Multiple sequence alignment - TraesCS1B01G159900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G159900 chr1B 100.000 4468 0 0 1 4468 272882123 272877656 0.000000e+00 8251.0
1 TraesCS1B01G159900 chr1B 97.025 706 20 1 1 706 183065374 183064670 0.000000e+00 1186.0
2 TraesCS1B01G159900 chr1B 92.683 328 21 3 4137 4462 687274667 687274993 1.880000e-128 470.0
3 TraesCS1B01G159900 chr1B 91.867 332 24 3 4137 4466 648108570 648108240 1.130000e-125 460.0
4 TraesCS1B01G159900 chr1A 92.492 2544 84 54 707 3182 246693226 246690722 0.000000e+00 3541.0
5 TraesCS1B01G159900 chr1A 93.417 881 40 3 3257 4136 246690674 246689811 0.000000e+00 1290.0
6 TraesCS1B01G159900 chr1D 89.082 1438 55 28 703 2106 196611850 196610481 0.000000e+00 1692.0
7 TraesCS1B01G159900 chr1D 93.694 1110 40 13 2097 3182 196610455 196609352 0.000000e+00 1635.0
8 TraesCS1B01G159900 chr1D 94.205 880 30 3 3258 4136 196609333 196608474 0.000000e+00 1323.0
9 TraesCS1B01G159900 chr1D 86.431 339 33 4 356 690 492941106 492940777 4.250000e-95 359.0
10 TraesCS1B01G159900 chr1D 85.484 310 18 11 2302 2595 69689083 69688785 9.400000e-77 298.0
11 TraesCS1B01G159900 chr1D 89.024 82 4 4 3184 3262 202481488 202481409 3.680000e-16 97.1
12 TraesCS1B01G159900 chr6B 97.320 709 16 3 1 707 574640116 574640823 0.000000e+00 1201.0
13 TraesCS1B01G159900 chr6B 83.434 332 40 8 392 710 702668054 702668383 1.220000e-75 294.0
14 TraesCS1B01G159900 chr2B 96.605 707 22 2 1 706 10562074 10562779 0.000000e+00 1171.0
15 TraesCS1B01G159900 chr2B 92.537 335 18 6 4137 4466 29189983 29190315 1.450000e-129 473.0
16 TraesCS1B01G159900 chr2B 92.216 334 20 6 4137 4466 170084012 170084343 6.770000e-128 468.0
17 TraesCS1B01G159900 chr2B 91.916 334 19 6 4137 4466 479991507 479991178 1.130000e-125 460.0
18 TraesCS1B01G159900 chr2B 90.756 238 22 0 2358 2595 143243888 143244125 7.210000e-83 318.0
19 TraesCS1B01G159900 chr6A 86.536 713 92 4 1 710 607817545 607818256 0.000000e+00 782.0
20 TraesCS1B01G159900 chr3B 92.771 332 21 3 4137 4466 735809313 735808983 1.120000e-130 477.0
21 TraesCS1B01G159900 chr3B 92.470 332 23 2 4137 4466 60407102 60406771 1.450000e-129 473.0
22 TraesCS1B01G159900 chr3B 92.192 333 21 4 4137 4466 804315403 804315073 2.430000e-127 466.0
23 TraesCS1B01G159900 chr2A 90.341 352 33 1 84 434 52098750 52099101 1.130000e-125 460.0
24 TraesCS1B01G159900 chr2A 89.950 199 20 0 418 616 52099181 52099379 1.590000e-64 257.0
25 TraesCS1B01G159900 chr2A 93.548 93 6 0 618 710 52099640 52099732 6.030000e-29 139.0
26 TraesCS1B01G159900 chr5B 91.617 334 25 3 4136 4466 621777483 621777816 4.070000e-125 459.0
27 TraesCS1B01G159900 chr5B 92.424 66 4 1 3185 3250 20732163 20732227 4.760000e-15 93.5
28 TraesCS1B01G159900 chr3A 92.017 238 19 0 2358 2595 411839203 411838966 7.160000e-88 335.0
29 TraesCS1B01G159900 chr5D 93.056 72 4 1 3183 3253 228558809 228558880 2.200000e-18 104.0
30 TraesCS1B01G159900 chr2D 93.939 66 2 2 3184 3248 324997903 324997839 1.020000e-16 99.0
31 TraesCS1B01G159900 chr4A 90.667 75 3 4 3183 3255 602285485 602285557 3.680000e-16 97.1
32 TraesCS1B01G159900 chr7D 91.176 68 4 2 3184 3250 121190701 121190767 1.710000e-14 91.6
33 TraesCS1B01G159900 chr7D 91.176 68 4 2 3184 3250 121796681 121796615 1.710000e-14 91.6
34 TraesCS1B01G159900 chr3D 90.141 71 6 1 3183 3253 84672919 84672850 1.710000e-14 91.6
35 TraesCS1B01G159900 chr3D 88.000 75 7 1 3183 3257 125691152 125691080 2.210000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G159900 chr1B 272877656 272882123 4467 True 8251.000000 8251 100.000000 1 4468 1 chr1B.!!$R2 4467
1 TraesCS1B01G159900 chr1B 183064670 183065374 704 True 1186.000000 1186 97.025000 1 706 1 chr1B.!!$R1 705
2 TraesCS1B01G159900 chr1A 246689811 246693226 3415 True 2415.500000 3541 92.954500 707 4136 2 chr1A.!!$R1 3429
3 TraesCS1B01G159900 chr1D 196608474 196611850 3376 True 1550.000000 1692 92.327000 703 4136 3 chr1D.!!$R4 3433
4 TraesCS1B01G159900 chr6B 574640116 574640823 707 False 1201.000000 1201 97.320000 1 707 1 chr6B.!!$F1 706
5 TraesCS1B01G159900 chr2B 10562074 10562779 705 False 1171.000000 1171 96.605000 1 706 1 chr2B.!!$F1 705
6 TraesCS1B01G159900 chr6A 607817545 607818256 711 False 782.000000 782 86.536000 1 710 1 chr6A.!!$F1 709
7 TraesCS1B01G159900 chr2A 52098750 52099732 982 False 285.333333 460 91.279667 84 710 3 chr2A.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1182 3.114616 CTCCTCCAACACGCGCAG 61.115 66.667 5.73 0.55 0.00 5.18 F
1936 2360 0.031178 GCTGGCGCATAATTGAAGGG 59.969 55.000 10.83 0.00 35.78 3.95 F
2286 2747 0.180406 AACAGAACTGCTCCGGTTGT 59.820 50.000 0.00 0.00 32.62 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2247 2708 0.240945 GCACCTGTTGATCCAAACGG 59.759 55.0 0.0 0.0 36.38 4.44 R
3204 3719 0.173481 CGGCCTCTTCATCAGAACGA 59.827 55.0 0.0 0.0 0.00 3.85 R
4168 4688 0.119155 TGGGGGAGTTGGAGTGATCT 59.881 55.0 0.0 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.641498 AGAAAGATAACCACTGAAAATCACAT 57.359 30.769 0.00 0.00 0.00 3.21
72 73 6.109359 AGAAAATCAGAGACAGGGAATTACG 58.891 40.000 0.00 0.00 0.00 3.18
115 116 8.231692 TCCAGATTCAGTCAAAATTTACACAA 57.768 30.769 0.00 0.00 0.00 3.33
143 144 4.774200 AGCCTGGCATGAACTAAGAAATTT 59.226 37.500 22.65 0.00 0.00 1.82
253 257 5.107104 GCGACTATTGAACACTCACAATCAA 60.107 40.000 0.00 0.00 37.75 2.57
816 1182 3.114616 CTCCTCCAACACGCGCAG 61.115 66.667 5.73 0.55 0.00 5.18
1070 1469 1.964373 GCTTTTCGGTTCGAGGCCA 60.964 57.895 5.01 0.00 37.14 5.36
1079 1478 0.108804 GTTCGAGGCCACTGATTCGA 60.109 55.000 5.01 7.02 39.97 3.71
1224 1623 1.652012 CTTTCTCGCCAACGCCAAA 59.348 52.632 0.00 0.00 39.84 3.28
1225 1624 0.660300 CTTTCTCGCCAACGCCAAAC 60.660 55.000 0.00 0.00 39.84 2.93
1302 1713 1.270252 GGACATTTGGGCCTGTTTGTG 60.270 52.381 4.53 0.00 0.00 3.33
1303 1714 1.412343 GACATTTGGGCCTGTTTGTGT 59.588 47.619 4.53 0.34 0.00 3.72
1304 1715 1.836802 ACATTTGGGCCTGTTTGTGTT 59.163 42.857 4.53 0.00 0.00 3.32
1305 1716 2.211806 CATTTGGGCCTGTTTGTGTTG 58.788 47.619 4.53 0.00 0.00 3.33
1379 1790 1.238439 CCACGAAATCAGCAAGGTGT 58.762 50.000 0.00 0.00 0.00 4.16
1388 1799 3.660621 GCAAGGTGTGTGCTCCTC 58.339 61.111 0.00 0.00 37.60 3.71
1389 1800 1.968540 GCAAGGTGTGTGCTCCTCC 60.969 63.158 0.00 0.00 37.60 4.30
1390 1801 1.302832 CAAGGTGTGTGCTCCTCCC 60.303 63.158 0.00 0.00 37.60 4.30
1391 1802 1.462238 AAGGTGTGTGCTCCTCCCT 60.462 57.895 0.00 0.00 37.60 4.20
1394 1805 0.250513 GGTGTGTGCTCCTCCCTTAG 59.749 60.000 0.00 0.00 0.00 2.18
1399 1810 2.366972 GCTCCTCCCTTAGCCCCA 60.367 66.667 0.00 0.00 32.40 4.96
