Multiple sequence alignment - TraesCS1B01G158500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G158500 chr1B 100.000 5467 0 0 1 5467 269035844 269041310 0.000000e+00 10096
1 TraesCS1B01G158500 chr1B 95.000 100 3 2 3157 3254 70318475 70318574 7.330000e-34 156
2 TraesCS1B01G158500 chr1D 94.289 2031 79 21 3250 5271 196486897 196484895 0.000000e+00 3073
3 TraesCS1B01G158500 chr1D 93.967 1674 51 25 806 2459 196489240 196487597 0.000000e+00 2486
4 TraesCS1B01G158500 chr1D 94.118 697 30 4 2465 3160 196487557 196486871 0.000000e+00 1050
5 TraesCS1B01G158500 chr1D 91.092 595 21 14 123 704 196489884 196489309 0.000000e+00 776
6 TraesCS1B01G158500 chr1D 97.312 186 5 0 5282 5467 196479447 196479262 3.180000e-82 316
7 TraesCS1B01G158500 chr1D 92.793 111 4 4 3157 3267 44623310 44623416 2.040000e-34 158
8 TraesCS1B01G158500 chr1A 95.506 1068 38 7 3250 4314 245529275 245528215 0.000000e+00 1698
9 TraesCS1B01G158500 chr1A 93.892 1097 49 11 1948 3039 245535593 245534510 0.000000e+00 1639
10 TraesCS1B01G158500 chr1A 93.228 1078 31 21 806 1869 245536836 245535787 0.000000e+00 1548
11 TraesCS1B01G158500 chr1A 92.738 840 37 7 4628 5467 245527622 245526807 0.000000e+00 1192
12 TraesCS1B01G158500 chr1A 94.880 332 7 1 4298 4629 245528057 245527736 1.360000e-140 510
13 TraesCS1B01G158500 chr1A 91.519 283 10 9 107 378 245537455 245537176 1.440000e-100 377
14 TraesCS1B01G158500 chr1A 92.553 188 4 1 423 600 245537179 245536992 1.510000e-65 261
15 TraesCS1B01G158500 chr1A 95.276 127 5 1 3035 3160 245529375 245529249 3.340000e-47 200
16 TraesCS1B01G158500 chr1A 97.000 100 3 0 3157 3256 82525971 82526070 9.420000e-38 169
17 TraesCS1B01G158500 chr1A 96.000 100 3 1 3157 3256 363216176 363216274 1.580000e-35 161
18 TraesCS1B01G158500 chr1A 94.340 106 5 1 3157 3262 550884939 550884835 1.580000e-35 161
19 TraesCS1B01G158500 chr7D 95.283 106 4 1 3158 3263 14550793 14550689 3.390000e-37 167
20 TraesCS1B01G158500 chr5D 97.000 100 2 1 3157 3256 69904714 69904616 3.390000e-37 167
21 TraesCS1B01G158500 chr5D 97.000 100 2 1 3157 3256 225256287 225256189 3.390000e-37 167
22 TraesCS1B01G158500 chr4A 96.078 102 3 1 3157 3258 657204774 657204674 1.220000e-36 165
23 TraesCS1B01G158500 chr4A 85.833 120 17 0 1038 1157 683606213 683606332 1.600000e-25 128
24 TraesCS1B01G158500 chr4A 94.805 77 4 0 2711 2787 683607837 683607913 2.670000e-23 121
25 TraesCS1B01G158500 chr4D 86.400 125 16 1 1038 1161 476865628 476865752 9.550000e-28 135
26 TraesCS1B01G158500 chr4D 93.827 81 4 1 2707 2787 476867236 476867315 2.670000e-23 121
27 TraesCS1B01G158500 chr4B 85.833 120 17 0 1038 1157 600917282 600917401 1.600000e-25 128
28 TraesCS1B01G158500 chr4B 93.827 81 4 1 2707 2787 600918938 600919017 2.670000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G158500 chr1B 269035844 269041310 5466 False 10096.00 10096 100.0000 1 5467 1 chr1B.!!$F2 5466
1 TraesCS1B01G158500 chr1D 196484895 196489884 4989 True 1846.25 3073 93.3665 123 5271 4 chr1D.!!$R2 5148
2 TraesCS1B01G158500 chr1A 245534510 245537455 2945 True 956.25 1639 92.7980 107 3039 4 chr1A.!!$R3 2932
3 TraesCS1B01G158500 chr1A 245526807 245529375 2568 True 900.00 1698 94.6000 3035 5467 4 chr1A.!!$R2 2432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 786 0.110486 GCCTTGTCCCTGAACTGGAA 59.890 55.0 0.0 0.0 32.59 3.53 F
759 789 0.534203 TTGTCCCTGAACTGGAACGC 60.534 55.0 0.0 0.0 32.59 4.84 F
2427 2613 0.642156 TGCCCTCCCATCCTTCTCTA 59.358 55.0 0.0 0.0 0.00 2.43 F
3173 3394 0.034059 CTATGTAGGGAAGGGCTGCG 59.966 60.0 0.0 0.0 0.00 5.18 F
3186 3407 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.0 0.0 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1669 0.318955 AGTGCGCAATCAGGTTTTGC 60.319 50.000 14.00 0.00 44.68 3.68 R
2703 2923 0.461693 GGCCAGCTGCAAAACAACAA 60.462 50.000 8.66 0.00 43.89 2.83 R
4181 4408 0.035439 ATCTAAGGTTGTGGGGCACG 60.035 55.000 0.00 0.00 37.14 5.34 R
4293 4523 0.682292 GCTAGGGGCTTGCCTACTAG 59.318 60.000 25.05 25.05 38.06 2.57 R
4915 5434 1.077169 CTTTACTTCCCCTGGCCCTTT 59.923 52.381 0.00 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.738645 AGTATAATCCCATTCTCAGTTTGAAC 57.261 34.615 0.00 0.00 0.00 3.18
26 27 8.328758 AGTATAATCCCATTCTCAGTTTGAACA 58.671 33.333 0.00 0.00 0.00 3.18
27 28 8.956426 GTATAATCCCATTCTCAGTTTGAACAA 58.044 33.333 0.00 0.00 0.00 2.83
28 29 6.729690 AATCCCATTCTCAGTTTGAACAAA 57.270 33.333 0.00 0.00 0.00 2.83
29 30 6.729690 ATCCCATTCTCAGTTTGAACAAAA 57.270 33.333 1.47 0.00 31.33 2.44
30 31 6.537453 TCCCATTCTCAGTTTGAACAAAAA 57.463 33.333 1.47 0.00 31.33 1.94
31 32 6.337356 TCCCATTCTCAGTTTGAACAAAAAC 58.663 36.000 1.47 0.00 39.80 2.43
32 33 5.231991 CCCATTCTCAGTTTGAACAAAAACG 59.768 40.000 1.47 0.00 43.39 3.60
33 34 5.276348 CCATTCTCAGTTTGAACAAAAACGC 60.276 40.000 1.47 0.00 43.39 4.84
34 35 3.421741 TCTCAGTTTGAACAAAAACGCG 58.578 40.909 3.53 3.53 43.39 6.01
35 36 1.914700 TCAGTTTGAACAAAAACGCGC 59.085 42.857 5.73 0.00 43.39 6.86
36 37 1.006494 CAGTTTGAACAAAAACGCGCC 60.006 47.619 5.73 0.00 43.39 6.53
37 38 0.992802 GTTTGAACAAAAACGCGCCA 59.007 45.000 5.73 0.00 30.90 5.69
38 39 0.992802 TTTGAACAAAAACGCGCCAC 59.007 45.000 5.73 0.00 0.00 5.01
39 40 4.684965 GTTTGAACAAAAACGCGCCACG 62.685 50.000 5.73 0.00 38.89 4.94
49 50 4.515107 GCGCCACGAGACAAAAAG 57.485 55.556 0.00 0.00 0.00 2.27
50 51 1.938861 GCGCCACGAGACAAAAAGA 59.061 52.632 0.00 0.00 0.00 2.52
51 52 0.306533 GCGCCACGAGACAAAAAGAA 59.693 50.000 0.00 0.00 0.00 2.52
52 53 1.660333 GCGCCACGAGACAAAAAGAAG 60.660 52.381 0.00 0.00 0.00 2.85
53 54 1.597663 CGCCACGAGACAAAAAGAAGT 59.402 47.619 0.00 0.00 0.00 3.01
54 55 2.348591 CGCCACGAGACAAAAAGAAGTC 60.349 50.000 0.00 0.00 35.02 3.01
61 62 3.481453 AGACAAAAAGAAGTCTCCCAGC 58.519 45.455 0.00 0.00 40.96 4.85
62 63 2.222027 ACAAAAAGAAGTCTCCCAGCG 58.778 47.619 0.00 0.00 0.00 5.18
63 64 2.158813 ACAAAAAGAAGTCTCCCAGCGA 60.159 45.455 0.00 0.00 0.00 4.93
64 65 2.464157 AAAAGAAGTCTCCCAGCGAG 57.536 50.000 0.00 0.00 40.30 5.03
