Multiple sequence alignment - TraesCS1B01G158200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G158200 chr1B 100.000 2543 0 0 943 3485 268637891 268640433 0.000000e+00 4697
1 TraesCS1B01G158200 chr1B 100.000 696 0 0 1 696 268636949 268637644 0.000000e+00 1286
2 TraesCS1B01G158200 chr1B 100.000 564 0 0 3818 4381 268640766 268641329 0.000000e+00 1042
3 TraesCS1B01G158200 chr1B 98.649 222 2 1 1 222 626652243 626652023 4.110000e-105 392
4 TraesCS1B01G158200 chr1B 96.610 118 4 0 4264 4381 268800312 268800429 3.460000e-46 196
5 TraesCS1B01G158200 chr1D 96.760 2531 59 10 967 3485 193960101 193962620 0.000000e+00 4198
6 TraesCS1B01G158200 chr1D 88.565 481 41 8 223 693 193959545 193960021 4.920000e-159 571
7 TraesCS1B01G158200 chr1D 78.505 642 97 20 1453 2081 16257816 16258429 2.470000e-102 383
8 TraesCS1B01G158200 chr1D 97.500 120 3 0 4262 4381 193962853 193962972 5.740000e-49 206
9 TraesCS1B01G158200 chr1D 96.610 118 4 0 4264 4381 194136697 194136814 3.460000e-46 196
10 TraesCS1B01G158200 chr1D 88.793 116 5 5 3818 3930 193962741 193962851 7.640000e-28 135
11 TraesCS1B01G158200 chr1A 97.333 1350 25 4 2140 3485 241169479 241170821 0.000000e+00 2283
12 TraesCS1B01G158200 chr1A 97.283 1141 23 3 967 2100 241168348 241169487 0.000000e+00 1929
13 TraesCS1B01G158200 chr1A 87.526 489 40 8 217 693 241167789 241168268 2.980000e-151 545
14 TraesCS1B01G158200 chr1A 97.500 120 3 0 4262 4381 241171119 241171238 5.740000e-49 206
15 TraesCS1B01G158200 chr1A 97.500 120 3 0 4262 4381 241171889 241172008 5.740000e-49 206
16 TraesCS1B01G158200 chr1A 97.458 118 3 0 4264 4381 241317718 241317835 7.430000e-48 202
17 TraesCS1B01G158200 chr1A 91.228 114 2 4 3818 3930 241171011 241171117 9.820000e-32 148
18 TraesCS1B01G158200 chr1A 91.228 114 2 4 3818 3930 241171781 241171887 9.820000e-32 148
19 TraesCS1B01G158200 chr1A 97.619 84 2 0 4295 4378 241175055 241175138 1.270000e-30 145
20 TraesCS1B01G158200 chr1A 90.351 114 3 4 3818 3930 241172551 241172657 4.570000e-30 143
21 TraesCS1B01G158200 chr3B 95.482 332 14 1 3929 4259 123671953 123671622 3.000000e-146 529
22 TraesCS1B01G158200 chrUn 94.895 333 15 2 3929 4260 449512848 449513179 1.810000e-143 520
23 TraesCS1B01G158200 chrUn 74.861 1082 160 63 1455 2505 343361501 343362501 5.310000e-104 388
24 TraesCS1B01G158200 chr6B 94.880 332 16 1 3929 4260 480831916 480832246 6.500000e-143 518
25 TraesCS1B01G158200 chr6B 94.030 335 17 3 3929 4263 2480168 2479837 5.060000e-139 505
26 TraesCS1B01G158200 chr6B 99.091 220 2 0 1 220 555205254 555205473 3.180000e-106 396
27 TraesCS1B01G158200 chr4A 94.880 332 15 2 3929 4260 740134415 740134744 6.500000e-143 518
28 TraesCS1B01G158200 chr4A 94.048 336 15 5 3928 4260 626957131 626957464 5.060000e-139 505
29 TraesCS1B01G158200 chr4A 99.541 218 1 0 1 218 729294419 729294202 8.830000e-107 398
30 TraesCS1B01G158200 chr4A 78.234 657 95 24 1453 2089 661819792 661820420 1.150000e-100 377
31 TraesCS1B01G158200 chr7B 93.429 350 17 5 3912 4260 675843722 675844066 8.400000e-142 514
32 TraesCS1B01G158200 chr7B 95.899 317 12 1 3928 4243 36481133 36480817 3.020000e-141 512
33 TraesCS1B01G158200 chr7B 75.531 1083 167 57 1453 2505 697028258 697027244 4.020000e-120 442
34 TraesCS1B01G158200 chr7B 99.103 223 2 0 1 223 423167097 423166875 6.820000e-108 401
35 TraesCS1B01G158200 chr7B 78.440 654 97 22 1453 2090 693617837 693618462 1.910000e-103 387
36 TraesCS1B01G158200 chr7B 78.407 653 99 20 1453 2090 699177824 699178449 1.910000e-103 387
37 TraesCS1B01G158200 chr7B 76.408 657 114 25 1453 2090 694359713 694360347 2.540000e-82 316
38 TraesCS1B01G158200 chr7B 76.731 361 58 18 2152 2505 696141136 696141477 1.250000e-40 178
39 TraesCS1B01G158200 chr7B 77.316 313 53 12 2196 2505 697366931 697366634 7.540000e-38 169
40 TraesCS1B01G158200 chr5A 94.578 332 15 3 3929 4258 422856650 422856980 1.090000e-140 510
41 TraesCS1B01G158200 chr5A 99.541 218 1 0 1 218 554204731 554204514 8.830000e-107 398
42 TraesCS1B01G158200 chr4B 98.684 228 2 1 1 228 481232188 481232414 1.900000e-108 403
43 TraesCS1B01G158200 chr7A 99.543 219 1 0 1 219 732908127 732908345 2.450000e-107 399
44 TraesCS1B01G158200 chr7A 77.843 677 106 23 1448 2109 700204618 700205265 3.200000e-101 379
45 TraesCS1B01G158200 chr7A 74.238 361 61 15 2159 2505 699915827 699915485 5.950000e-24 122
46 TraesCS1B01G158200 chr2B 99.541 218 1 0 1 218 77770625 77770842 8.830000e-107 398
47 TraesCS1B01G158200 chr2A 97.807 228 4 1 1 228 755847731 755847957 4.110000e-105 392
48 TraesCS1B01G158200 chr6A 77.895 665 100 22 1453 2100 470903891 470904525 1.920000e-98 370
49 TraesCS1B01G158200 chr7D 77.434 647 105 22 1448 2081 79260452 79261070 9.020000e-92 348
50 TraesCS1B01G158200 chr7D 77.008 361 59 17 2152 2505 600237009 600236666 7.480000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G158200 chr1B 268636949 268641329 4380 False 2341.666667 4697 100.000000 1 4381 3 chr1B.!!$F2 4380
1 TraesCS1B01G158200 chr1D 193959545 193962972 3427 False 1277.500000 4198 92.904500 223 4381 4 chr1D.!!$F3 4158
2 TraesCS1B01G158200 chr1D 16257816 16258429 613 False 383.000000 383 78.505000 1453 2081 1 chr1D.!!$F1 628
3 TraesCS1B01G158200 chr1A 241167789 241175138 7349 False 639.222222 2283 94.174222 217 4381 9 chr1A.!!$F2 4164
4 TraesCS1B01G158200 chrUn 343361501 343362501 1000 False 388.000000 388 74.861000 1455 2505 1 chrUn.!!$F1 1050
5 TraesCS1B01G158200 chr4A 661819792 661820420 628 False 377.000000 377 78.234000 1453 2089 1 chr4A.!!$F2 636
6 TraesCS1B01G158200 chr7B 697027244 697028258 1014 True 442.000000 442 75.531000 1453 2505 1 chr7B.!!$R3 1052
7 TraesCS1B01G158200 chr7B 693617837 693618462 625 False 387.000000 387 78.440000 1453 2090 1 chr7B.!!$F2 637
8 TraesCS1B01G158200 chr7B 699177824 699178449 625 False 387.000000 387 78.407000 1453 2090 1 chr7B.!!$F5 637
9 TraesCS1B01G158200 chr7B 694359713 694360347 634 False 316.000000 316 76.408000 1453 2090 1 chr7B.!!$F3 637
10 TraesCS1B01G158200 chr7A 700204618 700205265 647 False 379.000000 379 77.843000 1448 2109 1 chr7A.!!$F1 661
11 TraesCS1B01G158200 chr6A 470903891 470904525 634 False 370.000000 370 77.895000 1453 2100 1 chr6A.!!$F1 647
12 TraesCS1B01G158200 chr7D 79260452 79261070 618 False 348.000000 348 77.434000 1448 2081 1 chr7D.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.034059 CGGGCTCTGTGTGAGTCTTT 59.966 55.0 0.00 0.00 46.12 2.52 F
175 176 0.169672 GATGGCCGTATGCATCATGC 59.830 55.0 0.19 1.35 45.29 4.06 F
176 177 0.251033 ATGGCCGTATGCATCATGCT 60.251 50.0 11.84 0.00 45.31 3.79 F
382 396 0.254638 TAGAAGGGGAGAGGGGAGGA 60.255 60.0 0.00 0.00 0.00 3.71 F