1403 1814 0.400525 TCCTCCCTTAGCCCCATCTG 60.401 60.000 0.00 0.00 0.00 2.90
1409 1820 2.509964 CCCTTAGCCCCATCTGTTACTT 59.490 50.000 0.00 0.00 0.00 2.24
1415 1826 5.717119 AGCCCCATCTGTTACTTAATTCT 57.283 39.130 0.00 0.00 0.00 2.40
1417 1828 7.394144 AGCCCCATCTGTTACTTAATTCTAT 57.606 36.000 0.00 0.00 0.00 1.98
1419 1830 7.293535 AGCCCCATCTGTTACTTAATTCTATCT 59.706 37.037 0.00 0.00 0.00 1.98
1421 1832 7.815068 CCCCATCTGTTACTTAATTCTATCTCG 59.185 40.741 0.00 0.00 0.00 4.04
1454 1865 0.613260 TTGCTGTATGCCTTCGACCT 59.387 50.000 0.00 0.00 42.00 3.85
1455 1866 0.613260 TGCTGTATGCCTTCGACCTT 59.387 50.000 0.00 0.00 42.00 3.50
1456 1867 1.291132 GCTGTATGCCTTCGACCTTC 58.709 55.000 0.00 0.00 35.15 3.46
1457 1868 1.134670 GCTGTATGCCTTCGACCTTCT 60.135 52.381 0.00 0.00 35.15 2.85
1458 1869 2.678190 GCTGTATGCCTTCGACCTTCTT 60.678 50.000 0.00 0.00 35.15 2.52
1459 1870 3.600388 CTGTATGCCTTCGACCTTCTTT 58.400 45.455 0.00 0.00 0.00 2.52
1479 1893 2.723530 TTCTTCCTCCTCCTCCACTT 57.276 50.000 0.00 0.00 0.00 3.16
1614 2028 4.418328 CCGGTCGCCCATCCCAAA 62.418 66.667 0.00 0.00 0.00 3.28
1717 2136 2.620251 ATTCCGATTCTCGCCATCAA 57.380 45.000 0.00 0.00 38.82 2.57
1718 2137 1.939974 TTCCGATTCTCGCCATCAAG 58.060 50.000 0.00 0.00 38.82 3.02
1936 2360 0.031178 GCTGGCGCATAATTGAAGGG 59.969 55.000 10.83 0.00 35.78 3.95
1962 2386 0.392706 TGCATCCGGTAGCCATGTAG 59.607 55.000 16.17 0.00 0.00 2.74
2217 2678 8.747538 ACTTTCACCTTTTGACTGTACTAATT 57.252 30.769 0.00 0.00 32.26 1.40
2219 2680 6.554334 TCACCTTTTGACTGTACTAATTGC 57.446 37.500 0.00 0.00 0.00 3.56
2220 2681 6.058833 TCACCTTTTGACTGTACTAATTGCA 58.941 36.000 0.00 0.00 0.00 4.08
2221 2682 6.714810 TCACCTTTTGACTGTACTAATTGCAT 59.285 34.615 0.00 0.00 0.00 3.96
2222 2683 6.803320 CACCTTTTGACTGTACTAATTGCATG 59.197 38.462 0.00 0.00 0.00 4.06
2223 2684 6.714810 ACCTTTTGACTGTACTAATTGCATGA 59.285 34.615 0.00 0.00 0.00 3.07
2247 2708 4.754372 TGACATGACATGAAAACTGCTC 57.246 40.909 22.19 6.92 0.00 4.26
2286 2747 0.180406 AACAGAACTGCTCCGGTTGT 59.820 50.000 0.00 0.00 32.62 3.32
2344 2805 5.107104 TGCAACTTCTTTGACGATGATGTAC 60.107 40.000 0.00 0.00 37.39 2.90
2346 2807 4.806330 ACTTCTTTGACGATGATGTACGT 58.194 39.130 0.00 0.00 45.32 3.57
2349 2810 5.299582 TCTTTGACGATGATGTACGTGTA 57.700 39.130 0.00 0.00 42.74 2.90
2350 2811 5.701855 TCTTTGACGATGATGTACGTGTAA 58.298 37.500 0.00 0.00 42.74 2.41
2352 2813 6.809689 TCTTTGACGATGATGTACGTGTAATT 59.190 34.615 0.00 0.00 42.74 1.40
2353 2814 6.563398 TTGACGATGATGTACGTGTAATTC 57.437 37.500 0.00 0.00 42.74 2.17
2356 2817 4.802039 ACGATGATGTACGTGTAATTCCAC 59.198 41.667 0.00 0.00 41.17 4.02
2357 2818 4.801516 CGATGATGTACGTGTAATTCCACA 59.198 41.667 0.00 0.00 34.98 4.17
2358 2819 5.051708 CGATGATGTACGTGTAATTCCACAG 60.052 44.000 0.00 0.00 34.98 3.66
2359 2820 5.142061 TGATGTACGTGTAATTCCACAGT 57.858 39.130 0.00 3.50 34.98 3.55
2360 2821 5.165676 TGATGTACGTGTAATTCCACAGTC 58.834 41.667 0.00 0.00 34.98 3.51
2409 2889 4.820897 TGTCTGACAGCTATGTTACCTTG 58.179 43.478 6.36 0.00 40.68 3.61
2573 3058 0.597568 TTTTCAGAACTGGCGGCATG 59.402 50.000 13.85 8.21 0.00 4.06
2579 3064 1.304381 AACTGGCGGCATGGACAAT 60.304 52.632 13.85 0.00 0.00 2.71
2626 3111 2.286772 CGTTGGGTGTGAAAGTTACTGC 60.287 50.000 0.00 0.00 0.00 4.40
2673 3158 7.071698 TGTCTCTCCATTAAAGATGGCTCTAAT 59.928 37.037 0.14 0.00 39.01 1.73
2676 3161 8.497910 TCTCCATTAAAGATGGCTCTAATAGT 57.502 34.615 0.14 0.00 39.01 2.12
2788 3273 0.389166 CCTGTCTGCTTCGAGGTGAC 60.389 60.000 13.04 13.04 0.00 3.67
2797 3282 1.221466 TTCGAGGTGACGCTTTGCTG 61.221 55.000 0.00 0.00 0.00 4.41
2803 3288 1.130561 GGTGACGCTTTGCTGTAATCC 59.869 52.381 0.00 0.00 0.00 3.01
2805 3290 2.420022 GTGACGCTTTGCTGTAATCCAT 59.580 45.455 0.00 0.00 0.00 3.41
2826 3311 4.112634 TGCCCTAAACACTCCTGATTTT 57.887 40.909 0.00 0.00 0.00 1.82
2829 3314 3.826157 CCCTAAACACTCCTGATTTTGCA 59.174 43.478 0.00 0.00 0.00 4.08
2839 3324 6.872020 CACTCCTGATTTTGCAATTCTTGATT 59.128 34.615 0.00 0.00 0.00 2.57
2841 3326 7.386848 ACTCCTGATTTTGCAATTCTTGATTTG 59.613 33.333 0.00 2.09 0.00 2.32
2856 3341 6.446318 TCTTGATTTGTAAAGACAACCATGC 58.554 36.000 0.00 0.00 45.29 4.06
2863 3348 6.214191 TGTAAAGACAACCATGCTTTTGAA 57.786 33.333 6.87 0.00 35.74 2.69
2872 3357 3.696051 ACCATGCTTTTGAATCGCAGTAT 59.304 39.130 0.00 0.00 37.06 2.12
2992 3477 4.857871 TCTTCAGACAACTGTTTGTTCG 57.142 40.909 0.00 0.00 46.43 3.95
3065 3550 1.269569 GGTTTGTTTTCCCCAGCTTCG 60.270 52.381 0.00 0.00 0.00 3.79
3182 3697 4.583871 CCAGAAGAAGATGGTAAGCAACT 58.416 43.478 0.00 0.00 0.00 3.16
3183 3698 5.006386 CCAGAAGAAGATGGTAAGCAACTT 58.994 41.667 0.00 0.00 0.00 2.66
3184 3699 5.474876 CCAGAAGAAGATGGTAAGCAACTTT 59.525 40.000 0.00 0.00 0.00 2.66
3185 3700 6.655003 CCAGAAGAAGATGGTAAGCAACTTTA 59.345 38.462 0.00 0.00 0.00 1.85
3186 3701 7.174946 CCAGAAGAAGATGGTAAGCAACTTTAA 59.825 37.037 0.00 0.00 0.00 1.52
3187 3702 8.734386 CAGAAGAAGATGGTAAGCAACTTTAAT 58.266 33.333 0.00 0.00 0.00 1.40
3194 3709 9.125026 AGATGGTAAGCAACTTTAATAAGATGG 57.875 33.333 0.00 0.00 35.40 3.51
3196 3711 6.096282 TGGTAAGCAACTTTAATAAGATGGCC 59.904 38.462 0.00 0.00 35.40 5.36
3197 3712 4.900635 AGCAACTTTAATAAGATGGCCG 57.099 40.909 0.00 0.00 35.40 6.13
3199 3714 3.181491 GCAACTTTAATAAGATGGCCGCA 60.181 43.478 0.00 0.00 35.40 5.69
3200 3715 4.499696 GCAACTTTAATAAGATGGCCGCAT 60.500 41.667 0.00 0.00 35.40 4.73
3201 3716 4.836125 ACTTTAATAAGATGGCCGCATG 57.164 40.909 0.00 0.00 35.30 4.06
3202 3717 3.004734 ACTTTAATAAGATGGCCGCATGC 59.995 43.478 7.91 7.91 35.70 4.06
3203 3718 2.268762 TAATAAGATGGCCGCATGCA 57.731 45.000 19.57 0.00 43.89 3.96
3204 3719 1.624336 AATAAGATGGCCGCATGCAT 58.376 45.000 19.57 2.77 43.89 3.96
3205 3720 1.171308 ATAAGATGGCCGCATGCATC 58.829 50.000 19.57 12.80 43.89 3.91
3206 3721 1.229975 TAAGATGGCCGCATGCATCG 61.230 55.000 19.57 5.23 43.89 3.84
3207 3722 3.282157 GATGGCCGCATGCATCGT 61.282 61.111 19.57 7.41 43.89 3.73
3208 3723 2.829914 ATGGCCGCATGCATCGTT 60.830 55.556 19.57 0.00 43.89 3.85
3209 3724 2.722130 GATGGCCGCATGCATCGTTC 62.722 60.000 19.57 4.87 43.89 3.95
3210 3725 3.204827 GGCCGCATGCATCGTTCT 61.205 61.111 19.57 0.00 43.89 3.01
3211 3726 2.023741 GCCGCATGCATCGTTCTG 59.976 61.111 19.57 0.00 40.77 3.02
3212 3727 2.463620 GCCGCATGCATCGTTCTGA 61.464 57.895 19.57 0.00 40.77 3.27
3213 3728 1.779025 GCCGCATGCATCGTTCTGAT 61.779 55.000 19.57 0.00 40.77 2.90
3222 3737 2.611225 ATCGTTCTGATGAAGAGGCC 57.389 50.000 0.00 0.00 35.91 5.19
3223 3738 0.173481 TCGTTCTGATGAAGAGGCCG 59.827 55.000 0.00 0.00 35.91 6.13