65 66 1.343069 AAAGAAGTCTCCCAGCGAGT 58.657 50.000 0.00 0.00 39.84 4.18
66 67 0.605589 AAGAAGTCTCCCAGCGAGTG 59.394 55.000 0.00 0.00 39.84 3.51
67 68 1.446966 GAAGTCTCCCAGCGAGTGC 60.447 63.158 0.00 0.00 39.84 4.40
68 69 2.844072 GAAGTCTCCCAGCGAGTGCC 62.844 65.000 0.00 0.00 44.31 5.01
69 70 4.803426 GTCTCCCAGCGAGTGCCG 62.803 72.222 0.00 0.00 44.31 5.69
71 72 4.379243 CTCCCAGCGAGTGCCGTT 62.379 66.667 0.00 0.00 44.31 4.44
72 73 4.680237 TCCCAGCGAGTGCCGTTG 62.680 66.667 0.00 0.00 46.90 4.10
79 80 3.712881 GAGTGCCGTTGCGTCCAC 61.713 66.667 0.00 0.00 41.78 4.02
80 81 4.539083 AGTGCCGTTGCGTCCACA 62.539 61.111 10.46 0.00 41.78 4.17
81 82 4.307908 GTGCCGTTGCGTCCACAC 62.308 66.667 0.00 0.00 41.78 3.82
82 83 4.840005 TGCCGTTGCGTCCACACA 62.840 61.111 0.00 0.00 41.78 3.72
83 84 4.012895 GCCGTTGCGTCCACACAG 62.013 66.667 0.00 0.00 0.00 3.66
84 85 2.587753 CCGTTGCGTCCACACAGT 60.588 61.111 0.00 0.00 0.00 3.55
85 86 2.177580 CCGTTGCGTCCACACAGTT 61.178 57.895 0.00 0.00 0.00 3.16
86 87 0.876777 CCGTTGCGTCCACACAGTTA 60.877 55.000 0.00 0.00 0.00 2.24
87 88 1.144969 CGTTGCGTCCACACAGTTAT 58.855 50.000 0.00 0.00 0.00 1.89
88 89 2.330286 CGTTGCGTCCACACAGTTATA 58.670 47.619 0.00 0.00 0.00 0.98
89 90 2.344441 CGTTGCGTCCACACAGTTATAG 59.656 50.000 0.00 0.00 0.00 1.31
90 91 2.665649 TGCGTCCACACAGTTATAGG 57.334 50.000 0.00 0.00 0.00 2.57
91 92 2.172679 TGCGTCCACACAGTTATAGGA 58.827 47.619 0.00 0.00 0.00 2.94
92 93 2.563620 TGCGTCCACACAGTTATAGGAA 59.436 45.455 0.00 0.00 0.00 3.36
93 94 3.007074 TGCGTCCACACAGTTATAGGAAA 59.993 43.478 0.00 0.00 0.00 3.13
94 95 3.617263 GCGTCCACACAGTTATAGGAAAG 59.383 47.826 0.00 0.00 0.00 2.62
95 96 3.617263 CGTCCACACAGTTATAGGAAAGC 59.383 47.826 0.00 0.00 0.00 3.51
96 97 4.620803 CGTCCACACAGTTATAGGAAAGCT 60.621 45.833 0.00 0.00 0.00 3.74
97 98 5.393787 CGTCCACACAGTTATAGGAAAGCTA 60.394 44.000 0.00 0.00 0.00 3.32
98 99 5.811100 GTCCACACAGTTATAGGAAAGCTAC 59.189 44.000 0.00 0.00 0.00 3.58
99 100 5.482526 TCCACACAGTTATAGGAAAGCTACA 59.517 40.000 0.00 0.00 0.00 2.74
100 101 5.581085 CCACACAGTTATAGGAAAGCTACAC 59.419 44.000 0.00 0.00 0.00 2.90
101 102 5.581085 CACACAGTTATAGGAAAGCTACACC 59.419 44.000 0.00 0.00 0.00 4.16
102 103 5.116882 CACAGTTATAGGAAAGCTACACCC 58.883 45.833 0.00 0.00 0.00 4.61
103 104 5.030820 ACAGTTATAGGAAAGCTACACCCT 58.969 41.667 0.00 0.00 0.00 4.34
104 105 5.128991 ACAGTTATAGGAAAGCTACACCCTC 59.871 44.000 0.00 0.00 0.00 4.30
105 106 4.654724 AGTTATAGGAAAGCTACACCCTCC 59.345 45.833 0.00 0.00 0.00 4.30
120 121 1.174712 CCTCCAACCAGCACACCTTG 61.175 60.000 0.00 0.00 0.00 3.61
194 202 5.039333 CCTACAAGGATACGGTTTTAGACG 58.961 45.833 0.00 0.00 46.39 4.18
238 246 2.363680 ACATGATCGATCACCTCACCTC 59.636 50.000 29.49 0.00 40.03 3.85
239 247 2.143876 TGATCGATCACCTCACCTCA 57.856 50.000 23.99 0.00 0.00 3.86
341 352 2.089854 GGTGTTGCATGACGCCTAG 58.910 57.895 12.89 0.00 44.81 3.02
342 353 0.673644 GGTGTTGCATGACGCCTAGT 60.674 55.000 12.89 0.00 44.81 2.57
351 362 6.775594 TGCATGACGCCTAGTATATAAGAT 57.224 37.500 0.00 0.00 41.33 2.40
352 363 7.875327 TGCATGACGCCTAGTATATAAGATA 57.125 36.000 0.00 0.00 41.33 1.98
384 395 1.680522 CTGGTCTGGTCTCCCCATCG 61.681 65.000 0.00 0.00 44.15 3.84
662 689 0.765519 ACCCGACCCATACCATACCC 60.766 60.000 0.00 0.00 0.00 3.69
663 690 0.473117 CCCGACCCATACCATACCCT 60.473 60.000 0.00 0.00 0.00 4.34
664 691 0.974383 CCGACCCATACCATACCCTC 59.026 60.000 0.00 0.00 0.00 4.30
669 696 1.198759 CCATACCATACCCTCCCCCG 61.199 65.000 0.00 0.00 0.00 5.73
670 697 1.160145 ATACCATACCCTCCCCCGG 59.840 63.158 0.00 0.00 0.00 5.73
671 698 3.779623 TACCATACCCTCCCCCGGC 62.780 68.421 0.00 0.00 0.00 6.13
673 700 3.560251 CATACCCTCCCCCGGCAG 61.560 72.222 0.00 0.00 0.00 4.85
691 718 3.857854 GCAGACTGGCACGCATCG 61.858 66.667 4.26 0.00 0.00 3.84
704 734 1.673009 GCATCGTTTTCCACCCGGA 60.673 57.895 0.73 0.00 40.60 5.14
705 735 1.029947 GCATCGTTTTCCACCCGGAT 61.030 55.000 0.73 0.00 42.41 4.18
706 736 1.014352 CATCGTTTTCCACCCGGATC 58.986 55.000 0.73 0.00 42.41 3.36
707 737 0.616371 ATCGTTTTCCACCCGGATCA 59.384 50.000 0.73 0.00 42.41 2.92
708 738 0.616371 TCGTTTTCCACCCGGATCAT 59.384 50.000 0.73 0.00 42.41 2.45
709 739 1.014352 CGTTTTCCACCCGGATCATC 58.986 55.000 0.73 0.00 42.41 2.92
710 740 1.014352 GTTTTCCACCCGGATCATCG 58.986 55.000 0.73 0.00 42.41 3.84
711 741 0.906066 TTTTCCACCCGGATCATCGA 59.094 50.000 0.73 0.00 42.41 3.59
712 742 1.128200 TTTCCACCCGGATCATCGAT 58.872 50.000 0.73 0.00 42.41 3.59
713 743 0.679505 TTCCACCCGGATCATCGATC 59.320 55.000 0.73 0.00 42.41 3.69
714 744 1.080501 CCACCCGGATCATCGATCG 60.081 63.158 9.36 9.36 39.72 3.69
715 745 1.080501 CACCCGGATCATCGATCGG 60.081 63.158 16.41 14.55 39.72 4.18
716 746 1.228459 ACCCGGATCATCGATCGGA 60.228 57.895 21.16 5.85 40.34 4.55
717 747 1.213013 CCCGGATCATCGATCGGAC 59.787 63.158 21.16 2.63 40.34 4.79
718 748 1.154207 CCGGATCATCGATCGGACG 60.154 63.158 16.41 9.24 40.34 4.79
719 749 1.797933 CGGATCATCGATCGGACGC 60.798 63.158 16.41 1.44 40.34 5.19
720 750 1.797933 GGATCATCGATCGGACGCG 60.798 63.158 16.41 3.53 39.72 6.01
748 778 4.785453 GCCTCCGCCTTGTCCCTG 62.785 72.222 0.00 0.00 0.00 4.45
749 779 3.003173 CCTCCGCCTTGTCCCTGA 61.003 66.667 0.00 0.00 0.00 3.86
750 780 2.592993 CCTCCGCCTTGTCCCTGAA 61.593 63.158 0.00 0.00 0.00 3.02
751 781 1.376037 CTCCGCCTTGTCCCTGAAC 60.376 63.158 0.00 0.00 0.00 3.18
752 782 1.831652 CTCCGCCTTGTCCCTGAACT 61.832 60.000 0.00 0.00 0.00 3.01
753 783 1.672356 CCGCCTTGTCCCTGAACTG 60.672 63.158 0.00 0.00 0.00 3.16
754 784 1.672356 CGCCTTGTCCCTGAACTGG 60.672 63.158 0.00 0.00 0.00 4.00
755 785 1.761174 GCCTTGTCCCTGAACTGGA 59.239 57.895 0.00 0.00 0.00 3.86
756 786 0.110486 GCCTTGTCCCTGAACTGGAA 59.890 55.000 0.00 0.00 32.59 3.53
757 787 1.897560 CCTTGTCCCTGAACTGGAAC 58.102 55.000 0.00 0.00 32.59 3.62
758 788 1.512926 CTTGTCCCTGAACTGGAACG 58.487 55.000 0.00 0.00 32.59 3.95
759 789 0.534203 TTGTCCCTGAACTGGAACGC 60.534 55.000 0.00 0.00 32.59 4.84
760 790 2.027625 GTCCCTGAACTGGAACGCG 61.028 63.158 3.53 3.53 32.59 6.01
