Multiple sequence alignment - TraesCS1B01G159300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G159300 | chr1B | 100.000 | 2318 | 0 | 0 | 1 | 2318 | 270328150 | 270330467 | 0.000000e+00 | 4281 |
1 | TraesCS1B01G159300 | chr1B | 95.395 | 152 | 4 | 2 | 2168 | 2318 | 582799196 | 582799345 | 2.980000e-59 | 239 |
2 | TraesCS1B01G159300 | chr2B | 92.899 | 1352 | 86 | 3 | 1 | 1344 | 217269680 | 217268331 | 0.000000e+00 | 1956 |
3 | TraesCS1B01G159300 | chr2B | 96.000 | 150 | 4 | 1 | 2169 | 2318 | 355166752 | 355166605 | 2.300000e-60 | 243 |
4 | TraesCS1B01G159300 | chr2B | 95.973 | 149 | 4 | 1 | 2170 | 2318 | 582332465 | 582332319 | 8.280000e-60 | 241 |
5 | TraesCS1B01G159300 | chr2B | 95.333 | 150 | 5 | 2 | 2170 | 2318 | 379686014 | 379686162 | 1.070000e-58 | 237 |
6 | TraesCS1B01G159300 | chr4D | 91.057 | 1353 | 109 | 5 | 1 | 1344 | 486555473 | 486556822 | 0.000000e+00 | 1818 |
7 | TraesCS1B01G159300 | chr7A | 85.314 | 1355 | 184 | 12 | 1 | 1344 | 580627219 | 580628569 | 0.000000e+00 | 1386 |
8 | TraesCS1B01G159300 | chr6B | 92.897 | 901 | 54 | 2 | 1 | 891 | 152381355 | 152380455 | 0.000000e+00 | 1301 |
9 | TraesCS1B01G159300 | chr6B | 94.298 | 456 | 24 | 2 | 889 | 1344 | 152376010 | 152375557 | 0.000000e+00 | 697 |
10 | TraesCS1B01G159300 | chr7D | 88.511 | 1088 | 95 | 13 | 1 | 1078 | 154937595 | 154936528 | 0.000000e+00 | 1290 |
11 | TraesCS1B01G159300 | chr7D | 81.370 | 1358 | 230 | 19 | 1 | 1344 | 609177419 | 609178767 | 0.000000e+00 | 1085 |
12 | TraesCS1B01G159300 | chr1A | 93.502 | 831 | 50 | 4 | 1341 | 2169 | 243605094 | 243604266 | 0.000000e+00 | 1232 |
13 | TraesCS1B01G159300 | chr3D | 83.222 | 1353 | 216 | 6 | 1 | 1344 | 565242811 | 565244161 | 0.000000e+00 | 1230 |
14 | TraesCS1B01G159300 | chr3D | 89.313 | 524 | 55 | 1 | 825 | 1348 | 28585406 | 28584884 | 0.000000e+00 | 656 |
15 | TraesCS1B01G159300 | chr3D | 86.296 | 270 | 34 | 3 | 373 | 641 | 28585895 | 28585628 | 8.100000e-75 | 291 |
16 | TraesCS1B01G159300 | chr3A | 81.987 | 1349 | 230 | 6 | 3 | 1343 | 21354198 | 21352855 | 0.000000e+00 | 1133 |
17 | TraesCS1B01G159300 | chr3A | 82.425 | 734 | 115 | 7 | 621 | 1344 | 112923285 | 112924014 | 1.510000e-176 | 628 |
18 | TraesCS1B01G159300 | chr5A | 80.987 | 1357 | 231 | 15 | 1 | 1344 | 608863736 | 608862394 | 0.000000e+00 | 1051 |
19 | TraesCS1B01G159300 | chr1D | 92.453 | 371 | 26 | 2 | 1799 | 2169 | 195184381 | 195184013 | 1.580000e-146 | 529 |
20 | TraesCS1B01G159300 | chr5B | 95.973 | 149 | 4 | 1 | 2170 | 2318 | 58314366 | 58314512 | 8.280000e-60 | 241 |
21 | TraesCS1B01G159300 | chr5B | 94.667 | 150 | 6 | 1 | 2169 | 2318 | 215955789 | 215955642 | 4.980000e-57 | 231 |
22 | TraesCS1B01G159300 | chr7B | 95.302 | 149 | 5 | 1 | 2170 | 2318 | 227065545 | 227065399 | 3.850000e-58 | 235 |
23 | TraesCS1B01G159300 | chr4B | 95.302 | 149 | 5 | 1 | 2170 | 2318 | 471424934 | 471424788 | 3.850000e-58 | 235 |
24 | TraesCS1B01G159300 | chr3B | 95.302 | 149 | 5 | 1 | 2170 | 2318 | 303829693 | 303829547 | 3.850000e-58 | 235 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G159300 | chr1B | 270328150 | 270330467 | 2317 | False | 4281.0 | 4281 | 100.0000 | 1 | 2318 | 1 | chr1B.!!$F1 | 2317 |
1 | TraesCS1B01G159300 | chr2B | 217268331 | 217269680 | 1349 | True | 1956.0 | 1956 | 92.8990 | 1 | 1344 | 1 | chr2B.!!$R1 | 1343 |
2 | TraesCS1B01G159300 | chr4D | 486555473 | 486556822 | 1349 | False | 1818.0 | 1818 | 91.0570 | 1 | 1344 | 1 | chr4D.!!$F1 | 1343 |
3 | TraesCS1B01G159300 | chr7A | 580627219 | 580628569 | 1350 | False | 1386.0 | 1386 | 85.3140 | 1 | 1344 | 1 | chr7A.!!$F1 | 1343 |
4 | TraesCS1B01G159300 | chr6B | 152380455 | 152381355 | 900 | True | 1301.0 | 1301 | 92.8970 | 1 | 891 | 1 | chr6B.!!$R2 | 890 |