2141 2242 0.118144 AGGGGGAGGAGGATATCTGC 59.882 60.0 2.05 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1829 4.815846 ACATTGCACCTCCAAACAATTTTC 59.184 37.500 0.00 0.0 30.54 2.29 R
2122 2223 0.118144 GCAGATATCCTCCTCCCCCT 59.882 60.000 0.00 0.0 0.00 4.79 R
2127 2228 1.214062 CGGCGCAGATATCCTCCTC 59.786 63.158 10.83 0.0 0.00 3.71 R
2302 2452 1.509548 AAGGTAGCACAAGCCCCCAT 61.510 55.000 0.00 0.0 43.56 4.00 R
4033 4408 0.103208 CTCGGTGAGCTCGCCTTTAT 59.897 55.000 36.59 0.0 44.11 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.562506 GTTTACCTGTCTATTTTGGAGCC 57.437 43.478 0.00 0.00 0.00 4.70
23 24 4.919774 TTACCTGTCTATTTTGGAGCCA 57.080 40.909 0.00 0.00 0.00 4.75
24 25 3.806949 ACCTGTCTATTTTGGAGCCAA 57.193 42.857 0.00 0.00 0.00 4.52
25 26 4.112634 ACCTGTCTATTTTGGAGCCAAA 57.887 40.909 10.49 10.49 43.23 3.28
26 27 3.826729 ACCTGTCTATTTTGGAGCCAAAC 59.173 43.478 13.90 4.37 44.39 2.93
27 28 3.119849 CCTGTCTATTTTGGAGCCAAACG 60.120 47.826 13.90 6.51 44.39 3.60
28 29 2.817258 TGTCTATTTTGGAGCCAAACGG 59.183 45.455 13.90 7.67 44.39 4.44
37 38 3.354678 GCCAAACGGCTGTGATGT 58.645 55.556 0.00 0.00 46.85 3.06
38 39 2.550487 GCCAAACGGCTGTGATGTA 58.450 52.632 0.00 0.00 46.85 2.29
39 40 1.094785 GCCAAACGGCTGTGATGTAT 58.905 50.000 0.00 0.00 46.85 2.29
40 41 2.285083 GCCAAACGGCTGTGATGTATA 58.715 47.619 0.00 0.00 46.85 1.47
41 42 2.680841 GCCAAACGGCTGTGATGTATAA 59.319 45.455 0.00 0.00 46.85 0.98
42 43 3.242739 GCCAAACGGCTGTGATGTATAAG 60.243 47.826 0.00 0.00 46.85 1.73
43 44 3.938963 CCAAACGGCTGTGATGTATAAGT 59.061 43.478 0.00 0.00 0.00 2.24
44 45 4.201812 CCAAACGGCTGTGATGTATAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
45 46 2.550978 ACGGCTGTGATGTATAAGTGC 58.449 47.619 0.00 0.00 0.00 4.40
46 47 2.168521 ACGGCTGTGATGTATAAGTGCT 59.831 45.455 0.00 0.00 0.00 4.40
47 48 3.198068 CGGCTGTGATGTATAAGTGCTT 58.802 45.455 0.00 0.00 0.00 3.91
48 49 3.623060 CGGCTGTGATGTATAAGTGCTTT 59.377 43.478 0.00 0.00 0.00 3.51
49 50 4.494690 CGGCTGTGATGTATAAGTGCTTTG 60.495 45.833 0.00 0.00 0.00 2.77
50 51 4.201950 GGCTGTGATGTATAAGTGCTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
51 52 4.731773 GCTGTGATGTATAAGTGCTTTGGC 60.732 45.833 0.00 0.00 39.26 4.52
52 53 4.588899 TGTGATGTATAAGTGCTTTGGCT 58.411 39.130 0.00 0.00 39.59 4.75
53 54 5.739959 TGTGATGTATAAGTGCTTTGGCTA 58.260 37.500 0.00 0.00 39.59 3.93
54 55 5.817296 TGTGATGTATAAGTGCTTTGGCTAG 59.183 40.000 0.00 0.00 39.59 3.42
55 56 4.816385 TGATGTATAAGTGCTTTGGCTAGC 59.184 41.667 6.04 6.04 41.59 3.42
56 57 4.487714 TGTATAAGTGCTTTGGCTAGCT 57.512 40.909 15.72 0.00 41.76 3.32
57 58 4.843728 TGTATAAGTGCTTTGGCTAGCTT 58.156 39.130 15.72 0.47 41.76 3.74
58 59 4.635765 TGTATAAGTGCTTTGGCTAGCTTG 59.364 41.667 15.72 3.73 41.76 4.01
59 60 1.986882 AAGTGCTTTGGCTAGCTTGT 58.013 45.000 15.72 0.00 41.76 3.16
60 61 1.242076 AGTGCTTTGGCTAGCTTGTG 58.758 50.000 15.72 4.44 41.76 3.33
61 62 0.954452 GTGCTTTGGCTAGCTTGTGT 59.046 50.000 15.72 0.00 41.76 3.72
62 63 2.151202 GTGCTTTGGCTAGCTTGTGTA 58.849 47.619 15.72 0.04 41.76 2.90
63 64 2.749621 GTGCTTTGGCTAGCTTGTGTAT 59.250 45.455 15.72 0.00 41.76 2.29
64 65 3.009723 TGCTTTGGCTAGCTTGTGTATC 58.990 45.455 15.72 0.00 41.76 2.24
65 66 3.274288 GCTTTGGCTAGCTTGTGTATCT 58.726 45.455 15.72 0.00 38.15 1.98
66 67 4.081142 TGCTTTGGCTAGCTTGTGTATCTA 60.081 41.667 15.72 0.00 41.76 1.98
67 68 4.509600 GCTTTGGCTAGCTTGTGTATCTAG 59.490 45.833 15.72 0.00 38.15 2.43
71 72 4.329462 GCTAGCTTGTGTATCTAGCCTT 57.671 45.455 7.70 0.00 45.70 4.35
72 73 4.303282 GCTAGCTTGTGTATCTAGCCTTC 58.697 47.826 7.70 0.00 45.70 3.46
73 74 3.444703 AGCTTGTGTATCTAGCCTTCG 57.555 47.619 0.00 0.00 43.81 3.79
74 75 2.101582 AGCTTGTGTATCTAGCCTTCGG 59.898 50.000 0.00 0.00 43.81 4.30
75 76 2.803492 GCTTGTGTATCTAGCCTTCGGG 60.803 54.545 0.00 0.00 38.58 5.14
85 86 3.059982 CCTTCGGGCTCTGTGTGA 58.940 61.111 0.00 0.00 0.00 3.58
86 87 1.079543 CCTTCGGGCTCTGTGTGAG 60.080 63.158 0.00 0.00 45.33 3.51
87 88 1.668294 CTTCGGGCTCTGTGTGAGT 59.332 57.895 0.00 0.00 44.41 3.41
88 89 0.389166 CTTCGGGCTCTGTGTGAGTC 60.389 60.000 0.00 0.00 46.16 3.36
89 90 0.827925 TTCGGGCTCTGTGTGAGTCT 60.828 55.000 0.00 0.00 46.12 3.24
90 91 0.827925 TCGGGCTCTGTGTGAGTCTT 60.828 55.000 0.00 0.00 46.12 3.01
91 92 0.034059 CGGGCTCTGTGTGAGTCTTT 59.966 55.000 0.00 0.00 46.12 2.52
92 93 1.541233 CGGGCTCTGTGTGAGTCTTTT 60.541 52.381 0.00 0.00 46.12 2.27
93 94 2.147150 GGGCTCTGTGTGAGTCTTTTC 58.853 52.381 0.00 0.00 46.12 2.29
94 95 2.224402 GGGCTCTGTGTGAGTCTTTTCT 60.224 50.000 0.00 0.00 46.12 2.52
95 96 3.471680 GGCTCTGTGTGAGTCTTTTCTT 58.528 45.455 0.00 0.00 43.68 2.52
96 97 4.503296 GGGCTCTGTGTGAGTCTTTTCTTA 60.503 45.833 0.00 0.00 46.12 2.10
97 98 4.449405 GGCTCTGTGTGAGTCTTTTCTTAC 59.551 45.833 0.00 0.00 43.68 2.34
98 99 5.293560 GCTCTGTGTGAGTCTTTTCTTACT 58.706 41.667 0.00 0.00 44.41 2.24
99 100 5.755861 GCTCTGTGTGAGTCTTTTCTTACTT 59.244 40.000 0.00 0.00 44.41 2.24
100 101 6.258947 GCTCTGTGTGAGTCTTTTCTTACTTT 59.741 38.462 0.00 0.00 44.41 2.66
101 102 7.201652 GCTCTGTGTGAGTCTTTTCTTACTTTT 60.202 37.037 0.00 0.00 44.41 2.27
102 103 8.197988 TCTGTGTGAGTCTTTTCTTACTTTTC 57.802 34.615 0.00 0.00 0.00 2.29
103 104 8.041323 TCTGTGTGAGTCTTTTCTTACTTTTCT 58.959 33.333 0.00 0.00 0.00 2.52
104 105 8.561738 TGTGTGAGTCTTTTCTTACTTTTCTT 57.438 30.769 0.00 0.00 0.00 2.52
105 106 8.450964 TGTGTGAGTCTTTTCTTACTTTTCTTG 58.549 33.333 0.00 0.00 0.00 3.02
106 107 8.451748 GTGTGAGTCTTTTCTTACTTTTCTTGT 58.548 33.333 0.00 0.00 0.00 3.16
107 108 9.010029 TGTGAGTCTTTTCTTACTTTTCTTGTT 57.990 29.630 0.00 0.00 0.00 2.83
108 109 9.278734 GTGAGTCTTTTCTTACTTTTCTTGTTG 57.721 33.333 0.00 0.00 0.00 3.33
109 110 9.226606 TGAGTCTTTTCTTACTTTTCTTGTTGA 57.773 29.630 0.00 0.00 0.00 3.18
110 111 9.491934 GAGTCTTTTCTTACTTTTCTTGTTGAC 57.508 33.333 0.00 0.00 0.00 3.18
111 112 9.010029 AGTCTTTTCTTACTTTTCTTGTTGACA 57.990 29.630 0.00 0.00 0.00 3.58
112 113 9.620660 GTCTTTTCTTACTTTTCTTGTTGACAA 57.379 29.630 0.00 0.00 0.00 3.18
113 114 9.620660 TCTTTTCTTACTTTTCTTGTTGACAAC 57.379 29.630 11.54 11.54 0.00 3.32
114 115 8.751302 TTTTCTTACTTTTCTTGTTGACAACC 57.249 30.769 15.59 0.00 0.00 3.77
115 116 7.696992 TTCTTACTTTTCTTGTTGACAACCT 57.303 32.000 15.59 0.00 0.00 3.50
116 117 7.696992 TCTTACTTTTCTTGTTGACAACCTT 57.303 32.000 15.59 0.00 0.00 3.50
117 118 7.535139 TCTTACTTTTCTTGTTGACAACCTTG 58.465 34.615 15.59 6.01 0.00 3.61
118 119 5.975693 ACTTTTCTTGTTGACAACCTTGA 57.024 34.783 15.59 8.12 0.00 3.02
119 120 5.954335 ACTTTTCTTGTTGACAACCTTGAG 58.046 37.500 15.59 8.41 0.00 3.02
120 121 5.710099 ACTTTTCTTGTTGACAACCTTGAGA 59.290 36.000 15.59 10.37 0.00 3.27
121 122 5.560966 TTTCTTGTTGACAACCTTGAGAC 57.439 39.130 15.59 0.00 0.00 3.36
122 123 4.487714 TCTTGTTGACAACCTTGAGACT 57.512 40.909 15.59 0.00 0.00 3.24
