A 80.795 453 47 20 5028 5443 630486471 630486022 1.100000e-82 318.0
44 TraesCS1B01G160900 chr7A 89.552 134 14 0 5308 5441 109239929 109240062 3.270000e-38 171.0
45 TraesCS1B01G160900 chr5A 83.953 511 72 9 2698 3203 438621303 438621808 1.330000e-131 481.0
46 TraesCS1B01G160900 chr5A 83.333 516 77 8 2689 3202 696736844 696736336 1.040000e-127 468.0
47 TraesCS1B01G160900 chr5A 82.746 539 66 14 2690 3204 635612961 635612426 8.070000e-124 455.0
48 TraesCS1B01G160900 chr5A 87.536 345 41 1 2259 2601 574178236 574177892 1.380000e-106 398.0
49 TraesCS1B01G160900 chr5A 87.353 340 41 1 2258 2595 167474598 167474259 8.300000e-104 388.0
50 TraesCS1B01G160900 chr5A 95.041 121 6 0 3084 3204 369561982 369561862 2.510000e-44 191.0
51 TraesCS1B01G160900 chr5A 92.481 133 8 2 3084 3215 210842787 210842656 9.040000e-44 189.0
52 TraesCS1B01G160900 chr6A 86.486 444 50 8 2694 3132 65858608 65859046 4.790000e-131 479.0
53 TraesCS1B01G160900 chr4A 85.084 476 39 15 4123 4588 574730998 574731451 2.240000e-124 457.0
54 TraesCS1B01G160900 chr4A 83.000 500 45 17 5007 5470 659435285 659435780 3.810000e-112 416.0
55 TraesCS1B01G160900 chr4A 82.600 500 48 17 5007 5470 660084664 660085160 8.240000e-109 405.0
56 TraesCS1B01G160900 chr4A 87.834 337 39 2 2259 2593 457793647 457793983 1.780000e-105 394.0
57 TraesCS1B01G160900 chr4A 81.651 327 24 14 5308 5634 574732153 574732443 8.850000e-59 239.0
58 TraesCS1B01G160900 chr5B 83.570 493 54 13 4997 5468 635198389 635197903 2.920000e-118 436.0
59 TraesCS1B01G160900 chr5D 87.906 339 39 1 2257 2593 231004884 231004546 1.380000e-106 398.0
60 TraesCS1B01G160900 chr3B 80.380 474 76 9 1 470 223275 222815 1.820000e-90 344.0
61 TraesCS1B01G160900 chr2B 80.135 297 38 13 279 566 72724421 72724137 1.160000e-47 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G160900 chr1B 277759658 277766484 6826 False 4283.333333 12608 95.23800 1 6827 3 chr1B.!!$F2 6826
1 TraesCS1B01G160900 chr1A 248421878 248429455 7577 False 1451.133333 4711 93.34850 614 6825 6 chr1A.!!$F1 6211
2 TraesCS1B01G160900 chr1D 197725998 197727701 1703 False 2471.000000 2471 93.28700 598 2260 1 chr1D.!!$F3 1662
3 TraesCS1B01G160900 chr1D 197732836 197736964 4128 False 1371.250000 4704 90.40325 3082 6825 4 chr1D.!!$F7 3743
4 TraesCS1B01G160900 chr1D 69273245 69275818 2573 False 210.000000 233 86.40600 5335 5639 2 chr1D.!!$F6 304
5 TraesCS1B01G160900 chr7B 599418431 599418988 557 True 287.000000 287 76.63200 1 568 1 chr7B.!!$R1 567
6 TraesCS1B01G160900 chr3D 528625839 528626411 572 True 562.000000 562 84.47100 1 581 1 chr3D.!!$R1 580
7 TraesCS1B01G160900 chr2A 227345852 227346393 541 True 355.000000 355 78.73900 30 579 1 chr2A.!!$R2 549
8 TraesCS1B01G160900 chr2D 501068611 501069176 565 True 466.000000 466 81.67800 1 581 1 chr2D.!!$R2 580
9 TraesCS1B01G160900 chr7D 63864045 63864608 563 False 344.000000 344 78.35100 1 565 1 chr7D.!!$F2 564
10 TraesCS1B01G160900 chr7A 48291955 48292457 502 False 431.000000 431 83.16800 4997 5469 1 chr7A.!!$F1 472
11 TraesCS1B01G160900 chr7A 510827409 510827934 525 True 346.000000 346 78.79300 11 554 1 chr7A.!!$R2 543
12 TraesCS1B01G160900 chr5A 438621303 438621808 505 False 481.000000 481 83.95300 2698 3203 1 chr5A.!!$F1 505
13 TraesCS1B01G160900 chr5A 696736336 696736844 508 True 468.000000 468 83.33300 2689 3202 1 chr5A.!!$R6 513
14 TraesCS1B01G160900 chr5A 635612426 635612961 535 True 455.000000 455 82.74600 2690 3204 1 chr5A.!!$R5 514
15 TraesCS1B01G160900 chr4A 574730998 574732443 1445 False 348.000000 457 83.36750 4123 5634 2 chr4A.!!$F4 1511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 636 0.461548 TGGAGATGCTCTTAGCCACG 59.538 55.000 0.00 0.00 41.51 4.94 F
1257 1331 0.452184 TTTGTCTTGCGCGGTCAAAA 59.548 45.000 8.83 7.82 0.00 2.44 F
1620 1711 1.133792 ACCGCATATTCCTCCCTTTGG 60.134 52.381 0.00 0.00 0.00 3.28 F
2317 2426 0.321210 CACGGTGACCAAGGCACATA 60.321 55.000 0.74 0.00 37.99 2.29 F
2318 2427 0.398696 ACGGTGACCAAGGCACATAA 59.601 50.000 1.11 0.00 37.99 1.90 F
2351 2460 0.741221 AGGACGAAATCGCTCTTGGC 60.741 55.000 2.15 0.00 44.43 4.52 F
2505 2614 1.354101 TCTGGAGGGTTAAAAGCGGA 58.646 50.000 0.00 0.00 0.00 5.54 F
4016 4202 1.376553 GCTCCCTGCACTGTTCCTC 60.377 63.158 0.00 0.00 42.31 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2298 2407 0.321210 TATGTGCCTTGGTCACCGTG 60.321 55.000 10.19 0.00 33.71 4.94 R
2299 2408 0.398696 TTATGTGCCTTGGTCACCGT 59.601 50.000 10.19 4.32 33.71 4.83 R
2486 2595 1.354101 TCCGCTTTTAACCCTCCAGA 58.646 50.000 0.00 0.00 0.00 3.86 R
4004 4190 4.199310 GGCATAATTAGAGGAACAGTGCA 58.801 43.478 4.77 0.00 0.00 4.57 R
4061 4247 5.708948 CGTCAAATATGCAAAGGGAAAAGA 58.291 37.500 0.00 0.00 0.00 2.52 R
4274 4460 7.230510 AGCAAAGGTAACAGTTGAAACATATGA 59.769 33.333 10.38 0.00 36.30 2.15 R
4674 4872 1.978580 AGTCCCTGTTGGTCTAGTTGG 59.021 52.381 0.00 0.00 30.02 3.77 R
5846 6204 0.667792 GCGCGCCAAATTAACCCAAA 60.668 50.000 23.24 0.00 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 94 2.042104 TCTTCTTTTCGGACGTCGTC 57.958 50.000 17.16 17.16 40.32 4.20
85 95 0.701303 CTTCTTTTCGGACGTCGTCG 59.299 55.000 18.61 13.76 43.34 5.12
95 105 4.360027 CGTCGTCGTCGTCACCGT 62.360 66.667 3.67 0.00 38.33 4.83
100 110 2.738139 TCGTCGTCACCGTCGCTA 60.738 61.111 0.00 0.00 43.55 4.26
101 111 2.102438 TCGTCGTCACCGTCGCTAT 61.102 57.895 0.00 0.00 43.55 2.97
165 175 2.676471 GGCGCCATTTCACCACCT 60.676 61.111 24.80 0.00 0.00 4.00
319 341 2.675371 GTGTAGGGAGGGGTTGGC 59.325 66.667 0.00 0.00 0.00 4.52
390 417 3.744719 CGAAGGCAGGACGACCGA 61.745 66.667 0.00 0.00 41.83 4.69
414 443 2.075566 TCAGGGTGGCAGTTGGTCA 61.076 57.895 0.00 0.00 0.00 4.02
428 457 2.449525 GGTCACTCGCGCGCAAATA 61.450 57.895 32.61 12.08 0.00 1.40
440 469 1.202132 GCGCAAATATTCGCTGGACAA 60.202 47.619 12.77 0.00 46.92 3.18
473 502 1.404477 GCGCACCAAATACACAACAC 58.596 50.000 0.30 0.00 0.00 3.32
494 523 4.540153 CGATGCCGTTTCCCTCAT 57.460 55.556 0.00 0.00 0.00 2.90
519 548 1.601903 CTGAACCAACTTTACTGCGCA 59.398 47.619 10.98 10.98 0.00 6.09
530 559 4.153475 ACTTTACTGCGCACACGATTTTAT 59.847 37.500 5.66 0.00 43.93 1.40
541 570 4.273235 CACACGATTTTATCATGGCTGCTA 59.727 41.667 0.00 0.00 0.00 3.49
573 603 4.865761 GTCCCGCGCACGCTATGA 62.866 66.667 13.70 3.85 39.32 2.15
574 604 4.136511 TCCCGCGCACGCTATGAA 62.137 61.111 13.70 0.00 39.32 2.57
575 605 3.630148 CCCGCGCACGCTATGAAG 61.630 66.667 13.70 0.00 39.32 3.02
576 606 2.885644 CCGCGCACGCTATGAAGT 60.886 61.111 13.70 0.00 39.32 3.01
578 608 2.615618 GCGCACGCTATGAAGTCG 59.384 61.111 7.96 0.00 38.26 4.18
579 609 2.158959 GCGCACGCTATGAAGTCGT 61.159 57.895 7.96 0.00 36.40 4.34
580 610 1.683790 GCGCACGCTATGAAGTCGTT 61.684 55.000 7.96 0.00 34.65 3.85
582 612 1.068474 GCACGCTATGAAGTCGTTGT 58.932 50.000 0.00 0.00 34.65 3.32
584 614 2.058798 CACGCTATGAAGTCGTTGTGT 58.941 47.619 0.00 0.00 34.65 3.72
585 615 2.058798 ACGCTATGAAGTCGTTGTGTG 58.941 47.619 1.25 0.00 33.62 3.82
587 617 2.475111 CGCTATGAAGTCGTTGTGTGTT 59.525 45.455 0.00 0.00 0.00 3.32
588 618 3.661678 CGCTATGAAGTCGTTGTGTGTTG 60.662 47.826 0.00 0.00 0.00 3.33
589 619 3.363970 GCTATGAAGTCGTTGTGTGTTGG 60.364 47.826 0.00 0.00 0.00 3.77
590 620 2.388310 TGAAGTCGTTGTGTGTTGGA 57.612 45.000 0.00 0.00 0.00 3.53
592 622 2.093921 TGAAGTCGTTGTGTGTTGGAGA 60.094 45.455 0.00 0.00 0.00 3.71
593 623 2.910688 AGTCGTTGTGTGTTGGAGAT 57.089 45.000 0.00 0.00 0.00 2.75
594 624 2.483876 AGTCGTTGTGTGTTGGAGATG 58.516 47.619 0.00 0.00 0.00 2.90
595 625 1.069906 GTCGTTGTGTGTTGGAGATGC 60.070 52.381 0.00 0.00 0.00 3.91
596 626 1.202639 TCGTTGTGTGTTGGAGATGCT 60.203 47.619 0.00 0.00 0.00 3.79
600 630 4.065088 GTTGTGTGTTGGAGATGCTCTTA 58.935 43.478 0.00 0.00 0.00 2.10
601 631 3.930336 TGTGTGTTGGAGATGCTCTTAG 58.070 45.455 0.00 0.00 0.00 2.18
602 632 2.675348 GTGTGTTGGAGATGCTCTTAGC 59.325 50.000 0.00 0.00 42.82 3.09
603 633 2.284190 GTGTTGGAGATGCTCTTAGCC 58.716 52.381 0.00 0.00 41.51 3.93
604 634 1.908619 TGTTGGAGATGCTCTTAGCCA 59.091 47.619 0.00 0.00 41.51 4.75
605 635 2.284190 GTTGGAGATGCTCTTAGCCAC 58.716 52.381 0.00 0.00 41.51 5.01
606 636 0.461548 TGGAGATGCTCTTAGCCACG 59.538 55.000 0.00 0.00 41.51 4.94
609 639 1.135139 GAGATGCTCTTAGCCACGACA 59.865 52.381 0.00 0.00 41.51 4.35
685 738 4.692625 TCTCTCGCCAATTCAAAAAGAGAG 59.307 41.667 11.93 11.93 46.74 3.20
687 740 5.063204 TCTCGCCAATTCAAAAAGAGAGAA 58.937 37.500 0.00 0.00 30.47 2.87
688 741 5.180117 TCTCGCCAATTCAAAAAGAGAGAAG 59.820 40.000 0.00 0.00 30.47 2.85