5 | TraesCS1B01G159300 | chr7D | 154936528 | 154937595 | 1067 | True | 1290.0 | 1290 | 88.5110 | 1 | 1078 | 1 | chr7D.!!$R1 | 1077 |
6 | TraesCS1B01G159300 | chr7D | 609177419 | 609178767 | 1348 | False | 1085.0 | 1085 | 81.3700 | 1 | 1344 | 1 | chr7D.!!$F1 | 1343 |
7 | TraesCS1B01G159300 | chr1A | 243604266 | 243605094 | 828 | True | 1232.0 | 1232 | 93.5020 | 1341 | 2169 | 1 | chr1A.!!$R1 | 828 |
8 | TraesCS1B01G159300 | chr3D | 565242811 | 565244161 | 1350 | False | 1230.0 | 1230 | 83.2220 | 1 | 1344 | 1 | chr3D.!!$F1 | 1343 |
9 | TraesCS1B01G159300 | chr3D | 28584884 | 28585895 | 1011 | True | 473.5 | 656 | 87.8045 | 373 | 1348 | 2 | chr3D.!!$R1 | 975 |
10 | TraesCS1B01G159300 | chr3A | 21352855 | 21354198 | 1343 | True | 1133.0 | 1133 | 81.9870 | 3 | 1343 | 1 | chr3A.!!$R1 | 1340 |
11 | TraesCS1B01G159300 | chr3A | 112923285 | 112924014 | 729 | False | 628.0 | 628 | 82.4250 | 621 | 1344 | 1 | chr3A.!!$F1 | 723 |
12 | TraesCS1B01G159300 | chr5A | 608862394 | 608863736 | 1342 | True | 1051.0 | 1051 | 80.9870 | 1 | 1344 | 1 | chr5A.!!$R1 | 1343 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
89 | 90 | 0.181824 | ATATAAACGGGGCTTGGCGT | 59.818 | 50.0 | 0.0 | 0.0 | 0.0 | 5.68 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1699 | 1741 | 0.389166 | CAACTCTCCTCACCACGAGC | 60.389 | 60.0 | 0.0 | 0.0 | 40.78 | 5.03 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
89 | 90 | 0.181824 | ATATAAACGGGGCTTGGCGT | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
217 | 220 | 5.541098 | AAAAGCGGTCTATTTTCGGTAAG | 57.459 | 39.130 | 0.00 | 0.00 | 34.15 | 2.34 |
240 | 243 | 2.158755 | AGTGCTTACAGACTTGCAACCT | 60.159 | 45.455 | 0.00 | 0.00 | 37.17 | 3.50 |
401 | 404 | 3.131933 | TGGCTACACAAAAGTGCAAACAT | 59.868 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
403 | 406 | 3.421888 | GCTACACAAAAGTGCAAACATCG | 59.578 | 43.478 | 0.00 | 0.00 | 0.00 | 3.84 |
405 | 408 | 2.165437 | ACACAAAAGTGCAAACATCGGT | 59.835 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
425 | 428 | 1.565156 | GACACTTGCCAACGCGATCA | 61.565 | 55.000 | 15.93 | 1.15 | 38.08 | 2.92 |
436 | 439 | 0.670239 | ACGCGATCAACATGTGCTCA | 60.670 | 50.000 | 15.93 | 0.00 | 0.00 | 4.26 |
456 | 459 | 0.468226 | TTGTGGCGTTGAGGAAGAGT | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
496 | 499 | 2.276201 | TGTATGTACGCATGCAAGGAC | 58.724 | 47.619 | 19.57 | 9.81 | 43.07 | 3.85 |
590 | 593 | 4.249661 | GGTTTTTGTCCTTGTTGAGCAAA | 58.750 | 39.130 | 0.00 | 0.00 | 36.53 | 3.68 |
783 | 794 | 3.366883 | GCAAGATGACTATCCTAGAGGCG | 60.367 | 52.174 | 0.00 | 0.00 | 33.64 | 5.52 |
879 | 920 | 1.002069 | TGGATGGTTCCTTCCAGCAT | 58.998 | 50.000 | 18.53 | 0.00 | 44.58 | 3.79 |
945 | 986 | 2.863740 | TGGTACAATTATCTTCGCAGCG | 59.136 | 45.455 | 9.06 | 9.06 | 31.92 | 5.18 |
1146 | 1187 | 5.189180 | GTGCTGGAGATTAAGGATCTGTTT | 58.811 | 41.667 | 0.00 | 0.00 | 45.17 | 2.83 |
1379 | 1421 | 3.678072 | AGATACACAAACACGGATGAACG | 59.322 | 43.478 | 0.00 | 0.00 | 40.31 | 3.95 |
1390 | 1432 | 1.726791 | CGGATGAACGAGGACAAACAG | 59.273 | 52.381 | 0.00 | 0.00 | 35.47 | 3.16 |
1394 | 1436 | 0.507358 | GAACGAGGACAAACAGCGAC | 59.493 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1413 | 1455 | 1.207089 | ACCGAATCTTGCGAGATCCAA | 59.793 | 47.619 | 17.02 | 0.00 | 41.78 | 3.53 |
1422 | 1464 | 0.103208 | GCGAGATCCAACGGAGACAT | 59.897 | 55.000 | 6.67 | 0.00 | 34.05 | 3.06 |
1424 | 1466 | 2.859032 | GCGAGATCCAACGGAGACATAC | 60.859 | 54.545 | 6.67 | 0.00 | 34.05 | 2.39 |
1441 | 1483 | 3.197766 | ACATACCTCTTCATGCCTTTCGA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
1446 | 1488 | 1.000394 | TCTTCATGCCTTTCGACGACA | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