123 124 4.843728 TCTTGTTGACAACCTTGAGACTT 58.156 39.130 15.59 0.00 0.00 3.01
124 125 4.635765 TCTTGTTGACAACCTTGAGACTTG 59.364 41.667 15.59 0.00 0.00 3.16
125 126 3.278574 TGTTGACAACCTTGAGACTTGG 58.721 45.455 15.59 0.00 0.00 3.61
126 127 3.054728 TGTTGACAACCTTGAGACTTGGA 60.055 43.478 15.59 0.00 0.00 3.53
127 128 3.475566 TGACAACCTTGAGACTTGGAG 57.524 47.619 0.00 0.00 0.00 3.86
128 129 3.038280 TGACAACCTTGAGACTTGGAGA 58.962 45.455 0.00 0.00 0.00 3.71
129 130 3.181465 TGACAACCTTGAGACTTGGAGAC 60.181 47.826 0.00 0.00 0.00 3.36
130 131 3.041946 ACAACCTTGAGACTTGGAGACT 58.958 45.455 0.00 0.00 0.00 3.24
131 132 3.456277 ACAACCTTGAGACTTGGAGACTT 59.544 43.478 0.00 0.00 0.00 3.01
132 133 4.080299 ACAACCTTGAGACTTGGAGACTTT 60.080 41.667 0.00 0.00 0.00 2.66
133 134 4.078639 ACCTTGAGACTTGGAGACTTTG 57.921 45.455 0.00 0.00 0.00 2.77
134 135 3.456277 ACCTTGAGACTTGGAGACTTTGT 59.544 43.478 0.00 0.00 0.00 2.83
135 136 3.812053 CCTTGAGACTTGGAGACTTTGTG 59.188 47.826 0.00 0.00 0.00 3.33
136 137 3.475566 TGAGACTTGGAGACTTTGTGG 57.524 47.619 0.00 0.00 0.00 4.17
137 138 3.038280 TGAGACTTGGAGACTTTGTGGA 58.962 45.455 0.00 0.00 0.00 4.02
138 139 3.181465 TGAGACTTGGAGACTTTGTGGAC 60.181 47.826 0.00 0.00 0.00 4.02
139 140 3.041946 AGACTTGGAGACTTTGTGGACT 58.958 45.455 0.00 0.00 0.00 3.85
140 141 4.223953 AGACTTGGAGACTTTGTGGACTA 58.776 43.478 0.00 0.00 0.00 2.59
141 142 4.841246 AGACTTGGAGACTTTGTGGACTAT 59.159 41.667 0.00 0.00 0.00 2.12
142 143 5.308237 AGACTTGGAGACTTTGTGGACTATT 59.692 40.000 0.00 0.00 0.00 1.73
143 144 5.941788 ACTTGGAGACTTTGTGGACTATTT 58.058 37.500 0.00 0.00 0.00 1.40
144 145 6.365520 ACTTGGAGACTTTGTGGACTATTTT 58.634 36.000 0.00 0.00 0.00 1.82
145 146 7.514721 ACTTGGAGACTTTGTGGACTATTTTA 58.485 34.615 0.00 0.00 0.00 1.52
146 147 8.164070 ACTTGGAGACTTTGTGGACTATTTTAT 58.836 33.333 0.00 0.00 0.00 1.40
147 148 7.921786 TGGAGACTTTGTGGACTATTTTATG 57.078 36.000 0.00 0.00 0.00 1.90
148 149 6.374333 TGGAGACTTTGTGGACTATTTTATGC 59.626 38.462 0.00 0.00 0.00 3.14
149 150 6.599638 GGAGACTTTGTGGACTATTTTATGCT 59.400 38.462 0.00 0.00 0.00 3.79
150 151 7.121315 GGAGACTTTGTGGACTATTTTATGCTT 59.879 37.037 0.00 0.00 0.00 3.91
151 152 9.162764 GAGACTTTGTGGACTATTTTATGCTTA 57.837 33.333 0.00 0.00 0.00 3.09
152 153 9.515226 AGACTTTGTGGACTATTTTATGCTTAA 57.485 29.630 0.00 0.00 0.00 1.85
163 164 8.730680 ACTATTTTATGCTTAATAAGATGGCCG 58.269 33.333 3.88 0.00 30.98 6.13
164 165 6.952773 TTTTATGCTTAATAAGATGGCCGT 57.047 33.333 0.00 0.00 32.30 5.68
165 166 8.630054 ATTTTATGCTTAATAAGATGGCCGTA 57.370 30.769 3.88 0.00 32.30 4.02
166 167 8.630054 TTTTATGCTTAATAAGATGGCCGTAT 57.370 30.769 3.88 0.00 32.30 3.06
167 168 7.609760 TTATGCTTAATAAGATGGCCGTATG 57.390 36.000 3.88 0.00 0.00 2.39
168 169 3.751175 TGCTTAATAAGATGGCCGTATGC 59.249 43.478 3.88 0.00 40.16 3.14
169 170 3.751175 GCTTAATAAGATGGCCGTATGCA 59.249 43.478 3.88 0.00 43.89 3.96
170 171 4.396166 GCTTAATAAGATGGCCGTATGCAT 59.604 41.667 3.79 3.79 43.89 3.96
171 172 5.447818 GCTTAATAAGATGGCCGTATGCATC 60.448 44.000 0.19 0.00 43.89 3.91
172 173 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
173 174 2.574006 AAGATGGCCGTATGCATCAT 57.426 45.000 0.19 0.00 43.89 2.45
174 175 1.817357 AGATGGCCGTATGCATCATG 58.183 50.000 0.19 0.00 43.89 3.07
175 176 0.169672 GATGGCCGTATGCATCATGC 59.830 55.000 0.19 1.35 45.29 4.06
176 177 0.251033 ATGGCCGTATGCATCATGCT 60.251 50.000 11.84 0.00 45.31 3.79
177 178 1.167781 TGGCCGTATGCATCATGCTG 61.168 55.000 11.84 0.00 45.31 4.41
178 179 0.886043 GGCCGTATGCATCATGCTGA 60.886 55.000 11.84 0.00 45.31 4.26
179 180 1.162698 GCCGTATGCATCATGCTGAT 58.837 50.000 11.84 0.00 45.31 2.90
190 191 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
192 193 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
194 195 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
195 196 3.764160 GATGCAGAGGCCGGGGAAG 62.764 68.421 2.18 0.00 40.13 3.46
300 305 6.519382 AGATGCGACATTCAATGAATCTCTA 58.481 36.000 5.36 0.00 28.87 2.43
377 391 2.192263 GGCATATAGAAGGGGAGAGGG 58.808 57.143 0.00 0.00 0.00 4.30
382 396 0.254638 TAGAAGGGGAGAGGGGAGGA 60.255 60.000 0.00 0.00 0.00 3.71
385 399 1.465189 AAGGGGAGAGGGGAGGACTT 61.465 60.000 0.00 0.00 0.00 3.01
436 451 1.823470 TTGCACACTGTCACCCTGC 60.823 57.895 0.00 0.00 0.00 4.85
437 452 2.980233 GCACACTGTCACCCTGCC 60.980 66.667 0.00 0.00 0.00 4.85
515 530 0.459237 CGGTGAGCTCCAGCACTAAG 60.459 60.000 12.15 0.00 45.16 2.18
663 678 8.749354 GGAAATTTTACTTTATCCATGGTCTGT 58.251 33.333 12.58 7.62 0.00 3.41
679 694 4.253685 GGTCTGTGATGAAAAAGATCGGA 58.746 43.478 0.00 0.00 0.00 4.55
680 695 4.331168 GGTCTGTGATGAAAAAGATCGGAG 59.669 45.833 0.00 0.00 0.00 4.63
689 704 6.202516 TGAAAAAGATCGGAGTTTTTGTGT 57.797 33.333 14.79 0.00 36.28 3.72
693 708 3.139077 AGATCGGAGTTTTTGTGTGTCC 58.861 45.455 0.00 0.00 0.00 4.02
965 980 5.918426 TGCATTCATAAGCTTTCCATTGA 57.082 34.783 3.20 0.00 0.00 2.57
966 981 5.653507 TGCATTCATAAGCTTTCCATTGAC 58.346 37.500 3.20 0.00 0.00 3.18
967 982 5.045872 GCATTCATAAGCTTTCCATTGACC 58.954 41.667 3.20 0.00 0.00 4.02
968 983 5.394443 GCATTCATAAGCTTTCCATTGACCA 60.394 40.000 3.20 0.00 0.00 4.02
969 984 6.684613 GCATTCATAAGCTTTCCATTGACCAT 60.685 38.462 3.20 0.00 0.00 3.55
970 985 6.855763 TTCATAAGCTTTCCATTGACCATT 57.144 33.333 3.20 0.00 0.00 3.16
983 998 1.879380 TGACCATTTCTTTGACAGCGG 59.121 47.619 0.00 0.00 0.00 5.52
1006 1021 2.437180 CGGCAGCAGCAATGGAGA 60.437 61.111 2.65 0.00 44.61 3.71
1673 1699 4.582656 TCAAAATCCTCACACGAAACCAAT 59.417 37.500 0.00 0.00 0.00 3.16
1790 1829 3.565482 CCCCAAGATGAACACGATATTGG 59.435 47.826 0.00 0.00 40.45 3.16
1825 1864 3.891366 AGGTGCAATGTTTACTTCTTGCT 59.109 39.130 7.52 0.00 43.33 3.91
1898 1941 6.744112 TCCACTTTGAAACCAATGTATGAAC 58.256 36.000 0.00 0.00 32.71 3.18
1985 2029 7.087409 TGATTTTGGCACATGTAGAAGTATG 57.913 36.000 0.00 0.00 39.30 2.39
2050 2100 4.771590 TCTTGGCAGATTGAATGTGAAC 57.228 40.909 6.49 0.00 0.00 3.18
2110 2211 2.664851 CGCCTGCGTCACCAGAAA 60.665 61.111 2.83 0.00 34.77 2.52
2111 2212 2.946762 GCCTGCGTCACCAGAAAC 59.053 61.111 0.00 0.00 34.77 2.78
2112 2213 2.617274 GCCTGCGTCACCAGAAACC 61.617 63.158 0.00 0.00 34.77 3.27
2113 2214 1.227823 CCTGCGTCACCAGAAACCA 60.228 57.895 0.00 0.00 34.77 3.67
2114 2215 0.817634 CCTGCGTCACCAGAAACCAA 60.818 55.000 0.00 0.00 34.77 3.67
2115 2216 0.588252 CTGCGTCACCAGAAACCAAG 59.412 55.000 0.00 0.00 34.77 3.61
2116 2217 0.817634 TGCGTCACCAGAAACCAAGG 60.818 55.000 0.00 0.00 0.00 3.61
2117 2218 0.534203 GCGTCACCAGAAACCAAGGA 60.534 55.000 0.00 0.00 0.00 3.36
2118 2219 1.512926 CGTCACCAGAAACCAAGGAG 58.487 55.000 0.00 0.00 0.00 3.69
2119 2220 1.070134 CGTCACCAGAAACCAAGGAGA 59.930 52.381 0.00 0.00 0.00 3.71