689 742 5.063204 TCGCCAATTCAAAAAGAGAGAAGA 58.937 37.500 0.00 0.00 0.00 2.87
690 743 5.530915 TCGCCAATTCAAAAAGAGAGAAGAA 59.469 36.000 0.00 0.00 0.00 2.52
692 745 6.697019 CGCCAATTCAAAAAGAGAGAAGAAAA 59.303 34.615 0.00 0.00 0.00 2.29
1129 1201 4.810184 TTCCCCCGCCCCTACTCC 62.810 72.222 0.00 0.00 0.00 3.85
1152 1225 2.158004 CCCCTCCTATCCATCCCTGTAA 60.158 54.545 0.00 0.00 0.00 2.41
1157 1230 5.844516 CCTCCTATCCATCCCTGTAAAAGTA 59.155 44.000 0.00 0.00 0.00 2.24
1257 1331 0.452184 TTTGTCTTGCGCGGTCAAAA 59.548 45.000 8.83 7.82 0.00 2.44
1289 1363 2.954318 CTGCTGCTAAATACATGGCCTT 59.046 45.455 3.32 0.00 0.00 4.35
1476 1564 4.640771 AACCATGGAGTTCTGTATGTGT 57.359 40.909 21.47 0.00 0.00 3.72
1539 1627 3.701040 AGTTGCAACAACTCAATCCTGTT 59.299 39.130 30.11 2.33 33.62 3.16
1596 1687 5.179452 ACCTGTGCCTTCTTGTATATTGT 57.821 39.130 0.00 0.00 0.00 2.71
1610 1701 9.419297 TCTTGTATATTGTAGAACCGCATATTC 57.581 33.333 0.00 0.00 0.00 1.75
1616 1707 1.807814 AGAACCGCATATTCCTCCCT 58.192 50.000 0.00 0.00 0.00 4.20
1620 1711 1.133792 ACCGCATATTCCTCCCTTTGG 60.134 52.381 0.00 0.00 0.00 3.28
1861 1969 4.634443 ACTGCGGACCATTTTCACTTATAC 59.366 41.667 0.00 0.00 0.00 1.47
2236 2345 2.588989 CTCCCAGCCTTCCTCAGC 59.411 66.667 0.00 0.00 0.00 4.26
2260 2369 6.709643 CACTTCTGCAGCAGTTATGTAATAC 58.290 40.000 22.10 0.00 32.61 1.89
2261 2370 6.536582 CACTTCTGCAGCAGTTATGTAATACT 59.463 38.462 22.10 0.00 32.61 2.12
2262 2371 6.758886 ACTTCTGCAGCAGTTATGTAATACTC 59.241 38.462 22.10 0.00 32.61 2.59
2263 2372 5.601662 TCTGCAGCAGTTATGTAATACTCC 58.398 41.667 22.10 0.00 32.61 3.85
2264 2373 4.703897 TGCAGCAGTTATGTAATACTCCC 58.296 43.478 0.00 0.00 0.00 4.30
2265 2374 4.408921 TGCAGCAGTTATGTAATACTCCCT 59.591 41.667 0.00 0.00 0.00 4.20
2266 2375 4.991687 GCAGCAGTTATGTAATACTCCCTC 59.008 45.833 0.00 0.00 0.00 4.30
2267 2376 5.542779 CAGCAGTTATGTAATACTCCCTCC 58.457 45.833 0.00 0.00 0.00 4.30
2268 2377 5.070446 CAGCAGTTATGTAATACTCCCTCCA 59.930 44.000 0.00 0.00 0.00 3.86
2269 2378 5.846714 AGCAGTTATGTAATACTCCCTCCAT 59.153 40.000 0.00 0.00 0.00 3.41
2270 2379 6.330250 AGCAGTTATGTAATACTCCCTCCATT 59.670 38.462 0.00 0.00 0.00 3.16
2271 2380 6.651225 GCAGTTATGTAATACTCCCTCCATTC 59.349 42.308 0.00 0.00 0.00 2.67
2272 2381 7.162082 CAGTTATGTAATACTCCCTCCATTCC 58.838 42.308 0.00 0.00 0.00 3.01
2273 2382 7.016661 CAGTTATGTAATACTCCCTCCATTCCT 59.983 40.741 0.00 0.00 0.00 3.36
2274 2383 7.572861 AGTTATGTAATACTCCCTCCATTCCTT 59.427 37.037 0.00 0.00 0.00 3.36
2275 2384 6.848562 ATGTAATACTCCCTCCATTCCTTT 57.151 37.500 0.00 0.00 0.00 3.11
2276 2385 7.947782 ATGTAATACTCCCTCCATTCCTTTA 57.052 36.000 0.00 0.00 0.00 1.85
2277 2386 7.947782 TGTAATACTCCCTCCATTCCTTTAT 57.052 36.000 0.00 0.00 0.00 1.40
2278 2387 9.629649 ATGTAATACTCCCTCCATTCCTTTATA 57.370 33.333 0.00 0.00 0.00 0.98
2279 2388 9.629649 TGTAATACTCCCTCCATTCCTTTATAT 57.370 33.333 0.00 0.00 0.00 0.86
2283 2392 7.575499 ACTCCCTCCATTCCTTTATATAAGG 57.425 40.000 0.00 0.00 38.78 2.69
2284 2393 7.089566 ACTCCCTCCATTCCTTTATATAAGGT 58.910 38.462 4.13 0.00 38.55 3.50
2285 2394 7.017651 ACTCCCTCCATTCCTTTATATAAGGTG 59.982 40.741 4.13 0.00 38.55 4.00
2286 2395 6.855061 TCCCTCCATTCCTTTATATAAGGTGT 59.145 38.462 4.13 2.81 38.55 4.16
2287 2396 8.020253 TCCCTCCATTCCTTTATATAAGGTGTA 58.980 37.037 4.13 3.09 38.55 2.90
2288 2397 8.836735 CCCTCCATTCCTTTATATAAGGTGTAT 58.163 37.037 4.13 4.58 38.55 2.29
2300 2409 7.958053 ATATAAGGTGTATTAGTTTCGGCAC 57.042 36.000 0.00 0.00 0.00 5.01
2313 2422 4.947147 GGCACGGTGACCAAGGCA 62.947 66.667 13.29 0.00 0.00 4.75
2314 2423 3.660111 GCACGGTGACCAAGGCAC 61.660 66.667 13.29 0.00 35.56 5.01
2315 2424 2.203139 CACGGTGACCAAGGCACA 60.203 61.111 0.74 0.54 37.99 4.57
2316 2425 1.600636 CACGGTGACCAAGGCACAT 60.601 57.895 0.74 0.00 37.99 3.21
2317 2426 0.321210 CACGGTGACCAAGGCACATA 60.321 55.000 0.74 0.00 37.99 2.29
2318 2427 0.398696 ACGGTGACCAAGGCACATAA 59.601 50.000 1.11 0.00 37.99 1.90
2319 2428 1.004277 ACGGTGACCAAGGCACATAAT 59.996 47.619 1.11 0.00 37.99 1.28
2320 2429 2.091541 CGGTGACCAAGGCACATAATT 58.908 47.619 1.11 0.00 37.99 1.40
2321 2430 3.275143 CGGTGACCAAGGCACATAATTA 58.725 45.455 1.11 0.00 37.99 1.40
2322 2431 3.882888 CGGTGACCAAGGCACATAATTAT 59.117 43.478 1.11 0.00 37.99 1.28
2323 2432 5.060506 CGGTGACCAAGGCACATAATTATA 58.939 41.667 1.11 0.00 37.99 0.98
2324 2433 5.179368 CGGTGACCAAGGCACATAATTATAG 59.821 44.000 1.11 0.00 37.99 1.31
2325 2434 6.296026 GGTGACCAAGGCACATAATTATAGA 58.704 40.000 2.52 0.00 37.99 1.98
2326 2435 6.204882 GGTGACCAAGGCACATAATTATAGAC 59.795 42.308 2.52 0.00 37.99 2.59
2327 2436 6.765989 GTGACCAAGGCACATAATTATAGACA 59.234 38.462 0.00 0.00 36.31 3.41
2328 2437 7.282224 GTGACCAAGGCACATAATTATAGACAA 59.718 37.037 0.00 0.00 36.31 3.18
2329 2438 7.998383 TGACCAAGGCACATAATTATAGACAAT 59.002 33.333 0.00 0.00 0.00 2.71
2330 2439 8.169977 ACCAAGGCACATAATTATAGACAATG 57.830 34.615 0.00 0.93 0.00 2.82
2331 2440 7.779798 ACCAAGGCACATAATTATAGACAATGT 59.220 33.333 0.00 0.00 0.00 2.71
2332 2441 9.283768 CCAAGGCACATAATTATAGACAATGTA 57.716 33.333 0.00 0.00 0.00 2.29
2334 2443 9.507329 AAGGCACATAATTATAGACAATGTAGG 57.493 33.333 0.00 0.00 0.00 3.18
2335 2444 8.880244 AGGCACATAATTATAGACAATGTAGGA 58.120 33.333 0.00 0.00 0.00 2.94
2336 2445 8.936864 GGCACATAATTATAGACAATGTAGGAC 58.063 37.037 0.00 0.00 0.00 3.85
2337 2446 8.648097 GCACATAATTATAGACAATGTAGGACG 58.352 37.037 0.00 0.00 0.00 4.79
2338 2447 9.908152 CACATAATTATAGACAATGTAGGACGA 57.092 33.333 0.00 0.00 0.00 4.20
2343 2452 8.744008 ATTATAGACAATGTAGGACGAAATCG 57.256 34.615 0.48 0.48 46.33 3.34
2344 2453 3.187700 AGACAATGTAGGACGAAATCGC 58.812 45.455 2.15 0.00 44.43 4.58
2345 2454 3.119101 AGACAATGTAGGACGAAATCGCT 60.119 43.478 2.15 0.00 44.43 4.93
2346 2455 3.187700 ACAATGTAGGACGAAATCGCTC 58.812 45.455 2.15 0.37 44.43 5.03
2347 2456 3.119101 ACAATGTAGGACGAAATCGCTCT 60.119 43.478 2.15 3.53 44.43 4.09
2348 2457 3.802948 ATGTAGGACGAAATCGCTCTT 57.197 42.857 2.15 0.00 44.43 2.85
2349 2458 2.876091 TGTAGGACGAAATCGCTCTTG 58.124 47.619 2.15 0.00 44.43 3.02
2350 2459 2.194271 GTAGGACGAAATCGCTCTTGG 58.806 52.381 2.15 0.00 44.43 3.61
2351 2460 0.741221 AGGACGAAATCGCTCTTGGC 60.741 55.000 2.15 0.00 44.43 4.52
2352 2461 0.741221 GGACGAAATCGCTCTTGGCT 60.741 55.000 2.15 0.00 44.43 4.75
2353 2462 1.470979 GGACGAAATCGCTCTTGGCTA 60.471 52.381 2.15 0.00 44.43 3.93
2354 2463 2.268298 GACGAAATCGCTCTTGGCTAA 58.732 47.619 2.15 0.00 44.43 3.09
2355 2464 2.866762 GACGAAATCGCTCTTGGCTAAT 59.133 45.455 2.15 0.00 44.43 1.73
2356 2465 3.270877 ACGAAATCGCTCTTGGCTAATT 58.729 40.909 2.15 0.00 44.43 1.40
2357 2466 4.439057 ACGAAATCGCTCTTGGCTAATTA 58.561 39.130 2.15 0.00 44.43 1.40
2358 2467 4.508124 ACGAAATCGCTCTTGGCTAATTAG 59.492 41.667 8.20 8.20 44.43 1.73
2359 2468 4.508124 CGAAATCGCTCTTGGCTAATTAGT 59.492 41.667 13.91 0.00 39.13 2.24
2360 2469 5.006746 CGAAATCGCTCTTGGCTAATTAGTT 59.993 40.000 13.91 0.00 39.13 2.24
2361 2470 5.741388 AATCGCTCTTGGCTAATTAGTTG 57.259 39.130 13.91 2.84 39.13 3.16
2362 2471 4.465632 TCGCTCTTGGCTAATTAGTTGA 57.534 40.909 13.91 6.54 39.13 3.18
2363 2472 5.023533 TCGCTCTTGGCTAATTAGTTGAT 57.976 39.130 13.91 0.00 39.13 2.57
2364 2473 5.428253 TCGCTCTTGGCTAATTAGTTGATT 58.572 37.500 13.91 0.00 39.13 2.57
2365 2474 6.578944 TCGCTCTTGGCTAATTAGTTGATTA 58.421 36.000 13.91 0.00 39.13 1.75
2366 2475 7.217200 TCGCTCTTGGCTAATTAGTTGATTAT 58.783 34.615 13.91 0.00 39.13 1.28
2367 2476 7.385205 TCGCTCTTGGCTAATTAGTTGATTATC 59.615 37.037 13.91 0.00 39.13 1.75
2368 2477 7.513968 GCTCTTGGCTAATTAGTTGATTATCG 58.486 38.462 13.91 0.00 38.06 2.92
2369 2478 7.385205 GCTCTTGGCTAATTAGTTGATTATCGA 59.615 37.037 13.91 0.00 38.06 3.59
2370 2479 8.589335 TCTTGGCTAATTAGTTGATTATCGAC 57.411 34.615 13.91 4.47 0.00 4.20
2371 2480 8.201464 TCTTGGCTAATTAGTTGATTATCGACA 58.799 33.333 14.32 0.00 33.17 4.35
2372 2481 8.725405 TTGGCTAATTAGTTGATTATCGACAA 57.275 30.769 14.32 7.42 33.17 3.18
2373 2482 8.365399 TGGCTAATTAGTTGATTATCGACAAG 57.635 34.615 14.32 5.36 33.17 3.16
2374 2483 7.985184 TGGCTAATTAGTTGATTATCGACAAGT 59.015 33.333 14.32 8.50 33.17 3.16
2375 2484 9.472361 GGCTAATTAGTTGATTATCGACAAGTA 57.528 33.333 14.32 9.05 33.17 2.24
2408 2517 7.556733 AGACTAGTAAAGGAAGAGATACACG 57.443 40.000 0.00 0.00 0.00 4.49
2409 2518 6.038492 AGACTAGTAAAGGAAGAGATACACGC 59.962 42.308 0.00 0.00 0.00 5.34
2410 2519 5.651139 ACTAGTAAAGGAAGAGATACACGCA 59.349 40.000 0.00 0.00 0.00 5.24
2411 2520 5.401531 AGTAAAGGAAGAGATACACGCAA 57.598 39.130 0.00 0.00 0.00 4.85