3224 3739 0.807667 CGTTCTGATGAAGAGGCCGG 60.808 60.000 0.00 0.00 35.91 6.13
3225 3740 0.462759 GTTCTGATGAAGAGGCCGGG 60.463 60.000 2.18 0.00 35.91 5.73
3226 3741 1.626356 TTCTGATGAAGAGGCCGGGG 61.626 60.000 2.18 0.00 35.91 5.73
3227 3742 3.089874 TGATGAAGAGGCCGGGGG 61.090 66.667 2.18 0.00 0.00 5.40
3228 3743 3.090532 GATGAAGAGGCCGGGGGT 61.091 66.667 2.18 0.00 0.00 4.95
3229 3744 1.764854 GATGAAGAGGCCGGGGGTA 60.765 63.158 2.18 0.00 0.00 3.69
3230 3745 1.307517 ATGAAGAGGCCGGGGGTAA 60.308 57.895 2.18 0.00 0.00 2.85
3231 3746 0.697854 ATGAAGAGGCCGGGGGTAAT 60.698 55.000 2.18 0.00 0.00 1.89
3232 3747 1.342672 TGAAGAGGCCGGGGGTAATC 61.343 60.000 2.18 0.00 0.00 1.75
3233 3748 2.053259 GAAGAGGCCGGGGGTAATCC 62.053 65.000 2.18 0.00 0.00 3.01
3234 3749 2.447959 GAGGCCGGGGGTAATCCT 60.448 66.667 2.18 0.00 35.33 3.24
3235 3750 2.043941 AGGCCGGGGGTAATCCTT 59.956 61.111 2.18 0.00 35.33 3.36
3236 3751 2.053259 GAGGCCGGGGGTAATCCTTC 62.053 65.000 2.18 0.00 35.33 3.46
3237 3752 2.076803 GGCCGGGGGTAATCCTTCT 61.077 63.158 2.18 0.00 35.33 2.85
3238 3753 1.642513 GGCCGGGGGTAATCCTTCTT 61.643 60.000 2.18 0.00 35.33 2.52
3239 3754 0.257905 GCCGGGGGTAATCCTTCTTT 59.742 55.000 2.18 0.00 35.33 2.52
3240 3755 1.341679 GCCGGGGGTAATCCTTCTTTT 60.342 52.381 2.18 0.00 35.33 2.27
3241 3756 2.651455 CCGGGGGTAATCCTTCTTTTC 58.349 52.381 0.00 0.00 35.33 2.29
3242 3757 2.025699 CCGGGGGTAATCCTTCTTTTCA 60.026 50.000 0.00 0.00 35.33 2.69
3243 3758 3.562609 CCGGGGGTAATCCTTCTTTTCAA 60.563 47.826 0.00 0.00 35.33 2.69
3244 3759 4.083565 CGGGGGTAATCCTTCTTTTCAAA 58.916 43.478 0.00 0.00 35.33 2.69
3245 3760 4.525100 CGGGGGTAATCCTTCTTTTCAAAA 59.475 41.667 0.00 0.00 35.33 2.44
3246 3761 5.011227 CGGGGGTAATCCTTCTTTTCAAAAA 59.989 40.000 0.00 0.00 35.33 1.94
3303 3818 4.016444 ACCTGAACAAACAGTGATGTGTT 58.984 39.130 0.00 3.82 42.62 3.32
3305 3820 5.036737 CCTGAACAAACAGTGATGTGTTTC 58.963 41.667 0.00 0.00 45.53 2.78
3306 3821 5.163622 CCTGAACAAACAGTGATGTGTTTCT 60.164 40.000 0.00 0.00 45.53 2.52
3307 3822 6.266168 TGAACAAACAGTGATGTGTTTCTT 57.734 33.333 0.00 0.00 45.53 2.52
3308 3823 6.321717 TGAACAAACAGTGATGTGTTTCTTC 58.678 36.000 0.00 9.30 45.53 2.87
3473 3991 2.036414 TCCAGAGTCTGAGCGCCT 59.964 61.111 22.09 0.00 32.44 5.52
3587 4105 1.528129 GCTTGTAGGTTGAAGCTGCT 58.472 50.000 13.27 0.00 41.21 4.24
3621 4139 1.896465 GTAGGAAGCACAGGAGAGTGT 59.104 52.381 0.00 0.00 41.52 3.55
3710 4229 2.570468 TCGCAATTCGAAGAACAACG 57.430 45.000 3.35 1.93 45.36 4.10
3757 4276 3.279434 GGAGGAATGATTTACCGCTTGT 58.721 45.455 0.00 0.00 0.00 3.16
3758 4277 3.312697 GGAGGAATGATTTACCGCTTGTC 59.687 47.826 0.00 0.00 0.00 3.18
3759 4278 3.938963 GAGGAATGATTTACCGCTTGTCA 59.061 43.478 0.00 0.00 0.00 3.58
3760 4279 4.526970 AGGAATGATTTACCGCTTGTCAT 58.473 39.130 0.00 0.00 0.00 3.06
3761 4280 4.336433 AGGAATGATTTACCGCTTGTCATG 59.664 41.667 0.00 0.00 30.52 3.07
3762 4281 4.498009 GGAATGATTTACCGCTTGTCATGG 60.498 45.833 0.00 0.00 30.52 3.66
3763 4282 3.066291 TGATTTACCGCTTGTCATGGT 57.934 42.857 0.00 0.00 39.80 3.55
3764 4283 2.746904 TGATTTACCGCTTGTCATGGTG 59.253 45.455 0.00 0.00 37.20 4.17
3765 4284 0.878416 TTTACCGCTTGTCATGGTGC 59.122 50.000 0.00 0.00 37.20 5.01
3766 4285 1.295357 TTACCGCTTGTCATGGTGCG 61.295 55.000 12.83 12.83 46.74 5.34
3767 4286 4.465512 CCGCTTGTCATGGTGCGC 62.466 66.667 0.00 0.00 45.97 6.09
3768 4287 3.425713 CGCTTGTCATGGTGCGCT 61.426 61.111 9.73 0.00 41.85 5.92
3769 4288 2.956987 GCTTGTCATGGTGCGCTT 59.043 55.556 9.73 0.00 0.00 4.68
3770 4289 1.443194 GCTTGTCATGGTGCGCTTG 60.443 57.895 9.73 1.11 0.00 4.01
3787 4306 3.368220 CGCTTGATCATCCCCTCTGATAG 60.368 52.174 0.00 0.00 33.56 2.08
3795 4314 3.176924 TCCCCTCTGATAGGTATGAGC 57.823 52.381 0.00 0.00 44.90 4.26
3813 4332 2.738846 GAGCTGTTGTGTGGTACATGAG 59.261 50.000 0.00 0.00 44.52 2.90
3823 4342 3.024547 GTGGTACATGAGCCTGTCTAGA 58.975 50.000 0.00 0.00 44.52 2.43
3970 4489 5.181811 CCAAAACATGCTTCTGTGATCTGTA 59.818 40.000 0.00 0.00 0.00 2.74
3975 4494 6.354938 ACATGCTTCTGTGATCTGTATGATT 58.645 36.000 0.00 0.00 35.14 2.57
3980 4499 7.279536 TGCTTCTGTGATCTGTATGATTTTCTC 59.720 37.037 0.00 0.00 35.14 2.87
4136 4656 0.250513 CTTCTACACTGGGCCACTCC 59.749 60.000 0.00 0.00 0.00 3.85
4137 4657 1.541310 TTCTACACTGGGCCACTCCG 61.541 60.000 0.00 0.00 34.94 4.63
4138 4658 1.982395 CTACACTGGGCCACTCCGA 60.982 63.158 0.00 0.00 34.94 4.55
4139 4659 1.534476 TACACTGGGCCACTCCGAA 60.534 57.895 0.00 0.00 34.94 4.30
4140 4660 1.122632 TACACTGGGCCACTCCGAAA 61.123 55.000 0.00 0.00 34.94 3.46
4141 4661 1.002134 CACTGGGCCACTCCGAAAT 60.002 57.895 0.00 0.00 34.94 2.17
4142 4662 1.026718 CACTGGGCCACTCCGAAATC 61.027 60.000 0.00 0.00 34.94 2.17
4143 4663 1.299648 CTGGGCCACTCCGAAATCA 59.700 57.895 0.00 0.00 34.94 2.57
4144 4664 1.002624 TGGGCCACTCCGAAATCAC 60.003 57.895 0.00 0.00 34.94 3.06
4145 4665 1.299976 GGGCCACTCCGAAATCACT 59.700 57.895 4.39 0.00 34.94 3.41
4146 4666 0.539986 GGGCCACTCCGAAATCACTA 59.460 55.000 4.39 0.00 34.94 2.74
4147 4667 1.065709 GGGCCACTCCGAAATCACTAA 60.066 52.381 4.39 0.00 34.94 2.24
4148 4668 2.421529 GGGCCACTCCGAAATCACTAAT 60.422 50.000 4.39 0.00 34.94 1.73
4149 4669 3.279434 GGCCACTCCGAAATCACTAATT 58.721 45.455 0.00 0.00 0.00 1.40
4150 4670 4.448210 GGCCACTCCGAAATCACTAATTA 58.552 43.478 0.00 0.00 0.00 1.40
4151 4671 4.879545 GGCCACTCCGAAATCACTAATTAA 59.120 41.667 0.00 0.00 0.00 1.40
4152 4672 5.007724 GGCCACTCCGAAATCACTAATTAAG 59.992 44.000 0.00 0.00 0.00 1.85
4153 4673 5.007724 GCCACTCCGAAATCACTAATTAAGG 59.992 44.000 0.00 0.00 0.00 2.69
4154 4674 6.346096 CCACTCCGAAATCACTAATTAAGGA 58.654 40.000 0.00 0.00 34.11 3.36
4155 4675 6.480320 CCACTCCGAAATCACTAATTAAGGAG 59.520 42.308 14.60 14.60 46.32 3.69
4158 4678 8.576936 CTCCGAAATCACTAATTAAGGAGTAC 57.423 38.462 10.70 0.00 41.52 2.73
4159 4679 8.302515 TCCGAAATCACTAATTAAGGAGTACT 57.697 34.615 0.00 0.00 32.49 2.73
4160 4680 8.411683 TCCGAAATCACTAATTAAGGAGTACTC 58.588 37.037 14.87 14.87 32.49 2.59
4161 4681 8.414778 CCGAAATCACTAATTAAGGAGTACTCT 58.585 37.037 21.88 6.36 0.00 3.24
4162 4682 9.804758 CGAAATCACTAATTAAGGAGTACTCTT 57.195 33.333 21.88 12.52 0.00 2.85
4165 4685 8.950208 ATCACTAATTAAGGAGTACTCTTTGC 57.050 34.615 25.81 9.27 31.18 3.68
4166 4686 7.033791 TCACTAATTAAGGAGTACTCTTTGCG 58.966 38.462 25.81 13.44 31.18 4.85
4167 4687 6.255887 CACTAATTAAGGAGTACTCTTTGCGG 59.744 42.308 25.81 14.82 31.18 5.69
4168 4688 5.416271 AATTAAGGAGTACTCTTTGCGGA 57.584 39.130 25.81 12.12 31.18 5.54
4169 4689 4.451629 TTAAGGAGTACTCTTTGCGGAG 57.548 45.455 25.81 0.00 39.09 4.63