2120 2221 2.289694 CGTCACCAGAAACCAAGGAGAT 60.290 50.000 0.00 0.00 0.00 2.75
2121 2222 3.056107 CGTCACCAGAAACCAAGGAGATA 60.056 47.826 0.00 0.00 0.00 1.98
2122 2223 4.562757 CGTCACCAGAAACCAAGGAGATAA 60.563 45.833 0.00 0.00 0.00 1.75
2123 2224 4.938226 GTCACCAGAAACCAAGGAGATAAG 59.062 45.833 0.00 0.00 0.00 1.73
2124 2225 4.019321 TCACCAGAAACCAAGGAGATAAGG 60.019 45.833 0.00 0.00 0.00 2.69
2125 2226 3.267031 ACCAGAAACCAAGGAGATAAGGG 59.733 47.826 0.00 0.00 0.00 3.95
2126 2227 3.372025 CCAGAAACCAAGGAGATAAGGGG 60.372 52.174 0.00 0.00 0.00 4.79
2127 2228 2.853077 AGAAACCAAGGAGATAAGGGGG 59.147 50.000 0.00 0.00 0.00 5.40
2128 2229 2.680439 AACCAAGGAGATAAGGGGGA 57.320 50.000 0.00 0.00 0.00 4.81
2129 2230 2.198334 ACCAAGGAGATAAGGGGGAG 57.802 55.000 0.00 0.00 0.00 4.30
2130 2231 1.345526 ACCAAGGAGATAAGGGGGAGG 60.346 57.143 0.00 0.00 0.00 4.30
2131 2232 1.061346 CCAAGGAGATAAGGGGGAGGA 60.061 57.143 0.00 0.00 0.00 3.71
2132 2233 2.334023 CAAGGAGATAAGGGGGAGGAG 58.666 57.143 0.00 0.00 0.00 3.69
2133 2234 0.871024 AGGAGATAAGGGGGAGGAGG 59.129 60.000 0.00 0.00 0.00 4.30
2134 2235 0.868186 GGAGATAAGGGGGAGGAGGA 59.132 60.000 0.00 0.00 0.00 3.71
2135 2236 1.439143 GGAGATAAGGGGGAGGAGGAT 59.561 57.143 0.00 0.00 0.00 3.24
2136 2237 2.660556 GGAGATAAGGGGGAGGAGGATA 59.339 54.545 0.00 0.00 0.00 2.59
2137 2238 3.276307 GGAGATAAGGGGGAGGAGGATAT 59.724 52.174 0.00 0.00 0.00 1.63
2138 2239 4.552674 GAGATAAGGGGGAGGAGGATATC 58.447 52.174 0.00 0.00 0.00 1.63
2139 2240 4.207517 AGATAAGGGGGAGGAGGATATCT 58.792 47.826 2.05 0.00 0.00 1.98
2140 2241 2.731339 AAGGGGGAGGAGGATATCTG 57.269 55.000 2.05 0.00 0.00 2.90
2141 2242 0.118144 AGGGGGAGGAGGATATCTGC 59.882 60.000 2.05 0.00 0.00 4.26
2142 2243 1.261238 GGGGGAGGAGGATATCTGCG 61.261 65.000 2.05 0.00 38.98 5.18
2143 2244 1.594310 GGGAGGAGGATATCTGCGC 59.406 63.158 0.00 0.00 38.98 6.09
2144 2245 1.594310 GGAGGAGGATATCTGCGCC 59.406 63.158 4.18 2.15 45.10 6.53
2145 2246 1.214062 GAGGAGGATATCTGCGCCG 59.786 63.158 4.18 0.00 37.75 6.46
2146 2247 2.219325 GAGGAGGATATCTGCGCCGG 62.219 65.000 4.18 0.00 37.75 6.13
2147 2248 2.433318 GAGGATATCTGCGCCGGC 60.433 66.667 19.07 19.07 40.52 6.13
2303 2453 4.457496 CGCCACGCCACTGGAGAT 62.457 66.667 5.72 0.00 33.08 2.75
2385 2544 4.833478 ATCACTTGCCATAGTCTCAACT 57.167 40.909 0.00 0.00 39.66 3.16
2386 2545 4.193826 TCACTTGCCATAGTCTCAACTC 57.806 45.455 0.00 0.00 36.92 3.01
2387 2546 3.834813 TCACTTGCCATAGTCTCAACTCT 59.165 43.478 0.00 0.00 36.92 3.24
2388 2547 4.081972 TCACTTGCCATAGTCTCAACTCTC 60.082 45.833 0.00 0.00 36.92 3.20
2389 2548 3.834813 ACTTGCCATAGTCTCAACTCTCA 59.165 43.478 0.00 0.00 36.92 3.27
2390 2549 4.284490 ACTTGCCATAGTCTCAACTCTCAA 59.716 41.667 0.00 0.00 36.92 3.02
2404 2563 9.909644 TCTCAACTCTCAAGTAGTTAAATACAC 57.090 33.333 14.90 0.00 35.44 2.90
2613 2773 8.926710 CGAGTTCTTTATGTATTCAGTCTTTGT 58.073 33.333 0.00 0.00 0.00 2.83
2629 2789 5.127031 AGTCTTTGTATTGTGCACCTTTTGT 59.873 36.000 15.69 0.00 0.00 2.83
3043 3207 5.411977 TCCGCCACGAAAGATACAAAATTTA 59.588 36.000 0.00 0.00 0.00 1.40
3328 3492 0.246635 TTGCCGACTCTAGACAAGGC 59.753 55.000 16.55 16.55 44.38 4.35
3914 4080 6.806388 AGCTGAAGCCCAAAAATTATTTTG 57.194 33.333 3.51 6.98 44.98 2.44
3968 4343 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3969 4344 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3970 4345 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
3985 4360 1.328680 CAGAACGATGCATACAGCCAC 59.671 52.381 0.00 0.00 44.83 5.01
3986 4361 0.657840 GAACGATGCATACAGCCACC 59.342 55.000 0.00 0.00 44.83 4.61
3988 4363 0.179073 ACGATGCATACAGCCACCTC 60.179 55.000 0.00 0.00 44.83 3.85
3990 4365 1.743431 CGATGCATACAGCCACCTCAA 60.743 52.381 0.00 0.00 44.83 3.02
3992 4367 3.743521 GATGCATACAGCCACCTCAATA 58.256 45.455 0.00 0.00 44.83 1.90
3994 4369 3.961849 TGCATACAGCCACCTCAATAAA 58.038 40.909 0.00 0.00 44.83 1.40
3997 4372 6.125719 TGCATACAGCCACCTCAATAAATAA 58.874 36.000 0.00 0.00 44.83 1.40
3998 4373 6.605194 TGCATACAGCCACCTCAATAAATAAA 59.395 34.615 0.00 0.00 44.83 1.40
3999 4374 7.123397 TGCATACAGCCACCTCAATAAATAAAA 59.877 33.333 0.00 0.00 44.83 1.52
4000 4375 8.143835 GCATACAGCCACCTCAATAAATAAAAT 58.856 33.333 0.00 0.00 37.23 1.82
4003 4378 8.237811 ACAGCCACCTCAATAAATAAAATAGG 57.762 34.615 0.00 0.00 0.00 2.57
4004 4379 7.839200 ACAGCCACCTCAATAAATAAAATAGGT 59.161 33.333 0.00 0.00 36.31 3.08
4005 4380 8.695456 CAGCCACCTCAATAAATAAAATAGGTT 58.305 33.333 0.00 0.00 33.67 3.50
4006 4381 8.914011 AGCCACCTCAATAAATAAAATAGGTTC 58.086 33.333 0.00 0.00 33.67 3.62
4007 4382 8.691797 GCCACCTCAATAAATAAAATAGGTTCA 58.308 33.333 0.00 0.00 33.67 3.18
4022 4397 9.498176 AAAATAGGTTCAACAAAGTCGTATAGT 57.502 29.630 0.00 0.00 0.00 2.12
4023 4398 8.699283 AATAGGTTCAACAAAGTCGTATAGTC 57.301 34.615 0.00 0.00 0.00 2.59
4024 4399 6.342338 AGGTTCAACAAAGTCGTATAGTCT 57.658 37.500 0.00 0.00 0.00 3.24
4025 4400 6.756221 AGGTTCAACAAAGTCGTATAGTCTT 58.244 36.000 0.00 0.00 0.00 3.01
4026 4401 6.867293 AGGTTCAACAAAGTCGTATAGTCTTC 59.133 38.462 0.00 0.00 0.00 2.87
4027 4402 6.643770 GGTTCAACAAAGTCGTATAGTCTTCA 59.356 38.462 0.00 0.00 0.00 3.02
4028 4403 7.170320 GGTTCAACAAAGTCGTATAGTCTTCAA 59.830 37.037 0.00 0.00 0.00 2.69
4029 4404 7.633361 TCAACAAAGTCGTATAGTCTTCAAC 57.367 36.000 0.00 0.00 0.00 3.18
4031 4406 7.707464 TCAACAAAGTCGTATAGTCTTCAACAA 59.293 33.333 0.00 0.00 0.00 2.83
4032 4407 8.332464 CAACAAAGTCGTATAGTCTTCAACAAA 58.668 33.333 0.00 0.00 0.00 2.83
4033 4408 8.428186 ACAAAGTCGTATAGTCTTCAACAAAA 57.572 30.769 0.00 0.00 0.00 2.44
4034 4409 9.052759 ACAAAGTCGTATAGTCTTCAACAAAAT 57.947 29.630 0.00 0.00 0.00 1.82
4039 4414 9.968743 GTCGTATAGTCTTCAACAAAATAAAGG 57.031 33.333 0.00 0.00 0.00 3.11
4041 4416 7.634817 CGTATAGTCTTCAACAAAATAAAGGCG 59.365 37.037 0.00 0.00 0.00 5.52
4042 4417 7.681939 ATAGTCTTCAACAAAATAAAGGCGA 57.318 32.000 0.00 0.00 0.00 5.54
4043 4418 6.002062 AGTCTTCAACAAAATAAAGGCGAG 57.998 37.500 0.00 0.00 0.00 5.03
4044 4419 4.617223 GTCTTCAACAAAATAAAGGCGAGC 59.383 41.667 0.00 0.00 0.00 5.03
4047 4422 3.818210 TCAACAAAATAAAGGCGAGCTCA 59.182 39.130 15.40 0.00 0.00 4.26
4048 4423 3.831715 ACAAAATAAAGGCGAGCTCAC 57.168 42.857 15.40 3.30 0.00 3.51
4049 4424 2.488153 ACAAAATAAAGGCGAGCTCACC 59.512 45.455 13.15 13.15 0.00 4.02
4050 4425 1.369625 AAATAAAGGCGAGCTCACCG 58.630 50.000 15.01 1.71 0.00 4.94
4051 4426 0.535335 AATAAAGGCGAGCTCACCGA 59.465 50.000 15.01 5.42 0.00 4.69
4070 4445 1.204941 GAGAGCCTCGAAGCTAAACCA 59.795 52.381 8.88 0.00 45.15 3.67
4072 4447 2.003301 GAGCCTCGAAGCTAAACCAAG 58.997 52.381 8.88 0.00 45.15 3.61
4073 4448 1.623811 AGCCTCGAAGCTAAACCAAGA 59.376 47.619 6.77 0.00 42.70 3.02
4074 4449 2.038557 AGCCTCGAAGCTAAACCAAGAA 59.961 45.455 6.77 0.00 42.70 2.52