1452 | 1494 | 1.068748 | TGCCTTTCGACGACACTAGTC | 60.069 | 52.381 | 0.00 | 0.00 | 41.46 | 2.59 |
1482 | 1524 | 3.917760 | CGGGGGCTAGGCGAAGAG | 61.918 | 72.222 | 10.58 | 0.00 | 0.00 | 2.85 |
1485 | 1527 | 1.411651 | GGGGGCTAGGCGAAGAGAAT | 61.412 | 60.000 | 10.58 | 0.00 | 0.00 | 2.40 |
1490 | 1532 | 3.560481 | GGGCTAGGCGAAGAGAATTTTAC | 59.440 | 47.826 | 10.58 | 0.00 | 0.00 | 2.01 |
1493 | 1535 | 5.006844 | GGCTAGGCGAAGAGAATTTTACTTC | 59.993 | 44.000 | 0.00 | 0.00 | 37.32 | 3.01 |
1506 | 1548 | 9.995957 | GAGAATTTTACTTCATCTTTAGGAAGC | 57.004 | 33.333 | 0.00 | 0.00 | 45.31 | 3.86 |
1514 | 1556 | 3.773119 | TCATCTTTAGGAAGCCGTTACCT | 59.227 | 43.478 | 0.00 | 0.00 | 37.76 | 3.08 |
1525 | 1567 | 1.202545 | GCCGTTACCTCCTCATCTTCC | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
1529 | 1571 | 4.038162 | CCGTTACCTCCTCATCTTCCTAAG | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 2.18 |
1552 | 1594 | 5.046950 | AGCAGGACACAAACCTTAAACAAAA | 60.047 | 36.000 | 0.00 | 0.00 | 35.35 | 2.44 |
1556 | 1598 | 8.726068 | CAGGACACAAACCTTAAACAAAATTTT | 58.274 | 29.630 | 0.00 | 0.00 | 35.35 | 1.82 |
1590 | 1632 | 0.619832 | TGAAGCAGGAGCCCTCTCAT | 60.620 | 55.000 | 0.00 | 0.00 | 43.56 | 2.90 |
1655 | 1697 | 2.902486 | ACATGAGGCATGGTAGATCGAT | 59.098 | 45.455 | 11.61 | 0.00 | 45.16 | 3.59 |
1684 | 1726 | 4.086457 | ACCAATGATAGGTGTGAAAACCC | 58.914 | 43.478 | 0.00 | 0.00 | 41.54 | 4.11 |
1686 | 1728 | 2.483014 | TGATAGGTGTGAAAACCCCG | 57.517 | 50.000 | 0.00 | 0.00 | 41.54 | 5.73 |
1699 | 1741 | 2.358247 | CCCCGGTTGTTGGAGTCG | 60.358 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1711 | 1753 | 2.179517 | GAGTCGCTCGTGGTGAGG | 59.820 | 66.667 | 0.00 | 0.00 | 45.38 | 3.86 |
1763 | 1805 | 2.106511 | AGGTTAGGTGTGTGCATGTTCT | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1775 | 1817 | 2.815503 | TGCATGTTCTTGAGACCACATG | 59.184 | 45.455 | 16.21 | 16.21 | 42.13 | 3.21 |
1801 | 1843 | 4.753233 | CTGACTATTGTGAGACTTGGGAG | 58.247 | 47.826 | 0.00 | 0.00 | 28.51 | 4.30 |
1872 | 1914 | 2.254152 | TGATCCAAGGGCTGTAGACT | 57.746 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1913 | 1955 | 9.582431 | CATTCTAAGACGTAAGATTACTTCCAA | 57.418 | 33.333 | 5.81 | 0.00 | 43.62 | 3.53 |
1999 | 2043 | 3.911868 | TGCACAAATTAGCATCACCAAC | 58.088 | 40.909 | 0.00 | 0.00 | 35.51 | 3.77 |
2002 | 2046 | 4.622740 | GCACAAATTAGCATCACCAACTTC | 59.377 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2040 | 2084 | 8.356000 | ACCCAAGAATTTTCCGTGAATAAATA | 57.644 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2060 | 2104 | 7.578458 | AAATACCCATCTTTATATACCCCGT | 57.422 | 36.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2112 | 2156 | 9.520204 | AGCTCATCAAAATAAATACAAATTCCG | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 4.30 |
2157 | 2201 | 8.889717 | TCAACTTGTTTCTTAACTCCTTAGTTG | 58.110 | 33.333 | 0.00 | 0.00 | 45.63 | 3.16 |
2165 | 2209 | 7.171630 | TCTTAACTCCTTAGTTGTCCAGATC | 57.828 | 40.000 | 1.11 | 0.00 | 45.63 | 2.75 |
2169 | 2213 | 5.833340 | ACTCCTTAGTTGTCCAGATCTACT | 58.167 | 41.667 | 0.00 | 0.00 | 29.00 | 2.57 |
2170 | 2214 | 5.654650 | ACTCCTTAGTTGTCCAGATCTACTG | 59.345 | 44.000 | 5.51 | 0.00 | 38.38 | 2.74 |
2171 | 2215 | 5.580998 | TCCTTAGTTGTCCAGATCTACTGT | 58.419 | 41.667 | 5.51 | 0.00 | 44.40 | 3.55 |
2172 | 2216 | 6.728411 | TCCTTAGTTGTCCAGATCTACTGTA | 58.272 | 40.000 | 5.51 | 0.00 | 44.40 | 2.74 |
2173 | 2217 | 7.179966 | TCCTTAGTTGTCCAGATCTACTGTAA | 58.820 | 38.462 | 5.51 | 0.00 | 44.40 | 2.41 |
2174 | 2218 | 7.122353 | TCCTTAGTTGTCCAGATCTACTGTAAC | 59.878 | 40.741 | 5.51 | 3.89 | 44.40 | 2.50 |
2175 | 2219 | 7.093902 | CCTTAGTTGTCCAGATCTACTGTAACA | 60.094 | 40.741 | 5.51 | 0.00 | 44.40 | 2.41 |