761 791 2.742372 CCCTGAACTGGAACGCGG 60.742 66.667 12.47 0.00 0.00 6.46
762 792 3.423154 CCTGAACTGGAACGCGGC 61.423 66.667 12.47 0.92 0.00 6.53
763 793 3.423154 CTGAACTGGAACGCGGCC 61.423 66.667 12.47 12.61 0.00 6.13
1177 1230 1.132643 CGTCTTCTTAGTCTCACCCCG 59.867 57.143 0.00 0.00 0.00 5.73
1288 1347 7.603784 TCGTATTGCTTCGGAGTATATAGTGTA 59.396 37.037 0.00 0.00 0.00 2.90
1459 1518 3.317280 CCAGGGCTGGGAGTTAGTA 57.683 57.895 0.00 0.00 46.81 1.82
1460 1519 1.123928 CCAGGGCTGGGAGTTAGTAG 58.876 60.000 0.00 0.00 46.81 2.57
1461 1520 1.622725 CCAGGGCTGGGAGTTAGTAGT 60.623 57.143 0.00 0.00 46.81 2.73
1472 1531 4.939271 GGAGTTAGTAGTCTCCAATGCTC 58.061 47.826 14.64 0.00 46.59 4.26
1473 1532 4.647399 GGAGTTAGTAGTCTCCAATGCTCT 59.353 45.833 14.64 0.00 46.59 4.09
1474 1533 5.128008 GGAGTTAGTAGTCTCCAATGCTCTT 59.872 44.000 14.64 0.00 46.59 2.85
1475 1534 6.321690 GGAGTTAGTAGTCTCCAATGCTCTTA 59.678 42.308 14.64 0.00 46.59 2.10
1476 1535 7.014808 GGAGTTAGTAGTCTCCAATGCTCTTAT 59.985 40.741 14.64 0.00 46.59 1.73
1477 1536 8.998277 AGTTAGTAGTCTCCAATGCTCTTATA 57.002 34.615 0.00 0.00 0.00 0.98
1479 1538 9.632807 GTTAGTAGTCTCCAATGCTCTTATATG 57.367 37.037 0.00 0.00 0.00 1.78
1480 1539 6.696411 AGTAGTCTCCAATGCTCTTATATGC 58.304 40.000 0.00 0.00 0.00 3.14
1481 1540 4.904241 AGTCTCCAATGCTCTTATATGCC 58.096 43.478 0.00 0.00 0.00 4.40
1482 1541 4.349048 AGTCTCCAATGCTCTTATATGCCA 59.651 41.667 0.00 0.00 0.00 4.92
1483 1542 4.453819 GTCTCCAATGCTCTTATATGCCAC 59.546 45.833 0.00 0.00 0.00 5.01
1484 1543 4.349048 TCTCCAATGCTCTTATATGCCACT 59.651 41.667 0.00 0.00 0.00 4.00
1485 1544 4.645535 TCCAATGCTCTTATATGCCACTC 58.354 43.478 0.00 0.00 0.00 3.51
1486 1545 3.755378 CCAATGCTCTTATATGCCACTCC 59.245 47.826 0.00 0.00 0.00 3.85
1837 1901 3.969117 TGCAACTCAAGATTGTGTGAC 57.031 42.857 1.40 0.00 35.35 3.67
1866 1930 4.866508 ATGTCCTGACTCGTTTAAGACA 57.133 40.909 0.00 0.00 37.20 3.41
1869 1933 4.038763 TGTCCTGACTCGTTTAAGACATGT 59.961 41.667 0.00 0.00 0.00 3.21
1896 1989 2.447811 CTCTAGTCTACCCCTTAGGCCT 59.552 54.545 11.78 11.78 40.58 5.19
1972 2156 9.426837 CTGATTTCACACCATCACATTTTATTT 57.573 29.630 0.00 0.00 0.00 1.40
2427 2613 0.642156 TGCCCTCCCATCCTTCTCTA 59.358 55.000 0.00 0.00 0.00 2.43
2440 2626 7.420680 CCCATCCTTCTCTACCATCATTACTTT 60.421 40.741 0.00 0.00 0.00 2.66
2525 2745 2.954989 TCATCTCGATCAGAGGTTCCAG 59.045 50.000 12.54 0.00 46.82 3.86
2541 2761 8.919145 AGAGGTTCCAGTCTTATGAGTTTATAG 58.081 37.037 0.00 0.00 0.00 1.31
2578 2798 7.766278 GTGCTGTCCTAAAGAATAATTCAGAGA 59.234 37.037 0.00 0.00 0.00 3.10
2631 2851 6.883756 AGTAGTACTACTGGAAGGTGTCTTAC 59.116 42.308 30.33 3.76 44.11 2.34
2703 2923 9.520204 CAAATGTTCTACAAGTCAGTCATTTTT 57.480 29.630 0.00 0.00 33.82 1.94
2778 2998 8.958060 ACTATAGAGGTGCTCAAGGAATTATA 57.042 34.615 6.78 0.00 32.06 0.98
2924 3144 7.228706 GGTTGGTCTATTCAATCATTCCGTTAT 59.771 37.037 0.00 0.00 0.00 1.89
2966 3186 7.168302 GTCAGCTACTTAGTGCTACAATATGTG 59.832 40.741 8.49 0.00 37.81 3.21
2973 3193 5.023533 AGTGCTACAATATGTGGATCGTT 57.976 39.130 0.00 0.00 29.57 3.85
3045 3265 4.951715 TGATTTCTCCATTGATGAACCCAG 59.048 41.667 0.00 0.00 0.00 4.45
3111 3331 0.038744 CCACAAGGATGCACCCTTCT 59.961 55.000 10.32 0.00 44.30 2.85
3162 3383 9.667107 TTTTGTGGATACTTCTTTCTATGTAGG 57.333 33.333 0.00 0.00 37.61 3.18
3163 3384 7.361457 TGTGGATACTTCTTTCTATGTAGGG 57.639 40.000 0.00 0.00 37.61 3.53
3164 3385 7.130099 TGTGGATACTTCTTTCTATGTAGGGA 58.870 38.462 0.00 0.00 37.61 4.20
3165 3386 7.622081 TGTGGATACTTCTTTCTATGTAGGGAA 59.378 37.037 0.00 0.00 37.61 3.97
3166 3387 8.145122 GTGGATACTTCTTTCTATGTAGGGAAG 58.855 40.741 0.00 0.00 37.00 3.46
3167 3388 7.290248 TGGATACTTCTTTCTATGTAGGGAAGG 59.710 40.741 15.37 0.00 35.78 3.46
3168 3389 5.959583 ACTTCTTTCTATGTAGGGAAGGG 57.040 43.478 15.37 8.31 35.78 3.95
3169 3390 4.164413 ACTTCTTTCTATGTAGGGAAGGGC 59.836 45.833 15.37 0.00 35.78 5.19
3170 3391 4.008916 TCTTTCTATGTAGGGAAGGGCT 57.991 45.455 0.00 0.00 0.00 5.19
3171 3392 3.711704 TCTTTCTATGTAGGGAAGGGCTG 59.288 47.826 0.00 0.00 0.00 4.85
3172 3393 1.424638 TCTATGTAGGGAAGGGCTGC 58.575 55.000 0.00 0.00 0.00 5.25
3173 3394 0.034059 CTATGTAGGGAAGGGCTGCG 59.966 60.000 0.00 0.00 0.00 5.18
3174 3395 0.689745 TATGTAGGGAAGGGCTGCGT 60.690 55.000 0.00 0.00 0.00 5.24
3175 3396 0.689745 ATGTAGGGAAGGGCTGCGTA 60.690 55.000 0.00 0.00 0.00 4.42
3176 3397 1.143401 GTAGGGAAGGGCTGCGTAC 59.857 63.158 0.00 0.00 30.95 3.67
3177 3398 1.305465 TAGGGAAGGGCTGCGTACA 60.305 57.895 0.00 0.00 0.00 2.90
3178 3399 0.905809 TAGGGAAGGGCTGCGTACAA 60.906 55.000 0.00 0.00 0.00 2.41
3179 3400 1.077716 GGGAAGGGCTGCGTACAAT 60.078 57.895 0.00 0.00 0.00 2.71
3180 3401 0.179468 GGGAAGGGCTGCGTACAATA 59.821 55.000 0.00 0.00 0.00 1.90
3181 3402 1.583054 GGAAGGGCTGCGTACAATAG 58.417 55.000 0.00 0.00 0.00 1.73
3182 3403 1.138266 GGAAGGGCTGCGTACAATAGA 59.862 52.381 0.00 0.00 0.00 1.98
3183 3404 2.202566 GAAGGGCTGCGTACAATAGAC 58.797 52.381 0.00 0.00 0.00 2.59
3184 3405 0.464452 AGGGCTGCGTACAATAGACC 59.536 55.000 5.04 5.04 40.05 3.85
3185 3406 0.532196 GGGCTGCGTACAATAGACCC 60.532 60.000 2.22 4.10 33.29 4.46
3186 3407 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3187 3408 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3188 3409 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3189 3410 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3190 3411 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3191 3412 4.751060 CTGCGTACAATAGACCCAAAGTA 58.249 43.478 0.00 0.00 0.00 2.24
3192 3413 4.751060 TGCGTACAATAGACCCAAAGTAG 58.249 43.478 0.00 0.00 0.00 2.57
3193 3414 4.221262 TGCGTACAATAGACCCAAAGTAGT 59.779 41.667 0.00 0.00 0.00 2.73
3194 3415 4.802563 GCGTACAATAGACCCAAAGTAGTC 59.197 45.833 0.00 0.00 0.00 2.59
3195 3416 5.032863 CGTACAATAGACCCAAAGTAGTCG 58.967 45.833 0.00 0.00 38.08 4.18
3196 3417 4.467198 ACAATAGACCCAAAGTAGTCGG 57.533 45.455 0.00 0.00 38.08 4.79
3197 3418 4.091549 ACAATAGACCCAAAGTAGTCGGA 58.908 43.478 0.00 0.00 38.08 4.55