2412 2521 5.978814 AGTAAAGGAAGAGATACACGCAAT 58.021 37.500 0.00 0.00 0.00 3.56
2413 2522 6.043411 AGTAAAGGAAGAGATACACGCAATC 58.957 40.000 0.00 0.00 0.00 2.67
2414 2523 3.085443 AGGAAGAGATACACGCAATCG 57.915 47.619 0.00 0.00 42.43 3.34
2415 2524 2.688446 AGGAAGAGATACACGCAATCGA 59.312 45.455 0.00 0.00 39.41 3.59
2416 2525 3.046390 GGAAGAGATACACGCAATCGAG 58.954 50.000 0.00 0.00 39.41 4.04
2417 2526 3.243101 GGAAGAGATACACGCAATCGAGA 60.243 47.826 0.00 0.00 39.41 4.04
2418 2527 3.617540 AGAGATACACGCAATCGAGAG 57.382 47.619 0.00 0.00 39.41 3.20
2436 2545 7.469537 TCGAGAGAGAGATACTTTCCTTTTT 57.530 36.000 0.00 0.00 34.84 1.94
2483 2592 9.920946 TGCAATTAGGAGAAATATACTTTCCTT 57.079 29.630 3.04 0.00 39.02 3.36
2490 2599 9.467796 AGGAGAAATATACTTTCCTTTTTCTGG 57.532 33.333 0.00 0.00 34.71 3.86
2491 2600 9.462606 GGAGAAATATACTTTCCTTTTTCTGGA 57.537 33.333 0.00 0.00 34.52 3.86
2493 2602 9.467796 AGAAATATACTTTCCTTTTTCTGGAGG 57.532 33.333 0.00 0.00 33.47 4.30
2494 2603 8.595362 AAATATACTTTCCTTTTTCTGGAGGG 57.405 34.615 0.00 0.00 34.76 4.30
2495 2604 3.973472 ACTTTCCTTTTTCTGGAGGGT 57.027 42.857 0.00 0.00 34.76 4.34
2496 2605 4.265856 ACTTTCCTTTTTCTGGAGGGTT 57.734 40.909 0.00 0.00 34.76 4.11
2497 2606 5.397553 ACTTTCCTTTTTCTGGAGGGTTA 57.602 39.130 0.00 0.00 34.76 2.85
2498 2607 5.773091 ACTTTCCTTTTTCTGGAGGGTTAA 58.227 37.500 0.00 0.00 34.76 2.01
2499 2608 6.199376 ACTTTCCTTTTTCTGGAGGGTTAAA 58.801 36.000 0.00 0.00 34.76 1.52
2500 2609 6.670464 ACTTTCCTTTTTCTGGAGGGTTAAAA 59.330 34.615 0.00 0.00 34.76 1.52
2501 2610 6.724893 TTCCTTTTTCTGGAGGGTTAAAAG 57.275 37.500 0.00 0.00 36.22 2.27
2502 2611 4.587262 TCCTTTTTCTGGAGGGTTAAAAGC 59.413 41.667 0.00 0.00 35.52 3.51
2503 2612 4.546570 CTTTTTCTGGAGGGTTAAAAGCG 58.453 43.478 0.00 0.00 31.51 4.68
2504 2613 2.194201 TTCTGGAGGGTTAAAAGCGG 57.806 50.000 0.00 0.00 0.00 5.52
2505 2614 1.354101 TCTGGAGGGTTAAAAGCGGA 58.646 50.000 0.00 0.00 0.00 5.54
2506 2615 1.700739 TCTGGAGGGTTAAAAGCGGAA 59.299 47.619 0.00 0.00 0.00 4.30
2507 2616 2.307686 TCTGGAGGGTTAAAAGCGGAAT 59.692 45.455 0.00 0.00 0.00 3.01
2508 2617 3.089284 CTGGAGGGTTAAAAGCGGAATT 58.911 45.455 0.00 0.00 0.00 2.17
2509 2618 4.019141 TCTGGAGGGTTAAAAGCGGAATTA 60.019 41.667 0.00 0.00 0.00 1.40
2510 2619 4.266714 TGGAGGGTTAAAAGCGGAATTAG 58.733 43.478 0.00 0.00 0.00 1.73
2511 2620 3.630769 GGAGGGTTAAAAGCGGAATTAGG 59.369 47.826 0.00 0.00 0.00 2.69
2512 2621 4.520179 GAGGGTTAAAAGCGGAATTAGGA 58.480 43.478 0.00 0.00 0.00 2.94
2513 2622 5.125367 AGGGTTAAAAGCGGAATTAGGAT 57.875 39.130 0.00 0.00 0.00 3.24
2514 2623 4.887655 AGGGTTAAAAGCGGAATTAGGATG 59.112 41.667 0.00 0.00 0.00 3.51
2515 2624 4.885325 GGGTTAAAAGCGGAATTAGGATGA 59.115 41.667 0.00 0.00 0.00 2.92
2516 2625 5.358725 GGGTTAAAAGCGGAATTAGGATGAA 59.641 40.000 0.00 0.00 0.00 2.57
2517 2626 6.040504 GGGTTAAAAGCGGAATTAGGATGAAT 59.959 38.462 0.00 0.00 0.00 2.57
2518 2627 7.417456 GGGTTAAAAGCGGAATTAGGATGAATT 60.417 37.037 0.00 0.00 0.00 2.17
2519 2628 8.626526 GGTTAAAAGCGGAATTAGGATGAATTA 58.373 33.333 0.00 0.00 0.00 1.40
2520 2629 9.665264 GTTAAAAGCGGAATTAGGATGAATTAG 57.335 33.333 0.00 0.00 0.00 1.73
2521 2630 9.621629 TTAAAAGCGGAATTAGGATGAATTAGA 57.378 29.630 0.00 0.00 0.00 2.10
2522 2631 8.519799 AAAAGCGGAATTAGGATGAATTAGAA 57.480 30.769 0.00 0.00 0.00 2.10
2523 2632 7.736447 AAGCGGAATTAGGATGAATTAGAAG 57.264 36.000 0.00 0.00 0.00 2.85
2524 2633 7.067496 AGCGGAATTAGGATGAATTAGAAGA 57.933 36.000 0.00 0.00 0.00 2.87
2525 2634 7.509546 AGCGGAATTAGGATGAATTAGAAGAA 58.490 34.615 0.00 0.00 0.00 2.52
2526 2635 7.993183 AGCGGAATTAGGATGAATTAGAAGAAA 59.007 33.333 0.00 0.00 0.00 2.52
2527 2636 8.787852 GCGGAATTAGGATGAATTAGAAGAAAT 58.212 33.333 0.00 0.00 0.00 2.17
2529 2638 9.905171 GGAATTAGGATGAATTAGAAGAAATGC 57.095 33.333 0.00 0.00 0.00 3.56
2532 2641 6.705863 AGGATGAATTAGAAGAAATGCACC 57.294 37.500 0.00 0.00 26.90 5.01
2533 2642 6.430007 AGGATGAATTAGAAGAAATGCACCT 58.570 36.000 0.00 0.00 26.90 4.00
2534 2643 6.894103 AGGATGAATTAGAAGAAATGCACCTT 59.106 34.615 0.00 0.00 29.03 3.50
2535 2644 8.055181 AGGATGAATTAGAAGAAATGCACCTTA 58.945 33.333 0.00 0.00 29.03 2.69
2536 2645 8.131731 GGATGAATTAGAAGAAATGCACCTTAC 58.868 37.037 0.00 0.00 26.90 2.34
2537 2646 7.994425 TGAATTAGAAGAAATGCACCTTACA 57.006 32.000 0.00 0.00 0.00 2.41
2538 2647 8.579850 TGAATTAGAAGAAATGCACCTTACAT 57.420 30.769 0.00 0.00 0.00 2.29
2539 2648 9.023962 TGAATTAGAAGAAATGCACCTTACATT 57.976 29.630 0.00 0.00 39.38 2.71
2542 2651 9.643693 ATTAGAAGAAATGCACCTTACATTTTG 57.356 29.630 3.49 0.00 45.33 2.44
2543 2652 6.458210 AGAAGAAATGCACCTTACATTTTGG 58.542 36.000 3.49 0.00 45.33 3.28
2544 2653 6.267471 AGAAGAAATGCACCTTACATTTTGGA 59.733 34.615 3.49 0.00 45.33 3.53
2545 2654 6.418057 AGAAATGCACCTTACATTTTGGAA 57.582 33.333 3.49 0.00 45.33 3.53
2546 2655 7.008021 AGAAATGCACCTTACATTTTGGAAT 57.992 32.000 3.49 0.00 45.33 3.01
2547 2656 7.452562 AGAAATGCACCTTACATTTTGGAATT 58.547 30.769 3.49 0.00 45.33 2.17
2548 2657 7.938490 AGAAATGCACCTTACATTTTGGAATTT 59.062 29.630 3.49 0.00 45.33 1.82
2549 2658 8.462589 AAATGCACCTTACATTTTGGAATTTT 57.537 26.923 0.00 0.00 43.42 1.82
2550 2659 9.566432 AAATGCACCTTACATTTTGGAATTTTA 57.434 25.926 0.00 0.00 43.42 1.52
2551 2660 9.737844 AATGCACCTTACATTTTGGAATTTTAT 57.262 25.926 0.00 0.00 34.05 1.40
2552 2661 8.770438 TGCACCTTACATTTTGGAATTTTATC 57.230 30.769 0.00 0.00 0.00 1.75
2553 2662 8.370940 TGCACCTTACATTTTGGAATTTTATCA 58.629 29.630 0.00 0.00 0.00 2.15
2554 2663 9.213799 GCACCTTACATTTTGGAATTTTATCAA 57.786 29.630 0.00 0.00 0.00 2.57
2584 2693 9.333724 ACAAATACACCTTATATAAAGGAACGG 57.666 33.333 10.67 6.38 39.81 4.44
2585 2694 9.550406 CAAATACACCTTATATAAAGGAACGGA 57.450 33.333 10.67 0.00 39.81 4.69
2586 2695 9.774413 AAATACACCTTATATAAAGGAACGGAG 57.226 33.333 10.67 5.47 39.81 4.63
2587 2696 6.170846 ACACCTTATATAAAGGAACGGAGG 57.829 41.667 10.67 4.52 39.81 4.30
2588 2697 5.071384 ACACCTTATATAAAGGAACGGAGGG 59.929 44.000 10.67 4.11 39.81 4.30
2589 2698 5.306160 CACCTTATATAAAGGAACGGAGGGA 59.694 44.000 10.67 0.00 39.81 4.20
2590 2699 5.543020 ACCTTATATAAAGGAACGGAGGGAG 59.457 44.000 10.67 0.00 39.81 4.30
2591 2700 5.543020 CCTTATATAAAGGAACGGAGGGAGT 59.457 44.000 0.00 0.00 39.81 3.85
2592 2701 6.723052 CCTTATATAAAGGAACGGAGGGAGTA 59.277 42.308 0.00 0.00 39.81 2.59
2607 2716 6.522114 CGGAGGGAGTATATAGTAACTGGACT 60.522 46.154 0.00 0.00 0.00 3.85
2662 2771 6.869695 TGATAGTTGGTAGTTTAATCTCGCA 58.130 36.000 0.00 0.00 0.00 5.10
2717 2826 8.135529 GGGTTTTTATCATTTATGCCACTAGTC 58.864 37.037 0.00 0.00 0.00 2.59
2721 2830 3.194861 TCATTTATGCCACTAGTCGTGC 58.805 45.455 0.00 0.00 42.42 5.34
2800 2909 4.916983 TTAGGCGCATGCTCAAAAATAT 57.083 36.364 17.13 0.00 42.25 1.28
3093 3269 6.158695 ACCTGACAGAAATGGTATCTAATGGT 59.841 38.462 3.32 0.00 0.00 3.55
3141 3317 4.759693 ACGATGGCATTTTTGAGTAGTTGA 59.240 37.500 0.00 0.00 0.00 3.18
3315 3498 4.187694 CTCTTTCCCTCTGATGTTACTGC 58.812 47.826 0.00 0.00 0.00 4.40
3353 3536 8.830580 CAACTTAATTAACGTGGATGATCATCT 58.169 33.333 29.85 15.70 37.92 2.90
3372 3555 6.533730 TCATCTTGTGGTAAACTGTCTGATT 58.466 36.000 0.00 0.00 0.00 2.57
3955 4141 5.234466 AGTCTTCCTTGCTTCAGTGTAAT 57.766 39.130 0.00 0.00 0.00 1.89
4004 4190 4.881157 AAAATTACCCTACATGCTCCCT 57.119 40.909 0.00 0.00 0.00 4.20
4016 4202 1.376553 GCTCCCTGCACTGTTCCTC 60.377 63.158 0.00 0.00 42.31 3.71
4034 4220 7.397221 TGTTCCTCTAATTATGCCATGATAGG 58.603 38.462 0.00 0.00 0.00 2.57
4039 4225 7.147426 CCTCTAATTATGCCATGATAGGGATCA 60.147 40.741 0.00 0.00 46.13 2.92
4235 4421 7.371159 TCAAGCTATAGAGGTAATGTCATTCG 58.629 38.462 3.21 0.00 31.56 3.34
4697 4895 4.225267 CCAACTAGACCAACAGGGACTTAT 59.775 45.833 0.00 0.00 41.97 1.73
4698 4896 5.280521 CCAACTAGACCAACAGGGACTTATT 60.281 44.000 0.00 0.00 41.97 1.40
4699 4897 6.238648 CAACTAGACCAACAGGGACTTATTT 58.761 40.000 0.00 0.00 41.97 1.40
4700 4898 5.805728 ACTAGACCAACAGGGACTTATTTG 58.194 41.667 0.00 0.00 41.97 2.32
4701 4899 4.034285 AGACCAACAGGGACTTATTTGG 57.966 45.455 0.00 0.00 42.73 3.28
4702 4900 3.089284 GACCAACAGGGACTTATTTGGG 58.911 50.000 3.84 0.00 41.88 4.12
4721 4938 1.757682 GGAAACAACCCAGACACACA 58.242 50.000 0.00 0.00 0.00 3.72
4722 4939 1.404035 GGAAACAACCCAGACACACAC 59.596 52.381 0.00 0.00 0.00 3.82
4723 4940 1.063469 GAAACAACCCAGACACACACG 59.937 52.381 0.00 0.00 0.00 4.49
4724 4941 0.746563 AACAACCCAGACACACACGG 60.747 55.000 0.00 0.00 0.00 4.94
4725 4942 1.145156 CAACCCAGACACACACGGA 59.855 57.895 0.00 0.00 0.00 4.69
4726 4943 1.145377 AACCCAGACACACACGGAC 59.855 57.895 0.00 0.00 0.00 4.79