2176 | 2220 | 6.859112 | AGTTGTCCAGATCTACTGTAACAT | 57.141 | 37.500 | 0.00 | 0.00 | 44.40 | 2.71 |
2177 | 2221 | 6.868622 | AGTTGTCCAGATCTACTGTAACATC | 58.131 | 40.000 | 0.00 | 0.00 | 44.40 | 3.06 |
2178 | 2222 | 5.854010 | TGTCCAGATCTACTGTAACATCC | 57.146 | 43.478 | 0.00 | 0.00 | 44.40 | 3.51 |
2179 | 2223 | 4.649674 | TGTCCAGATCTACTGTAACATCCC | 59.350 | 45.833 | 0.00 | 0.00 | 44.40 | 3.85 |
2180 | 2224 | 4.649674 | GTCCAGATCTACTGTAACATCCCA | 59.350 | 45.833 | 0.00 | 0.00 | 44.40 | 4.37 |
2181 | 2225 | 5.305644 | GTCCAGATCTACTGTAACATCCCAT | 59.694 | 44.000 | 0.00 | 0.00 | 44.40 | 4.00 |
2182 | 2226 | 5.905331 | TCCAGATCTACTGTAACATCCCATT | 59.095 | 40.000 | 0.00 | 0.00 | 44.40 | 3.16 |
2183 | 2227 | 6.386927 | TCCAGATCTACTGTAACATCCCATTT | 59.613 | 38.462 | 0.00 | 0.00 | 44.40 | 2.32 |
2184 | 2228 | 7.056635 | CCAGATCTACTGTAACATCCCATTTT | 58.943 | 38.462 | 0.00 | 0.00 | 44.40 | 1.82 |
2185 | 2229 | 7.557719 | CCAGATCTACTGTAACATCCCATTTTT | 59.442 | 37.037 | 0.00 | 0.00 | 44.40 | 1.94 |
2212 | 2256 | 9.913310 | TTCAATTTGGATGTTATACATAGGTCA | 57.087 | 29.630 | 0.00 | 0.00 | 39.27 | 4.02 |
2220 | 2264 | 9.265901 | GGATGTTATACATAGGTCATCATATGC | 57.734 | 37.037 | 8.58 | 0.00 | 39.27 | 3.14 |
2221 | 2265 | 9.822185 | GATGTTATACATAGGTCATCATATGCA | 57.178 | 33.333 | 0.00 | 0.00 | 39.27 | 3.96 |
2254 | 2298 | 8.761575 | TTTATTCTTGCATTTGTTTGAGATCC | 57.238 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
2255 | 2299 | 6.600882 | ATTCTTGCATTTGTTTGAGATCCT | 57.399 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2256 | 2300 | 7.707624 | ATTCTTGCATTTGTTTGAGATCCTA | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2257 | 2301 | 6.748333 | TCTTGCATTTGTTTGAGATCCTAG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2258 | 2302 | 6.475504 | TCTTGCATTTGTTTGAGATCCTAGA | 58.524 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2259 | 2303 | 6.942005 | TCTTGCATTTGTTTGAGATCCTAGAA | 59.058 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2260 | 2304 | 7.448161 | TCTTGCATTTGTTTGAGATCCTAGAAA | 59.552 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2261 | 2305 | 7.707624 | TGCATTTGTTTGAGATCCTAGAAAT | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2262 | 2306 | 7.765307 | TGCATTTGTTTGAGATCCTAGAAATC | 58.235 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2263 | 2307 | 7.613022 | TGCATTTGTTTGAGATCCTAGAAATCT | 59.387 | 33.333 | 7.17 | 7.17 | 36.19 | 2.40 |
2264 | 2308 | 8.465201 | GCATTTGTTTGAGATCCTAGAAATCTT | 58.535 | 33.333 | 8.47 | 0.00 | 33.64 | 2.40 |
2268 | 2312 | 8.723942 | TGTTTGAGATCCTAGAAATCTTAAGC | 57.276 | 34.615 | 13.91 | 13.91 | 33.64 | 3.09 |
2269 | 2313 | 8.321353 | TGTTTGAGATCCTAGAAATCTTAAGCA | 58.679 | 33.333 | 16.92 | 16.92 | 37.50 | 3.91 |
2270 | 2314 | 9.167311 | GTTTGAGATCCTAGAAATCTTAAGCAA | 57.833 | 33.333 | 14.98 | 9.86 | 33.25 | 3.91 |
2271 | 2315 | 8.723942 | TTGAGATCCTAGAAATCTTAAGCAAC | 57.276 | 34.615 | 0.00 | 0.00 | 33.64 | 4.17 |
2272 | 2316 | 8.083828 | TGAGATCCTAGAAATCTTAAGCAACT | 57.916 | 34.615 | 0.00 | 0.00 | 33.64 | 3.16 |
2273 | 2317 | 8.200792 | TGAGATCCTAGAAATCTTAAGCAACTC | 58.799 | 37.037 | 0.00 | 0.00 | 33.64 | 3.01 |
2274 | 2318 | 8.083828 | AGATCCTAGAAATCTTAAGCAACTCA | 57.916 | 34.615 | 0.00 | 0.00 | 29.01 | 3.41 |
2275 | 2319 | 8.543774 | AGATCCTAGAAATCTTAAGCAACTCAA | 58.456 | 33.333 | 0.00 | 0.00 | 29.01 | 3.02 |
2276 | 2320 | 8.729805 | ATCCTAGAAATCTTAAGCAACTCAAG | 57.270 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
2277 | 2321 | 7.106239 | TCCTAGAAATCTTAAGCAACTCAAGG | 58.894 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
2278 | 2322 | 7.038302 | TCCTAGAAATCTTAAGCAACTCAAGGA | 60.038 | 37.037 | 0.00 | 2.34 | 0.00 | 3.36 |