4170 4690 2.217510 AGGAGTACTCTTTGCGGAGA 57.782 50.000 21.88 0.00 37.13 3.71
4171 4691 2.741145 AGGAGTACTCTTTGCGGAGAT 58.259 47.619 21.88 0.00 37.13 2.75
4172 4692 2.691011 AGGAGTACTCTTTGCGGAGATC 59.309 50.000 21.88 1.35 37.13 2.75
4173 4693 2.427453 GGAGTACTCTTTGCGGAGATCA 59.573 50.000 21.88 0.00 37.13 2.92
4174 4694 3.440228 GAGTACTCTTTGCGGAGATCAC 58.560 50.000 15.91 0.00 37.13 3.06
4175 4695 3.093057 AGTACTCTTTGCGGAGATCACT 58.907 45.455 7.91 3.55 37.13 3.41
4176 4696 2.663826 ACTCTTTGCGGAGATCACTC 57.336 50.000 7.91 0.00 41.94 3.51
4186 4706 0.833949 GAGATCACTCCAACTCCCCC 59.166 60.000 0.00 0.00 37.19 5.40
4187 4707 0.119155 AGATCACTCCAACTCCCCCA 59.881 55.000 0.00 0.00 0.00 4.96
4188 4708 0.543749 GATCACTCCAACTCCCCCAG 59.456 60.000 0.00 0.00 0.00 4.45
4189 4709 0.916358 ATCACTCCAACTCCCCCAGG 60.916 60.000 0.00 0.00 0.00 4.45
4190 4710 1.847968 CACTCCAACTCCCCCAGGT 60.848 63.158 0.00 0.00 0.00 4.00
4191 4711 1.072930 ACTCCAACTCCCCCAGGTT 60.073 57.895 0.00 0.00 0.00 3.50
4192 4712 1.380302 CTCCAACTCCCCCAGGTTG 59.620 63.158 0.00 0.00 41.46 3.77
4193 4713 2.283173 CCAACTCCCCCAGGTTGC 60.283 66.667 0.00 0.00 40.75 4.17
4194 4714 2.672996 CAACTCCCCCAGGTTGCG 60.673 66.667 0.00 0.00 36.78 4.85
4195 4715 2.852075 AACTCCCCCAGGTTGCGA 60.852 61.111 0.00 0.00 0.00 5.10
4196 4716 3.192103 AACTCCCCCAGGTTGCGAC 62.192 63.158 0.00 0.00 0.00 5.19
4197 4717 3.636231 CTCCCCCAGGTTGCGACA 61.636 66.667 6.39 0.00 0.00 4.35
4198 4718 3.172106 TCCCCCAGGTTGCGACAA 61.172 61.111 6.39 0.00 0.00 3.18
4199 4719 2.672996 CCCCCAGGTTGCGACAAG 60.673 66.667 6.39 0.00 0.00 3.16
4200 4720 2.113139 CCCCAGGTTGCGACAAGT 59.887 61.111 6.39 0.00 0.00 3.16
4201 4721 2.260869 CCCCAGGTTGCGACAAGTG 61.261 63.158 6.39 0.00 0.00 3.16
4202 4722 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
4203 4723 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
4228 4748 0.513820 GCATGTGTGCCATTTGTTGC 59.486 50.000 0.00 0.00 45.76 4.17
4229 4749 1.867166 CATGTGTGCCATTTGTTGCA 58.133 45.000 0.00 0.00 34.54 4.08
4230 4750 2.210961 CATGTGTGCCATTTGTTGCAA 58.789 42.857 0.00 0.00 39.57 4.08
4231 4751 1.649664 TGTGTGCCATTTGTTGCAAC 58.350 45.000 22.83 22.83 39.57 4.17
4232 4752 0.936600 GTGTGCCATTTGTTGCAACC 59.063 50.000 26.14 10.45 39.57 3.77
4233 4753 0.829333 TGTGCCATTTGTTGCAACCT 59.171 45.000 26.14 8.74 39.57 3.50
4234 4754 1.219646 GTGCCATTTGTTGCAACCTG 58.780 50.000 26.14 19.10 39.57 4.00
4235 4755 0.829333 TGCCATTTGTTGCAACCTGT 59.171 45.000 26.14 9.31 33.87 4.00
4236 4756 1.219646 GCCATTTGTTGCAACCTGTG 58.780 50.000 26.14 19.46 0.00 3.66
4237 4757 1.202510 GCCATTTGTTGCAACCTGTGA 60.203 47.619 26.14 4.69 0.00 3.58
4238 4758 2.746269 CCATTTGTTGCAACCTGTGAG 58.254 47.619 26.14 11.21 0.00 3.51
4239 4759 2.101249 CCATTTGTTGCAACCTGTGAGT 59.899 45.455 26.14 3.30 0.00 3.41
4240 4760 3.430651 CCATTTGTTGCAACCTGTGAGTT 60.431 43.478 26.14 0.59 0.00 3.01
4241 4761 3.951775 TTTGTTGCAACCTGTGAGTTT 57.048 38.095 26.14 0.00 0.00 2.66
4242 4762 3.951775 TTGTTGCAACCTGTGAGTTTT 57.048 38.095 26.14 0.00 0.00 2.43
4243 4763 3.502191 TGTTGCAACCTGTGAGTTTTC 57.498 42.857 26.14 0.00 0.00 2.29
4244 4764 2.165437 TGTTGCAACCTGTGAGTTTTCC 59.835 45.455 26.14 0.00 0.00 3.13
4245 4765 2.427095 GTTGCAACCTGTGAGTTTTCCT 59.573 45.455 19.15 0.00 0.00 3.36
4246 4766 2.733956 TGCAACCTGTGAGTTTTCCTT 58.266 42.857 0.00 0.00 0.00 3.36
4247 4767 3.096092 TGCAACCTGTGAGTTTTCCTTT 58.904 40.909 0.00 0.00 0.00 3.11
4248 4768 3.513515 TGCAACCTGTGAGTTTTCCTTTT 59.486 39.130 0.00 0.00 0.00 2.27
4249 4769 4.020662 TGCAACCTGTGAGTTTTCCTTTTT 60.021 37.500 0.00 0.00 0.00 1.94
4294 4814 8.687824 AAATGTTTTATCTCTTAAACCATGCG 57.312 30.769 0.00 0.00 34.32 4.73
4295 4815 6.811253 TGTTTTATCTCTTAAACCATGCGT 57.189 33.333 0.00 0.00 34.21 5.24
4296 4816 7.209471 TGTTTTATCTCTTAAACCATGCGTT 57.791 32.000 0.00 0.00 34.21 4.84
4297 4817 7.302524 TGTTTTATCTCTTAAACCATGCGTTC 58.697 34.615 0.00 0.00 34.21 3.95
4298 4818 7.041030 TGTTTTATCTCTTAAACCATGCGTTCA 60.041 33.333 0.00 0.00 34.21 3.18
4299 4819 7.441890 TTTATCTCTTAAACCATGCGTTCAA 57.558 32.000 0.83 0.00 31.78 2.69
4300 4820 5.957842 ATCTCTTAAACCATGCGTTCAAA 57.042 34.783 0.83 0.00 31.78 2.69
4301 4821 5.957842 TCTCTTAAACCATGCGTTCAAAT 57.042 34.783 0.83 0.00 31.78 2.32
4302 4822 5.938322 TCTCTTAAACCATGCGTTCAAATC 58.062 37.500 0.83 0.00 31.78 2.17
4303 4823 5.705441 TCTCTTAAACCATGCGTTCAAATCT 59.295 36.000 0.83 0.00 31.78 2.40
4304 4824 5.938322 TCTTAAACCATGCGTTCAAATCTC 58.062 37.500 0.83 0.00 31.78 2.75
4305 4825 2.900122 AACCATGCGTTCAAATCTCG 57.100 45.000 0.00 0.00 0.00 4.04
4306 4826 2.093306 ACCATGCGTTCAAATCTCGA 57.907 45.000 0.00 0.00 0.00 4.04
4307 4827 2.422597 ACCATGCGTTCAAATCTCGAA 58.577 42.857 0.00 0.00 0.00 3.71
4308 4828 2.159627 ACCATGCGTTCAAATCTCGAAC 59.840 45.455 0.00 0.00 39.50 3.95
4309 4829 2.476185 CCATGCGTTCAAATCTCGAACC 60.476 50.000 0.00 0.00 39.69 3.62
4310 4830 0.787787 TGCGTTCAAATCTCGAACCG 59.212 50.000 0.00 0.00 39.69 4.44
4311 4831 0.518559 GCGTTCAAATCTCGAACCGC 60.519 55.000 0.00 0.00 39.69 5.68
4312 4832 1.068474 CGTTCAAATCTCGAACCGCT 58.932 50.000 0.00 0.00 39.69 5.52
4313 4833 1.459592 CGTTCAAATCTCGAACCGCTT 59.540 47.619 0.00 0.00 39.69 4.68
4314 4834 2.096417 CGTTCAAATCTCGAACCGCTTT 60.096 45.455 0.00 0.00 39.69 3.51
4315 4835 3.479949 GTTCAAATCTCGAACCGCTTTC 58.520 45.455 0.00 0.00 37.40 2.62
4316 4836 2.761559 TCAAATCTCGAACCGCTTTCA 58.238 42.857 0.00 0.00 33.24 2.69
4317 4837 2.478894 TCAAATCTCGAACCGCTTTCAC 59.521 45.455 0.00 0.00 33.24 3.18
4318 4838 2.457366 AATCTCGAACCGCTTTCACT 57.543 45.000 0.00 0.00 33.24 3.41
4319 4839 3.587797 AATCTCGAACCGCTTTCACTA 57.412 42.857 0.00 0.00 33.24 2.74
4320 4840 3.802948 ATCTCGAACCGCTTTCACTAT 57.197 42.857 0.00 0.00 33.24 2.12
4321 4841 3.587797 TCTCGAACCGCTTTCACTATT 57.412 42.857 0.00 0.00 33.24 1.73
4322 4842 3.250744 TCTCGAACCGCTTTCACTATTG 58.749 45.455 0.00 0.00 33.24 1.90
4323 4843 2.343101 TCGAACCGCTTTCACTATTGG 58.657 47.619 0.00 0.00 33.24 3.16
4324 4844 2.028839 TCGAACCGCTTTCACTATTGGA 60.029 45.455 0.00 0.00 33.24 3.53
4325 4845 2.936498 CGAACCGCTTTCACTATTGGAT 59.064 45.455 0.00 0.00 33.24 3.41
4326 4846 3.374058 CGAACCGCTTTCACTATTGGATT 59.626 43.478 0.00 0.00 33.24 3.01
4327 4847 4.494199 CGAACCGCTTTCACTATTGGATTC 60.494 45.833 0.00 0.00 33.24 2.52
4328 4848 3.279434 ACCGCTTTCACTATTGGATTCC 58.721 45.455 0.00 0.00 0.00 3.01
4329 4849 3.054361 ACCGCTTTCACTATTGGATTCCT 60.054 43.478 3.95 0.00 0.00 3.36
4330 4850 3.561725 CCGCTTTCACTATTGGATTCCTC 59.438 47.826 3.95 0.00 0.00 3.71
4331 4851 3.246226 CGCTTTCACTATTGGATTCCTCG 59.754 47.826 3.95 0.00 0.00 4.63