4727 4944 1.618876 AACCCAGACACACACGGACA 61.619 55.000 0.00 0.00 0.00 4.02
4735 4952 1.760875 ACACACGGACACACCCTCT 60.761 57.895 0.00 0.00 34.64 3.69
4742 4959 3.302347 GACACACCCTCTGGAGCCG 62.302 68.421 0.00 0.00 34.81 5.52
4767 4984 3.070576 GAACATGGGTGGCAGGCC 61.071 66.667 2.62 2.62 0.00 5.19
4812 5029 2.388232 GGCTAACTGGTTGACGCCG 61.388 63.158 0.00 0.00 0.00 6.46
4828 5045 2.186903 CGAGTTCCCCACATCCCG 59.813 66.667 0.00 0.00 0.00 5.14
4874 5091 5.041287 GGTTCTTTTTAGTGCACAGGTTTC 58.959 41.667 21.04 0.81 0.00 2.78
5047 5288 4.142093 CCACCTGATTCCTATGCCTTTTTG 60.142 45.833 0.00 0.00 0.00 2.44
5068 5309 3.256879 TGTGTTCCTTTGTTTTGCACTCA 59.743 39.130 0.00 0.00 0.00 3.41
5105 5349 5.337250 GGGCCTTAGGGTTTCAACTTTATTG 60.337 44.000 0.84 0.00 34.45 1.90
5349 5707 0.607489 AGAGGTTGCTTGCAGCGAAT 60.607 50.000 3.57 0.00 46.26 3.34
5421 5779 1.699083 CCAACCCAAGGGCTTCAAAAT 59.301 47.619 4.70 0.00 39.32 1.82
5495 5853 3.332919 GACAGATGCAACATGTCAGACT 58.667 45.455 18.92 0.00 42.30 3.24
5592 5950 1.136828 TGCAACAAGTACCACCTCCT 58.863 50.000 0.00 0.00 0.00 3.69
5727 6085 1.685803 CCACCTCCCAATATGCAAGCA 60.686 52.381 0.00 0.00 0.00 3.91
5841 6199 8.154203 CCTTCTGGTTAAAAATACAAATGGGTT 58.846 33.333 0.00 0.00 0.00 4.11
5842 6200 9.203421 CTTCTGGTTAAAAATACAAATGGGTTC 57.797 33.333 0.00 0.00 0.00 3.62
5844 6202 7.290248 TCTGGTTAAAAATACAAATGGGTTCCA 59.710 33.333 0.00 0.00 38.19 3.53
5891 6253 5.221362 GCAGTTGTACCAAGGGTGTTAAAAT 60.221 40.000 0.00 0.00 36.19 1.82
5996 6358 5.560760 CGTGACTTTTGTGATTGCATGTACT 60.561 40.000 0.00 0.00 0.00 2.73
6002 6364 3.605634 TGTGATTGCATGTACTGTACCC 58.394 45.455 14.91 4.79 0.00 3.69
6057 6419 2.710096 AGGACAATTATGGACCGTGG 57.290 50.000 0.00 0.00 34.04 4.94
6063 6425 1.204146 ATTATGGACCGTGGTCTGCT 58.796 50.000 17.99 6.43 44.04 4.24
6064 6426 1.855295 TTATGGACCGTGGTCTGCTA 58.145 50.000 17.99 5.55 44.04 3.49
6066 6428 0.465705 ATGGACCGTGGTCTGCTATG 59.534 55.000 17.99 0.00 44.04 2.23
6069 6431 0.530744 GACCGTGGTCTGCTATGTCA 59.469 55.000 11.81 0.00 41.57 3.58
6072 6434 1.136891 CCGTGGTCTGCTATGTCATCA 59.863 52.381 0.00 0.00 0.00 3.07
6084 6446 9.045223 TCTGCTATGTCATCATTACATTGTTAC 57.955 33.333 0.00 0.00 38.49 2.50
6121 6483 2.003937 TTTTAAACAGGCCCCTGGTC 57.996 50.000 17.97 0.00 44.18 4.02
6150 6512 0.315886 TGTCGCTCAACTTTCGGCTA 59.684 50.000 0.00 0.00 0.00 3.93
6166 6528 5.957842 TCGGCTATTTTCATGAAACAAGT 57.042 34.783 20.35 9.52 0.00 3.16
6167 6529 7.441890 TTCGGCTATTTTCATGAAACAAGTA 57.558 32.000 20.35 6.18 0.00 2.24
6172 6534 7.865385 GGCTATTTTCATGAAACAAGTAACACA 59.135 33.333 20.35 2.48 0.00 3.72
6178 6540 6.804677 TCATGAAACAAGTAACACAATGCTT 58.195 32.000 0.00 0.00 0.00 3.91
6181 6543 7.897575 TGAAACAAGTAACACAATGCTTTTT 57.102 28.000 0.00 0.00 0.00 1.94
6182 6544 7.958674 TGAAACAAGTAACACAATGCTTTTTC 58.041 30.769 0.00 0.00 31.35 2.29
6183 6545 7.816995 TGAAACAAGTAACACAATGCTTTTTCT 59.183 29.630 0.00 0.00 31.61 2.52
6186 6548 9.463443 AACAAGTAACACAATGCTTTTTCTATC 57.537 29.630 0.00 0.00 0.00 2.08
6187 6549 8.629158 ACAAGTAACACAATGCTTTTTCTATCA 58.371 29.630 0.00 0.00 0.00 2.15
6188 6550 9.462174 CAAGTAACACAATGCTTTTTCTATCAA 57.538 29.630 0.00 0.00 0.00 2.57
6189 6551 9.683069 AAGTAACACAATGCTTTTTCTATCAAG 57.317 29.630 0.00 0.00 0.00 3.02
6190 6552 8.299570 AGTAACACAATGCTTTTTCTATCAAGG 58.700 33.333 0.00 0.00 0.00 3.61
6194 6556 8.806146 ACACAATGCTTTTTCTATCAAGGTATT 58.194 29.630 0.00 0.00 0.00 1.89
6195 6557 9.079833 CACAATGCTTTTTCTATCAAGGTATTG 57.920 33.333 0.00 0.00 37.80 1.90
6196 6558 8.806146 ACAATGCTTTTTCTATCAAGGTATTGT 58.194 29.630 5.72 5.72 37.68 2.71
6197 6559 9.643693 CAATGCTTTTTCTATCAAGGTATTGTT 57.356 29.630 0.00 0.00 37.68 2.83
6200 6562 8.956426 TGCTTTTTCTATCAAGGTATTGTTAGG 58.044 33.333 6.35 0.00 38.46 2.69
6201 6563 8.957466 GCTTTTTCTATCAAGGTATTGTTAGGT 58.043 33.333 6.35 0.00 38.46 3.08
6210 6572 8.294954 TCAAGGTATTGTTAGGTTGAAAAACA 57.705 30.769 0.00 0.00 35.01 2.83
6211 6573 8.919145 TCAAGGTATTGTTAGGTTGAAAAACAT 58.081 29.630 0.00 0.00 35.01 2.71
6212 6574 8.977505 CAAGGTATTGTTAGGTTGAAAAACATG 58.022 33.333 0.00 0.00 34.45 3.21
6213 6575 8.245195 AGGTATTGTTAGGTTGAAAAACATGT 57.755 30.769 0.00 0.00 34.45 3.21
6214 6576 8.700973 AGGTATTGTTAGGTTGAAAAACATGTT 58.299 29.630 4.92 4.92 34.45 2.71
6215 6577 9.320352 GGTATTGTTAGGTTGAAAAACATGTTT 57.680 29.630 18.13 18.13 34.45 2.83
6217 6579 7.602517 TTGTTAGGTTGAAAAACATGTTTGG 57.397 32.000 23.93 0.00 34.45 3.28
6218 6580 5.582665 TGTTAGGTTGAAAAACATGTTTGGC 59.417 36.000 23.93 18.08 34.45 4.52
6219 6581 4.486125 AGGTTGAAAAACATGTTTGGCT 57.514 36.364 23.93 11.91 34.45 4.75
6220 6582 4.190772 AGGTTGAAAAACATGTTTGGCTG 58.809 39.130 23.93 0.00 34.45 4.85
6221 6583 3.938334 GGTTGAAAAACATGTTTGGCTGT 59.062 39.130 23.93 5.61 30.22 4.40
6222 6584 4.201802 GGTTGAAAAACATGTTTGGCTGTG 60.202 41.667 23.93 0.00 30.22 3.66
6223 6585 2.935201 TGAAAAACATGTTTGGCTGTGC 59.065 40.909 23.93 7.71 32.36 4.57
6224 6586 1.569708 AAAACATGTTTGGCTGTGCG 58.430 45.000 23.93 0.00 32.36 5.34
6225 6587 0.459489 AAACATGTTTGGCTGTGCGT 59.541 45.000 22.71 0.00 0.00 5.24
6226 6588 0.459489 AACATGTTTGGCTGTGCGTT 59.541 45.000 4.92 0.00 0.00 4.84
6227 6589 0.459489 ACATGTTTGGCTGTGCGTTT 59.541 45.000 0.00 0.00 0.00 3.60
6228 6590 1.678627 ACATGTTTGGCTGTGCGTTTA 59.321 42.857 0.00 0.00 0.00 2.01
6229 6591 2.295909 ACATGTTTGGCTGTGCGTTTAT 59.704 40.909 0.00 0.00 0.00 1.40
6230 6592 2.414058 TGTTTGGCTGTGCGTTTATG 57.586 45.000 0.00 0.00 0.00 1.90
6231 6593 1.950216 TGTTTGGCTGTGCGTTTATGA 59.050 42.857 0.00 0.00 0.00 2.15
6232 6594 2.359214 TGTTTGGCTGTGCGTTTATGAA 59.641 40.909 0.00 0.00 0.00 2.57
6233 6595 3.005261 TGTTTGGCTGTGCGTTTATGAAT 59.995 39.130 0.00 0.00 0.00 2.57
6234 6596 4.216472 TGTTTGGCTGTGCGTTTATGAATA 59.784 37.500 0.00 0.00 0.00 1.75
6235 6597 5.157781 GTTTGGCTGTGCGTTTATGAATAA 58.842 37.500 0.00 0.00 0.00 1.40
6236 6598 5.378292 TTGGCTGTGCGTTTATGAATAAA 57.622 34.783 0.00 0.00 0.00 1.40
6237 6599 4.728534 TGGCTGTGCGTTTATGAATAAAC 58.271 39.130 13.58 13.58 45.27 2.01
6238 6600 4.102649 GGCTGTGCGTTTATGAATAAACC 58.897 43.478 16.50 11.45 45.71 3.27
6239 6601 3.783943 GCTGTGCGTTTATGAATAAACCG 59.216 43.478 16.50 13.28 45.71 4.44
6240 6602 4.670735 GCTGTGCGTTTATGAATAAACCGT 60.671 41.667 16.50 0.00 45.71 4.83
6241 6603 5.359716 TGTGCGTTTATGAATAAACCGTT 57.640 34.783 16.50 0.00 45.71 4.44
6242 6604 5.147865 TGTGCGTTTATGAATAAACCGTTG 58.852 37.500 16.50 7.08 45.71 4.10
6243 6605 4.555747 GTGCGTTTATGAATAAACCGTTGG 59.444 41.667 16.50 6.80 45.71 3.77
6244 6606 4.099824 GCGTTTATGAATAAACCGTTGGG 58.900 43.478 16.50 6.26 45.71 4.12
6245 6607 4.099824 CGTTTATGAATAAACCGTTGGGC 58.900 43.478 16.50 0.00 45.71 5.36
6246 6608 4.099824 GTTTATGAATAAACCGTTGGGCG 58.900 43.478 12.86 0.00 43.81 6.13
6247 6609 1.828979 ATGAATAAACCGTTGGGCGT 58.171 45.000 0.00 0.00 39.32 5.68
6248 6610 1.158434 TGAATAAACCGTTGGGCGTC 58.842 50.000 0.00 0.00 39.32 5.19
6249 6611 1.158434 GAATAAACCGTTGGGCGTCA 58.842 50.000 0.00 0.00 39.32 4.35
6250 6612 1.129811 GAATAAACCGTTGGGCGTCAG 59.870 52.381 0.00 0.00 39.32 3.51
6251 6613 0.675522 ATAAACCGTTGGGCGTCAGG 60.676 55.000 0.00 0.00 39.32 3.86
6273 8177 3.681594 GCTATAGTGTTTGCTAGCACCCA 60.682 47.826 19.17 14.13 37.21 4.51
6275 8179 0.537371 AGTGTTTGCTAGCACCCACC 60.537 55.000 29.08 17.89 36.35 4.61
6277 8181 1.599797 GTTTGCTAGCACCCACCGT 60.600 57.895 19.17 0.00 0.00 4.83
6285 8189 0.110486 AGCACCCACCGTTCTGAAAT 59.890 50.000 0.00 0.00 0.00 2.17
6289 8193 3.004944 GCACCCACCGTTCTGAAATTTTA 59.995 43.478 0.00 0.00 0.00 1.52
6295 8199 6.704050 CCCACCGTTCTGAAATTTTATTTTGT 59.296 34.615 0.00 0.00 0.00 2.83
6350 8255 0.777446 TTTCCCTTGTAAGCCAGCCT 59.223 50.000 0.00 0.00 0.00 4.58
6351 8256 0.038166 TTCCCTTGTAAGCCAGCCTG 59.962 55.000 0.00 0.00 0.00 4.85
6352 8257 1.133809 TCCCTTGTAAGCCAGCCTGT 61.134 55.000 0.00 0.00 0.00 4.00
6398 8315 4.124970 CAGGGCGGTTAGAGTTAATAACC 58.875 47.826 0.00 6.46 45.81 2.85
6456 8373 3.201930 TGAGGCTACCTTGCAATATTCCA 59.798 43.478 0.00 0.00 31.76 3.53
6458 8375 3.954258 AGGCTACCTTGCAATATTCCAAC 59.046 43.478 0.00 0.00 34.04 3.77
6459 8376 3.699038 GGCTACCTTGCAATATTCCAACA 59.301 43.478 0.00 0.00 34.04 3.33
6477 8394 2.708671 ACATCCCCATGTGCTGGTA 58.291 52.632 0.00 0.00 44.30 3.25
6479 8396 0.255604 CATCCCCATGTGCTGGTACA 59.744 55.000 0.00 0.00 44.30 2.90
6480 8397 1.133699 CATCCCCATGTGCTGGTACAT 60.134 52.381 0.00 0.00 44.30 2.29
6487 8404 2.112380 TGTGCTGGTACATGGACATG 57.888 50.000 10.99 10.57 44.15 3.21