2279 | 2323 | 6.809630 | AGAAATCTTAAGCAACTCAAGGAC | 57.190 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
2280 | 2324 | 5.707764 | AGAAATCTTAAGCAACTCAAGGACC | 59.292 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2281 | 2325 | 3.418684 | TCTTAAGCAACTCAAGGACCC | 57.581 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
2282 | 2326 | 2.708861 | TCTTAAGCAACTCAAGGACCCA | 59.291 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
2283 | 2327 | 3.137544 | TCTTAAGCAACTCAAGGACCCAA | 59.862 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
2284 | 2328 | 1.986882 | AAGCAACTCAAGGACCCAAG | 58.013 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2285 | 2329 | 0.111253 | AGCAACTCAAGGACCCAAGG | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2286 | 2330 | 0.110486 | GCAACTCAAGGACCCAAGGA | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2287 | 2331 | 1.884067 | GCAACTCAAGGACCCAAGGAG | 60.884 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
2288 | 2332 | 1.699634 | CAACTCAAGGACCCAAGGAGA | 59.300 | 52.381 | 6.37 | 0.00 | 0.00 | 3.71 |
2289 | 2333 | 1.650528 | ACTCAAGGACCCAAGGAGAG | 58.349 | 55.000 | 6.37 | 0.00 | 0.00 | 3.20 |
2290 | 2334 | 1.150135 | ACTCAAGGACCCAAGGAGAGA | 59.850 | 52.381 | 6.37 | 0.00 | 0.00 | 3.10 |
2291 | 2335 | 1.830477 | CTCAAGGACCCAAGGAGAGAG | 59.170 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
2292 | 2336 | 1.150135 | TCAAGGACCCAAGGAGAGAGT | 59.850 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
2293 | 2337 | 1.981495 | CAAGGACCCAAGGAGAGAGTT | 59.019 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2294 | 2338 | 3.173965 | CAAGGACCCAAGGAGAGAGTTA | 58.826 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2295 | 2339 | 3.108847 | AGGACCCAAGGAGAGAGTTAG | 57.891 | 52.381 | 0.00 | 0.00 | 0.00 | 2.34 |
2296 | 2340 | 2.655407 | AGGACCCAAGGAGAGAGTTAGA | 59.345 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2297 | 2341 | 3.028130 | GGACCCAAGGAGAGAGTTAGAG | 58.972 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
2298 | 2342 | 3.028130 | GACCCAAGGAGAGAGTTAGAGG | 58.972 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
2299 | 2343 | 2.384029 | ACCCAAGGAGAGAGTTAGAGGT | 59.616 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2300 | 2344 | 3.181405 | ACCCAAGGAGAGAGTTAGAGGTT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.50 |
2301 | 2345 | 3.841255 | CCCAAGGAGAGAGTTAGAGGTTT | 59.159 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
2302 | 2346 | 4.081365 | CCCAAGGAGAGAGTTAGAGGTTTC | 60.081 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2303 | 2347 | 4.528596 | CCAAGGAGAGAGTTAGAGGTTTCA | 59.471 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
2304 | 2348 | 5.474825 | CAAGGAGAGAGTTAGAGGTTTCAC | 58.525 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2305 | 2349 | 4.742012 | AGGAGAGAGTTAGAGGTTTCACA | 58.258 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
2306 | 2350 | 5.148502 | AGGAGAGAGTTAGAGGTTTCACAA | 58.851 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2307 | 2351 | 5.602978 | AGGAGAGAGTTAGAGGTTTCACAAA | 59.397 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2308 | 2352 | 6.099845 | AGGAGAGAGTTAGAGGTTTCACAAAA | 59.900 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
2309 | 2353 | 6.766467 | GGAGAGAGTTAGAGGTTTCACAAAAA | 59.234 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
2310 | 2354 | 7.445707 | GGAGAGAGTTAGAGGTTTCACAAAAAT | 59.554 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2311 | 2355 | 8.384607 | AGAGAGTTAGAGGTTTCACAAAAATC | 57.615 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2312 | 2356 | 7.993183 | AGAGAGTTAGAGGTTTCACAAAAATCA | 59.007 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2313 | 2357 | 8.697507 | AGAGTTAGAGGTTTCACAAAAATCAT | 57.302 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