4075 4450 2.812011 GCCTCGAAGCTAAACCAAGAAA 59.188 45.455 0.00 0.00 0.00 2.52
4076 4451 3.252458 GCCTCGAAGCTAAACCAAGAAAA 59.748 43.478 0.00 0.00 0.00 2.29
4077 4452 4.261447 GCCTCGAAGCTAAACCAAGAAAAA 60.261 41.667 0.00 0.00 0.00 1.94
4093 4468 2.394930 AAAAACCACAAGGCCACAAC 57.605 45.000 5.01 0.00 39.06 3.32
4094 4469 0.539518 AAAACCACAAGGCCACAACC 59.460 50.000 5.01 0.00 39.06 3.77
4095 4470 1.671901 AAACCACAAGGCCACAACCG 61.672 55.000 5.01 0.00 39.06 4.44
4096 4471 3.294493 CCACAAGGCCACAACCGG 61.294 66.667 5.01 0.00 33.69 5.28
4116 4491 6.313744 CCGGCTGGTAAAATAAAAGATAGG 57.686 41.667 2.29 0.00 0.00 2.57
4118 4493 6.544564 CCGGCTGGTAAAATAAAAGATAGGAA 59.455 38.462 2.29 0.00 0.00 3.36
4120 4495 8.463607 CGGCTGGTAAAATAAAAGATAGGAAAA 58.536 33.333 0.00 0.00 0.00 2.29
4121 4496 9.582431 GGCTGGTAAAATAAAAGATAGGAAAAC 57.418 33.333 0.00 0.00 0.00 2.43
4146 4521 9.080097 ACTAATTGTCTATCCTACTACATGACC 57.920 37.037 0.00 0.00 0.00 4.02
4147 4522 6.576662 ATTGTCTATCCTACTACATGACCG 57.423 41.667 0.00 0.00 0.00 4.79
4148 4523 3.819337 TGTCTATCCTACTACATGACCGC 59.181 47.826 0.00 0.00 0.00 5.68
4149 4524 3.190953 GTCTATCCTACTACATGACCGCC 59.809 52.174 0.00 0.00 0.00 6.13
4150 4525 2.082140 ATCCTACTACATGACCGCCA 57.918 50.000 0.00 0.00 0.00 5.69
4152 4527 1.479323 TCCTACTACATGACCGCCAAC 59.521 52.381 0.00 0.00 0.00 3.77
4153 4528 1.472728 CCTACTACATGACCGCCAACC 60.473 57.143 0.00 0.00 0.00 3.77
4154 4529 1.206132 CTACTACATGACCGCCAACCA 59.794 52.381 0.00 0.00 0.00 3.67
4155 4530 0.398696 ACTACATGACCGCCAACCAA 59.601 50.000 0.00 0.00 0.00 3.67
4156 4531 1.202830 ACTACATGACCGCCAACCAAA 60.203 47.619 0.00 0.00 0.00 3.28
4158 4533 1.288752 CATGACCGCCAACCAAACC 59.711 57.895 0.00 0.00 0.00 3.27
4159 4534 2.265182 ATGACCGCCAACCAAACCG 61.265 57.895 0.00 0.00 0.00 4.44
4160 4535 3.666253 GACCGCCAACCAAACCGG 61.666 66.667 0.00 0.00 45.80 5.28
4173 4548 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
4174 4549 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
4175 4550 0.106149 ACCGGTTGAAGATATCCCGC 59.894 55.000 0.00 0.00 37.37 6.13
4177 4552 1.557443 CGGTTGAAGATATCCCGCGC 61.557 60.000 0.00 0.00 0.00 6.86
4178 4553 0.249911 GGTTGAAGATATCCCGCGCT 60.250 55.000 5.56 0.00 0.00 5.92
4179 4554 1.000506 GGTTGAAGATATCCCGCGCTA 59.999 52.381 5.56 0.00 0.00 4.26
4181 4556 2.924290 GTTGAAGATATCCCGCGCTATC 59.076 50.000 5.56 6.03 0.00 2.08
4182 4557 2.167662 TGAAGATATCCCGCGCTATCA 58.832 47.619 14.57 6.96 0.00 2.15
4183 4558 2.760650 TGAAGATATCCCGCGCTATCAT 59.239 45.455 14.57 4.85 0.00 2.45
4184 4559 3.181486 TGAAGATATCCCGCGCTATCATC 60.181 47.826 14.57 12.62 0.00 2.92
4185 4560 2.660572 AGATATCCCGCGCTATCATCT 58.339 47.619 14.57 9.09 0.00 2.90
4186 4561 2.621055 AGATATCCCGCGCTATCATCTC 59.379 50.000 14.57 1.00 0.00 2.75
4188 4563 1.608717 ATCCCGCGCTATCATCTCCC 61.609 60.000 5.56 0.00 0.00 4.30
4189 4564 2.574018 CCCGCGCTATCATCTCCCA 61.574 63.158 5.56 0.00 0.00 4.37
4190 4565 1.373497 CCGCGCTATCATCTCCCAC 60.373 63.158 5.56 0.00 0.00 4.61
4192 4567 1.373497 GCGCTATCATCTCCCACCG 60.373 63.158 0.00 0.00 0.00 4.94
4194 4569 1.179174 CGCTATCATCTCCCACCGGA 61.179 60.000 9.46 0.00 36.45 5.14
4195 4570 0.318762 GCTATCATCTCCCACCGGAC 59.681 60.000 9.46 0.00 33.32 4.79
4196 4571 1.704641 CTATCATCTCCCACCGGACA 58.295 55.000 9.46 0.00 33.32 4.02
4197 4572 1.615883 CTATCATCTCCCACCGGACAG 59.384 57.143 9.46 0.00 33.32 3.51
4198 4573 0.032117 ATCATCTCCCACCGGACAGA 60.032 55.000 9.46 3.41 33.32 3.41
4199 4574 0.032117 TCATCTCCCACCGGACAGAT 60.032 55.000 9.46 5.91 33.32 2.90
4201 4576 0.760945 ATCTCCCACCGGACAGATCC 60.761 60.000 9.46 0.00 42.28 3.36
4202 4577 1.685765 CTCCCACCGGACAGATCCA 60.686 63.158 9.46 0.00 46.67 3.41
4203 4578 1.680522 CTCCCACCGGACAGATCCAG 61.681 65.000 9.46 0.00 46.67 3.86
4204 4579 1.990060 CCCACCGGACAGATCCAGT 60.990 63.158 9.46 0.00 46.67 4.00
4205 4580 0.686441 CCCACCGGACAGATCCAGTA 60.686 60.000 9.46 0.00 46.67 2.74
4206 4581 1.191535 CCACCGGACAGATCCAGTAA 58.808 55.000 9.46 0.00 46.67 2.24
4207 4582 1.134788 CCACCGGACAGATCCAGTAAC 60.135 57.143 9.46 0.00 46.67 2.50
4210 4585 1.553248 CCGGACAGATCCAGTAACCAA 59.447 52.381 0.00 0.00 46.67 3.67
4211 4586 2.027561 CCGGACAGATCCAGTAACCAAA 60.028 50.000 0.00 0.00 46.67 3.28
4212 4587 3.000727 CGGACAGATCCAGTAACCAAAC 58.999 50.000 0.00 0.00 46.67 2.93
4213 4588 3.000727 GGACAGATCCAGTAACCAAACG 58.999 50.000 0.00 0.00 45.47 3.60
4214 4589 2.415512 GACAGATCCAGTAACCAAACGC 59.584 50.000 0.00 0.00 0.00 4.84
4216 4591 2.673368 CAGATCCAGTAACCAAACGCTC 59.327 50.000 0.00 0.00 0.00 5.03
4219 4594 0.036306 CCAGTAACCAAACGCTCCCT 59.964 55.000 0.00 0.00 0.00 4.20
4220 4595 1.156736 CAGTAACCAAACGCTCCCTG 58.843 55.000 0.00 0.00 0.00 4.45
4221 4596 0.036306 AGTAACCAAACGCTCCCTGG 59.964 55.000 0.00 0.00 36.24 4.45
4223 4598 2.757980 TAACCAAACGCTCCCTGGCC 62.758 60.000 0.00 0.00 33.19 5.36
4224 4599 4.351054 CCAAACGCTCCCTGGCCT 62.351 66.667 3.32 0.00 0.00 5.19
4225 4600 2.747855 CAAACGCTCCCTGGCCTC 60.748 66.667 3.32 0.00 0.00 4.70
4243 4618 0.325933 TCCGTCGGAGTGAGTAAGGA 59.674 55.000 10.71 0.00 0.00 3.36
4245 4620 0.450983 CGTCGGAGTGAGTAAGGACC 59.549 60.000 0.00 0.00 0.00 4.46
4246 4621 1.542492 GTCGGAGTGAGTAAGGACCA 58.458 55.000 0.00 0.00 0.00 4.02
4248 4623 1.202964 TCGGAGTGAGTAAGGACCACA 60.203 52.381 0.00 0.00 32.33 4.17
4249 4624 1.825474 CGGAGTGAGTAAGGACCACAT 59.175 52.381 0.00 0.00 32.33 3.21
4250 4625 3.021695 CGGAGTGAGTAAGGACCACATA 58.978 50.000 0.00 0.00 32.33 2.29
4251 4626 3.181489 CGGAGTGAGTAAGGACCACATAC 60.181 52.174 0.00 0.00 32.33 2.39
4252 4627 3.181489 GGAGTGAGTAAGGACCACATACG 60.181 52.174 0.00 0.00 32.33 3.06
4253 4628 2.758979 AGTGAGTAAGGACCACATACGG 59.241 50.000 0.00 0.00 32.33 4.02
4254 4629 2.756760 GTGAGTAAGGACCACATACGGA 59.243 50.000 0.00 0.00 31.06 4.69
4257 4632 3.635373 GAGTAAGGACCACATACGGATCA 59.365 47.826 0.00 0.00 0.00 2.92
4258 4633 3.637229 AGTAAGGACCACATACGGATCAG 59.363 47.826 0.00 0.00 0.00 2.90
4259 4634 0.753262 AGGACCACATACGGATCAGC 59.247 55.000 0.00 0.00 0.00 4.26
4352 4958 5.056480 CGGTATCAAAACATCCAGCTGATA 58.944 41.667 17.39 2.75 30.56 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.007682 TGGCTCCAAAATAGACAGGTAAAC 58.992 41.667 0.00 0.00 0.00 2.01
1 2 5.249780 TGGCTCCAAAATAGACAGGTAAA 57.750 39.130 0.00 0.00 0.00 2.01
2 3 4.919774 TGGCTCCAAAATAGACAGGTAA 57.080 40.909 0.00 0.00 0.00 2.85
3 4 4.919774 TTGGCTCCAAAATAGACAGGTA 57.080 40.909 0.00 0.00 32.36 3.08
4 5 3.806949 TTGGCTCCAAAATAGACAGGT 57.193 42.857 0.00 0.00 32.36 4.00
5 6 3.119849 CGTTTGGCTCCAAAATAGACAGG 60.120 47.826 14.97 0.00 45.86 4.00
6 7 3.119849 CCGTTTGGCTCCAAAATAGACAG 60.120 47.826 14.97 1.92 45.86 3.51
7 8 2.817258 CCGTTTGGCTCCAAAATAGACA 59.183 45.455 14.97 0.00 45.86 3.41