3198 3419 4.081807 ACAATAGACCCAAAGTAGTCGGAC 60.082 45.833 0.00 0.00 38.08 4.79
3199 3420 1.264295 AGACCCAAAGTAGTCGGACC 58.736 55.000 4.14 0.00 38.08 4.46
3200 3421 0.248565 GACCCAAAGTAGTCGGACCC 59.751 60.000 4.14 0.00 0.00 4.46
3201 3422 0.178912 ACCCAAAGTAGTCGGACCCT 60.179 55.000 4.14 0.00 0.00 4.34
3202 3423 0.981943 CCCAAAGTAGTCGGACCCTT 59.018 55.000 4.14 4.76 0.00 3.95
3203 3424 1.066358 CCCAAAGTAGTCGGACCCTTC 60.066 57.143 4.14 0.00 0.00 3.46
3204 3425 1.066358 CCAAAGTAGTCGGACCCTTCC 60.066 57.143 4.14 0.00 38.77 3.46
3205 3426 1.066358 CAAAGTAGTCGGACCCTTCCC 60.066 57.143 4.14 0.00 38.99 3.97
3206 3427 0.616964 AAGTAGTCGGACCCTTCCCC 60.617 60.000 4.14 0.00 38.99 4.81
3207 3428 2.043652 TAGTCGGACCCTTCCCCG 60.044 66.667 4.14 0.00 46.57 5.73
3208 3429 3.667217 TAGTCGGACCCTTCCCCGG 62.667 68.421 4.14 0.00 45.36 5.73
3213 3434 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
3240 3461 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3241 3462 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3242 3463 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3243 3464 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3244 3465 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3245 3466 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3465 3686 5.007136 GCTAGTGCATACTGGTCAAGATTTC 59.993 44.000 0.00 0.00 37.68 2.17
3534 3757 6.430925 TGAAACTGTGGAACCTTTGATCATAG 59.569 38.462 6.21 6.21 34.36 2.23
3603 3826 4.764308 TGAAAGCATGTGCATAGGTTAACA 59.236 37.500 8.10 1.61 45.16 2.41
3614 3837 6.475402 GTGCATAGGTTAACAATGGCAAATAC 59.525 38.462 17.18 4.26 0.00 1.89
3908 4133 6.928492 TCCTGAATATTTTGTTCCAAACTTGC 59.072 34.615 0.00 0.00 0.00 4.01
3910 4135 7.095523 CCTGAATATTTTGTTCCAAACTTGCTG 60.096 37.037 0.00 0.00 0.00 4.41
3938 4163 8.207521 TCTTTCCAAACCTAAATTGCTTTTTG 57.792 30.769 0.00 0.00 0.00 2.44
3944 4169 7.494298 CCAAACCTAAATTGCTTTTTGTACACT 59.506 33.333 0.00 0.00 0.00 3.55
3945 4170 8.878769 CAAACCTAAATTGCTTTTTGTACACTT 58.121 29.630 0.00 0.00 0.00 3.16
4087 4313 2.555123 TGCCTTCGCACAAGAATCC 58.445 52.632 0.00 0.00 41.12 3.01
4159 4385 6.532657 AGAATTGTTTTGAAGAACTTGTGCTG 59.467 34.615 0.00 0.00 0.00 4.41
4181 4408 6.681865 GCTGAAGGTAAAGACTCAGAGATACC 60.682 46.154 3.79 10.60 34.38 2.73
4346 4750 1.299541 ACAGACTCAGTTTTGCCGTG 58.700 50.000 0.00 0.00 0.00 4.94
4490 4894 3.443681 TCTGTGACGTATGATTGAGCTCA 59.556 43.478 13.74 13.74 0.00 4.26
4507 4911 2.736978 CTCACTATCTGTGGTCATCGC 58.263 52.381 0.00 0.00 46.20 4.58
4523 4927 2.679934 CGCATCGCAGGCAAGTTCA 61.680 57.895 0.00 0.00 0.00 3.18
4535 4939 4.403432 CAGGCAAGTTCATGATACCCAAAT 59.597 41.667 0.00 0.00 0.00 2.32
4583 4987 8.342634 GTTGTACATGAGTTGTGTCTAAACAAT 58.657 33.333 0.00 0.00 41.81 2.71
4722 5241 9.382244 GTCTAATAAGGTATAATTTGCGCAAAG 57.618 33.333 35.62 19.46 33.32 2.77
4743 5262 1.452108 CTTTGTCCCGGGGATGAGC 60.452 63.158 23.50 6.76 32.73 4.26
4826 5345 2.804421 TTATTGTCAAGATGTGCGCG 57.196 45.000 0.00 0.00 0.00 6.86
4858 5377 8.592105 TCTTTTGATAATTCCAGCAAACAAAG 57.408 30.769 0.00 0.00 33.82 2.77
4899 5418 2.341257 CCTTGATGAACAGGACACTCG 58.659 52.381 0.00 0.00 0.00 4.18
4915 5434 0.745486 CTCGTGGATGATGCAAGCCA 60.745 55.000 0.00 0.00 0.00 4.75
4962 5481 1.002251 TCGTTTCCTTCGCGCATTTTT 60.002 42.857 8.75 0.00 0.00 1.94
4964 5483 1.719246 GTTTCCTTCGCGCATTTTTCC 59.281 47.619 8.75 0.00 0.00 3.13
4965 5484 0.955178 TTCCTTCGCGCATTTTTCCA 59.045 45.000 8.75 0.00 0.00 3.53
4966 5485 0.521291 TCCTTCGCGCATTTTTCCAG 59.479 50.000 8.75 0.00 0.00 3.86
4967 5486 1.072666 CCTTCGCGCATTTTTCCAGC 61.073 55.000 8.75 0.00 0.00 4.85
4968 5487 0.387112 CTTCGCGCATTTTTCCAGCA 60.387 50.000 8.75 0.00 0.00 4.41
4969 5488 0.031314 TTCGCGCATTTTTCCAGCAA 59.969 45.000 8.75 0.00 0.00 3.91
4970 5489 0.031314 TCGCGCATTTTTCCAGCAAA 59.969 45.000 8.75 0.00 0.00 3.68
4972 5491 1.216122 GCGCATTTTTCCAGCAAACA 58.784 45.000 0.30 0.00 0.00 2.83
4974 5493 2.031437 GCGCATTTTTCCAGCAAACAAA 59.969 40.909 0.30 0.00 0.00 2.83
4975 5494 3.845662 GCGCATTTTTCCAGCAAACAAAG 60.846 43.478 0.30 0.00 0.00 2.77
4976 5495 3.555139 CGCATTTTTCCAGCAAACAAAGA 59.445 39.130 0.00 0.00 0.00 2.52
4977 5496 4.211794 CGCATTTTTCCAGCAAACAAAGAT 59.788 37.500 0.00 0.00 0.00 2.40
4978 5497 5.445845 GCATTTTTCCAGCAAACAAAGATG 58.554 37.500 0.00 0.00 0.00 2.90
4979 5498 5.007921 GCATTTTTCCAGCAAACAAAGATGT 59.992 36.000 0.00 0.00 43.14 3.06
4980 5499 6.652245 CATTTTTCCAGCAAACAAAGATGTC 58.348 36.000 0.00 0.00 39.40 3.06
4981 5500 4.320608 TTTCCAGCAAACAAAGATGTCC 57.679 40.909 0.00 0.00 39.40 4.02
4982 5501 2.942804 TCCAGCAAACAAAGATGTCCA 58.057 42.857 0.00 0.00 39.40 4.02
4983 5502 3.499338 TCCAGCAAACAAAGATGTCCAT 58.501 40.909 0.00 0.00 39.40 3.41
4984 5503 3.256383 TCCAGCAAACAAAGATGTCCATG 59.744 43.478 0.00 0.00 39.40 3.66
4985 5504 3.581755 CAGCAAACAAAGATGTCCATGG 58.418 45.455 4.97 4.97 39.40 3.66
4986 5505 3.256383 CAGCAAACAAAGATGTCCATGGA 59.744 43.478 11.44 11.44 39.40 3.41
4987 5506 3.508793 AGCAAACAAAGATGTCCATGGAG 59.491 43.478 16.81 3.76 39.40 3.86
4988 5507 3.841643 CAAACAAAGATGTCCATGGAGC 58.158 45.455 16.81 10.93 39.40 4.70
4989 5508 3.446442 AACAAAGATGTCCATGGAGCT 57.554 42.857 16.81 10.32 39.40 4.09
4990 5509 3.446442 ACAAAGATGTCCATGGAGCTT 57.554 42.857 16.81 15.84 33.41 3.74
4991 5510 3.771216 ACAAAGATGTCCATGGAGCTTT 58.229 40.909 16.81 20.46 33.41 3.51
4992 5511 4.154942 ACAAAGATGTCCATGGAGCTTTT 58.845 39.130 24.14 16.29 33.41 2.27
4993 5512 4.021719 ACAAAGATGTCCATGGAGCTTTTG 60.022 41.667 24.14 24.54 33.41 2.44
4994 5513 3.446442 AGATGTCCATGGAGCTTTTGT 57.554 42.857 16.81 0.00 0.00 2.83
5008 5527 7.090173 TGGAGCTTTTGTAAACAAAGATATGC 58.910 34.615 8.19 8.93 45.34 3.14
5018 5537 1.891150 CAAAGATATGCCCATGGAGCC 59.109 52.381 15.22 1.33 0.00 4.70
5057 5576 2.925170 ACAGGTGCCGAAGAGCCT 60.925 61.111 0.00 0.00 0.00 4.58
5060 5579 1.000486 AGGTGCCGAAGAGCCTAGA 60.000 57.895 0.00 0.00 0.00 2.43
5063 5582 1.758514 TGCCGAAGAGCCTAGAGGG 60.759 63.158 0.00 0.00 35.18 4.30