2314 | 2358 | 9.793259 | AGAGTTAGAGGTTTCACAAAAATCATA | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
217 | 220 | 2.169832 | TGCAAGTCTGTAAGCACTCC | 57.830 | 50.000 | 0.00 | 0.00 | 31.05 | 3.85 |
240 | 243 | 4.065088 | GTGAAGACAGAATTGTGTGCCTA | 58.935 | 43.478 | 13.71 | 0.00 | 37.76 | 3.93 |
401 | 404 | 1.885388 | CGTTGGCAAGTGTCACCGA | 60.885 | 57.895 | 0.00 | 0.00 | 37.78 | 4.69 |
403 | 406 | 2.331451 | GCGTTGGCAAGTGTCACC | 59.669 | 61.111 | 0.00 | 0.00 | 39.62 | 4.02 |
405 | 408 | 1.565156 | GATCGCGTTGGCAAGTGTCA | 61.565 | 55.000 | 5.77 | 0.00 | 39.92 | 3.58 |
425 | 428 | 0.241749 | CGCCACAATGAGCACATGTT | 59.758 | 50.000 | 0.00 | 0.00 | 36.79 | 2.71 |
436 | 439 | 1.072331 | ACTCTTCCTCAACGCCACAAT | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
456 | 459 | 2.850806 | ATCAGCGCATGGTACGTGCA | 62.851 | 55.000 | 11.47 | 3.30 | 42.62 | 4.57 |
496 | 499 | 0.036952 | ACGCATGTTCACCCAGAGAG | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
590 | 593 | 1.561076 | TCCCTTACATCAGCAGTGCAT | 59.439 | 47.619 | 19.20 | 0.00 | 0.00 | 3.96 |
879 | 920 | 0.108186 | CTGCCGCAGTACCATCTTCA | 60.108 | 55.000 | 12.54 | 0.00 | 0.00 | 3.02 |
909 | 950 | 2.969950 | TGTACCATCCGGATTCCTTAGG | 59.030 | 50.000 | 16.19 | 14.46 | 35.59 | 2.69 |
945 | 986 | 5.718649 | TGCAGTGAAAGATAAAGCGATAC | 57.281 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
960 | 1001 | 1.661509 | CAGCGAGTCGTTGCAGTGA | 60.662 | 57.895 | 16.53 | 0.00 | 35.18 | 3.41 |
1320 | 1362 | 1.428718 | TTTGCGGGGGTAAAGGGAGT | 61.429 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1379 | 1421 | 0.599204 | TTCGGTCGCTGTTTGTCCTC | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1413 | 1455 | 2.101582 | GCATGAAGAGGTATGTCTCCGT | 59.898 | 50.000 | 0.00 | 0.00 | 34.46 | 4.69 |
1422 | 1464 | 2.416836 | CGTCGAAAGGCATGAAGAGGTA | 60.417 | 50.000 | 0.00 | 0.00 | 33.27 | 3.08 |
1424 | 1466 | 1.002366 | CGTCGAAAGGCATGAAGAGG | 58.998 | 55.000 | 0.00 | 0.00 | 33.27 | 3.69 |
1446 | 1488 | 3.760035 | CCCAGCGGTGCGACTAGT | 61.760 | 66.667 | 9.63 | 0.00 | 0.00 | 2.57 |
1466 | 1508 | 1.411651 | ATTCTCTTCGCCTAGCCCCC | 61.412 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1482 | 1524 | 7.910683 | CGGCTTCCTAAAGATGAAGTAAAATTC | 59.089 | 37.037 | 0.00 | 0.00 | 40.07 | 2.17 |
1485 | 1527 | 6.235664 | ACGGCTTCCTAAAGATGAAGTAAAA | 58.764 | 36.000 | 0.00 | 0.00 | 40.07 | 1.52 |
1490 | 1532 | 4.571176 | GGTAACGGCTTCCTAAAGATGAAG | 59.429 | 45.833 | 0.00 | 0.00 | 40.72 | 3.02 |
1493 | 1535 | 4.120589 | GAGGTAACGGCTTCCTAAAGATG | 58.879 | 47.826 | 0.00 | 0.00 | 46.39 | 2.90 |
1506 | 1548 | 2.389715 | AGGAAGATGAGGAGGTAACGG | 58.610 | 52.381 | 0.00 | 0.00 | 46.39 | 4.44 |
1514 | 1556 | 3.034635 | GTCCTGCTTAGGAAGATGAGGA | 58.965 | 50.000 | 0.00 | 0.00 | 40.06 | 3.71 |
1525 | 1567 | 5.298276 | TGTTTAAGGTTTGTGTCCTGCTTAG | 59.702 | 40.000 | 0.00 | 0.00 | 35.27 | 2.18 |
1529 | 1571 | 4.379339 | TTGTTTAAGGTTTGTGTCCTGC | 57.621 | 40.909 | 0.00 | 0.00 | 35.27 | 4.85 |
1556 | 1598 | 7.362056 | GCTCCTGCTTCATTCTTATGTGTTTTA | 60.362 | 37.037 | 0.00 | 0.00 | 36.03 | 1.52 |
1573 | 1615 | 1.684386 | CGATGAGAGGGCTCCTGCTT | 61.684 | 60.000 | 0.00 | 0.00 | 40.55 | 3.91 |
1578 | 1620 | 2.657102 | CTTGGCGATGAGAGGGCTCC | 62.657 | 65.000 | 0.00 | 0.00 | 40.55 | 4.70 |
1590 | 1632 | 3.467226 | GATCCCGTCCCTTGGCGA | 61.467 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1613 | 1655 | 4.181010 | CTCAGGACCATGGGGGCG | 62.181 | 72.222 | 18.09 | 1.66 | 46.61 | 6.13 |
1617 | 1659 | 0.982852 | TGTAGCCTCAGGACCATGGG | 60.983 | 60.000 | 18.09 | 0.00 | 0.00 | 4.00 |