6488 8405 1.339920 TGTGCTGGTACATGGACATGG 60.340 52.381 10.99 0.03 42.91 3.66
6489 8406 0.991146 TGCTGGTACATGGACATGGT 59.009 50.000 10.99 5.24 42.91 3.55
6490 8407 1.339920 TGCTGGTACATGGACATGGTG 60.340 52.381 10.99 0.00 42.91 4.17
6498 8415 0.259647 ATGGACATGGTGATGGTGGG 59.740 55.000 0.00 0.00 33.39 4.61
6501 8418 1.494721 GGACATGGTGATGGTGGGTAT 59.505 52.381 0.00 0.00 33.39 2.73
6509 8426 7.682459 ACATGGTGATGGTGGGTATCTATATTA 59.318 37.037 0.00 0.00 33.39 0.98
6520 8437 6.380274 TGGGTATCTATATTACTGCTGCCTAC 59.620 42.308 0.00 0.00 0.00 3.18
6521 8438 6.380274 GGGTATCTATATTACTGCTGCCTACA 59.620 42.308 0.00 0.00 0.00 2.74
6522 8439 7.070074 GGGTATCTATATTACTGCTGCCTACAT 59.930 40.741 0.00 0.00 0.00 2.29
6523 8440 9.132923 GGTATCTATATTACTGCTGCCTACATA 57.867 37.037 0.00 0.00 0.00 2.29
6533 8450 2.900546 GCTGCCTACATATGTCCCTAGT 59.099 50.000 12.68 0.00 0.00 2.57
6544 8461 3.764237 TGTCCCTAGTGTCAACTTTCC 57.236 47.619 0.00 0.00 37.88 3.13
6585 8503 5.131308 TCCCCGACTGAATCATAATAACCAA 59.869 40.000 0.00 0.00 0.00 3.67
6586 8504 5.825679 CCCCGACTGAATCATAATAACCAAA 59.174 40.000 0.00 0.00 0.00 3.28
6587 8505 6.238648 CCCCGACTGAATCATAATAACCAAAC 60.239 42.308 0.00 0.00 0.00 2.93
6588 8506 6.238648 CCCGACTGAATCATAATAACCAAACC 60.239 42.308 0.00 0.00 0.00 3.27
6589 8507 6.317642 CCGACTGAATCATAATAACCAAACCA 59.682 38.462 0.00 0.00 0.00 3.67
6594 8512 8.359875 TGAATCATAATAACCAAACCATGTGT 57.640 30.769 0.00 0.00 0.00 3.72
6607 8525 5.801350 AACCATGTGTTATGTCTCAATCG 57.199 39.130 0.00 0.00 34.69 3.34
6617 8535 7.219154 GTGTTATGTCTCAATCGAGTCTTACAG 59.781 40.741 0.00 0.00 40.44 2.74
6619 8537 5.298197 TGTCTCAATCGAGTCTTACAGAC 57.702 43.478 0.00 0.00 45.38 3.51
6628 8546 6.879276 TCGAGTCTTACAGACCATATTAGG 57.121 41.667 0.09 0.00 46.18 2.69
6675 8593 0.917533 ATCAACTGAGATGGGCAGCT 59.082 50.000 0.00 0.00 36.86 4.24
6681 8599 1.301558 GAGATGGGCAGCTCCGATG 60.302 63.158 4.82 0.00 37.86 3.84
6688 8606 3.916544 CAGCTCCGATGGCCGCTA 61.917 66.667 0.00 0.00 36.84 4.26
6710 8628 0.111253 GGCATAGACCATCCCAAGGG 59.889 60.000 0.00 0.00 0.00 3.95
6730 8648 1.493854 AACCATACCCGTTGCCTCCA 61.494 55.000 0.00 0.00 0.00 3.86
6736 8654 3.322466 CCGTTGCCTCCACCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
6737 8655 2.046892 CGTTGCCTCCACCTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
6739 8657 2.853542 TTGCCTCCACCTCCTGCA 60.854 61.111 0.00 0.00 0.00 4.41
6741 8659 3.325753 GCCTCCACCTCCTGCACT 61.326 66.667 0.00 0.00 0.00 4.40
6742 8660 2.985456 CCTCCACCTCCTGCACTC 59.015 66.667 0.00 0.00 0.00 3.51
6809 8727 2.409870 GCTTCGCCATTGTCCCTGG 61.410 63.158 0.00 0.00 36.81 4.45
6819 8737 2.746279 TTGTCCCTGGCAGAAGAAAA 57.254 45.000 17.94 10.85 0.00 2.29
6820 8738 1.981256 TGTCCCTGGCAGAAGAAAAC 58.019 50.000 17.94 5.14 0.00 2.43
6821 8739 1.214175 TGTCCCTGGCAGAAGAAAACA 59.786 47.619 17.94 7.66 0.00 2.83
6822 8740 1.609072 GTCCCTGGCAGAAGAAAACAC 59.391 52.381 17.94 0.00 0.00 3.32
6823 8741 1.214175 TCCCTGGCAGAAGAAAACACA 59.786 47.619 17.94 0.00 0.00 3.72
6824 8742 1.338020 CCCTGGCAGAAGAAAACACAC 59.662 52.381 17.94 0.00 0.00 3.82
6825 8743 2.023673 CCTGGCAGAAGAAAACACACA 58.976 47.619 17.94 0.00 0.00 3.72
6826 8744 2.624838 CCTGGCAGAAGAAAACACACAT 59.375 45.455 17.94 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.964373 GGCGCCCGAAGAAGAAACA 60.964 57.895 18.11 0.00 0.00 2.83
88 98 2.793232 GACCAAATATAGCGACGGTGAC 59.207 50.000 10.33 0.00 0.00 3.67
89 99 2.542205 CGACCAAATATAGCGACGGTGA 60.542 50.000 10.33 0.00 0.00 4.02
95 105 2.101750 TCCAAGCGACCAAATATAGCGA 59.898 45.455 0.00 0.00 0.00 4.93
100 110 2.550978 CGTCTCCAAGCGACCAAATAT 58.449 47.619 0.00 0.00 0.00 1.28
101 111 1.404986 CCGTCTCCAAGCGACCAAATA 60.405 52.381 0.00 0.00 0.00 1.40
240 253 0.031616 TGGGGTTGACCTTTGGCTTT 60.032 50.000 0.00 0.00 40.03 3.51
340 362 2.206750 GCCAGCGAAATTACACCGATA 58.793 47.619 0.00 0.00 0.00 2.92
390 417 1.062488 AACTGCCACCCTGACCTCTT 61.062 55.000 0.00 0.00 0.00 2.85
398 425 2.056906 GAGTGACCAACTGCCACCCT 62.057 60.000 0.00 0.00 40.07 4.34
414 443 1.272715 CGAATATTTGCGCGCGAGT 59.727 52.632 37.18 24.11 0.00 4.18
494 523 0.863144 GTAAAGTTGGTTCAGCGCGA 59.137 50.000 12.10 0.00 0.00 5.87
519 548 3.282021 AGCAGCCATGATAAAATCGTGT 58.718 40.909 0.00 0.00 43.21 4.49
530 559 1.322538 TGACGCTCTAGCAGCCATGA 61.323 55.000 2.44 0.00 46.74 3.07
541 570 1.289380 GGACCGAAACTGACGCTCT 59.711 57.895 0.00 0.00 0.00 4.09
565 595 2.058798 CACACAACGACTTCATAGCGT 58.941 47.619 0.00 0.00 36.28 5.07
566 596 2.058798 ACACACAACGACTTCATAGCG 58.941 47.619 0.00 0.00 0.00 4.26
567 597 3.363970 CCAACACACAACGACTTCATAGC 60.364 47.826 0.00 0.00 0.00 2.97
568 598 4.055360 TCCAACACACAACGACTTCATAG 58.945 43.478 0.00 0.00 0.00 2.23
570 600 2.872245 CTCCAACACACAACGACTTCAT 59.128 45.455 0.00 0.00 0.00 2.57
572 602 2.546778 TCTCCAACACACAACGACTTC 58.453 47.619 0.00 0.00 0.00 3.01
573 603 2.684001 TCTCCAACACACAACGACTT 57.316 45.000 0.00 0.00 0.00 3.01
574 604 2.483876 CATCTCCAACACACAACGACT 58.516 47.619 0.00 0.00 0.00 4.18
575 605 1.069906 GCATCTCCAACACACAACGAC 60.070 52.381 0.00 0.00 0.00 4.34
576 606 1.202639 AGCATCTCCAACACACAACGA 60.203 47.619 0.00 0.00 0.00 3.85
578 608 2.977405 GAGCATCTCCAACACACAAC 57.023 50.000 0.00 0.00 0.00 3.32
592 622 1.276421 ACTTGTCGTGGCTAAGAGCAT 59.724 47.619 0.21 0.00 44.75 3.79
593 623 0.679505 ACTTGTCGTGGCTAAGAGCA 59.320 50.000 0.21 0.00 44.75 4.26
594 624 1.351153 GACTTGTCGTGGCTAAGAGC 58.649 55.000 0.00 0.00 41.46 4.09
595 625 1.199327 TCGACTTGTCGTGGCTAAGAG 59.801 52.381 20.30 0.00 0.00 2.85
596 626 1.068748 GTCGACTTGTCGTGGCTAAGA 60.069 52.381 20.30 0.00 0.00 2.10
600 630 0.179094 TTTGTCGACTTGTCGTGGCT 60.179 50.000 17.92 0.00 0.00 4.75
601 631 0.653636 TTTTGTCGACTTGTCGTGGC 59.346 50.000 17.92 13.16 0.00 5.01
602 632 1.332904 GCTTTTGTCGACTTGTCGTGG 60.333 52.381 17.92 8.47 0.00 4.94
603 633 1.332904 GGCTTTTGTCGACTTGTCGTG 60.333 52.381 17.92 2.02 0.00 4.35
604 634 0.935196 GGCTTTTGTCGACTTGTCGT 59.065 50.000 17.92 0.00 0.00 4.34
605 635 0.934496 TGGCTTTTGTCGACTTGTCG 59.066 50.000 17.92 15.98 0.00 4.35
606 636 3.626028 ATTGGCTTTTGTCGACTTGTC 57.374 42.857 17.92 6.25 0.00 3.18
609 639 5.163854 CGATAGAATTGGCTTTTGTCGACTT 60.164 40.000 17.92 0.00 35.47 3.01
702 755 1.152943 TGCGGCGAGAGATAGAGGT 60.153 57.895 12.98 0.00 0.00 3.85
990 1062 1.374125 CGTCGTCATGCCTGGTTCA 60.374 57.895 0.00 0.00 0.00 3.18
1152 1225 4.047883 AGCAAGGTGGGGATCTATACTTT 58.952 43.478 0.00 0.00 0.00 2.66
1157 1230 2.053244 CAGAGCAAGGTGGGGATCTAT 58.947 52.381 0.00 0.00 0.00 1.98
1211 1284 6.532657 CCATATTCATCAAGCAAAAACTGGAC 59.467 38.462 0.00 0.00 0.00 4.02
1212 1285 6.436847 TCCATATTCATCAAGCAAAAACTGGA 59.563 34.615 0.00 0.00 0.00 3.86
1213 1286 6.632909 TCCATATTCATCAAGCAAAAACTGG 58.367 36.000 0.00 0.00 0.00 4.00
1215 1288 9.158233 CAAATCCATATTCATCAAGCAAAAACT 57.842 29.630 0.00 0.00 0.00 2.66
1257 1331 0.399091 TAGCAGCAGGGACTAGCCAT 60.399 55.000 0.00 0.00 36.02 4.40
1289 1363 1.024271 GCTGCACTTGAAACAGTGGA 58.976 50.000 0.00 0.00 43.94 4.02
1318 1392 1.714899 GATTAGCGGCCAATGCACGT 61.715 55.000 2.24 0.00 40.13 4.49
1452 1540 7.432148 ACACATACAGAACTCCATGGTTATA 57.568 36.000 12.58 0.00 0.00 0.98
1539 1627 9.199645 TGGATTTATAATTTCTCAATGGAAGCA 57.800 29.630 0.00 0.00 0.00 3.91
1596 1687 2.972348 AGGGAGGAATATGCGGTTCTA 58.028 47.619 0.00 0.00 0.00 2.10
1610 1701 6.372931 TGGAAATAATGATACCAAAGGGAGG 58.627 40.000 0.00 0.00 38.05 4.30
1616 1707 8.058235 TGGATGTCTGGAAATAATGATACCAAA 58.942 33.333 0.00 0.00 0.00 3.28
1620 1711 7.392673 AGCATGGATGTCTGGAAATAATGATAC 59.607 37.037 0.00 0.00 0.00 2.24
2236 2345 5.808042 ATTACATAACTGCTGCAGAAGTG 57.192 39.130 34.28 26.66 33.24 3.16
2260 2369 7.017651 ACACCTTATATAAAGGAATGGAGGGAG 59.982 40.741 10.67 3.30 39.81 4.30
2261 2370 6.855061 ACACCTTATATAAAGGAATGGAGGGA 59.145 38.462 10.67 0.00 39.81 4.20
2262 2371 7.091533 ACACCTTATATAAAGGAATGGAGGG 57.908 40.000 10.67 4.11 39.81 4.30
2274 2383 9.480053 GTGCCGAAACTAATACACCTTATATAA 57.520 33.333 0.00 0.00 0.00 0.98
2275 2384 7.809331 CGTGCCGAAACTAATACACCTTATATA 59.191 37.037 0.00 0.00 0.00 0.86
2276 2385 6.643770 CGTGCCGAAACTAATACACCTTATAT 59.356 38.462 0.00 0.00 0.00 0.86
2277 2386 5.978919 CGTGCCGAAACTAATACACCTTATA 59.021 40.000 0.00 0.00 0.00 0.98
2278 2387 4.807304 CGTGCCGAAACTAATACACCTTAT 59.193 41.667 0.00 0.00 0.00 1.73
2279 2388 4.175516 CGTGCCGAAACTAATACACCTTA 58.824 43.478 0.00 0.00 0.00 2.69
2280 2389 2.997986 CGTGCCGAAACTAATACACCTT 59.002 45.455 0.00 0.00 0.00 3.50
2281 2390 2.613691 CGTGCCGAAACTAATACACCT 58.386 47.619 0.00 0.00 0.00 4.00