5120 5639 4.037923 TGACAGTGAAAGAAATTGGAAGCC 59.962 41.667 0.00 0.00 0.00 4.35
5160 5679 4.787551 ACCCTAACCGCAAATTGATATCA 58.212 39.130 0.00 0.00 0.00 2.15
5210 5729 1.266867 TGCTGCTGTGGAGGCATAGA 61.267 55.000 0.00 0.00 39.07 1.98
5240 5759 6.656314 TTAAGCGGTTGTAACATATGTGAG 57.344 37.500 9.63 0.00 0.00 3.51
5385 5904 3.130340 AGAAACACCAACGACTGCAAATT 59.870 39.130 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.328758 TGTTCAAACTGAGAATGGGATTATACT 58.671 33.333 0.00 0.00 0.00 2.12
1 2 8.506168 TGTTCAAACTGAGAATGGGATTATAC 57.494 34.615 0.00 0.00 0.00 1.47
2 3 9.527157 TTTGTTCAAACTGAGAATGGGATTATA 57.473 29.630 0.00 0.00 0.00 0.98
3 4 8.421249 TTTGTTCAAACTGAGAATGGGATTAT 57.579 30.769 0.00 0.00 0.00 1.28
4 5 7.831691 TTTGTTCAAACTGAGAATGGGATTA 57.168 32.000 0.00 0.00 0.00 1.75
5 6 6.729690 TTTGTTCAAACTGAGAATGGGATT 57.270 33.333 0.00 0.00 0.00 3.01
6 7 6.729690 TTTTGTTCAAACTGAGAATGGGAT 57.270 33.333 0.00 0.00 0.00 3.85
7 8 6.337356 GTTTTTGTTCAAACTGAGAATGGGA 58.663 36.000 0.00 0.00 34.35 4.37
8 9 5.231991 CGTTTTTGTTCAAACTGAGAATGGG 59.768 40.000 0.00 0.00 34.91 4.00
9 10 5.276348 GCGTTTTTGTTCAAACTGAGAATGG 60.276 40.000 0.00 0.00 34.91 3.16
10 11 5.552472 CGCGTTTTTGTTCAAACTGAGAATG 60.552 40.000 0.00 0.00 34.91 2.67
11 12 4.499040 CGCGTTTTTGTTCAAACTGAGAAT 59.501 37.500 0.00 0.00 34.91 2.40
12 13 3.849145 CGCGTTTTTGTTCAAACTGAGAA 59.151 39.130 0.00 0.00 34.91 2.87
13 14 3.421741 CGCGTTTTTGTTCAAACTGAGA 58.578 40.909 0.00 0.00 34.91 3.27
14 15 2.035756 GCGCGTTTTTGTTCAAACTGAG 60.036 45.455 8.43 0.00 34.91 3.35
15 16 1.914700 GCGCGTTTTTGTTCAAACTGA 59.085 42.857 8.43 0.00 34.91 3.41
16 17 1.006494 GGCGCGTTTTTGTTCAAACTG 60.006 47.619 8.43 0.00 34.91 3.16
17 18 1.273688 GGCGCGTTTTTGTTCAAACT 58.726 45.000 8.43 0.00 34.91 2.66
18 19 0.992802 TGGCGCGTTTTTGTTCAAAC 59.007 45.000 8.43 0.00 33.90 2.93
19 20 0.992802 GTGGCGCGTTTTTGTTCAAA 59.007 45.000 8.43 0.00 0.00 2.69
20 21 1.134530 CGTGGCGCGTTTTTGTTCAA 61.135 50.000 13.13 0.00 35.54 2.69
21 22 1.583967 CGTGGCGCGTTTTTGTTCA 60.584 52.632 13.13 0.00 35.54 3.18
22 23 1.259544 CTCGTGGCGCGTTTTTGTTC 61.260 55.000 20.88 0.00 42.13 3.18
23 24 1.298041 CTCGTGGCGCGTTTTTGTT 60.298 52.632 20.88 0.00 42.13 2.83
24 25 2.174969 TCTCGTGGCGCGTTTTTGT 61.175 52.632 20.88 0.00 42.13 2.83
25 26 1.721133 GTCTCGTGGCGCGTTTTTG 60.721 57.895 20.88 7.02 42.13 2.44
26 27 1.707239 TTGTCTCGTGGCGCGTTTTT 61.707 50.000 20.88 0.00 42.13 1.94
27 28 1.707239 TTTGTCTCGTGGCGCGTTTT 61.707 50.000 20.88 0.00 42.13 2.43
28 29 1.707239 TTTTGTCTCGTGGCGCGTTT 61.707 50.000 20.88 0.00 42.13 3.60
29 30 1.707239 TTTTTGTCTCGTGGCGCGTT 61.707 50.000 20.88 0.00 42.13 4.84
30 31 2.101209 CTTTTTGTCTCGTGGCGCGT 62.101 55.000 20.88 0.00 42.13 6.01
31 32 1.438710 CTTTTTGTCTCGTGGCGCG 60.439 57.895 15.42 15.42 43.01 6.86
32 33 0.306533 TTCTTTTTGTCTCGTGGCGC 59.693 50.000 0.00 0.00 0.00 6.53
33 34 1.597663 ACTTCTTTTTGTCTCGTGGCG 59.402 47.619 0.00 0.00 0.00 5.69
34 35 2.872858 AGACTTCTTTTTGTCTCGTGGC 59.127 45.455 0.00 0.00 39.04 5.01
35 36 4.717188 GAGACTTCTTTTTGTCTCGTGG 57.283 45.455 7.27 0.00 46.10 4.94
40 41 3.481453 GCTGGGAGACTTCTTTTTGTCT 58.519 45.455 0.00 0.00 45.06 3.41
41 42 2.224314 CGCTGGGAGACTTCTTTTTGTC 59.776 50.000 0.00 0.00 0.00 3.18
42 43 2.158813 TCGCTGGGAGACTTCTTTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
43 44 2.481952 CTCGCTGGGAGACTTCTTTTTG 59.518 50.000 15.95 0.00 46.23 2.44
44 45 2.104963 ACTCGCTGGGAGACTTCTTTTT 59.895 45.455 26.04 0.00 46.23 1.94
45 46 1.694696 ACTCGCTGGGAGACTTCTTTT 59.305 47.619 26.04 0.36 46.23 2.27
46 47 1.001406 CACTCGCTGGGAGACTTCTTT 59.999 52.381 26.04 1.08 46.23 2.52
47 48 0.605589 CACTCGCTGGGAGACTTCTT 59.394 55.000 26.04 1.79 46.23 2.52
48 49 1.882989 GCACTCGCTGGGAGACTTCT 61.883 60.000 26.04 2.51 46.23 2.85
49 50 1.446966 GCACTCGCTGGGAGACTTC 60.447 63.158 26.04 9.38 46.23 3.01
50 51 2.659610 GCACTCGCTGGGAGACTT 59.340 61.111 26.04 3.25 46.23 3.01
51 52 3.386237 GGCACTCGCTGGGAGACT 61.386 66.667 26.04 3.97 46.23 3.24
52 53 4.803426 CGGCACTCGCTGGGAGAC 62.803 72.222 26.04 17.02 46.23 3.36
62 63 3.712881 GTGGACGCAACGGCACTC 61.713 66.667 0.00 0.00 41.24 3.51
63 64 4.539083 TGTGGACGCAACGGCACT 62.539 61.111 0.00 0.00 41.24 4.40
64 65 4.307908 GTGTGGACGCAACGGCAC 62.308 66.667 0.00 0.00 41.24 5.01
65 66 4.840005 TGTGTGGACGCAACGGCA 62.840 61.111 0.00 0.00 41.24 5.69
66 67 4.012895 CTGTGTGGACGCAACGGC 62.013 66.667 0.00 0.00 35.77 5.68
67 68 0.876777 TAACTGTGTGGACGCAACGG 60.877 55.000 0.00 0.00 35.77 4.44
68 69 1.144969 ATAACTGTGTGGACGCAACG 58.855 50.000 0.00 0.00 35.77 4.10
69 70 2.671396 CCTATAACTGTGTGGACGCAAC 59.329 50.000 0.00 0.00 35.77 4.17
70 71 2.563620 TCCTATAACTGTGTGGACGCAA 59.436 45.455 0.00 0.00 35.77 4.85
71 72 2.172679 TCCTATAACTGTGTGGACGCA 58.827 47.619 0.00 0.00 34.84 5.24
72 73 2.953466 TCCTATAACTGTGTGGACGC 57.047 50.000 0.00 0.00 0.00 5.19
73 74 3.617263 GCTTTCCTATAACTGTGTGGACG 59.383 47.826 0.00 0.00 0.00 4.79
74 75 4.833390 AGCTTTCCTATAACTGTGTGGAC 58.167 43.478 0.00 0.00 0.00 4.02
75 76 5.482526 TGTAGCTTTCCTATAACTGTGTGGA 59.517 40.000 0.00 0.00 0.00 4.02
76 77 5.581085 GTGTAGCTTTCCTATAACTGTGTGG 59.419 44.000 0.00 0.00 0.00 4.17
77 78 5.581085 GGTGTAGCTTTCCTATAACTGTGTG 59.419 44.000 0.00 0.00 0.00 3.82
78 79 5.338137 GGGTGTAGCTTTCCTATAACTGTGT 60.338 44.000 0.00 0.00 0.00 3.72
79 80 5.104900 AGGGTGTAGCTTTCCTATAACTGTG 60.105 44.000 0.00 0.00 0.00 3.66
80 81 5.030820 AGGGTGTAGCTTTCCTATAACTGT 58.969 41.667 0.00 0.00 0.00 3.55
81 82 5.453480 GGAGGGTGTAGCTTTCCTATAACTG 60.453 48.000 0.00 0.00 0.00 3.16
82 83 4.654724 GGAGGGTGTAGCTTTCCTATAACT 59.345 45.833 0.00 0.00 0.00 2.24
83 84 4.407945 TGGAGGGTGTAGCTTTCCTATAAC 59.592 45.833 0.00 0.00 0.00 1.89
84 85 4.627015 TGGAGGGTGTAGCTTTCCTATAA 58.373 43.478 0.00 0.00 0.00 0.98
85 86 4.274794 TGGAGGGTGTAGCTTTCCTATA 57.725 45.455 0.00 0.00 0.00 1.31
86 87 3.130734 TGGAGGGTGTAGCTTTCCTAT 57.869 47.619 0.00 0.00 0.00 2.57
87 88 2.570302 GTTGGAGGGTGTAGCTTTCCTA 59.430 50.000 0.00 0.00 0.00 2.94