1618 | 1660 | 1.135094 | ATGTAGCCTCAGGACCATGG | 58.865 | 55.000 | 11.19 | 11.19 | 0.00 | 3.66 |
1684 | 1726 | 2.027625 | GAGCGACTCCAACAACCGG | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
1686 | 1728 | 1.300697 | ACGAGCGACTCCAACAACC | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
1699 | 1741 | 0.389166 | CAACTCTCCTCACCACGAGC | 60.389 | 60.000 | 0.00 | 0.00 | 40.78 | 5.03 |
1775 | 1817 | 3.601443 | AGTCTCACAATAGTCAGCACC | 57.399 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
1872 | 1914 | 7.095313 | CGTCTTAGAATGTAAGAGGTCGCTATA | 60.095 | 40.741 | 10.51 | 0.00 | 35.74 | 1.31 |
1913 | 1955 | 8.845413 | TGCCTACAAAATAATCTTGCATTTTT | 57.155 | 26.923 | 0.00 | 0.00 | 33.23 | 1.94 |
2040 | 2084 | 4.495565 | TCACGGGGTATATAAAGATGGGT | 58.504 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
2143 | 2187 | 7.894364 | AGTAGATCTGGACAACTAAGGAGTTAA | 59.106 | 37.037 | 5.18 | 0.00 | 44.39 | 2.01 |
2186 | 2230 | 9.913310 | TGACCTATGTATAACATCCAAATTGAA | 57.087 | 29.630 | 0.00 | 0.00 | 39.88 | 2.69 |
2194 | 2238 | 9.265901 | GCATATGATGACCTATGTATAACATCC | 57.734 | 37.037 | 6.97 | 0.00 | 39.88 | 3.51 |
2195 | 2239 | 9.822185 | TGCATATGATGACCTATGTATAACATC | 57.178 | 33.333 | 6.97 | 0.00 | 39.88 | 3.06 |
2228 | 2272 | 9.374838 | GGATCTCAAACAAATGCAAGAATAAAT | 57.625 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2229 | 2273 | 8.587608 | AGGATCTCAAACAAATGCAAGAATAAA | 58.412 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2230 | 2274 | 8.125978 | AGGATCTCAAACAAATGCAAGAATAA | 57.874 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2231 | 2275 | 7.707624 | AGGATCTCAAACAAATGCAAGAATA | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2232 | 2276 | 6.600882 | AGGATCTCAAACAAATGCAAGAAT | 57.399 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2233 | 2277 | 6.942005 | TCTAGGATCTCAAACAAATGCAAGAA | 59.058 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2234 | 2278 | 6.475504 | TCTAGGATCTCAAACAAATGCAAGA | 58.524 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2235 | 2279 | 6.748333 | TCTAGGATCTCAAACAAATGCAAG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 4.01 |
2236 | 2280 | 7.523293 | TTTCTAGGATCTCAAACAAATGCAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2237 | 2281 | 7.613022 | AGATTTCTAGGATCTCAAACAAATGCA | 59.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
2238 | 2282 | 7.994194 | AGATTTCTAGGATCTCAAACAAATGC | 58.006 | 34.615 | 4.33 | 0.00 | 0.00 | 3.56 |
2242 | 2286 | 9.167311 | GCTTAAGATTTCTAGGATCTCAAACAA | 57.833 | 33.333 | 6.67 | 1.75 | 32.86 | 2.83 |
2243 | 2287 | 8.321353 | TGCTTAAGATTTCTAGGATCTCAAACA | 58.679 | 33.333 | 6.67 | 2.51 | 32.86 | 2.83 |
2244 | 2288 | 8.723942 | TGCTTAAGATTTCTAGGATCTCAAAC | 57.276 | 34.615 | 6.67 | 0.45 | 32.86 | 2.93 |
2245 | 2289 | 9.167311 | GTTGCTTAAGATTTCTAGGATCTCAAA | 57.833 | 33.333 | 6.67 | 7.05 | 32.86 | 2.69 |
2246 | 2290 | 8.543774 | AGTTGCTTAAGATTTCTAGGATCTCAA | 58.456 | 33.333 | 6.67 | 7.13 | 32.86 | 3.02 |
2247 | 2291 | 8.083828 | AGTTGCTTAAGATTTCTAGGATCTCA | 57.916 | 34.615 | 6.67 | 2.67 | 32.86 | 3.27 |
2248 | 2292 | 8.200792 | TGAGTTGCTTAAGATTTCTAGGATCTC | 58.799 | 37.037 | 6.67 | 0.00 | 32.86 | 2.75 |
2249 | 2293 | 8.083828 | TGAGTTGCTTAAGATTTCTAGGATCT | 57.916 | 34.615 | 6.67 | 4.33 | 35.43 | 2.75 |
2250 | 2294 | 8.723942 | TTGAGTTGCTTAAGATTTCTAGGATC | 57.276 | 34.615 | 6.67 | 0.00 | 0.00 | 3.36 |
2251 | 2295 | 7.772757 | CCTTGAGTTGCTTAAGATTTCTAGGAT | 59.227 | 37.037 | 6.67 | 0.00 | 30.08 | 3.24 |
2252 | 2296 | 7.038302 | TCCTTGAGTTGCTTAAGATTTCTAGGA | 60.038 | 37.037 | 6.67 | 14.03 | 34.39 | 2.94 |
2253 | 2297 | 7.065204 | GTCCTTGAGTTGCTTAAGATTTCTAGG | 59.935 | 40.741 | 6.67 | 12.22 | 30.08 | 3.02 |