4332 4852 3.002759 GCTTTCACTATTGGATTCCTCGC 59.997 47.826 3.95 0.00 0.00 5.03
4333 4853 2.509052 TCACTATTGGATTCCTCGCG 57.491 50.000 0.00 0.00 0.00 5.87
4334 4854 1.754803 TCACTATTGGATTCCTCGCGT 59.245 47.619 5.77 0.00 0.00 6.01
4335 4855 2.128035 CACTATTGGATTCCTCGCGTC 58.872 52.381 5.77 0.00 0.00 5.19
4336 4856 1.269102 ACTATTGGATTCCTCGCGTCG 60.269 52.381 5.77 0.00 0.00 5.12
4337 4857 1.001706 CTATTGGATTCCTCGCGTCGA 60.002 52.381 5.77 0.00 0.00 4.20
4348 4868 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
4349 4869 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
4350 4870 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
4351 4871 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
4352 4872 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
4353 4873 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
4354 4874 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
4355 4875 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
4356 4876 5.683743 CGTCGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
4357 4877 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
4358 4878 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
4359 4879 6.325028 TCGAGATCTTCAAAACTAGATCCCAT 59.675 38.462 0.00 0.00 38.24 4.00
4360 4880 6.423302 CGAGATCTTCAAAACTAGATCCCATG 59.577 42.308 0.00 0.00 38.24 3.66
4361 4881 7.205515 AGATCTTCAAAACTAGATCCCATGT 57.794 36.000 0.00 0.00 38.24 3.21
4362 4882 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
4363 4883 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
4364 4884 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
4365 4885 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
4366 4886 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
4367 4887 8.737168 TTCAAAACTAGATCCCATGTTGATAG 57.263 34.615 0.00 0.00 0.00 2.08
4368 4888 7.282585 TCAAAACTAGATCCCATGTTGATAGG 58.717 38.462 0.00 0.00 0.00 2.57
4369 4889 6.831664 AAACTAGATCCCATGTTGATAGGT 57.168 37.500 0.00 0.00 0.00 3.08
4370 4890 6.831664 AACTAGATCCCATGTTGATAGGTT 57.168 37.500 0.00 0.00 0.00 3.50
4371 4891 6.831664 ACTAGATCCCATGTTGATAGGTTT 57.168 37.500 0.00 0.00 0.00 3.27
4372 4892 7.213178 ACTAGATCCCATGTTGATAGGTTTT 57.787 36.000 0.00 0.00 0.00 2.43
4373 4893 7.056635 ACTAGATCCCATGTTGATAGGTTTTG 58.943 38.462 0.00 0.00 0.00 2.44
4374 4894 6.078456 AGATCCCATGTTGATAGGTTTTGA 57.922 37.500 0.00 0.00 0.00 2.69
4375 4895 5.888161 AGATCCCATGTTGATAGGTTTTGAC 59.112 40.000 0.00 0.00 0.00 3.18
4376 4896 4.006989 TCCCATGTTGATAGGTTTTGACG 58.993 43.478 0.00 0.00 0.00 4.35
4377 4897 4.006989 CCCATGTTGATAGGTTTTGACGA 58.993 43.478 0.00 0.00 0.00 4.20
4378 4898 4.457603 CCCATGTTGATAGGTTTTGACGAA 59.542 41.667 0.00 0.00 0.00 3.85
4379 4899 5.390613 CCATGTTGATAGGTTTTGACGAAC 58.609 41.667 0.00 0.00 0.00 3.95
4380 4900 5.181245 CCATGTTGATAGGTTTTGACGAACT 59.819 40.000 0.00 0.00 0.00 3.01
4381 4901 6.293955 CCATGTTGATAGGTTTTGACGAACTT 60.294 38.462 0.00 0.00 0.00 2.66
4382 4902 6.687081 TGTTGATAGGTTTTGACGAACTTT 57.313 33.333 0.00 0.00 0.00 2.66
4383 4903 7.090953 TGTTGATAGGTTTTGACGAACTTTT 57.909 32.000 0.00 0.00 0.00 2.27
4384 4904 7.540299 TGTTGATAGGTTTTGACGAACTTTTT 58.460 30.769 0.00 0.00 0.00 1.94
4428 4948 4.390048 CCGAACCGGGAACATGTT 57.610 55.556 11.78 11.78 44.15 2.71
4429 4949 2.636299 CCGAACCGGGAACATGTTT 58.364 52.632 13.36 0.00 44.15 2.83
4430 4950 0.955905 CCGAACCGGGAACATGTTTT 59.044 50.000 13.36 2.03 44.15 2.43
4431 4951 1.338655 CCGAACCGGGAACATGTTTTT 59.661 47.619 13.36 1.63 44.15 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.685276 TTATCATGTGATTTTCAGTGGTTATCT 57.315 29.630 0.19 0.00 36.05 1.98
72 73 8.789825 AATCTGGAAGCATGATACTATCAATC 57.210 34.615 0.00 0.00 43.50 2.67
184 188 2.497675 GGTCTCTCTGATGTACCTGCAA 59.502 50.000 0.00 0.00 0.00 4.08
253 257 1.985473 TGTGCCTCTGCTTGAATTGT 58.015 45.000 0.00 0.00 38.71 2.71
545 647 8.492673 CTGAACATTACAACAGCTTATCCTAA 57.507 34.615 0.00 0.00 0.00 2.69
588 690 4.650588 TCTGCAATGATTTGAATTAGGGGG 59.349 41.667 0.00 0.00 34.60 5.40
816 1182 1.745653 GAAAGAATGGGTAGCCTGTGC 59.254 52.381 13.11 0.00 37.95 4.57
825 1191 6.040504 GCGGGAATTAATAAGAAAGAATGGGT 59.959 38.462 0.00 0.00 0.00 4.51
944 1310 1.568597 TCTGGGAGAGGAGAAGGAGAG 59.431 57.143 0.00 0.00 0.00 3.20
1070 1469 1.406887 CCCGGAAACCATCGAATCAGT 60.407 52.381 0.73 0.00 0.00 3.41
1079 1478 0.609131 CAGCTTCACCCGGAAACCAT 60.609 55.000 0.73 0.00 34.44 3.55
1141 1540 4.069232 CAGCCGAAGACCTCGCCA 62.069 66.667 0.00 0.00 46.71 5.69
1200 1599 1.268845 GCGTTGGCGAGAAAGGAAAAA 60.269 47.619 0.00 0.00 41.33 1.94
1302 1713 1.689959 CGAATTCTGCAGCAACCAAC 58.310 50.000 9.47 0.00 0.00 3.77
1303 1714 0.039256 GCGAATTCTGCAGCAACCAA 60.039 50.000 9.47 0.00 0.00 3.67
1304 1715 0.890542 AGCGAATTCTGCAGCAACCA 60.891 50.000 9.47 0.00 33.85 3.67
1305 1716 0.455633 CAGCGAATTCTGCAGCAACC 60.456 55.000 9.47 0.00 33.85 3.77
1379 1790 1.995626 GGGCTAAGGGAGGAGCACA 60.996 63.158 0.00 0.00 41.97 4.57
1388 1799 2.127708 AGTAACAGATGGGGCTAAGGG 58.872 52.381 0.00 0.00 0.00 3.95
1389 1800 3.933861 AAGTAACAGATGGGGCTAAGG 57.066 47.619 0.00 0.00 0.00 2.69
1390 1801 7.283329 AGAATTAAGTAACAGATGGGGCTAAG 58.717 38.462 0.00 0.00 0.00 2.18
1391 1802 7.208064 AGAATTAAGTAACAGATGGGGCTAA 57.792 36.000 0.00 0.00 0.00 3.09
1394 1805 7.454225 AGATAGAATTAAGTAACAGATGGGGC 58.546 38.462 0.00 0.00 0.00 5.80
1399 1810 9.132923 TGACCGAGATAGAATTAAGTAACAGAT 57.867 33.333 0.00 0.00 0.00 2.90
1403 1814 9.194271 GGAATGACCGAGATAGAATTAAGTAAC 57.806 37.037 0.00 0.00 0.00 2.50
1421 1832 1.336755 ACAGCAAAACACGGAATGACC 59.663 47.619 0.00 0.00 0.00 4.02
1454 1865 3.980698 TGGAGGAGGAGGAAGAAAAAGAA 59.019 43.478 0.00 0.00 0.00 2.52
1455 1866 3.328050 GTGGAGGAGGAGGAAGAAAAAGA 59.672 47.826 0.00 0.00 0.00 2.52
1456 1867 3.329225 AGTGGAGGAGGAGGAAGAAAAAG 59.671 47.826 0.00 0.00 0.00 2.27
1457 1868 3.327439 AGTGGAGGAGGAGGAAGAAAAA 58.673 45.455 0.00 0.00 0.00 1.94
1458 1869 2.991580 AGTGGAGGAGGAGGAAGAAAA 58.008 47.619 0.00 0.00 0.00 2.29
1459 1870 2.639839 CAAGTGGAGGAGGAGGAAGAAA 59.360 50.000 0.00 0.00 0.00 2.52
1479 1893 0.977108 AATTCTACCGCCGGTACCCA 60.977 55.000 12.92 0.00 37.09 4.51
1625 2039 1.314534 TATCTGACGAAACGGGGCGA 61.315 55.000 0.00 0.00 0.00 5.54
1652 2066 2.421529 GCGGGTCATCCAAGATAAACCT 60.422 50.000 7.75 0.00 34.36 3.50
1962 2386 4.119583 ACACATGGTGGAGCTAGCTAGC 62.120 54.545 33.96 33.96 42.73 3.42
2021 2445 9.771534 GAGAATAAGAAGTCCACTATAATTGCT 57.228 33.333 0.00 0.00 0.00 3.91