8 9 3.487563 CCGTTTGGCTCCAAAATAGAC 57.512 47.619 14.97 3.42 45.86 2.59
21 22 3.938963 ACTTATACATCACAGCCGTTTGG 59.061 43.478 0.00 0.00 38.77 3.28
22 23 4.727734 GCACTTATACATCACAGCCGTTTG 60.728 45.833 0.00 0.00 0.00 2.93
23 24 3.374058 GCACTTATACATCACAGCCGTTT 59.626 43.478 0.00 0.00 0.00 3.60
24 25 2.936498 GCACTTATACATCACAGCCGTT 59.064 45.455 0.00 0.00 0.00 4.44
25 26 2.168521 AGCACTTATACATCACAGCCGT 59.831 45.455 0.00 0.00 0.00 5.68
26 27 2.826428 AGCACTTATACATCACAGCCG 58.174 47.619 0.00 0.00 0.00 5.52
27 28 4.201950 CCAAAGCACTTATACATCACAGCC 60.202 45.833 0.00 0.00 0.00 4.85
28 29 4.731773 GCCAAAGCACTTATACATCACAGC 60.732 45.833 0.00 0.00 39.53 4.40
29 30 4.637534 AGCCAAAGCACTTATACATCACAG 59.362 41.667 0.00 0.00 43.56 3.66
30 31 4.588899 AGCCAAAGCACTTATACATCACA 58.411 39.130 0.00 0.00 43.56 3.58
31 32 5.277538 GCTAGCCAAAGCACTTATACATCAC 60.278 44.000 2.29 0.00 43.56 3.06
32 33 4.816385 GCTAGCCAAAGCACTTATACATCA 59.184 41.667 2.29 0.00 43.56 3.07
33 34 5.059833 AGCTAGCCAAAGCACTTATACATC 58.940 41.667 12.13 0.00 45.30 3.06
34 35 5.041191 AGCTAGCCAAAGCACTTATACAT 57.959 39.130 12.13 0.00 45.30 2.29
35 36 4.487714 AGCTAGCCAAAGCACTTATACA 57.512 40.909 12.13 0.00 45.30 2.29
36 37 4.636206 ACAAGCTAGCCAAAGCACTTATAC 59.364 41.667 12.13 0.00 45.30 1.47
37 38 4.635765 CACAAGCTAGCCAAAGCACTTATA 59.364 41.667 12.13 0.00 45.30 0.98
38 39 3.441572 CACAAGCTAGCCAAAGCACTTAT 59.558 43.478 12.13 0.00 45.30 1.73
39 40 2.813754 CACAAGCTAGCCAAAGCACTTA 59.186 45.455 12.13 0.00 45.30 2.24
40 41 1.610522 CACAAGCTAGCCAAAGCACTT 59.389 47.619 12.13 0.00 45.30 3.16
41 42 1.242076 CACAAGCTAGCCAAAGCACT 58.758 50.000 12.13 0.00 45.30 4.40
42 43 0.954452 ACACAAGCTAGCCAAAGCAC 59.046 50.000 12.13 0.00 45.30 4.40
43 44 2.559698 TACACAAGCTAGCCAAAGCA 57.440 45.000 12.13 0.00 45.30 3.91
44 45 3.274288 AGATACACAAGCTAGCCAAAGC 58.726 45.455 12.13 0.00 43.11 3.51
51 52 4.541779 CGAAGGCTAGATACACAAGCTAG 58.458 47.826 0.00 0.00 36.48 3.42
52 53 3.318275 CCGAAGGCTAGATACACAAGCTA 59.682 47.826 0.00 0.00 46.14 3.32
53 54 2.101582 CCGAAGGCTAGATACACAAGCT 59.898 50.000 0.00 0.00 46.14 3.74
54 55 2.474816 CCGAAGGCTAGATACACAAGC 58.525 52.381 0.00 0.00 46.14 4.01
68 69 1.079543 CTCACACAGAGCCCGAAGG 60.080 63.158 0.00 0.00 41.40 3.46
69 70 4.586618 CTCACACAGAGCCCGAAG 57.413 61.111 0.00 0.00 37.59 3.79
77 78 8.041323 AGAAAAGTAAGAAAAGACTCACACAGA 58.959 33.333 0.00 0.00 0.00 3.41
78 79 8.202745 AGAAAAGTAAGAAAAGACTCACACAG 57.797 34.615 0.00 0.00 0.00 3.66
79 80 8.450964 CAAGAAAAGTAAGAAAAGACTCACACA 58.549 33.333 0.00 0.00 0.00 3.72
80 81 8.451748 ACAAGAAAAGTAAGAAAAGACTCACAC 58.548 33.333 0.00 0.00 0.00 3.82
81 82 8.561738 ACAAGAAAAGTAAGAAAAGACTCACA 57.438 30.769 0.00 0.00 0.00 3.58
82 83 9.278734 CAACAAGAAAAGTAAGAAAAGACTCAC 57.721 33.333 0.00 0.00 0.00 3.51
83 84 9.226606 TCAACAAGAAAAGTAAGAAAAGACTCA 57.773 29.630 0.00 0.00 0.00 3.41
84 85 9.491934 GTCAACAAGAAAAGTAAGAAAAGACTC 57.508 33.333 0.00 0.00 0.00 3.36
85 86 9.010029 TGTCAACAAGAAAAGTAAGAAAAGACT 57.990 29.630 0.00 0.00 0.00 3.24
86 87 9.620660 TTGTCAACAAGAAAAGTAAGAAAAGAC 57.379 29.630 0.00 0.00 0.00 3.01
87 88 9.620660 GTTGTCAACAAGAAAAGTAAGAAAAGA 57.379 29.630 10.93 0.00 36.39 2.52
88 89 8.860128 GGTTGTCAACAAGAAAAGTAAGAAAAG 58.140 33.333 17.29 0.00 36.39 2.27
89 90 8.581578 AGGTTGTCAACAAGAAAAGTAAGAAAA 58.418 29.630 17.29 0.00 36.39 2.29
90 91 8.117813 AGGTTGTCAACAAGAAAAGTAAGAAA 57.882 30.769 17.29 0.00 36.39 2.52
91 92 7.696992 AGGTTGTCAACAAGAAAAGTAAGAA 57.303 32.000 17.29 0.00 36.39 2.52
92 93 7.392113 TCAAGGTTGTCAACAAGAAAAGTAAGA 59.608 33.333 17.29 0.00 36.39 2.10
93 94 7.535139 TCAAGGTTGTCAACAAGAAAAGTAAG 58.465 34.615 17.29 0.00 36.39 2.34
94 95 7.392113 TCTCAAGGTTGTCAACAAGAAAAGTAA 59.608 33.333 17.29 0.00 36.39 2.24
95 96 6.882140 TCTCAAGGTTGTCAACAAGAAAAGTA 59.118 34.615 17.29 0.00 36.39 2.24
96 97 5.710099 TCTCAAGGTTGTCAACAAGAAAAGT 59.290 36.000 17.29 0.00 36.39 2.66
97 98 6.030228 GTCTCAAGGTTGTCAACAAGAAAAG 58.970 40.000 17.29 6.83 36.39 2.27
98 99 5.710099 AGTCTCAAGGTTGTCAACAAGAAAA 59.290 36.000 17.29 1.38 36.39 2.29
99 100 5.253330 AGTCTCAAGGTTGTCAACAAGAAA 58.747 37.500 17.29 0.00 36.39 2.52
100 101 4.843728 AGTCTCAAGGTTGTCAACAAGAA 58.156 39.130 17.29 0.00 36.39 2.52
101 102 4.487714 AGTCTCAAGGTTGTCAACAAGA 57.512 40.909 17.29 10.62 36.39 3.02
102 103 4.201950 CCAAGTCTCAAGGTTGTCAACAAG 60.202 45.833 17.29 8.69 36.39 3.16
103 104 3.694072 CCAAGTCTCAAGGTTGTCAACAA 59.306 43.478 17.29 0.00 0.00 2.83
104 105 3.054728 TCCAAGTCTCAAGGTTGTCAACA 60.055 43.478 17.29 0.00 0.00 3.33
105 106 3.541632 TCCAAGTCTCAAGGTTGTCAAC 58.458 45.455 7.20 7.20 0.00 3.18
106 107 3.454447 TCTCCAAGTCTCAAGGTTGTCAA 59.546 43.478 0.00 0.00 0.00 3.18
107 108 3.038280 TCTCCAAGTCTCAAGGTTGTCA 58.962 45.455 0.00 0.00 0.00 3.58
108 109 3.070302 AGTCTCCAAGTCTCAAGGTTGTC 59.930 47.826 0.00 0.00 0.00 3.18
109 110 3.041946 AGTCTCCAAGTCTCAAGGTTGT 58.958 45.455 0.00 0.00 0.00 3.32
110 111 3.760580 AGTCTCCAAGTCTCAAGGTTG 57.239 47.619 0.00 0.00 0.00 3.77
111 112 4.080299 ACAAAGTCTCCAAGTCTCAAGGTT 60.080 41.667 0.00 0.00 0.00 3.50
112 113 3.456277 ACAAAGTCTCCAAGTCTCAAGGT 59.544 43.478 0.00 0.00 0.00 3.50
113 114 3.812053 CACAAAGTCTCCAAGTCTCAAGG 59.188 47.826 0.00 0.00 0.00 3.61
114 115 3.812053 CCACAAAGTCTCCAAGTCTCAAG 59.188 47.826 0.00 0.00 0.00 3.02
115 116 3.454447 TCCACAAAGTCTCCAAGTCTCAA 59.546 43.478 0.00 0.00 0.00 3.02
116 117 3.038280 TCCACAAAGTCTCCAAGTCTCA 58.962 45.455 0.00 0.00 0.00 3.27
117 118 3.070302 AGTCCACAAAGTCTCCAAGTCTC 59.930 47.826 0.00 0.00 0.00 3.36
118 119 3.041946 AGTCCACAAAGTCTCCAAGTCT 58.958 45.455 0.00 0.00 0.00 3.24
119 120 3.477210 AGTCCACAAAGTCTCCAAGTC 57.523 47.619 0.00 0.00 0.00 3.01
120 121 5.568620 AATAGTCCACAAAGTCTCCAAGT 57.431 39.130 0.00 0.00 0.00 3.16
121 122 6.884280 AAAATAGTCCACAAAGTCTCCAAG 57.116 37.500 0.00 0.00 0.00 3.61
122 123 7.094377 GCATAAAATAGTCCACAAAGTCTCCAA 60.094 37.037 0.00 0.00 0.00 3.53
123 124 6.374333 GCATAAAATAGTCCACAAAGTCTCCA 59.626 38.462 0.00 0.00 0.00 3.86
124 125 6.599638 AGCATAAAATAGTCCACAAAGTCTCC 59.400 38.462 0.00 0.00 0.00 3.71
125 126 7.617041 AGCATAAAATAGTCCACAAAGTCTC 57.383 36.000 0.00 0.00 0.00 3.36
126 127 9.515226 TTAAGCATAAAATAGTCCACAAAGTCT 57.485 29.630 0.00 0.00 0.00 3.24
137 138 8.730680 CGGCCATCTTATTAAGCATAAAATAGT 58.269 33.333 2.24 0.00 0.00 2.12
138 139 8.730680 ACGGCCATCTTATTAAGCATAAAATAG 58.269 33.333 2.24 0.00 0.00 1.73
139 140 8.630054 ACGGCCATCTTATTAAGCATAAAATA 57.370 30.769 2.24 0.00 0.00 1.40
140 141 7.524717 ACGGCCATCTTATTAAGCATAAAAT 57.475 32.000 2.24 0.00 0.00 1.82
141 142 6.952773 ACGGCCATCTTATTAAGCATAAAA 57.047 33.333 2.24 0.00 0.00 1.52
142 143 7.361713 GCATACGGCCATCTTATTAAGCATAAA 60.362 37.037 2.24 0.00 36.11 1.40