2254 | 2298 | 7.065204 | GGTCCTTGAGTTGCTTAAGATTTCTAG | 59.935 | 40.741 | 6.67 | 4.36 | 30.08 | 2.43 |
2255 | 2299 | 6.879458 | GGTCCTTGAGTTGCTTAAGATTTCTA | 59.121 | 38.462 | 6.67 | 0.00 | 30.08 | 2.10 |
2256 | 2300 | 5.707764 | GGTCCTTGAGTTGCTTAAGATTTCT | 59.292 | 40.000 | 6.67 | 0.00 | 30.08 | 2.52 |
2257 | 2301 | 5.106118 | GGGTCCTTGAGTTGCTTAAGATTTC | 60.106 | 44.000 | 6.67 | 0.00 | 30.08 | 2.17 |
2258 | 2302 | 4.767409 | GGGTCCTTGAGTTGCTTAAGATTT | 59.233 | 41.667 | 6.67 | 0.00 | 30.08 | 2.17 |
2259 | 2303 | 4.202567 | TGGGTCCTTGAGTTGCTTAAGATT | 60.203 | 41.667 | 6.67 | 0.00 | 30.08 | 2.40 |
2260 | 2304 | 3.330701 | TGGGTCCTTGAGTTGCTTAAGAT | 59.669 | 43.478 | 6.67 | 0.00 | 30.08 | 2.40 |
2261 | 2305 | 2.708861 | TGGGTCCTTGAGTTGCTTAAGA | 59.291 | 45.455 | 6.67 | 0.00 | 30.08 | 2.10 |
2262 | 2306 | 3.140325 | TGGGTCCTTGAGTTGCTTAAG | 57.860 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2263 | 2307 | 3.486383 | CTTGGGTCCTTGAGTTGCTTAA | 58.514 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
2264 | 2308 | 2.224769 | CCTTGGGTCCTTGAGTTGCTTA | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
2265 | 2309 | 1.479389 | CCTTGGGTCCTTGAGTTGCTT | 60.479 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
2266 | 2310 | 0.111253 | CCTTGGGTCCTTGAGTTGCT | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2267 | 2311 | 0.110486 | TCCTTGGGTCCTTGAGTTGC | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2268 | 2312 | 1.699634 | TCTCCTTGGGTCCTTGAGTTG | 59.300 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2269 | 2313 | 1.981495 | CTCTCCTTGGGTCCTTGAGTT | 59.019 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2270 | 2314 | 1.150135 | TCTCTCCTTGGGTCCTTGAGT | 59.850 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2271 | 2315 | 1.830477 | CTCTCTCCTTGGGTCCTTGAG | 59.170 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
2272 | 2316 | 1.150135 | ACTCTCTCCTTGGGTCCTTGA | 59.850 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2273 | 2317 | 1.650528 | ACTCTCTCCTTGGGTCCTTG | 58.349 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2274 | 2318 | 2.424684 | AACTCTCTCCTTGGGTCCTT | 57.575 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2275 | 2319 | 2.655407 | TCTAACTCTCTCCTTGGGTCCT | 59.345 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2276 | 2320 | 3.028130 | CTCTAACTCTCTCCTTGGGTCC | 58.972 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
2277 | 2321 | 3.028130 | CCTCTAACTCTCTCCTTGGGTC | 58.972 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
2278 | 2322 | 2.384029 | ACCTCTAACTCTCTCCTTGGGT | 59.616 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2279 | 2323 | 3.108847 | ACCTCTAACTCTCTCCTTGGG | 57.891 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
2280 | 2324 | 4.528596 | TGAAACCTCTAACTCTCTCCTTGG | 59.471 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
2281 | 2325 | 5.011125 | TGTGAAACCTCTAACTCTCTCCTTG | 59.989 | 44.000 | 0.00 | 0.00 | 34.36 | 3.61 |
2282 | 2326 | 5.148502 | TGTGAAACCTCTAACTCTCTCCTT | 58.851 | 41.667 | 0.00 | 0.00 | 34.36 | 3.36 |
2283 | 2327 | 4.742012 | TGTGAAACCTCTAACTCTCTCCT | 58.258 | 43.478 | 0.00 | 0.00 | 34.36 | 3.69 |
2284 | 2328 | 5.470047 | TTGTGAAACCTCTAACTCTCTCC | 57.530 | 43.478 | 0.00 | 0.00 | 34.36 | 3.71 |
2285 | 2329 | 7.787725 | TTTTTGTGAAACCTCTAACTCTCTC | 57.212 | 36.000 | 0.00 | 0.00 | 34.36 | 3.20 |
2286 | 2330 | 7.993183 | TGATTTTTGTGAAACCTCTAACTCTCT | 59.007 | 33.333 | 0.00 | 0.00 | 34.36 | 3.10 |
2287 | 2331 | 8.154649 | TGATTTTTGTGAAACCTCTAACTCTC | 57.845 | 34.615 | 0.00 | 0.00 | 34.36 | 3.20 |
2288 | 2332 | 8.697507 | ATGATTTTTGTGAAACCTCTAACTCT | 57.302 | 30.769 | 0.00 | 0.00 | 34.36 | 3.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.