2051 2475 5.890424 AGTGTTTTCCGTTGAGAGAAAAA 57.110 34.783 0.00 0.00 42.04 1.94
2056 2480 4.617959 TGACTAGTGTTTTCCGTTGAGAG 58.382 43.478 0.00 0.00 0.00 3.20
2061 2485 4.586001 TCCTACTGACTAGTGTTTTCCGTT 59.414 41.667 0.00 0.00 37.78 4.44
2062 2486 4.147321 TCCTACTGACTAGTGTTTTCCGT 58.853 43.478 0.00 0.00 37.78 4.69
2064 2488 6.698380 TGATTCCTACTGACTAGTGTTTTCC 58.302 40.000 0.00 0.00 37.78 3.13
2181 2642 8.121086 GTCAAAAGGTGAAAGTTACTGTAGAAC 58.879 37.037 0.00 0.00 38.23 3.01
2220 2681 6.617879 CAGTTTTCATGTCATGTCATGTCAT 58.382 36.000 25.46 16.77 43.70 3.06
2221 2682 5.563280 GCAGTTTTCATGTCATGTCATGTCA 60.563 40.000 25.46 13.92 43.70 3.58
2222 2683 4.855388 GCAGTTTTCATGTCATGTCATGTC 59.145 41.667 25.46 16.63 43.70 3.06
2223 2684 4.521639 AGCAGTTTTCATGTCATGTCATGT 59.478 37.500 25.46 9.26 43.70 3.21
2247 2708 0.240945 GCACCTGTTGATCCAAACGG 59.759 55.000 0.00 0.00 36.38 4.44
2286 2747 0.620990 ATTTTCCCATGCATGCCCCA 60.621 50.000 21.69 3.83 0.00 4.96
2344 2805 3.914312 AGAGTGACTGTGGAATTACACG 58.086 45.455 16.02 12.66 44.21 4.49
2346 2807 7.764443 GCTTAATAGAGTGACTGTGGAATTACA 59.236 37.037 0.00 0.00 0.00 2.41
2349 2810 6.711277 TGCTTAATAGAGTGACTGTGGAATT 58.289 36.000 0.00 0.00 0.00 2.17
2350 2811 6.299805 TGCTTAATAGAGTGACTGTGGAAT 57.700 37.500 0.00 0.00 0.00 3.01
2352 2813 5.939764 ATGCTTAATAGAGTGACTGTGGA 57.060 39.130 0.00 0.00 0.00 4.02
2353 2814 6.992063 AAATGCTTAATAGAGTGACTGTGG 57.008 37.500 0.00 0.00 0.00 4.17
2359 2820 9.773328 CGAAAATGAAAATGCTTAATAGAGTGA 57.227 29.630 0.00 0.00 0.00 3.41
2360 2821 9.773328 TCGAAAATGAAAATGCTTAATAGAGTG 57.227 29.630 0.00 0.00 0.00 3.51
2409 2889 6.311690 GGTACTGCTTCTTTGAGATCTGTAAC 59.688 42.308 0.00 0.00 0.00 2.50
2573 3058 2.151202 TCGCAGTGGAAGAAATTGTCC 58.849 47.619 0.00 0.00 0.00 4.02
2579 3064 3.380142 GCATTTTTCGCAGTGGAAGAAA 58.620 40.909 0.00 0.00 32.76 2.52
2626 3111 3.281341 TGCCATGAAAAGCTTACAACG 57.719 42.857 0.00 0.00 0.00 4.10
2673 3158 5.045942 TCAGTGAACAAGGGCATGATTACTA 60.046 40.000 0.00 0.00 0.00 1.82
2676 3161 4.009675 GTCAGTGAACAAGGGCATGATTA 58.990 43.478 0.00 0.00 0.00 1.75
2788 3273 1.534595 GGCATGGATTACAGCAAAGCG 60.535 52.381 0.00 0.00 0.00 4.68
2797 3282 3.883489 GGAGTGTTTAGGGCATGGATTAC 59.117 47.826 0.00 0.00 0.00 1.89
2803 3288 2.787473 TCAGGAGTGTTTAGGGCATG 57.213 50.000 0.00 0.00 0.00 4.06
2805 3290 3.806949 AAATCAGGAGTGTTTAGGGCA 57.193 42.857 0.00 0.00 0.00 5.36
2826 3311 7.437862 GGTTGTCTTTACAAATCAAGAATTGCA 59.562 33.333 0.00 0.00 45.98 4.08
2829 3314 9.480053 CATGGTTGTCTTTACAAATCAAGAATT 57.520 29.630 0.00 0.00 46.84 2.17
2839 3324 6.214191 TCAAAAGCATGGTTGTCTTTACAA 57.786 33.333 11.56 0.00 43.32 2.41
2841 3326 6.088085 CGATTCAAAAGCATGGTTGTCTTTAC 59.912 38.462 11.56 0.60 32.54 2.01
2856 3341 8.607459 AGTCAAATAGATACTGCGATTCAAAAG 58.393 33.333 0.00 0.00 0.00 2.27
2863 3348 5.453648 GTCGAGTCAAATAGATACTGCGAT 58.546 41.667 0.00 0.00 31.02 4.58
2872 3357 3.767131 TGTCCATGGTCGAGTCAAATAGA 59.233 43.478 12.58 0.00 0.00 1.98
2992 3477 1.303309 CCCTCTCGTCCATTTCATGC 58.697 55.000 0.00 0.00 0.00 4.06
3145 3630 3.196469 TCTTCTGGTAGAACTCTGGCATG 59.804 47.826 0.00 0.00 29.89 4.06
3182 3697 2.954989 TGCATGCGGCCATCTTATTAAA 59.045 40.909 14.09 0.00 43.89 1.52
3183 3698 2.580962 TGCATGCGGCCATCTTATTAA 58.419 42.857 14.09 0.00 43.89 1.40
3184 3699 2.268762 TGCATGCGGCCATCTTATTA 57.731 45.000 14.09 0.00 43.89 0.98
3185 3700 1.542915 GATGCATGCGGCCATCTTATT 59.457 47.619 14.09 0.00 43.89 1.40
3186 3701 1.171308 GATGCATGCGGCCATCTTAT 58.829 50.000 14.09 0.00 43.89 1.73
3187 3702 1.229975 CGATGCATGCGGCCATCTTA 61.230 55.000 14.09 0.00 43.89 2.10
3189 3704 2.976350 CGATGCATGCGGCCATCT 60.976 61.111 14.09 0.00 43.89 2.90
3192 3707 3.507924 GAACGATGCATGCGGCCA 61.508 61.111 14.09 0.00 43.89 5.36
3193 3708 3.204827 AGAACGATGCATGCGGCC 61.205 61.111 14.09 3.42 43.89 6.13
3194 3709 1.779025 ATCAGAACGATGCATGCGGC 61.779 55.000 14.09 6.36 45.13 6.53
3196 3711 3.432759 CATCAGAACGATGCATGCG 57.567 52.632 14.09 10.48 44.95 4.73
3203 3718 1.202463 CGGCCTCTTCATCAGAACGAT 60.202 52.381 0.00 0.00 33.27 3.73
3204 3719 0.173481 CGGCCTCTTCATCAGAACGA 59.827 55.000 0.00 0.00 0.00 3.85
3205 3720 0.807667 CCGGCCTCTTCATCAGAACG 60.808 60.000 0.00 0.00 0.00 3.95
3206 3721 0.462759 CCCGGCCTCTTCATCAGAAC 60.463 60.000 0.00 0.00 0.00 3.01
3207 3722 1.626356 CCCCGGCCTCTTCATCAGAA 61.626 60.000 0.00 0.00 0.00 3.02
3208 3723 2.066393 CCCCGGCCTCTTCATCAGA 61.066 63.158 0.00 0.00 0.00 3.27
3209 3724 2.507944 CCCCGGCCTCTTCATCAG 59.492 66.667 0.00 0.00 0.00 2.90
3210 3725 2.539277 TACCCCCGGCCTCTTCATCA 62.539 60.000 0.00 0.00 0.00 3.07
3211 3726 1.342672 TTACCCCCGGCCTCTTCATC 61.343 60.000 0.00 0.00 0.00 2.92
3212 3727 0.697854 ATTACCCCCGGCCTCTTCAT 60.698 55.000 0.00 0.00 0.00 2.57
3213 3728 1.307517 ATTACCCCCGGCCTCTTCA 60.308 57.895 0.00 0.00 0.00 3.02
3214 3729 1.450642 GATTACCCCCGGCCTCTTC 59.549 63.158 0.00 0.00 0.00 2.87
3215 3730 2.076803 GGATTACCCCCGGCCTCTT 61.077 63.158 0.00 0.00 0.00 2.85
3216 3731 2.447959 GGATTACCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
3217 3732 2.053259 GAAGGATTACCCCCGGCCTC 62.053 65.000 0.00 0.00 36.73 4.70
3218 3733 2.043941 AAGGATTACCCCCGGCCT 59.956 61.111 0.00 0.00 36.73 5.19
3219 3734 1.642513 AAGAAGGATTACCCCCGGCC 61.643 60.000 0.00 0.00 36.73 6.13
3220 3735 0.257905 AAAGAAGGATTACCCCCGGC 59.742 55.000 0.00 0.00 36.73 6.13
3221 3736 2.025699 TGAAAAGAAGGATTACCCCCGG 60.026 50.000 0.00 0.00 36.73 5.73
3222 3737 3.359695 TGAAAAGAAGGATTACCCCCG 57.640 47.619 0.00 0.00 36.73 5.73
3223 3738 6.428083 TTTTTGAAAAGAAGGATTACCCCC 57.572 37.500 0.00 0.00 36.73 5.40
3245 3760 9.435688 GGCAAGATGGTTACATATTTTTCTTTT 57.564 29.630 0.00 0.00 36.45 2.27
3246 3761 8.592809 TGGCAAGATGGTTACATATTTTTCTTT 58.407 29.630 0.00 0.00 36.45 2.52
3247 3762 8.133024 TGGCAAGATGGTTACATATTTTTCTT 57.867 30.769 0.00 0.00 36.45 2.52
3248 3763 7.716799 TGGCAAGATGGTTACATATTTTTCT 57.283 32.000 0.00 0.00 36.45 2.52
3249 3764 8.819974 CATTGGCAAGATGGTTACATATTTTTC 58.180 33.333 5.96 0.00 36.45 2.29
3250 3765 7.280652 GCATTGGCAAGATGGTTACATATTTTT 59.719 33.333 5.96 0.00 36.45 1.94
3251 3766 6.762661 GCATTGGCAAGATGGTTACATATTTT 59.237 34.615 5.96 0.00 36.45 1.82
3252 3767 6.098695 AGCATTGGCAAGATGGTTACATATTT 59.901 34.615 5.96 0.00 44.61 1.40
3253 3768 5.599656 AGCATTGGCAAGATGGTTACATATT 59.400 36.000 5.96 0.00 44.61 1.28
3254 3769 5.010314 CAGCATTGGCAAGATGGTTACATAT 59.990 40.000 5.96 0.00 44.61 1.78
3255 3770 4.338964 CAGCATTGGCAAGATGGTTACATA 59.661 41.667 5.96 0.00 44.61 2.29
3303 3818 6.100424 ACCTGGAAGAAGAAGAAGAAGAAGAA 59.900 38.462 0.00 0.00 34.07 2.52