143 144 6.093495 GCATACGGCCATCTTATTAAGCATAA 59.907 38.462 2.24 0.00 36.11 1.90
144 145 5.584649 GCATACGGCCATCTTATTAAGCATA 59.415 40.000 2.24 0.00 36.11 3.14
145 146 4.396166 GCATACGGCCATCTTATTAAGCAT 59.604 41.667 2.24 0.00 36.11 3.79
146 147 3.751175 GCATACGGCCATCTTATTAAGCA 59.249 43.478 2.24 0.00 36.11 3.91
147 148 3.751175 TGCATACGGCCATCTTATTAAGC 59.249 43.478 2.24 0.00 43.89 3.09
148 149 5.643348 TGATGCATACGGCCATCTTATTAAG 59.357 40.000 2.24 0.00 43.89 1.85
149 150 5.555966 TGATGCATACGGCCATCTTATTAA 58.444 37.500 2.24 0.00 43.89 1.40
150 151 5.159273 TGATGCATACGGCCATCTTATTA 57.841 39.130 2.24 0.00 43.89 0.98
151 152 4.019792 TGATGCATACGGCCATCTTATT 57.980 40.909 2.24 0.00 43.89 1.40
152 153 3.701205 TGATGCATACGGCCATCTTAT 57.299 42.857 2.24 0.00 43.89 1.73
153 154 3.337358 CATGATGCATACGGCCATCTTA 58.663 45.455 2.24 0.00 43.89 2.10
154 155 2.156917 CATGATGCATACGGCCATCTT 58.843 47.619 2.24 0.00 43.89 2.40
155 156 1.817357 CATGATGCATACGGCCATCT 58.183 50.000 2.24 0.00 43.89 2.90
156 157 0.169672 GCATGATGCATACGGCCATC 59.830 55.000 13.36 0.00 44.26 3.51
157 158 2.260247 GCATGATGCATACGGCCAT 58.740 52.632 13.36 0.00 44.26 4.40
158 159 3.748623 GCATGATGCATACGGCCA 58.251 55.556 13.36 0.00 44.26 5.36
175 176 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
177 178 3.764160 CTTCCCCGGCCTCTGCATC 62.764 68.421 0.00 0.00 40.13 3.91
178 179 3.801997 CTTCCCCGGCCTCTGCAT 61.802 66.667 0.00 0.00 40.13 3.96
221 222 9.182933 GACAAGTCATTAGATACGAAGGAATAC 57.817 37.037 0.00 0.00 0.00 1.89
227 228 7.702348 TGATGTGACAAGTCATTAGATACGAAG 59.298 37.037 6.15 0.00 42.18 3.79
272 277 6.765036 AGATTCATTGAATGTCGCATCTAACT 59.235 34.615 16.41 0.57 31.89 2.24
273 278 6.952743 AGATTCATTGAATGTCGCATCTAAC 58.047 36.000 16.41 0.00 31.89 2.34
306 311 7.101652 ACTAGATGTGACATTCGATGTAACT 57.898 36.000 0.00 0.00 43.70 2.24
307 312 7.757097 AACTAGATGTGACATTCGATGTAAC 57.243 36.000 0.00 7.96 45.03 2.50
313 321 7.225734 TGTTTTGAAACTAGATGTGACATTCGA 59.774 33.333 0.00 0.00 39.59 3.71
316 324 8.225603 ACTGTTTTGAAACTAGATGTGACATT 57.774 30.769 0.00 0.00 39.59 2.71
348 356 2.834549 CCTTCTATATGCCTCCGGATGT 59.165 50.000 3.57 0.00 0.00 3.06
350 358 2.472029 CCCTTCTATATGCCTCCGGAT 58.528 52.381 3.57 0.00 0.00 4.18
382 396 4.278419 CACGGAGAAAATTTGAAGGGAAGT 59.722 41.667 0.00 0.00 0.00 3.01
385 399 3.153919 CCACGGAGAAAATTTGAAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
491 506 3.699894 CTGGAGCTCACCGTGGCT 61.700 66.667 17.19 12.60 41.88 4.75
515 530 1.886777 GGAGAGGCGAGATGCTTGC 60.887 63.158 0.00 0.00 45.43 4.01
521 536 0.609681 GATACGGGGAGAGGCGAGAT 60.610 60.000 0.00 0.00 0.00 2.75
560 575 5.211973 AGAACAGGCATATCTTCTGGAGTA 58.788 41.667 0.00 0.00 33.19 2.59
602 617 2.311287 GGGGGAAGAGGATGAGCAA 58.689 57.895 0.00 0.00 0.00 3.91
663 678 6.917477 CACAAAAACTCCGATCTTTTTCATCA 59.083 34.615 1.34 0.00 29.08 3.07
964 979 1.200020 CCCGCTGTCAAAGAAATGGTC 59.800 52.381 0.00 0.00 0.00 4.02
965 980 1.247567 CCCGCTGTCAAAGAAATGGT 58.752 50.000 0.00 0.00 0.00 3.55
966 981 0.527565 CCCCGCTGTCAAAGAAATGG 59.472 55.000 0.00 0.00 0.00 3.16
967 982 0.109132 GCCCCGCTGTCAAAGAAATG 60.109 55.000 0.00 0.00 0.00 2.32
968 983 1.586154 CGCCCCGCTGTCAAAGAAAT 61.586 55.000 0.00 0.00 0.00 2.17
969 984 2.258013 CGCCCCGCTGTCAAAGAAA 61.258 57.895 0.00 0.00 0.00 2.52
970 985 2.668212 CGCCCCGCTGTCAAAGAA 60.668 61.111 0.00 0.00 0.00 2.52
990 1005 2.758089 CGTCTCCATTGCTGCTGCC 61.758 63.158 13.47 0.00 38.71 4.85
1438 1453 8.728337 TTTCAGATAACTCATGAATCTTGAGG 57.272 34.615 24.03 10.00 43.95 3.86
1673 1699 7.415592 TGCCATCAAAACCATGAAATATACA 57.584 32.000 0.00 0.00 32.06 2.29
1790 1829 4.815846 ACATTGCACCTCCAAACAATTTTC 59.184 37.500 0.00 0.00 30.54 2.29
1985 2029 8.931385 ACATTTGTCACATCATTTATTTAGCC 57.069 30.769 0.00 0.00 0.00 3.93
2100 2201 2.930826 TCTCCTTGGTTTCTGGTGAC 57.069 50.000 0.00 0.00 0.00 3.67
2101 2202 4.019321 CCTTATCTCCTTGGTTTCTGGTGA 60.019 45.833 0.00 0.00 0.00 4.02
2109 2210 2.493091 CTCCCCCTTATCTCCTTGGTT 58.507 52.381 0.00 0.00 0.00 3.67
2110 2211 1.345526 CCTCCCCCTTATCTCCTTGGT 60.346 57.143 0.00 0.00 0.00 3.67
2111 2212 1.061346 TCCTCCCCCTTATCTCCTTGG 60.061 57.143 0.00 0.00 0.00 3.61
2112 2213 2.334023 CTCCTCCCCCTTATCTCCTTG 58.666 57.143 0.00 0.00 0.00 3.61
2113 2214 1.224381 CCTCCTCCCCCTTATCTCCTT 59.776 57.143 0.00 0.00 0.00 3.36
2114 2215 0.871024 CCTCCTCCCCCTTATCTCCT 59.129 60.000 0.00 0.00 0.00 3.69
2115 2216 0.868186 TCCTCCTCCCCCTTATCTCC 59.132 60.000 0.00 0.00 0.00 3.71
2116 2217 4.234223 AGATATCCTCCTCCCCCTTATCTC 59.766 50.000 0.00 0.00 0.00 2.75
2117 2218 4.015730 CAGATATCCTCCTCCCCCTTATCT 60.016 50.000 0.00 0.00 0.00 1.98
2118 2219 4.294347 CAGATATCCTCCTCCCCCTTATC 58.706 52.174 0.00 0.00 0.00 1.75
2119 2220 3.569903 GCAGATATCCTCCTCCCCCTTAT 60.570 52.174 0.00 0.00 0.00 1.73
2120 2221 2.225650 GCAGATATCCTCCTCCCCCTTA 60.226 54.545 0.00 0.00 0.00 2.69
2121 2222 1.485978 GCAGATATCCTCCTCCCCCTT 60.486 57.143 0.00 0.00 0.00 3.95
2122 2223 0.118144 GCAGATATCCTCCTCCCCCT 59.882 60.000 0.00 0.00 0.00 4.79
2123 2224 1.261238 CGCAGATATCCTCCTCCCCC 61.261 65.000 0.00 0.00 0.00 5.40
2124 2225 1.893919 GCGCAGATATCCTCCTCCCC 61.894 65.000 0.30 0.00 0.00 4.81
2125 2226 1.594310 GCGCAGATATCCTCCTCCC 59.406 63.158 0.30 0.00 0.00 4.30
2126 2227 1.594310 GGCGCAGATATCCTCCTCC 59.406 63.158 10.83 0.00 0.00 4.30
2127 2228 1.214062 CGGCGCAGATATCCTCCTC 59.786 63.158 10.83 0.00 0.00 3.71
2128 2229 2.279069 CCGGCGCAGATATCCTCCT 61.279 63.158 10.83 0.00 0.00 3.69
2129 2230 2.262915 CCGGCGCAGATATCCTCC 59.737 66.667 10.83 0.00 0.00 4.30
2130 2231 2.433318 GCCGGCGCAGATATCCTC 60.433 66.667 12.58 0.00 34.03 3.71
2131 2232 4.008933 GGCCGGCGCAGATATCCT 62.009 66.667 22.54 0.00 36.38 3.24
2132 2233 4.314440 TGGCCGGCGCAGATATCC 62.314 66.667 22.54 3.09 36.38 2.59
2133 2234 3.044305 GTGGCCGGCGCAGATATC 61.044 66.667 22.54 3.93 36.38 1.63
2134 2235 4.969196 CGTGGCCGGCGCAGATAT 62.969 66.667 22.54 0.00 36.38 1.63
2147 2248 3.589654 TTCTCAGGAAGCGCCGTGG 62.590 63.158 2.29 0.00 43.43 4.94
2295 2445 1.542375 ACAAGCCCCCATCTCCAGT 60.542 57.895 0.00 0.00 0.00 4.00
2302 2452 1.509548 AAGGTAGCACAAGCCCCCAT 61.510 55.000 0.00 0.00 43.56 4.00
2303 2453 2.137177 GAAGGTAGCACAAGCCCCCA 62.137 60.000 0.00 0.00 43.56 4.96
2404 2563 7.966753 GGCATGTAATCTGAAGCATATAACATG 59.033 37.037 7.14 7.14 42.72 3.21
2629 2789 5.942236 GGATGGCTGATAATAAATCTGAGCA 59.058 40.000 0.00 0.00 0.00 4.26
3304 3468 3.006112 TGTCTAGAGTCGGCAAGATCT 57.994 47.619 0.00 0.00 0.00 2.75
3328 3492 4.377841 GCTTCTGGATCTTTTCGACACAAG 60.378 45.833 0.00 0.00 0.00 3.16
3948 4321 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
3966 4341 1.656652 GTGGCTGTATGCATCGTTCT 58.343 50.000 0.19 0.00 45.15 3.01