2282 2391 1.662122 CCGTGCCGAAACTAATACACC 59.338 52.381 0.00 0.00 0.00 4.16
2283 2392 2.093152 CACCGTGCCGAAACTAATACAC 59.907 50.000 0.00 0.00 0.00 2.90
2284 2393 2.029200 TCACCGTGCCGAAACTAATACA 60.029 45.455 0.00 0.00 0.00 2.29
2285 2394 2.346545 GTCACCGTGCCGAAACTAATAC 59.653 50.000 0.00 0.00 0.00 1.89
2286 2395 2.609350 GTCACCGTGCCGAAACTAATA 58.391 47.619 0.00 0.00 0.00 0.98
2287 2396 1.435577 GTCACCGTGCCGAAACTAAT 58.564 50.000 0.00 0.00 0.00 1.73
2288 2397 0.600782 GGTCACCGTGCCGAAACTAA 60.601 55.000 0.00 0.00 0.00 2.24
2289 2398 1.005867 GGTCACCGTGCCGAAACTA 60.006 57.895 0.00 0.00 0.00 2.24
2290 2399 2.280592 GGTCACCGTGCCGAAACT 60.281 61.111 0.00 0.00 0.00 2.66
2291 2400 2.113131 CTTGGTCACCGTGCCGAAAC 62.113 60.000 0.00 0.00 0.00 2.78
2292 2401 1.890041 CTTGGTCACCGTGCCGAAA 60.890 57.895 0.00 0.00 0.00 3.46
2293 2402 2.280524 CTTGGTCACCGTGCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
2294 2403 4.308458 CCTTGGTCACCGTGCCGA 62.308 66.667 0.00 0.00 0.00 5.54
2296 2405 4.947147 TGCCTTGGTCACCGTGCC 62.947 66.667 0.00 0.00 0.00 5.01
2297 2406 3.660111 GTGCCTTGGTCACCGTGC 61.660 66.667 0.00 0.00 0.00 5.34
2298 2407 0.321210 TATGTGCCTTGGTCACCGTG 60.321 55.000 10.19 0.00 33.71 4.94
2299 2408 0.398696 TTATGTGCCTTGGTCACCGT 59.601 50.000 10.19 4.32 33.71 4.83
2300 2409 1.750193 ATTATGTGCCTTGGTCACCG 58.250 50.000 10.19 0.00 33.71 4.94
2301 2410 6.204882 GTCTATAATTATGTGCCTTGGTCACC 59.795 42.308 8.28 0.00 33.71 4.02
2302 2411 6.765989 TGTCTATAATTATGTGCCTTGGTCAC 59.234 38.462 8.28 7.09 35.14 3.67
2303 2412 6.894682 TGTCTATAATTATGTGCCTTGGTCA 58.105 36.000 8.28 0.00 0.00 4.02
2304 2413 7.801716 TTGTCTATAATTATGTGCCTTGGTC 57.198 36.000 8.28 0.00 0.00 4.02
2305 2414 7.779798 ACATTGTCTATAATTATGTGCCTTGGT 59.220 33.333 8.28 0.00 0.00 3.67
2306 2415 8.169977 ACATTGTCTATAATTATGTGCCTTGG 57.830 34.615 8.28 0.00 0.00 3.61
2308 2417 9.507329 CCTACATTGTCTATAATTATGTGCCTT 57.493 33.333 8.28 0.00 32.23 4.35
2309 2418 8.880244 TCCTACATTGTCTATAATTATGTGCCT 58.120 33.333 8.28 0.00 32.23 4.75
2310 2419 8.936864 GTCCTACATTGTCTATAATTATGTGCC 58.063 37.037 8.28 0.00 32.23 5.01
2311 2420 8.648097 CGTCCTACATTGTCTATAATTATGTGC 58.352 37.037 8.28 0.00 32.23 4.57
2312 2421 9.908152 TCGTCCTACATTGTCTATAATTATGTG 57.092 33.333 8.28 1.63 32.23 3.21
2317 2426 9.193133 CGATTTCGTCCTACATTGTCTATAATT 57.807 33.333 0.00 0.00 34.11 1.40
2318 2427 7.328737 GCGATTTCGTCCTACATTGTCTATAAT 59.671 37.037 1.55 0.00 42.22 1.28
2319 2428 6.639686 GCGATTTCGTCCTACATTGTCTATAA 59.360 38.462 1.55 0.00 42.22 0.98
2320 2429 6.016527 AGCGATTTCGTCCTACATTGTCTATA 60.017 38.462 1.55 0.00 42.22 1.31
2321 2430 4.982916 GCGATTTCGTCCTACATTGTCTAT 59.017 41.667 1.55 0.00 42.22 1.98
2322 2431 4.097437 AGCGATTTCGTCCTACATTGTCTA 59.903 41.667 1.55 0.00 42.22 2.59
2323 2432 3.119101 AGCGATTTCGTCCTACATTGTCT 60.119 43.478 1.55 0.00 42.22 3.41
2324 2433 3.187700 AGCGATTTCGTCCTACATTGTC 58.812 45.455 1.55 0.00 42.22 3.18
2325 2434 3.119101 AGAGCGATTTCGTCCTACATTGT 60.119 43.478 1.55 0.00 42.22 2.71
2326 2435 3.448686 AGAGCGATTTCGTCCTACATTG 58.551 45.455 1.55 0.00 42.22 2.82
2327 2436 3.802948 AGAGCGATTTCGTCCTACATT 57.197 42.857 1.55 0.00 42.22 2.71
2328 2437 3.448686 CAAGAGCGATTTCGTCCTACAT 58.551 45.455 1.55 0.00 42.22 2.29
2329 2438 2.416836 CCAAGAGCGATTTCGTCCTACA 60.417 50.000 1.55 0.00 42.22 2.74
2330 2439 2.194271 CCAAGAGCGATTTCGTCCTAC 58.806 52.381 1.55 0.00 42.22 3.18
2331 2440 1.470979 GCCAAGAGCGATTTCGTCCTA 60.471 52.381 1.55 0.00 42.22 2.94
2332 2441 0.741221 GCCAAGAGCGATTTCGTCCT 60.741 55.000 1.55 0.00 42.22 3.85
2333 2442 1.716172 GCCAAGAGCGATTTCGTCC 59.284 57.895 1.55 0.00 42.22 4.79
2343 2452 7.385205 TCGATAATCAACTAATTAGCCAAGAGC 59.615 37.037 12.54 0.00 44.25 4.09
2344 2453 8.704234 GTCGATAATCAACTAATTAGCCAAGAG 58.296 37.037 12.54 0.00 0.00 2.85
2345 2454 8.201464 TGTCGATAATCAACTAATTAGCCAAGA 58.799 33.333 12.54 5.91 0.00 3.02
2346 2455 8.365399 TGTCGATAATCAACTAATTAGCCAAG 57.635 34.615 12.54 0.63 0.00 3.61
2347 2456 8.725405 TTGTCGATAATCAACTAATTAGCCAA 57.275 30.769 12.54 0.00 0.00 4.52
2348 2457 7.985184 ACTTGTCGATAATCAACTAATTAGCCA 59.015 33.333 12.54 0.00 0.00 4.75
2349 2458 8.366671 ACTTGTCGATAATCAACTAATTAGCC 57.633 34.615 12.54 0.00 0.00 3.93
2382 2491 9.107177 CGTGTATCTCTTCCTTTACTAGTCTAA 57.893 37.037 0.00 0.00 0.00 2.10
2383 2492 7.226325 GCGTGTATCTCTTCCTTTACTAGTCTA 59.774 40.741 0.00 0.00 0.00 2.59
2384 2493 6.038492 GCGTGTATCTCTTCCTTTACTAGTCT 59.962 42.308 0.00 0.00 0.00 3.24
2385 2494 6.183360 TGCGTGTATCTCTTCCTTTACTAGTC 60.183 42.308 0.00 0.00 0.00 2.59
2386 2495 5.651139 TGCGTGTATCTCTTCCTTTACTAGT 59.349 40.000 0.00 0.00 0.00 2.57
2387 2496 6.132791 TGCGTGTATCTCTTCCTTTACTAG 57.867 41.667 0.00 0.00 0.00 2.57
2388 2497 6.519679 TTGCGTGTATCTCTTCCTTTACTA 57.480 37.500 0.00 0.00 0.00 1.82
2389 2498 5.401531 TTGCGTGTATCTCTTCCTTTACT 57.598 39.130 0.00 0.00 0.00 2.24
2390 2499 5.051641 CGATTGCGTGTATCTCTTCCTTTAC 60.052 44.000 0.00 0.00 0.00 2.01
2391 2500 5.041287 CGATTGCGTGTATCTCTTCCTTTA 58.959 41.667 0.00 0.00 0.00 1.85
2392 2501 3.865745 CGATTGCGTGTATCTCTTCCTTT 59.134 43.478 0.00 0.00 0.00 3.11
2393 2502 3.130516 TCGATTGCGTGTATCTCTTCCTT 59.869 43.478 0.00 0.00 38.98 3.36
2394 2503 2.688446 TCGATTGCGTGTATCTCTTCCT 59.312 45.455 0.00 0.00 38.98 3.36
2395 2504 3.046390 CTCGATTGCGTGTATCTCTTCC 58.954 50.000 0.00 0.00 38.98 3.46
2396 2505 3.953766 TCTCGATTGCGTGTATCTCTTC 58.046 45.455 0.00 0.00 38.98 2.87
2397 2506 3.628032 TCTCTCGATTGCGTGTATCTCTT 59.372 43.478 0.00 0.00 38.98 2.85
2398 2507 3.206964 TCTCTCGATTGCGTGTATCTCT 58.793 45.455 0.00 0.00 38.98 3.10
2399 2508 3.248841 TCTCTCTCGATTGCGTGTATCTC 59.751 47.826 0.00 0.00 38.98 2.75
2400 2509 3.206964 TCTCTCTCGATTGCGTGTATCT 58.793 45.455 0.00 0.00 38.98 1.98
2401 2510 3.248841 TCTCTCTCTCGATTGCGTGTATC 59.751 47.826 0.00 0.00 38.98 2.24
2402 2511 3.206964 TCTCTCTCTCGATTGCGTGTAT 58.793 45.455 0.00 0.00 38.98 2.29
2403 2512 2.629051 TCTCTCTCTCGATTGCGTGTA 58.371 47.619 0.00 0.00 38.98 2.90
2404 2513 1.454201 TCTCTCTCTCGATTGCGTGT 58.546 50.000 0.00 0.00 38.98 4.49
2405 2514 2.772568 ATCTCTCTCTCGATTGCGTG 57.227 50.000 0.00 0.00 38.98 5.34
2406 2515 3.472652 AGTATCTCTCTCTCGATTGCGT 58.527 45.455 0.00 0.00 38.98 5.24
2407 2516 4.481930 AAGTATCTCTCTCTCGATTGCG 57.518 45.455 0.00 0.00 39.35 4.85
2408 2517 5.009610 AGGAAAGTATCTCTCTCTCGATTGC 59.990 44.000 0.00 0.00 0.00 3.56
2409 2518 6.633500 AGGAAAGTATCTCTCTCTCGATTG 57.367 41.667 0.00 0.00 0.00 2.67
2410 2519 7.654022 AAAGGAAAGTATCTCTCTCTCGATT 57.346 36.000 0.00 0.00 0.00 3.34
2411 2520 7.654022 AAAAGGAAAGTATCTCTCTCTCGAT 57.346 36.000 0.00 0.00 0.00 3.59
2412 2521 7.469537 AAAAAGGAAAGTATCTCTCTCTCGA 57.530 36.000 0.00 0.00 0.00 4.04
2457 2566 9.920946 AAGGAAAGTATATTTCTCCTAATTGCA 57.079 29.630 10.14 0.00 35.41 4.08
2464 2573 9.467796 CCAGAAAAAGGAAAGTATATTTCTCCT 57.532 33.333 0.00 6.13 38.17 3.69
2465 2574 9.462606 TCCAGAAAAAGGAAAGTATATTTCTCC 57.537 33.333 0.00 5.10 35.56 3.71
2467 2576 9.467796 CCTCCAGAAAAAGGAAAGTATATTTCT 57.532 33.333 0.86 0.00 37.54 2.52
2468 2577 8.687242 CCCTCCAGAAAAAGGAAAGTATATTTC 58.313 37.037 0.00 0.00 34.35 2.17
2469 2578 8.177456 ACCCTCCAGAAAAAGGAAAGTATATTT 58.823 33.333 0.00 0.00 34.35 1.40
2470 2579 7.709601 ACCCTCCAGAAAAAGGAAAGTATATT 58.290 34.615 0.00 0.00 34.35 1.28
2471 2580 7.285340 ACCCTCCAGAAAAAGGAAAGTATAT 57.715 36.000 0.00 0.00 34.35 0.86
2472 2581 6.713731 ACCCTCCAGAAAAAGGAAAGTATA 57.286 37.500 0.00 0.00 34.35 1.47
2473 2582 5.600669 ACCCTCCAGAAAAAGGAAAGTAT 57.399 39.130 0.00 0.00 34.35 2.12
2474 2583 5.397553 AACCCTCCAGAAAAAGGAAAGTA 57.602 39.130 0.00 0.00 34.35 2.24
2475 2584 3.973472 ACCCTCCAGAAAAAGGAAAGT 57.027 42.857 0.00 0.00 34.35 2.66
2476 2585 6.724893 TTTAACCCTCCAGAAAAAGGAAAG 57.275 37.500 0.00 0.00 34.35 2.62
2477 2586 6.407639 GCTTTTAACCCTCCAGAAAAAGGAAA 60.408 38.462 7.67 0.00 37.53 3.13
2478 2587 5.069914 GCTTTTAACCCTCCAGAAAAAGGAA 59.930 40.000 7.67 0.00 37.53 3.36
2479 2588 4.587262 GCTTTTAACCCTCCAGAAAAAGGA 59.413 41.667 7.67 0.00 37.53 3.36
2480 2589 4.558697 CGCTTTTAACCCTCCAGAAAAAGG 60.559 45.833 7.67 0.00 37.53 3.11
2481 2590 4.546570 CGCTTTTAACCCTCCAGAAAAAG 58.453 43.478 0.00 0.00 39.18 2.27
2482 2591 3.319689 CCGCTTTTAACCCTCCAGAAAAA 59.680 43.478 0.00 0.00 0.00 1.94
2483 2592 2.888414 CCGCTTTTAACCCTCCAGAAAA 59.112 45.455 0.00 0.00 0.00 2.29
2484 2593 2.106857 TCCGCTTTTAACCCTCCAGAAA 59.893 45.455 0.00 0.00 0.00 2.52