88 89 1.351350 GTTGGAGGGTGTAGCTTTCCT 59.649 52.381 0.00 0.00 0.00 3.36
89 90 1.613520 GGTTGGAGGGTGTAGCTTTCC 60.614 57.143 0.00 0.00 0.00 3.13
90 91 1.073284 TGGTTGGAGGGTGTAGCTTTC 59.927 52.381 0.00 0.00 0.00 2.62
91 92 1.073923 CTGGTTGGAGGGTGTAGCTTT 59.926 52.381 0.00 0.00 0.00 3.51
92 93 0.693049 CTGGTTGGAGGGTGTAGCTT 59.307 55.000 0.00 0.00 0.00 3.74
93 94 1.842381 GCTGGTTGGAGGGTGTAGCT 61.842 60.000 0.00 0.00 0.00 3.32
94 95 1.377333 GCTGGTTGGAGGGTGTAGC 60.377 63.158 0.00 0.00 0.00 3.58
95 96 0.321653 GTGCTGGTTGGAGGGTGTAG 60.322 60.000 0.00 0.00 0.00 2.74
96 97 1.057275 TGTGCTGGTTGGAGGGTGTA 61.057 55.000 0.00 0.00 0.00 2.90
97 98 2.382770 TGTGCTGGTTGGAGGGTGT 61.383 57.895 0.00 0.00 0.00 4.16
98 99 1.898574 GTGTGCTGGTTGGAGGGTG 60.899 63.158 0.00 0.00 0.00 4.61
99 100 2.515901 GTGTGCTGGTTGGAGGGT 59.484 61.111 0.00 0.00 0.00 4.34
100 101 2.282462 GGTGTGCTGGTTGGAGGG 60.282 66.667 0.00 0.00 0.00 4.30
101 102 1.151450 AAGGTGTGCTGGTTGGAGG 59.849 57.895 0.00 0.00 0.00 4.30
102 103 0.179020 TCAAGGTGTGCTGGTTGGAG 60.179 55.000 0.00 0.00 0.00 3.86
103 104 0.179020 CTCAAGGTGTGCTGGTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
104 105 1.799258 GCTCAAGGTGTGCTGGTTGG 61.799 60.000 0.00 0.00 34.37 3.77
105 106 1.102809 TGCTCAAGGTGTGCTGGTTG 61.103 55.000 4.19 0.00 37.71 3.77
120 121 2.094182 TCGGTTGTTATCTCCAGTGCTC 60.094 50.000 0.00 0.00 0.00 4.26
202 210 0.723414 CATGTCATGTGACTCGGCAC 59.277 55.000 13.71 0.00 44.99 5.01
351 362 6.022107 ACCAGACCAGGTATACATACTGTA 57.978 41.667 5.01 0.00 40.98 2.74
352 363 4.880164 ACCAGACCAGGTATACATACTGT 58.120 43.478 5.01 0.00 40.98 3.55
358 369 3.028094 GGAGACCAGACCAGGTATACA 57.972 52.381 5.01 0.00 43.38 2.29
384 395 1.331756 GGATGTGTGATCGTTGATGGC 59.668 52.381 0.00 0.00 0.00 4.40
671 698 4.994471 TGCGTGCCAGTCTGCCTG 62.994 66.667 0.00 0.00 41.15 4.85
672 699 3.965539 GATGCGTGCCAGTCTGCCT 62.966 63.158 0.00 0.00 0.00 4.75
673 700 3.503363 GATGCGTGCCAGTCTGCC 61.503 66.667 0.00 0.00 0.00 4.85
684 711 2.322081 CGGGTGGAAAACGATGCGT 61.322 57.895 0.00 0.00 43.97 5.24
704 734 2.429236 GCGCGTCCGATCGATGAT 60.429 61.111 18.66 0.00 36.29 2.45
705 735 4.956537 CGCGCGTCCGATCGATGA 62.957 66.667 24.19 2.87 36.29 2.92
733 763 1.376037 GTTCAGGGACAAGGCGGAG 60.376 63.158 0.00 0.00 0.00 4.63
734 764 1.841556 AGTTCAGGGACAAGGCGGA 60.842 57.895 0.00 0.00 0.00 5.54
735 765 1.672356 CAGTTCAGGGACAAGGCGG 60.672 63.158 0.00 0.00 0.00 6.13
736 766 1.672356 CCAGTTCAGGGACAAGGCG 60.672 63.158 0.00 0.00 0.00 5.52
737 767 0.110486 TTCCAGTTCAGGGACAAGGC 59.890 55.000 0.00 0.00 33.18 4.35
738 768 1.878102 CGTTCCAGTTCAGGGACAAGG 60.878 57.143 0.00 0.00 36.95 3.61
739 769 1.512926 CGTTCCAGTTCAGGGACAAG 58.487 55.000 0.00 0.00 36.95 3.16
740 770 0.534203 GCGTTCCAGTTCAGGGACAA 60.534 55.000 0.00 0.00 36.95 3.18
741 771 1.070786 GCGTTCCAGTTCAGGGACA 59.929 57.895 0.00 0.00 36.95 4.02
742 772 2.027625 CGCGTTCCAGTTCAGGGAC 61.028 63.158 0.00 0.00 33.18 4.46
743 773 2.342279 CGCGTTCCAGTTCAGGGA 59.658 61.111 0.00 0.00 0.00 4.20
744 774 2.742372 CCGCGTTCCAGTTCAGGG 60.742 66.667 4.92 0.00 0.00 4.45
745 775 3.423154 GCCGCGTTCCAGTTCAGG 61.423 66.667 4.92 0.00 0.00 3.86
746 776 3.423154 GGCCGCGTTCCAGTTCAG 61.423 66.667 4.92 0.00 0.00 3.02
791 821 1.901654 TTATGGGGTTCCGTCCGGTG 61.902 60.000 0.00 0.00 36.47 4.94
792 822 1.200092 TTTATGGGGTTCCGTCCGGT 61.200 55.000 0.00 0.00 36.47 5.28
793 823 0.745486 GTTTATGGGGTTCCGTCCGG 60.745 60.000 0.00 0.00 35.24 5.14
794 824 0.745486 GGTTTATGGGGTTCCGTCCG 60.745 60.000 0.00 0.00 35.24 4.79
795 825 0.328926 TGGTTTATGGGGTTCCGTCC 59.671 55.000 0.00 0.00 35.24 4.79
797 827 0.323087 GCTGGTTTATGGGGTTCCGT 60.323 55.000 0.00 0.00 35.24 4.69
799 829 1.035385 CGGCTGGTTTATGGGGTTCC 61.035 60.000 0.00 0.00 0.00 3.62
800 830 0.323087 ACGGCTGGTTTATGGGGTTC 60.323 55.000 0.00 0.00 0.00 3.62
801 831 0.323087 GACGGCTGGTTTATGGGGTT 60.323 55.000 0.00 0.00 0.00 4.11
802 832 1.301954 GACGGCTGGTTTATGGGGT 59.698 57.895 0.00 0.00 0.00 4.95
803 833 1.817941 CGACGGCTGGTTTATGGGG 60.818 63.158 0.00 0.00 0.00 4.96
804 834 2.469516 GCGACGGCTGGTTTATGGG 61.470 63.158 0.00 0.00 35.83 4.00
1288 1347 0.397254 ATCCGCTACCTACTGCCACT 60.397 55.000 0.00 0.00 0.00 4.00
1459 1518 4.349048 TGGCATATAAGAGCATTGGAGACT 59.651 41.667 0.00 0.00 0.00 3.24
1460 1519 4.453819 GTGGCATATAAGAGCATTGGAGAC 59.546 45.833 0.00 0.00 0.00 3.36
1461 1520 4.349048 AGTGGCATATAAGAGCATTGGAGA 59.651 41.667 0.00 0.00 0.00 3.71
1472 1531 4.955811 TGGTACTGGAGTGGCATATAAG 57.044 45.455 0.00 0.00 0.00 1.73
1473 1532 6.500400 ACATATGGTACTGGAGTGGCATATAA 59.500 38.462 7.80 0.00 0.00 0.98
1474 1533 6.022958 ACATATGGTACTGGAGTGGCATATA 58.977 40.000 7.80 0.00 0.00 0.86
1475 1534 4.846367 ACATATGGTACTGGAGTGGCATAT 59.154 41.667 7.80 0.00 0.00 1.78
1476 1535 4.231273 ACATATGGTACTGGAGTGGCATA 58.769 43.478 7.80 0.00 0.00 3.14
1477 1536 3.048600 ACATATGGTACTGGAGTGGCAT 58.951 45.455 7.80 0.00 0.00 4.40
1479 1538 2.224305 GGACATATGGTACTGGAGTGGC 60.224 54.545 7.80 0.00 0.00 5.01
1480 1539 3.309296 AGGACATATGGTACTGGAGTGG 58.691 50.000 7.80 0.00 40.01 4.00
1481 1540 5.359194 AAAGGACATATGGTACTGGAGTG 57.641 43.478 7.80 0.00 40.91 3.51
1482 1541 5.962031 TGTAAAGGACATATGGTACTGGAGT 59.038 40.000 7.80 0.00 40.91 3.85
1483 1542 6.098409 ACTGTAAAGGACATATGGTACTGGAG 59.902 42.308 7.80 0.00 40.91 3.86
1484 1543 5.962031 ACTGTAAAGGACATATGGTACTGGA 59.038 40.000 7.80 0.00 40.91 3.86
1485 1544 6.235231 ACTGTAAAGGACATATGGTACTGG 57.765 41.667 7.80 2.70 40.91 4.00
1486 1545 6.538742 CCAACTGTAAAGGACATATGGTACTG 59.461 42.308 7.80 7.58 40.91 2.74
1609 1669 0.318955 AGTGCGCAATCAGGTTTTGC 60.319 50.000 14.00 0.00 44.68 3.68
1837 1901 4.377839 ACGAGTCAGGACATATTGTCTG 57.622 45.455 7.51 4.72 46.19 3.51
1860 1924 5.580998 AGACTAGAGTTGGGACATGTCTTA 58.419 41.667 24.50 11.60 39.30 2.10
1866 1930 3.630311 GGGGTAGACTAGAGTTGGGACAT 60.630 52.174 0.00 0.00 39.30 3.06
1869 1933 2.295143 AGGGGTAGACTAGAGTTGGGA 58.705 52.381 0.00 0.00 0.00 4.37
1896 1989 4.568956 CATAACACCACTGTGATGTCTCA 58.431 43.478 8.52 0.00 45.76 3.27