3304 3819 5.604650 ACCTGGAAGAAGAAGAAGAAGAAGA 59.395 40.000 0.00 0.00 34.07 2.87
3305 3820 5.863965 ACCTGGAAGAAGAAGAAGAAGAAG 58.136 41.667 0.00 0.00 34.07 2.85
3306 3821 5.896073 ACCTGGAAGAAGAAGAAGAAGAA 57.104 39.130 0.00 0.00 34.07 2.52
3307 3822 6.070538 CCATACCTGGAAGAAGAAGAAGAAGA 60.071 42.308 0.00 0.00 46.37 2.87
3308 3823 6.112058 CCATACCTGGAAGAAGAAGAAGAAG 58.888 44.000 0.00 0.00 46.37 2.85
3377 3895 1.444119 GACACTTTTGCGCCAGGACA 61.444 55.000 4.18 0.00 0.00 4.02
3473 3991 1.884579 GTTGTACTGTCGTCTCCTCCA 59.115 52.381 0.00 0.00 0.00 3.86
3621 4139 1.170290 TGTTCACAGAGGAGACGCGA 61.170 55.000 15.93 0.00 34.13 5.87
3757 4276 1.302366 GATGATCAAGCGCACCATGA 58.698 50.000 11.47 9.00 0.00 3.07
3758 4277 0.309922 GGATGATCAAGCGCACCATG 59.690 55.000 11.47 2.85 0.00 3.66
3759 4278 0.820891 GGGATGATCAAGCGCACCAT 60.821 55.000 11.47 4.89 0.00 3.55
3760 4279 1.451927 GGGATGATCAAGCGCACCA 60.452 57.895 11.47 0.00 0.00 4.17
3761 4280 2.189499 GGGGATGATCAAGCGCACC 61.189 63.158 11.47 0.00 0.00 5.01
3762 4281 1.153086 AGGGGATGATCAAGCGCAC 60.153 57.895 11.47 0.00 0.00 5.34
3763 4282 1.146930 GAGGGGATGATCAAGCGCA 59.853 57.895 11.47 0.00 0.00 6.09
3764 4283 0.883814 CAGAGGGGATGATCAAGCGC 60.884 60.000 0.00 0.00 0.00 5.92
3765 4284 0.755079 TCAGAGGGGATGATCAAGCG 59.245 55.000 0.00 0.00 0.00 4.68
3766 4285 3.055240 CCTATCAGAGGGGATGATCAAGC 60.055 52.174 0.00 0.00 42.39 4.01
3767 4286 4.822685 CCTATCAGAGGGGATGATCAAG 57.177 50.000 0.00 0.00 42.39 3.02
3787 4306 2.185004 ACCACACAACAGCTCATACC 57.815 50.000 0.00 0.00 0.00 2.73
3795 4314 1.806542 GGCTCATGTACCACACAACAG 59.193 52.381 0.00 0.00 41.55 3.16
3813 4332 1.032014 CAGGAGCTCTCTAGACAGGC 58.968 60.000 14.64 0.00 0.00 4.85
3823 4342 3.320610 TCATAGCCTTACAGGAGCTCT 57.679 47.619 14.64 0.00 37.67 4.09
3883 4402 6.032956 TCGAAGTAGCAATGGAGTTCTAAA 57.967 37.500 0.00 0.00 0.00 1.85
3945 4464 3.508793 AGATCACAGAAGCATGTTTTGGG 59.491 43.478 0.00 0.00 0.00 4.12
4136 4656 9.804758 AAGAGTACTCCTTAATTAGTGATTTCG 57.195 33.333 19.38 0.00 0.00 3.46
4139 4659 9.384764 GCAAAGAGTACTCCTTAATTAGTGATT 57.615 33.333 19.38 0.00 0.00 2.57
4140 4660 7.707035 CGCAAAGAGTACTCCTTAATTAGTGAT 59.293 37.037 19.38 0.00 0.00 3.06
4141 4661 7.033791 CGCAAAGAGTACTCCTTAATTAGTGA 58.966 38.462 19.38 0.00 0.00 3.41
4142 4662 6.255887 CCGCAAAGAGTACTCCTTAATTAGTG 59.744 42.308 19.38 7.08 0.00 2.74
4143 4663 6.154021 TCCGCAAAGAGTACTCCTTAATTAGT 59.846 38.462 19.38 0.00 0.00 2.24
4144 4664 6.570692 TCCGCAAAGAGTACTCCTTAATTAG 58.429 40.000 19.38 2.05 0.00 1.73
4145 4665 6.379133 TCTCCGCAAAGAGTACTCCTTAATTA 59.621 38.462 19.38 0.48 35.28 1.40
4146 4666 5.187186 TCTCCGCAAAGAGTACTCCTTAATT 59.813 40.000 19.38 3.89 35.28 1.40
4147 4667 4.710375 TCTCCGCAAAGAGTACTCCTTAAT 59.290 41.667 19.38 0.00 35.28 1.40
4148 4668 4.084287 TCTCCGCAAAGAGTACTCCTTAA 58.916 43.478 19.38 0.00 35.28 1.85
4149 4669 3.693807 TCTCCGCAAAGAGTACTCCTTA 58.306 45.455 19.38 0.00 35.28 2.69
4150 4670 2.526432 TCTCCGCAAAGAGTACTCCTT 58.474 47.619 19.38 10.19 35.28 3.36
4151 4671 2.217510 TCTCCGCAAAGAGTACTCCT 57.782 50.000 19.38 3.30 35.28 3.69
4152 4672 2.427453 TGATCTCCGCAAAGAGTACTCC 59.573 50.000 19.38 3.08 35.28 3.85
4153 4673 3.129638 AGTGATCTCCGCAAAGAGTACTC 59.870 47.826 15.41 15.41 35.28 2.59
4154 4674 3.093057 AGTGATCTCCGCAAAGAGTACT 58.907 45.455 0.00 0.00 35.28 2.73
4155 4675 3.440228 GAGTGATCTCCGCAAAGAGTAC 58.560 50.000 0.00 0.00 35.28 2.73
4156 4676 3.784701 GAGTGATCTCCGCAAAGAGTA 57.215 47.619 0.00 0.00 35.28 2.59
4157 4677 2.663826 GAGTGATCTCCGCAAAGAGT 57.336 50.000 0.00 0.00 35.28 3.24
4167 4687 0.833949 GGGGGAGTTGGAGTGATCTC 59.166 60.000 0.00 0.00 39.76 2.75
4168 4688 0.119155 TGGGGGAGTTGGAGTGATCT 59.881 55.000 0.00 0.00 0.00 2.75
4169 4689 0.543749 CTGGGGGAGTTGGAGTGATC 59.456 60.000 0.00 0.00 0.00 2.92
4170 4690 0.916358 CCTGGGGGAGTTGGAGTGAT 60.916 60.000 0.00 0.00 33.58 3.06
4171 4691 1.538876 CCTGGGGGAGTTGGAGTGA 60.539 63.158 0.00 0.00 33.58 3.41
4172 4692 1.427072 AACCTGGGGGAGTTGGAGTG 61.427 60.000 0.00 0.00 36.25 3.51
4173 4693 1.072930 AACCTGGGGGAGTTGGAGT 60.073 57.895 0.00 0.00 36.25 3.85
4174 4694 1.380302 CAACCTGGGGGAGTTGGAG 59.620 63.158 0.00 0.00 39.73 3.86
4175 4695 2.840753 GCAACCTGGGGGAGTTGGA 61.841 63.158 0.00 0.00 42.87 3.53
4176 4696 2.283173 GCAACCTGGGGGAGTTGG 60.283 66.667 0.00 0.00 42.87 3.77
4177 4697 2.672996 CGCAACCTGGGGGAGTTG 60.673 66.667 0.00 0.00 44.93 3.16
4178 4698 2.852075 TCGCAACCTGGGGGAGTT 60.852 61.111 0.00 0.00 36.25 3.01
4179 4699 3.637273 GTCGCAACCTGGGGGAGT 61.637 66.667 0.00 0.00 36.25 3.85
4180 4700 3.190738 TTGTCGCAACCTGGGGGAG 62.191 63.158 0.00 0.00 36.25 4.30
4181 4701 3.172106 TTGTCGCAACCTGGGGGA 61.172 61.111 0.00 0.00 36.25 4.81
4182 4702 2.672996 CTTGTCGCAACCTGGGGG 60.673 66.667 0.00 0.00 38.88 5.40
4183 4703 2.113139 ACTTGTCGCAACCTGGGG 59.887 61.111 0.00 0.00 0.00 4.96
4184 4704 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
4185 4705 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
4186 4706 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
4187 4707 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
4215 4735 1.219646 CAGGTTGCAACAAATGGCAC 58.780 50.000 29.55 10.66 40.23 5.01
4216 4736 0.829333 ACAGGTTGCAACAAATGGCA 59.171 45.000 29.55 0.00 38.46 4.92
4217 4737 1.202510 TCACAGGTTGCAACAAATGGC 60.203 47.619 29.55 12.10 0.00 4.40
4218 4738 2.101249 ACTCACAGGTTGCAACAAATGG 59.899 45.455 29.55 17.82 0.00 3.16
4219 4739 3.441496 ACTCACAGGTTGCAACAAATG 57.559 42.857 29.55 24.45 0.00 2.32
4220 4740 4.470334 AAACTCACAGGTTGCAACAAAT 57.530 36.364 29.55 13.10 0.00 2.32
4221 4741 3.951775 AAACTCACAGGTTGCAACAAA 57.048 38.095 29.55 9.68 0.00 2.83
4222 4742 3.367910 GGAAAACTCACAGGTTGCAACAA 60.368 43.478 29.55 9.35 0.00 2.83
4223 4743 2.165437 GGAAAACTCACAGGTTGCAACA 59.835 45.455 29.55 9.07 0.00 3.33
4224 4744 2.427095 AGGAAAACTCACAGGTTGCAAC 59.573 45.455 21.59 21.59 0.00 4.17
4225 4745 2.733956 AGGAAAACTCACAGGTTGCAA 58.266 42.857 0.00 0.00 0.00 4.08
4226 4746 2.435372 AGGAAAACTCACAGGTTGCA 57.565 45.000 0.00 0.00 0.00 4.08
4227 4747 3.801114 AAAGGAAAACTCACAGGTTGC 57.199 42.857 0.00 0.00 0.00 4.17
4273 4793 7.302524 TGAACGCATGGTTTAAGAGATAAAAC 58.697 34.615 0.00 0.00 40.87 2.43
4274 4794 7.441890 TGAACGCATGGTTTAAGAGATAAAA 57.558 32.000 0.00 0.00 39.50 1.52
4275 4795 7.441890 TTGAACGCATGGTTTAAGAGATAAA 57.558 32.000 0.00 0.00 39.50 1.40
4276 4796 7.441890 TTTGAACGCATGGTTTAAGAGATAA 57.558 32.000 0.00 0.00 39.50 1.75
4277 4797 7.552687 AGATTTGAACGCATGGTTTAAGAGATA 59.447 33.333 0.00 0.00 39.50 1.98