2485 2594 1.700739 TCCGCTTTTAACCCTCCAGAA 59.299 47.619 0.00 0.00 0.00 3.02
2486 2595 1.354101 TCCGCTTTTAACCCTCCAGA 58.646 50.000 0.00 0.00 0.00 3.86
2487 2596 2.194201 TTCCGCTTTTAACCCTCCAG 57.806 50.000 0.00 0.00 0.00 3.86
2488 2597 2.891191 ATTCCGCTTTTAACCCTCCA 57.109 45.000 0.00 0.00 0.00 3.86
2489 2598 3.630769 CCTAATTCCGCTTTTAACCCTCC 59.369 47.826 0.00 0.00 0.00 4.30
2490 2599 4.520179 TCCTAATTCCGCTTTTAACCCTC 58.480 43.478 0.00 0.00 0.00 4.30
2491 2600 4.579647 TCCTAATTCCGCTTTTAACCCT 57.420 40.909 0.00 0.00 0.00 4.34
2492 2601 4.885325 TCATCCTAATTCCGCTTTTAACCC 59.115 41.667 0.00 0.00 0.00 4.11
2493 2602 6.445357 TTCATCCTAATTCCGCTTTTAACC 57.555 37.500 0.00 0.00 0.00 2.85
2494 2603 9.665264 CTAATTCATCCTAATTCCGCTTTTAAC 57.335 33.333 0.00 0.00 31.63 2.01
2495 2604 9.621629 TCTAATTCATCCTAATTCCGCTTTTAA 57.378 29.630 0.00 0.00 31.63 1.52
2496 2605 9.621629 TTCTAATTCATCCTAATTCCGCTTTTA 57.378 29.630 0.00 0.00 31.63 1.52
2497 2606 8.519799 TTCTAATTCATCCTAATTCCGCTTTT 57.480 30.769 0.00 0.00 31.63 2.27
2498 2607 7.993183 TCTTCTAATTCATCCTAATTCCGCTTT 59.007 33.333 0.00 0.00 31.63 3.51
2499 2608 7.509546 TCTTCTAATTCATCCTAATTCCGCTT 58.490 34.615 0.00 0.00 31.63 4.68
2500 2609 7.067496 TCTTCTAATTCATCCTAATTCCGCT 57.933 36.000 0.00 0.00 31.63 5.52
2501 2610 7.730364 TTCTTCTAATTCATCCTAATTCCGC 57.270 36.000 0.00 0.00 31.63 5.54
2503 2612 9.905171 GCATTTCTTCTAATTCATCCTAATTCC 57.095 33.333 0.00 0.00 31.63 3.01
2506 2615 8.854117 GGTGCATTTCTTCTAATTCATCCTAAT 58.146 33.333 0.00 0.00 0.00 1.73
2507 2616 8.055181 AGGTGCATTTCTTCTAATTCATCCTAA 58.945 33.333 0.00 0.00 0.00 2.69
2508 2617 7.577303 AGGTGCATTTCTTCTAATTCATCCTA 58.423 34.615 0.00 0.00 0.00 2.94
2509 2618 6.430007 AGGTGCATTTCTTCTAATTCATCCT 58.570 36.000 0.00 0.00 0.00 3.24
2510 2619 6.705863 AGGTGCATTTCTTCTAATTCATCC 57.294 37.500 0.00 0.00 0.00 3.51
2511 2620 8.677300 TGTAAGGTGCATTTCTTCTAATTCATC 58.323 33.333 0.00 0.00 0.00 2.92
2512 2621 8.579850 TGTAAGGTGCATTTCTTCTAATTCAT 57.420 30.769 0.00 0.00 0.00 2.57
2513 2622 7.994425 TGTAAGGTGCATTTCTTCTAATTCA 57.006 32.000 0.00 0.00 0.00 2.57
2514 2623 9.860898 AAATGTAAGGTGCATTTCTTCTAATTC 57.139 29.630 0.00 0.00 41.13 2.17
2516 2625 9.643693 CAAAATGTAAGGTGCATTTCTTCTAAT 57.356 29.630 5.03 0.00 43.30 1.73
2517 2626 8.087750 CCAAAATGTAAGGTGCATTTCTTCTAA 58.912 33.333 5.03 0.00 43.30 2.10
2518 2627 7.450014 TCCAAAATGTAAGGTGCATTTCTTCTA 59.550 33.333 5.03 0.00 43.30 2.10
2519 2628 6.267471 TCCAAAATGTAAGGTGCATTTCTTCT 59.733 34.615 5.03 0.00 43.30 2.85
2520 2629 6.454795 TCCAAAATGTAAGGTGCATTTCTTC 58.545 36.000 5.03 0.00 43.30 2.87
2521 2630 6.418057 TCCAAAATGTAAGGTGCATTTCTT 57.582 33.333 5.03 0.00 43.30 2.52
2522 2631 6.418057 TTCCAAAATGTAAGGTGCATTTCT 57.582 33.333 5.03 0.00 43.30 2.52
2523 2632 7.671495 AATTCCAAAATGTAAGGTGCATTTC 57.329 32.000 5.03 0.00 43.30 2.17
2524 2633 8.462589 AAAATTCCAAAATGTAAGGTGCATTT 57.537 26.923 0.00 0.00 45.21 2.32
2525 2634 9.737844 ATAAAATTCCAAAATGTAAGGTGCATT 57.262 25.926 0.00 0.00 38.09 3.56
2526 2635 9.382275 GATAAAATTCCAAAATGTAAGGTGCAT 57.618 29.630 0.00 0.00 0.00 3.96
2527 2636 8.370940 TGATAAAATTCCAAAATGTAAGGTGCA 58.629 29.630 0.00 0.00 0.00 4.57
2528 2637 8.770438 TGATAAAATTCCAAAATGTAAGGTGC 57.230 30.769 0.00 0.00 0.00 5.01
2558 2667 9.333724 CCGTTCCTTTATATAAGGTGTATTTGT 57.666 33.333 4.13 0.00 38.55 2.83
2559 2668 9.550406 TCCGTTCCTTTATATAAGGTGTATTTG 57.450 33.333 4.13 0.00 38.55 2.32
2560 2669 9.774413 CTCCGTTCCTTTATATAAGGTGTATTT 57.226 33.333 4.13 0.00 38.55 1.40
2561 2670 8.373220 CCTCCGTTCCTTTATATAAGGTGTATT 58.627 37.037 4.13 0.00 38.55 1.89
2562 2671 7.038516 CCCTCCGTTCCTTTATATAAGGTGTAT 60.039 40.741 4.13 0.00 38.55 2.29
2563 2672 6.268387 CCCTCCGTTCCTTTATATAAGGTGTA 59.732 42.308 4.13 0.00 38.55 2.90
2564 2673 5.071384 CCCTCCGTTCCTTTATATAAGGTGT 59.929 44.000 4.13 0.00 38.55 4.16
2565 2674 5.306160 TCCCTCCGTTCCTTTATATAAGGTG 59.694 44.000 4.13 0.00 38.55 4.00
2566 2675 5.470501 TCCCTCCGTTCCTTTATATAAGGT 58.529 41.667 4.13 0.00 38.55 3.50
2567 2676 5.543020 ACTCCCTCCGTTCCTTTATATAAGG 59.457 44.000 0.00 0.00 38.78 2.69
2568 2677 6.667558 ACTCCCTCCGTTCCTTTATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2571 2680 9.643735 CTATATACTCCCTCCGTTCCTTTATAT 57.356 37.037 0.00 0.00 0.00 0.86
2572 2681 8.618385 ACTATATACTCCCTCCGTTCCTTTATA 58.382 37.037 0.00 0.00 0.00 0.98
2573 2682 7.477008 ACTATATACTCCCTCCGTTCCTTTAT 58.523 38.462 0.00 0.00 0.00 1.40
2574 2683 6.856757 ACTATATACTCCCTCCGTTCCTTTA 58.143 40.000 0.00 0.00 0.00 1.85
2575 2684 5.713807 ACTATATACTCCCTCCGTTCCTTT 58.286 41.667 0.00 0.00 0.00 3.11
2576 2685 5.336491 ACTATATACTCCCTCCGTTCCTT 57.664 43.478 0.00 0.00 0.00 3.36
2577 2686 6.045341 AGTTACTATATACTCCCTCCGTTCCT 59.955 42.308 0.00 0.00 0.00 3.36
2578 2687 6.150809 CAGTTACTATATACTCCCTCCGTTCC 59.849 46.154 0.00 0.00 0.00 3.62
2579 2688 6.150809 CCAGTTACTATATACTCCCTCCGTTC 59.849 46.154 0.00 0.00 0.00 3.95
2580 2689 6.008960 CCAGTTACTATATACTCCCTCCGTT 58.991 44.000 0.00 0.00 0.00 4.44
2581 2690 5.311649 TCCAGTTACTATATACTCCCTCCGT 59.688 44.000 0.00 0.00 0.00 4.69
2582 2691 5.647225 GTCCAGTTACTATATACTCCCTCCG 59.353 48.000 0.00 0.00 0.00 4.63
2583 2692 6.792424 AGTCCAGTTACTATATACTCCCTCC 58.208 44.000 0.00 0.00 0.00 4.30
2584 2693 9.230122 GTTAGTCCAGTTACTATATACTCCCTC 57.770 40.741 0.00 0.00 32.16 4.30
2585 2694 8.730948 TGTTAGTCCAGTTACTATATACTCCCT 58.269 37.037 0.00 0.00 32.16 4.20
2586 2695 8.791675 GTGTTAGTCCAGTTACTATATACTCCC 58.208 40.741 0.00 0.00 32.16 4.30
2587 2696 9.571816 AGTGTTAGTCCAGTTACTATATACTCC 57.428 37.037 0.00 0.00 32.16 3.85
2592 2701 9.869667 ATCTCAGTGTTAGTCCAGTTACTATAT 57.130 33.333 0.00 0.00 32.16 0.86
2607 2716 7.311092 TCAAAAGTAAGGGATCTCAGTGTTA 57.689 36.000 0.00 0.00 0.00 2.41
2717 2826 3.564511 CAAAACTGAATAGTTGGGCACG 58.435 45.455 0.00 0.00 46.14 5.34
2721 2830 3.573967 AGTGGCAAAACTGAATAGTTGGG 59.426 43.478 0.00 0.00 46.14 4.12
2800 2909 4.082190 GCTGACAGTAATGGTGTCTAGTGA 60.082 45.833 3.99 0.00 44.02 3.41
3093 3269 4.142622 CCGTGAGATGCTTGCTCAAAAATA 60.143 41.667 0.00 0.00 43.39 1.40
3141 3317 9.628500 ACTACTCAGTTTTTCCATTAGAAGTTT 57.372 29.630 0.00 0.00 35.40 2.66
3315 3498 9.925268 ACGTTAATTAAGTTGTTCAAACAGTAG 57.075 29.630 0.00 0.00 40.50 2.57
3372 3555 7.500992 AGAATTCAAAGTACTGAACTCTGTCA 58.499 34.615 8.44 0.00 39.68 3.58
3510 3693 6.728164 AGATGGCATAGTCATATTAGGTCACT 59.272 38.462 0.00 0.00 0.00 3.41
3520 3703 6.064060 CCTGGAAAAAGATGGCATAGTCATA 58.936 40.000 0.00 0.00 0.00 2.15
3955 4141 7.898014 TCAAGAAGATGCTACCAGATAAGTA 57.102 36.000 0.00 0.00 0.00 2.24
4004 4190 4.199310 GGCATAATTAGAGGAACAGTGCA 58.801 43.478 4.77 0.00 0.00 4.57
4016 4202 8.812513 TTTGATCCCTATCATGGCATAATTAG 57.187 34.615 0.00 1.79 41.73 1.73
4060 4246 6.155827 CGTCAAATATGCAAAGGGAAAAGAA 58.844 36.000 0.00 0.00 0.00 2.52
4061 4247 5.708948 CGTCAAATATGCAAAGGGAAAAGA 58.291 37.500 0.00 0.00 0.00 2.52
4274 4460 7.230510 AGCAAAGGTAACAGTTGAAACATATGA 59.769 33.333 10.38 0.00 36.30 2.15
4674 4872 1.978580 AGTCCCTGTTGGTCTAGTTGG 59.021 52.381 0.00 0.00 30.02 3.77
4675 4873 3.771577 AAGTCCCTGTTGGTCTAGTTG 57.228 47.619 0.00 0.00 31.72 3.16
4700 4898 0.106419 TGTGTCTGGGTTGTTTCCCC 60.106 55.000 0.00 0.00 46.48 4.81
4702 4900 1.404035 GTGTGTGTCTGGGTTGTTTCC 59.596 52.381 0.00 0.00 0.00 3.13
4720 4937 2.159819 CTCCAGAGGGTGTGTCCGTG 62.160 65.000 0.00 0.00 37.00 4.94
4721 4938 1.908793 CTCCAGAGGGTGTGTCCGT 60.909 63.158 0.00 0.00 37.00 4.69
4722 4939 2.973899 CTCCAGAGGGTGTGTCCG 59.026 66.667 0.00 0.00 37.00 4.79
4723 4940 2.665603 GCTCCAGAGGGTGTGTCC 59.334 66.667 0.00 0.00 34.93 4.02
4724 4941 2.665603 GGCTCCAGAGGGTGTGTC 59.334 66.667 0.00 0.00 34.93 3.67
4725 4942 3.314331 CGGCTCCAGAGGGTGTGT 61.314 66.667 0.00 0.00 34.93 3.72
4726 4943 2.513026 CTTCGGCTCCAGAGGGTGTG 62.513 65.000 0.00 0.00 34.93 3.82
4727 4944 2.203788 TTCGGCTCCAGAGGGTGT 60.204 61.111 0.00 0.00 34.93 4.16
4742 4959 0.890683 CCACCCATGTTCAAGCCTTC 59.109 55.000 0.00 0.00 0.00 3.46
4749 4966 2.283101 GCCTGCCACCCATGTTCA 60.283 61.111 0.00 0.00 0.00 3.18
4812 5029 1.221021 GTCGGGATGTGGGGAACTC 59.779 63.158 0.00 0.00 0.00 3.01
4828 5045 6.701400 ACCTAAAATGTCAAAGCACAAATGTC 59.299 34.615 0.00 0.00 0.00 3.06
4961 5200 1.344438 GGCTTTTCCTTTGGTCTTGGG 59.656 52.381 0.00 0.00 0.00 4.12
5047 5288 3.612423 GTGAGTGCAAAACAAAGGAACAC 59.388 43.478 0.00 0.00 0.00 3.32
5068 5309 1.833787 AAGGCCCGTTCGGTACATGT 61.834 55.000 2.69 2.69 0.00 3.21
5349 5707 2.832838 TGCTTCTGAGATCCTGGGTTA 58.167 47.619 0.00 0.00 0.00 2.85