2486 2706 1.556911 TGATGTCAGGAGAAAGGGAGC 59.443 52.381 0.00 0.00 0.00 4.70
2525 2745 6.176014 AGTGGGGCTATAAACTCATAAGAC 57.824 41.667 0.00 0.00 0.00 3.01
2541 2761 3.909086 GACAGCACTGGAGTGGGGC 62.909 68.421 8.82 0.00 45.72 5.80
2578 2798 6.525629 GTGAAGAGTAGGTAATATGGTGCAT 58.474 40.000 0.00 0.00 0.00 3.96
2677 2897 9.520204 AAAAATGACTGACTTGTAGAACATTTG 57.480 29.630 0.00 0.00 36.69 2.32
2703 2923 0.461693 GGCCAGCTGCAAAACAACAA 60.462 50.000 8.66 0.00 43.89 2.83
2792 3012 8.561738 AAGAACTCAGAAACAACTAAGAACAA 57.438 30.769 0.00 0.00 0.00 2.83
2830 3050 8.783093 TGAGAAAAATTGACATCGTCTTACAAT 58.217 29.630 0.00 0.00 33.15 2.71
2833 3053 7.797819 AGTGAGAAAAATTGACATCGTCTTAC 58.202 34.615 0.00 0.00 33.15 2.34
2839 3059 4.388773 TCCGAGTGAGAAAAATTGACATCG 59.611 41.667 0.00 0.00 0.00 3.84
3000 3220 7.002250 TCATGAATACAAAGGGAAATGCAAA 57.998 32.000 0.00 0.00 0.00 3.68
3045 3265 5.091431 GCATTGCAAGTAACAGAGTTGATC 58.909 41.667 4.94 0.00 40.46 2.92
3136 3357 9.667107 CCTACATAGAAAGAAGTATCCACAAAA 57.333 33.333 0.00 0.00 0.00 2.44
3137 3358 8.265055 CCCTACATAGAAAGAAGTATCCACAAA 58.735 37.037 0.00 0.00 0.00 2.83
3138 3359 7.622081 TCCCTACATAGAAAGAAGTATCCACAA 59.378 37.037 0.00 0.00 0.00 3.33
3139 3360 7.130099 TCCCTACATAGAAAGAAGTATCCACA 58.870 38.462 0.00 0.00 0.00 4.17
3140 3361 7.598759 TCCCTACATAGAAAGAAGTATCCAC 57.401 40.000 0.00 0.00 0.00 4.02
3141 3362 7.290248 CCTTCCCTACATAGAAAGAAGTATCCA 59.710 40.741 0.00 0.00 31.01 3.41
3142 3363 7.256368 CCCTTCCCTACATAGAAAGAAGTATCC 60.256 44.444 0.00 0.00 31.01 2.59
3143 3364 7.672240 CCCTTCCCTACATAGAAAGAAGTATC 58.328 42.308 0.00 0.00 31.01 2.24
3144 3365 6.043358 GCCCTTCCCTACATAGAAAGAAGTAT 59.957 42.308 0.00 0.00 31.01 2.12
3145 3366 5.365895 GCCCTTCCCTACATAGAAAGAAGTA 59.634 44.000 0.00 0.00 31.01 2.24
3146 3367 4.164413 GCCCTTCCCTACATAGAAAGAAGT 59.836 45.833 0.00 0.00 31.01 3.01
3147 3368 4.410555 AGCCCTTCCCTACATAGAAAGAAG 59.589 45.833 0.00 0.00 0.00 2.85
3148 3369 4.164221 CAGCCCTTCCCTACATAGAAAGAA 59.836 45.833 3.79 0.00 0.00 2.52
3149 3370 3.711704 CAGCCCTTCCCTACATAGAAAGA 59.288 47.826 3.79 0.00 0.00 2.52
3150 3371 3.745797 GCAGCCCTTCCCTACATAGAAAG 60.746 52.174 0.00 0.00 0.00 2.62
3151 3372 2.172717 GCAGCCCTTCCCTACATAGAAA 59.827 50.000 0.00 0.00 0.00 2.52
3152 3373 1.768870 GCAGCCCTTCCCTACATAGAA 59.231 52.381 0.00 0.00 0.00 2.10
3153 3374 1.424638 GCAGCCCTTCCCTACATAGA 58.575 55.000 0.00 0.00 0.00 1.98
3154 3375 0.034059 CGCAGCCCTTCCCTACATAG 59.966 60.000 0.00 0.00 0.00 2.23
3155 3376 0.689745 ACGCAGCCCTTCCCTACATA 60.690 55.000 0.00 0.00 0.00 2.29
3156 3377 0.689745 TACGCAGCCCTTCCCTACAT 60.690 55.000 0.00 0.00 0.00 2.29
3157 3378 1.305465 TACGCAGCCCTTCCCTACA 60.305 57.895 0.00 0.00 0.00 2.74
3158 3379 1.143401 GTACGCAGCCCTTCCCTAC 59.857 63.158 0.00 0.00 0.00 3.18
3159 3380 0.905809 TTGTACGCAGCCCTTCCCTA 60.906 55.000 0.00 0.00 0.00 3.53
3160 3381 1.562672 ATTGTACGCAGCCCTTCCCT 61.563 55.000 0.00 0.00 0.00 4.20
3161 3382 0.179468 TATTGTACGCAGCCCTTCCC 59.821 55.000 0.00 0.00 0.00 3.97
3162 3383 1.138266 TCTATTGTACGCAGCCCTTCC 59.862 52.381 0.00 0.00 0.00 3.46
3163 3384 2.202566 GTCTATTGTACGCAGCCCTTC 58.797 52.381 0.00 0.00 0.00 3.46
3164 3385 1.134491 GGTCTATTGTACGCAGCCCTT 60.134 52.381 0.00 0.00 0.00 3.95
3165 3386 0.464452 GGTCTATTGTACGCAGCCCT 59.536 55.000 0.00 0.00 0.00 5.19
3166 3387 0.532196 GGGTCTATTGTACGCAGCCC 60.532 60.000 0.00 0.00 0.00 5.19
3167 3388 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3168 3389 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3169 3390 3.596214 ACTTTGGGTCTATTGTACGCAG 58.404 45.455 0.00 0.00 40.36 5.18
3170 3391 3.688694 ACTTTGGGTCTATTGTACGCA 57.311 42.857 0.00 0.00 37.94 5.24
3171 3392 4.752146 ACTACTTTGGGTCTATTGTACGC 58.248 43.478 0.00 0.00 0.00 4.42
3172 3393 5.032863 CGACTACTTTGGGTCTATTGTACG 58.967 45.833 0.00 0.00 0.00 3.67
3173 3394 5.126061 TCCGACTACTTTGGGTCTATTGTAC 59.874 44.000 0.00 0.00 0.00 2.90
3174 3395 5.126061 GTCCGACTACTTTGGGTCTATTGTA 59.874 44.000 0.00 0.00 0.00 2.41
3175 3396 4.081807 GTCCGACTACTTTGGGTCTATTGT 60.082 45.833 0.00 0.00 0.00 2.71
3176 3397 4.430908 GTCCGACTACTTTGGGTCTATTG 58.569 47.826 0.00 0.00 0.00 1.90
3177 3398 3.450096 GGTCCGACTACTTTGGGTCTATT 59.550 47.826 0.00 0.00 0.00 1.73
3178 3399 3.029570 GGTCCGACTACTTTGGGTCTAT 58.970 50.000 0.00 0.00 0.00 1.98
3179 3400 2.450476 GGTCCGACTACTTTGGGTCTA 58.550 52.381 0.00 0.00 0.00 2.59
3180 3401 1.264295 GGTCCGACTACTTTGGGTCT 58.736 55.000 0.00 0.00 0.00 3.85
3181 3402 0.248565 GGGTCCGACTACTTTGGGTC 59.751 60.000 0.00 0.00 0.00 4.46
3182 3403 0.178912 AGGGTCCGACTACTTTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
3183 3404 0.981943 AAGGGTCCGACTACTTTGGG 59.018 55.000 0.00 0.00 0.00 4.12
3184 3405 1.066358 GGAAGGGTCCGACTACTTTGG 60.066 57.143 9.39 0.00 33.05 3.28
3185 3406 1.066358 GGGAAGGGTCCGACTACTTTG 60.066 57.143 9.39 0.00 46.04 2.77
3186 3407 1.273759 GGGAAGGGTCCGACTACTTT 58.726 55.000 9.39 0.00 46.04 2.66
3187 3408 0.616964 GGGGAAGGGTCCGACTACTT 60.617 60.000 8.22 8.22 46.04 2.24
3188 3409 1.001376 GGGGAAGGGTCCGACTACT 59.999 63.158 0.00 0.00 46.04 2.57
3189 3410 3.626394 GGGGAAGGGTCCGACTAC 58.374 66.667 0.00 0.00 46.04 2.73
3196 3417 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
3212 3433 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3215 3436 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3216 3437 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3217 3438 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3218 3439 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3224 3445 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3225 3446 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3226 3447 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3227 3448 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3228 3449 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3238 3459 2.615240 CCACAAAATAAAAGGGCAGCCC 60.615 50.000 24.90 24.90 45.90 5.19