4278 4798 5.957842 TTTGAACGCATGGTTTAAGAGAT 57.042 34.783 0.00 0.00 39.50 2.75
4279 4799 5.705441 AGATTTGAACGCATGGTTTAAGAGA 59.295 36.000 0.00 0.00 39.50 3.10
4280 4800 5.942872 AGATTTGAACGCATGGTTTAAGAG 58.057 37.500 0.00 0.00 39.50 2.85
4281 4801 5.390461 CGAGATTTGAACGCATGGTTTAAGA 60.390 40.000 0.00 0.00 39.50 2.10
4282 4802 4.788100 CGAGATTTGAACGCATGGTTTAAG 59.212 41.667 0.00 0.00 39.50 1.85
4283 4803 4.452795 TCGAGATTTGAACGCATGGTTTAA 59.547 37.500 0.00 0.00 39.50 1.52
4284 4804 3.997681 TCGAGATTTGAACGCATGGTTTA 59.002 39.130 0.00 0.00 39.50 2.01
4285 4805 2.811431 TCGAGATTTGAACGCATGGTTT 59.189 40.909 0.00 0.00 39.50 3.27
4286 4806 2.422597 TCGAGATTTGAACGCATGGTT 58.577 42.857 0.00 0.00 42.96 3.67
4287 4807 2.093306 TCGAGATTTGAACGCATGGT 57.907 45.000 0.00 0.00 0.00 3.55
4288 4808 2.476185 GGTTCGAGATTTGAACGCATGG 60.476 50.000 0.00 0.00 45.19 3.66
4289 4809 2.774007 GGTTCGAGATTTGAACGCATG 58.226 47.619 3.75 0.00 45.19 4.06
4290 4810 1.393539 CGGTTCGAGATTTGAACGCAT 59.606 47.619 3.75 0.00 45.19 4.73
4291 4811 0.787787 CGGTTCGAGATTTGAACGCA 59.212 50.000 3.75 0.00 45.19 5.24
4292 4812 0.518559 GCGGTTCGAGATTTGAACGC 60.519 55.000 0.00 0.00 45.19 4.84
4293 4813 1.068474 AGCGGTTCGAGATTTGAACG 58.932 50.000 3.75 0.00 45.19 3.95
4294 4814 3.059188 TGAAAGCGGTTCGAGATTTGAAC 60.059 43.478 0.00 1.37 43.87 3.18
4295 4815 3.059188 GTGAAAGCGGTTCGAGATTTGAA 60.059 43.478 0.00 0.00 39.30 2.69
4296 4816 2.478894 GTGAAAGCGGTTCGAGATTTGA 59.521 45.455 0.00 0.00 39.30 2.69
4297 4817 2.480419 AGTGAAAGCGGTTCGAGATTTG 59.520 45.455 0.00 0.00 39.30 2.32
4298 4818 2.767505 AGTGAAAGCGGTTCGAGATTT 58.232 42.857 0.00 0.00 39.30 2.17
4299 4819 2.457366 AGTGAAAGCGGTTCGAGATT 57.543 45.000 0.00 0.00 39.30 2.40
4300 4820 3.802948 ATAGTGAAAGCGGTTCGAGAT 57.197 42.857 0.00 0.00 39.30 2.75
4301 4821 3.250744 CAATAGTGAAAGCGGTTCGAGA 58.749 45.455 0.00 0.00 39.30 4.04
4302 4822 2.348666 CCAATAGTGAAAGCGGTTCGAG 59.651 50.000 0.00 0.00 39.30 4.04
4303 4823 2.028839 TCCAATAGTGAAAGCGGTTCGA 60.029 45.455 0.00 0.00 39.30 3.71
4304 4824 2.343101 TCCAATAGTGAAAGCGGTTCG 58.657 47.619 0.00 0.00 39.30 3.95
4305 4825 4.201920 GGAATCCAATAGTGAAAGCGGTTC 60.202 45.833 0.00 0.00 36.70 3.62
4306 4826 3.694566 GGAATCCAATAGTGAAAGCGGTT 59.305 43.478 0.00 0.00 0.00 4.44
4307 4827 3.054361 AGGAATCCAATAGTGAAAGCGGT 60.054 43.478 0.61 0.00 0.00 5.68
4308 4828 3.545703 AGGAATCCAATAGTGAAAGCGG 58.454 45.455 0.61 0.00 0.00 5.52
4309 4829 3.246226 CGAGGAATCCAATAGTGAAAGCG 59.754 47.826 0.61 0.00 0.00 4.68
4310 4830 3.002759 GCGAGGAATCCAATAGTGAAAGC 59.997 47.826 0.61 0.00 0.00 3.51
4311 4831 3.246226 CGCGAGGAATCCAATAGTGAAAG 59.754 47.826 0.00 0.00 0.00 2.62
4312 4832 3.194861 CGCGAGGAATCCAATAGTGAAA 58.805 45.455 0.00 0.00 0.00 2.69
4313 4833 2.167693 ACGCGAGGAATCCAATAGTGAA 59.832 45.455 15.93 0.00 0.00 3.18
4314 4834 1.754803 ACGCGAGGAATCCAATAGTGA 59.245 47.619 15.93 0.00 0.00 3.41
4315 4835 2.128035 GACGCGAGGAATCCAATAGTG 58.872 52.381 15.93 0.00 0.00 2.74
4316 4836 1.269102 CGACGCGAGGAATCCAATAGT 60.269 52.381 15.93 0.00 0.00 2.12
4317 4837 1.001706 TCGACGCGAGGAATCCAATAG 60.002 52.381 15.93 0.00 0.00 1.73
4318 4838 1.026584 TCGACGCGAGGAATCCAATA 58.973 50.000 15.93 0.00 0.00 1.90
4319 4839 1.813859 TCGACGCGAGGAATCCAAT 59.186 52.632 15.93 0.00 0.00 3.16
4320 4840 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
4329 4849 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
4330 4850 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
4331 4851 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
4332 4852 5.683743 GGATCTAGTTTTGAAGATCTCGACG 59.316 44.000 11.05 0.00 37.77 5.12
4333 4853 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
4334 4854 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
4335 4855 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
4336 4856 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
4337 4857 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
4338 4858 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
4339 4859 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
4340 4860 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
4341 4861 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
4342 4862 7.775093 CCTATCAACATGGGATCTAGTTTTGAA 59.225 37.037 5.52 0.00 32.06 2.69
4343 4863 7.092444 ACCTATCAACATGGGATCTAGTTTTGA 60.092 37.037 5.52 0.00 34.16 2.69
4344 4864 7.056635 ACCTATCAACATGGGATCTAGTTTTG 58.943 38.462 5.52 0.00 34.16 2.44
4345 4865 7.213178 ACCTATCAACATGGGATCTAGTTTT 57.787 36.000 5.52 0.00 34.16 2.43
4346 4866 6.831664 ACCTATCAACATGGGATCTAGTTT 57.168 37.500 5.52 0.00 34.16 2.66
4347 4867 6.831664 AACCTATCAACATGGGATCTAGTT 57.168 37.500 5.52 5.97 34.16 2.24
4348 4868 6.831664 AAACCTATCAACATGGGATCTAGT 57.168 37.500 5.52 0.98 34.16 2.57
4349 4869 7.227512 GTCAAAACCTATCAACATGGGATCTAG 59.772 40.741 5.52 0.40 34.16 2.43
4350 4870 7.054124 GTCAAAACCTATCAACATGGGATCTA 58.946 38.462 5.52 0.00 34.16 1.98
4351 4871 5.888161 GTCAAAACCTATCAACATGGGATCT 59.112 40.000 5.52 0.00 34.16 2.75
4352 4872 5.220854 CGTCAAAACCTATCAACATGGGATC 60.221 44.000 5.52 0.00 34.16 3.36
4353 4873 4.640201 CGTCAAAACCTATCAACATGGGAT 59.360 41.667 0.00 2.37 34.16 3.85
4354 4874 4.006989 CGTCAAAACCTATCAACATGGGA 58.993 43.478 0.00 0.00 34.16 4.37
4355 4875 4.006989 TCGTCAAAACCTATCAACATGGG 58.993 43.478 0.00 0.00 36.68 4.00
4356 4876 5.181245 AGTTCGTCAAAACCTATCAACATGG 59.819 40.000 0.00 0.00 0.00 3.66
4357 4877 6.241207 AGTTCGTCAAAACCTATCAACATG 57.759 37.500 0.00 0.00 0.00 3.21
4358 4878 6.877611 AAGTTCGTCAAAACCTATCAACAT 57.122 33.333 0.00 0.00 0.00 2.71
4359 4879 6.687081 AAAGTTCGTCAAAACCTATCAACA 57.313 33.333 0.00 0.00 0.00 3.33
4360 4880 7.980742 AAAAAGTTCGTCAAAACCTATCAAC 57.019 32.000 0.00 0.00 0.00 3.18
4406 4926 1.338655 CATGTTCCCGGTTCGGTTTTT 59.661 47.619 0.00 0.00 46.80 1.94
4407 4927 0.955905 CATGTTCCCGGTTCGGTTTT 59.044 50.000 0.00 0.00 46.80 2.43
4408 4928 0.179012 ACATGTTCCCGGTTCGGTTT 60.179 50.000 0.00 0.00 46.80 3.27
4409 4929 0.179012 AACATGTTCCCGGTTCGGTT 60.179 50.000 4.92 0.00 46.80 4.44
4410 4930 0.179012 AAACATGTTCCCGGTTCGGT 60.179 50.000 12.39 0.00 46.80 4.69
4412 4932 2.785713 AAAAACATGTTCCCGGTTCG 57.214 45.000 12.39 0.00 0.00 3.95
4437 4957 2.391389 GCGTGCCTCCTTCGGAAAG 61.391 63.158 0.00 0.00 0.00 2.62
4438 4958 2.358247 GCGTGCCTCCTTCGGAAA 60.358 61.111 0.00 0.00 0.00 3.13
4439 4959 4.388499 GGCGTGCCTCCTTCGGAA 62.388 66.667 2.98 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.