5634 5992 1.212490 CATCATGTTTTGCGGCGGT 59.788 52.632 9.78 0.00 0.00 5.68
5703 6061 1.836391 CATATTGGGAGGTGGCGGA 59.164 57.895 0.00 0.00 0.00 5.54
5841 6199 3.866449 GCGCCAAATTAACCCAAAATGGA 60.866 43.478 0.00 0.00 40.96 3.41
5842 6200 2.418280 GCGCCAAATTAACCCAAAATGG 59.582 45.455 0.00 0.00 37.25 3.16
5844 6202 2.342179 CGCGCCAAATTAACCCAAAAT 58.658 42.857 0.00 0.00 0.00 1.82
5846 6204 0.667792 GCGCGCCAAATTAACCCAAA 60.668 50.000 23.24 0.00 0.00 3.28
5996 6358 2.428187 CCACACAAGGCGGGTACA 59.572 61.111 0.00 0.00 0.00 2.90
6002 6364 3.663176 CAGCACCCACACAAGGCG 61.663 66.667 0.00 0.00 0.00 5.52
6057 6419 7.488187 ACAATGTAATGATGACATAGCAGAC 57.512 36.000 0.00 0.00 36.50 3.51
6066 6428 9.366216 TGTCAGTAGTAACAATGTAATGATGAC 57.634 33.333 9.24 9.24 33.28 3.06
6093 6455 4.020662 GGGGCCTGTTTAAAAACATGATCA 60.021 41.667 13.04 0.00 46.71 2.92
6094 6456 4.222810 AGGGGCCTGTTTAAAAACATGATC 59.777 41.667 13.04 5.89 46.71 2.92
6098 6460 2.637382 CCAGGGGCCTGTTTAAAAACAT 59.363 45.455 0.84 0.00 46.71 2.71
6105 6467 1.080638 AATGACCAGGGGCCTGTTTA 58.919 50.000 0.84 0.00 42.15 2.01
6137 6499 6.567687 TTCATGAAAATAGCCGAAAGTTGA 57.432 33.333 5.45 0.00 0.00 3.18
6146 6508 7.865385 TGTGTTACTTGTTTCATGAAAATAGCC 59.135 33.333 22.07 10.22 31.33 3.93
6150 6512 8.550376 GCATTGTGTTACTTGTTTCATGAAAAT 58.450 29.630 22.07 10.78 31.33 1.82
6166 6528 8.177119 ACCTTGATAGAAAAAGCATTGTGTTA 57.823 30.769 0.00 0.00 0.00 2.41
6167 6529 7.054491 ACCTTGATAGAAAAAGCATTGTGTT 57.946 32.000 0.00 0.00 0.00 3.32
6186 6548 8.977505 CATGTTTTTCAACCTAACAATACCTTG 58.022 33.333 0.00 0.00 35.62 3.61
6187 6549 8.700973 ACATGTTTTTCAACCTAACAATACCTT 58.299 29.630 0.00 0.00 35.62 3.50
6188 6550 8.245195 ACATGTTTTTCAACCTAACAATACCT 57.755 30.769 0.00 0.00 35.62 3.08
6189 6551 8.880878 AACATGTTTTTCAACCTAACAATACC 57.119 30.769 4.92 0.00 35.62 2.73
6194 6556 5.582665 GCCAAACATGTTTTTCAACCTAACA 59.417 36.000 21.10 0.00 36.35 2.41
6195 6557 5.815222 AGCCAAACATGTTTTTCAACCTAAC 59.185 36.000 21.10 2.27 31.02 2.34
6196 6558 5.814705 CAGCCAAACATGTTTTTCAACCTAA 59.185 36.000 21.10 0.00 31.02 2.69
6197 6559 5.105146 ACAGCCAAACATGTTTTTCAACCTA 60.105 36.000 21.10 0.00 31.02 3.08
6198 6560 4.190772 CAGCCAAACATGTTTTTCAACCT 58.809 39.130 21.10 8.33 31.02 3.50
6199 6561 3.938334 ACAGCCAAACATGTTTTTCAACC 59.062 39.130 21.10 6.36 31.02 3.77
6200 6562 4.727448 GCACAGCCAAACATGTTTTTCAAC 60.727 41.667 21.10 8.97 0.00 3.18
6201 6563 3.373439 GCACAGCCAAACATGTTTTTCAA 59.627 39.130 21.10 0.00 0.00 2.69
6202 6564 2.935201 GCACAGCCAAACATGTTTTTCA 59.065 40.909 21.10 0.00 0.00 2.69
6203 6565 2.033832 CGCACAGCCAAACATGTTTTTC 60.034 45.455 21.10 14.80 0.00 2.29
6204 6566 1.932511 CGCACAGCCAAACATGTTTTT 59.067 42.857 21.10 7.43 0.00 1.94
6205 6567 1.134848 ACGCACAGCCAAACATGTTTT 60.135 42.857 21.10 4.59 0.00 2.43
6206 6568 0.459489 ACGCACAGCCAAACATGTTT 59.541 45.000 18.13 18.13 0.00 2.83
6207 6569 0.459489 AACGCACAGCCAAACATGTT 59.541 45.000 4.92 4.92 0.00 2.71
6208 6570 0.459489 AAACGCACAGCCAAACATGT 59.541 45.000 0.00 0.00 0.00 3.21
6209 6571 2.414058 TAAACGCACAGCCAAACATG 57.586 45.000 0.00 0.00 0.00 3.21
6210 6572 2.556189 TCATAAACGCACAGCCAAACAT 59.444 40.909 0.00 0.00 0.00 2.71
6211 6573 1.950216 TCATAAACGCACAGCCAAACA 59.050 42.857 0.00 0.00 0.00 2.83
6212 6574 2.697431 TCATAAACGCACAGCCAAAC 57.303 45.000 0.00 0.00 0.00 2.93
6213 6575 3.932545 ATTCATAAACGCACAGCCAAA 57.067 38.095 0.00 0.00 0.00 3.28
6214 6576 5.157781 GTTTATTCATAAACGCACAGCCAA 58.842 37.500 6.67 0.00 41.61 4.52
6215 6577 4.728534 GTTTATTCATAAACGCACAGCCA 58.271 39.130 6.67 0.00 41.61 4.75
6225 6587 4.358494 CGCCCAACGGTTTATTCATAAA 57.642 40.909 0.00 0.00 38.44 1.40
6239 6601 0.464452 ACTATAGCCTGACGCCCAAC 59.536 55.000 0.00 0.00 38.78 3.77
6240 6602 0.464036 CACTATAGCCTGACGCCCAA 59.536 55.000 0.00 0.00 38.78 4.12
6241 6603 0.686441 ACACTATAGCCTGACGCCCA 60.686 55.000 0.00 0.00 38.78 5.36
6242 6604 0.464452 AACACTATAGCCTGACGCCC 59.536 55.000 0.00 0.00 38.78 6.13
6243 6605 1.933853 CAAACACTATAGCCTGACGCC 59.066 52.381 0.00 0.00 38.78 5.68
6244 6606 1.327764 GCAAACACTATAGCCTGACGC 59.672 52.381 0.00 0.00 37.98 5.19
6245 6607 2.893637 AGCAAACACTATAGCCTGACG 58.106 47.619 0.00 0.00 0.00 4.35
6246 6608 3.804873 GCTAGCAAACACTATAGCCTGAC 59.195 47.826 10.63 0.00 35.65 3.51
6247 6609 3.450817 TGCTAGCAAACACTATAGCCTGA 59.549 43.478 16.84 0.00 39.90 3.86
6248 6610 3.557595 GTGCTAGCAAACACTATAGCCTG 59.442 47.826 21.29 0.00 39.90 4.85
6249 6611 3.432326 GGTGCTAGCAAACACTATAGCCT 60.432 47.826 21.29 0.00 39.90 4.58
6250 6612 2.872858 GGTGCTAGCAAACACTATAGCC 59.127 50.000 21.29 8.51 39.90 3.93
6251 6613 2.872858 GGGTGCTAGCAAACACTATAGC 59.127 50.000 21.29 2.25 40.81 2.97
6252 6614 3.871594 GTGGGTGCTAGCAAACACTATAG 59.128 47.826 30.75 0.00 36.99 1.31
6253 6615 3.370103 GGTGGGTGCTAGCAAACACTATA 60.370 47.826 33.66 11.10 36.99 1.31
6289 8193 8.912988 TCCAAAGAGACTGTCATTAAACAAAAT 58.087 29.630 10.88 0.00 0.00 1.82
6295 8199 6.003326 TGCATCCAAAGAGACTGTCATTAAA 58.997 36.000 10.88 0.00 0.00 1.52
6350 8255 7.765695 AATCTCAGCCAAAGAAGAAAATACA 57.234 32.000 0.00 0.00 0.00 2.29
6351 8256 8.730680 TGTAATCTCAGCCAAAGAAGAAAATAC 58.269 33.333 0.00 0.00 0.00 1.89
6352 8257 8.862325 TGTAATCTCAGCCAAAGAAGAAAATA 57.138 30.769 0.00 0.00 0.00 1.40
6398 8315 5.396362 GTGACAAAGTTCATTCATTCGTGTG 59.604 40.000 0.00 0.00 0.00 3.82
6399 8316 5.065859 TGTGACAAAGTTCATTCATTCGTGT 59.934 36.000 0.00 0.00 0.00 4.49
6438 8355 4.157656 TGTGTTGGAATATTGCAAGGTAGC 59.842 41.667 21.14 10.66 39.20 3.58
6477 8394 1.341285 CCACCATCACCATGTCCATGT 60.341 52.381 6.53 0.00 37.11 3.21
6479 8396 0.259647 CCCACCATCACCATGTCCAT 59.740 55.000 0.00 0.00 0.00 3.41
6480 8397 1.139498 ACCCACCATCACCATGTCCA 61.139 55.000 0.00 0.00 0.00 4.02
6481 8398 0.916086 TACCCACCATCACCATGTCC 59.084 55.000 0.00 0.00 0.00 4.02
6482 8399 2.439507 AGATACCCACCATCACCATGTC 59.560 50.000 0.00 0.00 0.00 3.06
6483 8400 2.492025 AGATACCCACCATCACCATGT 58.508 47.619 0.00 0.00 0.00 3.21
6484 8401 4.916041 ATAGATACCCACCATCACCATG 57.084 45.455 0.00 0.00 0.00 3.66
6485 8402 7.906736 AGTAATATAGATACCCACCATCACCAT 59.093 37.037 0.00 0.00 0.00 3.55
6486 8403 7.180229 CAGTAATATAGATACCCACCATCACCA 59.820 40.741 0.00 0.00 0.00 4.17
6487 8404 7.556844 CAGTAATATAGATACCCACCATCACC 58.443 42.308 0.00 0.00 0.00 4.02
6488 8405 7.042335 GCAGTAATATAGATACCCACCATCAC 58.958 42.308 0.00 0.00 0.00 3.06
6489 8406 6.959954 AGCAGTAATATAGATACCCACCATCA 59.040 38.462 0.00 0.00 0.00 3.07
6490 8407 7.268586 CAGCAGTAATATAGATACCCACCATC 58.731 42.308 0.00 0.00 0.00 3.51
6501 8418 8.595362 ACATATGTAGGCAGCAGTAATATAGA 57.405 34.615 6.56 0.00 0.00 1.98
6509 8426 1.417890 GGGACATATGTAGGCAGCAGT 59.582 52.381 8.71 0.00 0.00 4.40
6520 8437 5.817816 GGAAAGTTGACACTAGGGACATATG 59.182 44.000 0.00 0.00 30.68 1.78
6521 8438 5.104485 GGGAAAGTTGACACTAGGGACATAT 60.104 44.000 0.00 0.00 30.68 1.78
6522 8439 4.224370 GGGAAAGTTGACACTAGGGACATA 59.776 45.833 0.00 0.00 30.68 2.29
6523 8440 3.009143 GGGAAAGTTGACACTAGGGACAT 59.991 47.826 0.00 0.00 30.68 3.06
6524 8441 2.370849 GGGAAAGTTGACACTAGGGACA 59.629 50.000 0.00 0.00 30.68 4.02
6525 8442 2.290134 GGGGAAAGTTGACACTAGGGAC 60.290 54.545 0.00 0.00 30.68 4.46
6533 8450 4.867086 AGAAAAAGAGGGGAAAGTTGACA 58.133 39.130 0.00 0.00 0.00 3.58
6544 8461 3.698289 GGGGAAAGGTAGAAAAAGAGGG 58.302 50.000 0.00 0.00 0.00 4.30
6585 8503 5.487433 TCGATTGAGACATAACACATGGTT 58.513 37.500 0.00 1.10 43.62 3.67
6586 8504 5.084818 TCGATTGAGACATAACACATGGT 57.915 39.130 0.00 0.00 0.00 3.55
6587 8505 5.111989 ACTCGATTGAGACATAACACATGG 58.888 41.667 17.27 0.00 45.57 3.66
6588 8506 6.038985 AGACTCGATTGAGACATAACACATG 58.961 40.000 17.27 0.00 45.57 3.21
6589 8507 6.214191 AGACTCGATTGAGACATAACACAT 57.786 37.500 17.27 0.00 45.57 3.21
6594 8512 7.625828 TCTGTAAGACTCGATTGAGACATAA 57.374 36.000 17.27 0.00 45.49 1.90
6617 8535 4.164843 TGGTTCTTGCCCTAATATGGTC 57.835 45.455 0.00 0.00 0.00 4.02
6619 8537 4.956075 ACTTTGGTTCTTGCCCTAATATGG 59.044 41.667 0.00 0.00 0.00 2.74
6628 8546 3.303791 CGTTGACTACTTTGGTTCTTGCC 60.304 47.826 0.00 0.00 0.00 4.52
6675 8593 2.425592 CCAATAGCGGCCATCGGA 59.574 61.111 2.24 0.00 39.69 4.55
6710 8628 0.746923 GGAGGCAACGGGTATGGTTC 60.747 60.000 0.00 0.00 46.39 3.62
6711 8629 1.301954 GGAGGCAACGGGTATGGTT 59.698 57.895 0.00 0.00 46.39 3.67
6730 8648 2.930562 GGTGGGAGTGCAGGAGGT 60.931 66.667 0.00 0.00 0.00 3.85
6766 8684 1.468054 GCGTACGTCGGGTTCAACTAT 60.468 52.381 17.90 0.00 40.26 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.