3239 3460 2.301583 TCCACAAAATAAAAGGGCAGCC 59.698 45.455 1.26 1.26 0.00 4.85
3240 3461 3.676291 TCCACAAAATAAAAGGGCAGC 57.324 42.857 0.00 0.00 0.00 5.25
3241 3462 6.530019 AGTATCCACAAAATAAAAGGGCAG 57.470 37.500 0.00 0.00 0.00 4.85
3242 3463 6.723977 AGAAGTATCCACAAAATAAAAGGGCA 59.276 34.615 0.00 0.00 0.00 5.36
3243 3464 7.170393 AGAAGTATCCACAAAATAAAAGGGC 57.830 36.000 0.00 0.00 0.00 5.19
3244 3465 9.639601 GAAAGAAGTATCCACAAAATAAAAGGG 57.360 33.333 0.00 0.00 0.00 3.95
3330 3551 3.527641 GCTAGCCTACAGAGCGGT 58.472 61.111 2.29 0.00 34.64 5.68
3603 3826 9.243105 ACTACAAGTTAATCAGTATTTGCCATT 57.757 29.630 0.00 0.00 0.00 3.16
3908 4133 6.986231 AGCAATTTAGGTTTGGAAAGAAACAG 59.014 34.615 0.00 0.00 37.53 3.16
3910 4135 7.786178 AAGCAATTTAGGTTTGGAAAGAAAC 57.214 32.000 0.00 0.00 35.45 2.78
4026 4252 4.654915 TGTTCTCTCATCATCCTGCAAAA 58.345 39.130 0.00 0.00 0.00 2.44
4087 4313 2.670414 GCTCTCAAGAAACAGACATCCG 59.330 50.000 0.00 0.00 0.00 4.18
4159 4385 5.357596 ACGGTATCTCTGAGTCTTTACCTTC 59.642 44.000 17.80 3.34 0.00 3.46
4181 4408 0.035439 ATCTAAGGTTGTGGGGCACG 60.035 55.000 0.00 0.00 37.14 5.34
4289 4519 0.909623 GGGGCTTGCCTACTAGAACA 59.090 55.000 11.71 0.00 0.00 3.18
4290 4520 1.205055 AGGGGCTTGCCTACTAGAAC 58.795 55.000 11.71 0.00 0.00 3.01
4292 4522 1.758123 GCTAGGGGCTTGCCTACTAGA 60.758 57.143 29.41 11.10 38.06 2.43
4293 4523 0.682292 GCTAGGGGCTTGCCTACTAG 59.318 60.000 25.05 25.05 38.06 2.57
4294 4524 2.836020 GCTAGGGGCTTGCCTACTA 58.164 57.895 11.71 12.50 38.06 1.82
4295 4525 3.648694 GCTAGGGGCTTGCCTACT 58.351 61.111 11.71 12.06 38.06 2.57
4346 4750 1.680249 GGAACCTCAAGGATCTGCACC 60.680 57.143 2.30 0.00 37.20 5.01
4490 4894 2.287849 CGATGCGATGACCACAGATAGT 60.288 50.000 0.00 0.00 0.00 2.12
4507 4911 1.089112 TCATGAACTTGCCTGCGATG 58.911 50.000 0.00 0.00 0.00 3.84
4523 4927 7.012327 CGACAACATCTACAATTTGGGTATCAT 59.988 37.037 0.78 0.00 0.00 2.45
4535 4939 2.984471 GAGAACGCGACAACATCTACAA 59.016 45.455 15.93 0.00 0.00 2.41
4583 4987 2.637872 CCCCACCTTTTCTACTCACAGA 59.362 50.000 0.00 0.00 0.00 3.41
4722 5241 2.046285 CATCCCCGGGACAAAGCAC 61.046 63.158 26.32 0.00 32.98 4.40
4743 5262 3.583086 TCAAGAAAGTAGGGAAGGTCTGG 59.417 47.826 0.00 0.00 0.00 3.86
4826 5345 6.032717 GCTGGAATTATCAAAAGAGCAGAAC 58.967 40.000 0.00 0.00 0.00 3.01
4899 5418 1.134907 CCTTTGGCTTGCATCATCCAC 60.135 52.381 0.00 0.00 0.00 4.02
4915 5434 1.077169 CTTTACTTCCCCTGGCCCTTT 59.923 52.381 0.00 0.00 0.00 3.11
4962 5481 2.942804 TGGACATCTTTGTTTGCTGGA 58.057 42.857 0.00 0.00 35.79 3.86
4964 5483 3.256383 TCCATGGACATCTTTGTTTGCTG 59.744 43.478 11.44 0.00 35.79 4.41
4965 5484 3.499338 TCCATGGACATCTTTGTTTGCT 58.501 40.909 11.44 0.00 35.79 3.91
4966 5485 3.841643 CTCCATGGACATCTTTGTTTGC 58.158 45.455 11.44 0.00 35.79 3.68
4967 5486 3.508793 AGCTCCATGGACATCTTTGTTTG 59.491 43.478 11.44 0.00 35.79 2.93
4968 5487 3.771216 AGCTCCATGGACATCTTTGTTT 58.229 40.909 11.44 0.00 35.79 2.83
4969 5488 3.446442 AGCTCCATGGACATCTTTGTT 57.554 42.857 11.44 0.00 35.79 2.83
4970 5489 3.446442 AAGCTCCATGGACATCTTTGT 57.554 42.857 11.44 0.00 39.32 2.83
4972 5491 4.154942 ACAAAAGCTCCATGGACATCTTT 58.845 39.130 11.44 16.45 0.00 2.52
4974 5493 3.446442 ACAAAAGCTCCATGGACATCT 57.554 42.857 11.44 5.45 0.00 2.90
4975 5494 5.048083 TGTTTACAAAAGCTCCATGGACATC 60.048 40.000 11.44 2.94 0.00 3.06
4976 5495 4.832266 TGTTTACAAAAGCTCCATGGACAT 59.168 37.500 11.44 0.00 0.00 3.06
4977 5496 4.211125 TGTTTACAAAAGCTCCATGGACA 58.789 39.130 11.44 0.00 0.00 4.02
4978 5497 4.846779 TGTTTACAAAAGCTCCATGGAC 57.153 40.909 11.44 8.29 0.00 4.02
4979 5498 5.596361 TCTTTGTTTACAAAAGCTCCATGGA 59.404 36.000 15.27 15.27 44.24 3.41
4980 5499 5.841810 TCTTTGTTTACAAAAGCTCCATGG 58.158 37.500 4.97 4.97 44.24 3.66
4981 5500 9.079833 CATATCTTTGTTTACAAAAGCTCCATG 57.920 33.333 9.13 0.00 44.24 3.66
4982 5501 7.761249 GCATATCTTTGTTTACAAAAGCTCCAT 59.239 33.333 9.13 0.00 44.24 3.41
4983 5502 7.090173 GCATATCTTTGTTTACAAAAGCTCCA 58.910 34.615 9.13 0.00 44.24 3.86
4984 5503 6.531594 GGCATATCTTTGTTTACAAAAGCTCC 59.468 38.462 9.13 3.49 44.24 4.70
4985 5504 6.531594 GGGCATATCTTTGTTTACAAAAGCTC 59.468 38.462 9.13 5.43 44.24 4.09
4986 5505 6.014669 TGGGCATATCTTTGTTTACAAAAGCT 60.015 34.615 9.13 0.00 44.24 3.74
4987 5506 6.162777 TGGGCATATCTTTGTTTACAAAAGC 58.837 36.000 9.13 8.07 44.24 3.51
4988 5507 7.278424 CCATGGGCATATCTTTGTTTACAAAAG 59.722 37.037 2.85 4.60 44.24 2.27
4989 5508 7.038729 TCCATGGGCATATCTTTGTTTACAAAA 60.039 33.333 13.02 2.27 44.24 2.44
4990 5509 6.438741 TCCATGGGCATATCTTTGTTTACAAA 59.561 34.615 13.02 7.72 42.90 2.83
4991 5510 5.954752 TCCATGGGCATATCTTTGTTTACAA 59.045 36.000 13.02 0.00 0.00 2.41
4992 5511 5.514169 TCCATGGGCATATCTTTGTTTACA 58.486 37.500 13.02 0.00 0.00 2.41
4993 5512 5.507985 GCTCCATGGGCATATCTTTGTTTAC 60.508 44.000 13.02 0.00 0.00 2.01
4994 5513 4.584325 GCTCCATGGGCATATCTTTGTTTA 59.416 41.667 13.02 0.00 0.00 2.01
5008 5527 3.430453 TGAAAAACTAAGGCTCCATGGG 58.570 45.455 13.02 3.69 0.00 4.00
5018 5537 5.241506 TGTGGCTGAATCCTGAAAAACTAAG 59.758 40.000 0.00 0.00 0.00 2.18
5057 5576 8.473358 TCGAAAACATTGATCTATACCCTCTA 57.527 34.615 0.00 0.00 0.00 2.43
5060 5579 5.992217 GCTCGAAAACATTGATCTATACCCT 59.008 40.000 0.00 0.00 0.00 4.34
5063 5582 6.073548 CCTGGCTCGAAAACATTGATCTATAC 60.074 42.308 0.00 0.00 0.00 1.47
5120 5639 7.387122 GGTTAGGGTTCAGTTTAGTCAAGTAAG 59.613 40.741 0.00 0.00 0.00 2.34
5160 5679 3.256631 ACAAAGATGCCGAGCAAAAATCT 59.743 39.130 2.68 0.00 43.62 2.40
5240 5759 4.116961 GGCACTTACTTGAACCCAAAAAC 58.883 43.478 0.00 0.00 0.00 2.43
5359 5878 2.286418 GCAGTCGTTGGTGTTTCTTCAG 60.286 50.000 0.00 0.00 0.00 3.02
5361 5880 1.668751 TGCAGTCGTTGGTGTTTCTTC 59.331 47.619 0.00 0.00 0.00 2.87
5364 5883 2.553079 TTTGCAGTCGTTGGTGTTTC 57.447 45.000 0.00 0.00 0.00 2.78
5385 5904 6.753744 CACGAATTACTGATTCTCATCACTGA 59.246 38.462 0.00 0.00 41.66 3.41
5408 5927 2.874849 CCGACAAATAATGTTGCCCAC 58.125 47.619 0.00 0.00 44.12 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.