3968 4343 0.253044 AGGTGGCTGTATGCATCGTT 59.747 50.000 0.19 0.00 45.15 3.85
3969 4344 0.179073 GAGGTGGCTGTATGCATCGT 60.179 55.000 0.19 0.00 45.15 3.73
3970 4345 0.179076 TGAGGTGGCTGTATGCATCG 60.179 55.000 0.19 0.00 45.15 3.84
3978 4353 7.839200 ACCTATTTTATTTATTGAGGTGGCTGT 59.161 33.333 0.00 0.00 34.55 4.40
3980 4355 8.838649 AACCTATTTTATTTATTGAGGTGGCT 57.161 30.769 0.00 0.00 35.99 4.75
3997 4372 9.148104 GACTATACGACTTTGTTGAACCTATTT 57.852 33.333 0.00 0.00 0.00 1.40
3998 4373 8.529476 AGACTATACGACTTTGTTGAACCTATT 58.471 33.333 0.00 0.00 0.00 1.73
3999 4374 8.064336 AGACTATACGACTTTGTTGAACCTAT 57.936 34.615 0.00 0.00 0.00 2.57
4000 4375 7.458409 AGACTATACGACTTTGTTGAACCTA 57.542 36.000 0.00 0.00 0.00 3.08
4001 4376 6.342338 AGACTATACGACTTTGTTGAACCT 57.658 37.500 0.00 0.00 0.00 3.50
4002 4377 6.643770 TGAAGACTATACGACTTTGTTGAACC 59.356 38.462 0.00 0.00 0.00 3.62
4003 4378 7.633361 TGAAGACTATACGACTTTGTTGAAC 57.367 36.000 0.00 0.00 0.00 3.18
4004 4379 7.707464 TGTTGAAGACTATACGACTTTGTTGAA 59.293 33.333 0.00 0.00 0.00 2.69
4005 4380 7.204604 TGTTGAAGACTATACGACTTTGTTGA 58.795 34.615 0.00 0.00 0.00 3.18
4006 4381 7.402811 TGTTGAAGACTATACGACTTTGTTG 57.597 36.000 0.00 0.00 0.00 3.33
4007 4382 8.428186 TTTGTTGAAGACTATACGACTTTGTT 57.572 30.769 0.00 0.00 0.00 2.83
4008 4383 8.428186 TTTTGTTGAAGACTATACGACTTTGT 57.572 30.769 0.00 0.00 0.00 2.83
4013 4388 9.968743 CCTTTATTTTGTTGAAGACTATACGAC 57.031 33.333 0.00 0.00 0.00 4.34
4014 4389 8.662141 GCCTTTATTTTGTTGAAGACTATACGA 58.338 33.333 0.00 0.00 0.00 3.43
4015 4390 7.634817 CGCCTTTATTTTGTTGAAGACTATACG 59.365 37.037 0.00 0.00 0.00 3.06
4017 4392 8.780846 TCGCCTTTATTTTGTTGAAGACTATA 57.219 30.769 0.00 0.00 0.00 1.31
4019 4394 6.348213 GCTCGCCTTTATTTTGTTGAAGACTA 60.348 38.462 0.00 0.00 0.00 2.59
4020 4395 5.562890 GCTCGCCTTTATTTTGTTGAAGACT 60.563 40.000 0.00 0.00 0.00 3.24
4021 4396 4.617223 GCTCGCCTTTATTTTGTTGAAGAC 59.383 41.667 0.00 0.00 0.00 3.01
4022 4397 4.518970 AGCTCGCCTTTATTTTGTTGAAGA 59.481 37.500 0.00 0.00 0.00 2.87
4023 4398 4.798574 AGCTCGCCTTTATTTTGTTGAAG 58.201 39.130 0.00 0.00 0.00 3.02
4024 4399 4.277174 TGAGCTCGCCTTTATTTTGTTGAA 59.723 37.500 9.64 0.00 0.00 2.69
4025 4400 3.818210 TGAGCTCGCCTTTATTTTGTTGA 59.182 39.130 9.64 0.00 0.00 3.18
4026 4401 3.914364 GTGAGCTCGCCTTTATTTTGTTG 59.086 43.478 16.69 0.00 0.00 3.33
4027 4402 3.057526 GGTGAGCTCGCCTTTATTTTGTT 60.058 43.478 34.32 0.00 43.02 2.83
4028 4403 2.488153 GGTGAGCTCGCCTTTATTTTGT 59.512 45.455 34.32 0.00 43.02 2.83
4029 4404 2.476185 CGGTGAGCTCGCCTTTATTTTG 60.476 50.000 36.59 19.26 44.11 2.44
4031 4406 1.066430 TCGGTGAGCTCGCCTTTATTT 60.066 47.619 36.59 0.00 44.11 1.40
4032 4407 0.535335 TCGGTGAGCTCGCCTTTATT 59.465 50.000 36.59 0.00 44.11 1.40
4033 4408 0.103208 CTCGGTGAGCTCGCCTTTAT 59.897 55.000 36.59 0.00 44.11 1.40
4034 4409 0.963856 TCTCGGTGAGCTCGCCTTTA 60.964 55.000 36.59 23.42 44.11 1.85
4035 4410 2.219325 CTCTCGGTGAGCTCGCCTTT 62.219 60.000 36.59 0.00 44.11 3.11
4037 4412 3.137459 CTCTCGGTGAGCTCGCCT 61.137 66.667 36.59 0.00 44.11 5.52
4050 4425 1.204941 TGGTTTAGCTTCGAGGCTCTC 59.795 52.381 26.60 16.06 42.97 3.20
4051 4426 1.267121 TGGTTTAGCTTCGAGGCTCT 58.733 50.000 26.60 5.85 42.97 4.09
4054 4429 2.094762 TCTTGGTTTAGCTTCGAGGC 57.905 50.000 12.25 12.25 0.00 4.70
4055 4430 5.432885 TTTTTCTTGGTTTAGCTTCGAGG 57.567 39.130 0.00 0.00 0.00 4.63
4074 4449 1.065782 GGTTGTGGCCTTGTGGTTTTT 60.066 47.619 3.32 0.00 35.27 1.94
4075 4450 0.539518 GGTTGTGGCCTTGTGGTTTT 59.460 50.000 3.32 0.00 35.27 2.43
4076 4451 1.671901 CGGTTGTGGCCTTGTGGTTT 61.672 55.000 3.32 0.00 35.27 3.27
4077 4452 2.124693 CGGTTGTGGCCTTGTGGTT 61.125 57.895 3.32 0.00 35.27 3.67
4078 4453 2.518349 CGGTTGTGGCCTTGTGGT 60.518 61.111 3.32 0.00 35.27 4.16
4079 4454 3.294493 CCGGTTGTGGCCTTGTGG 61.294 66.667 3.32 0.00 0.00 4.17
4087 4462 1.253100 ATTTTACCAGCCGGTTGTGG 58.747 50.000 17.69 16.58 46.31 4.17
4088 4463 4.506886 TTTATTTTACCAGCCGGTTGTG 57.493 40.909 17.69 10.98 46.31 3.33
4089 4464 4.828387 TCTTTTATTTTACCAGCCGGTTGT 59.172 37.500 17.69 7.67 46.31 3.32
4090 4465 5.379732 TCTTTTATTTTACCAGCCGGTTG 57.620 39.130 11.98 11.98 46.31 3.77
4091 4466 6.320418 CCTATCTTTTATTTTACCAGCCGGTT 59.680 38.462 1.90 0.00 46.31 4.44
4093 4468 6.059484 TCCTATCTTTTATTTTACCAGCCGG 58.941 40.000 0.00 0.00 38.77 6.13
4094 4469 7.562454 TTCCTATCTTTTATTTTACCAGCCG 57.438 36.000 0.00 0.00 0.00 5.52
4095 4470 9.582431 GTTTTCCTATCTTTTATTTTACCAGCC 57.418 33.333 0.00 0.00 0.00 4.85
4120 4495 9.080097 GGTCATGTAGTAGGATAGACAATTAGT 57.920 37.037 0.00 0.00 0.00 2.24
4121 4496 8.237949 CGGTCATGTAGTAGGATAGACAATTAG 58.762 40.741 0.00 0.00 0.00 1.73
4123 4498 6.516860 GCGGTCATGTAGTAGGATAGACAATT 60.517 42.308 0.00 0.00 0.00 2.32
4124 4499 5.047943 GCGGTCATGTAGTAGGATAGACAAT 60.048 44.000 0.00 0.00 0.00 2.71
4125 4500 4.277672 GCGGTCATGTAGTAGGATAGACAA 59.722 45.833 0.00 0.00 0.00 3.18
4126 4501 3.819337 GCGGTCATGTAGTAGGATAGACA 59.181 47.826 0.00 0.00 0.00 3.41
4127 4502 3.190953 GGCGGTCATGTAGTAGGATAGAC 59.809 52.174 0.00 0.00 0.00 2.59
4128 4503 3.181437 TGGCGGTCATGTAGTAGGATAGA 60.181 47.826 0.00 0.00 0.00 1.98
4129 4504 3.154710 TGGCGGTCATGTAGTAGGATAG 58.845 50.000 0.00 0.00 0.00 2.08
4130 4505 3.232720 TGGCGGTCATGTAGTAGGATA 57.767 47.619 0.00 0.00 0.00 2.59
4132 4507 1.479323 GTTGGCGGTCATGTAGTAGGA 59.521 52.381 0.00 0.00 0.00 2.94
4137 4512 1.199097 GTTTGGTTGGCGGTCATGTAG 59.801 52.381 0.00 0.00 0.00 2.74
4138 4513 1.240256 GTTTGGTTGGCGGTCATGTA 58.760 50.000 0.00 0.00 0.00 2.29
4140 4515 1.288752 GGTTTGGTTGGCGGTCATG 59.711 57.895 0.00 0.00 0.00 3.07
4141 4516 2.265182 CGGTTTGGTTGGCGGTCAT 61.265 57.895 0.00 0.00 0.00 3.06
4143 4518 3.666253 CCGGTTTGGTTGGCGGTC 61.666 66.667 0.00 0.00 0.00 4.79
4152 4527 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
4153 4528 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
4154 4529 2.914059 CGGGATATCTTCAACCGGTTT 58.086 47.619 19.55 5.23 40.79 3.27
4155 4530 1.474498 GCGGGATATCTTCAACCGGTT 60.474 52.381 15.86 15.86 44.39 4.44
4156 4531 0.106149 GCGGGATATCTTCAACCGGT 59.894 55.000 16.06 0.00 44.39 5.28
4158 4533 1.557443 GCGCGGGATATCTTCAACCG 61.557 60.000 8.83 11.64 46.78 4.44
4159 4534 0.249911 AGCGCGGGATATCTTCAACC 60.250 55.000 8.83 0.00 0.00 3.77
4160 4535 2.433868 TAGCGCGGGATATCTTCAAC 57.566 50.000 8.83 0.00 0.00 3.18
4161 4536 2.560981 TGATAGCGCGGGATATCTTCAA 59.439 45.455 29.95 13.51 41.14 2.69
4162 4537 2.167662 TGATAGCGCGGGATATCTTCA 58.832 47.619 29.95 15.25 41.14 3.02
4163 4538 2.941453 TGATAGCGCGGGATATCTTC 57.059 50.000 29.95 13.08 41.14 2.87
4164 4539 3.027412 AGATGATAGCGCGGGATATCTT 58.973 45.455 29.95 25.54 41.14 2.40
4165 4540 2.621055 GAGATGATAGCGCGGGATATCT 59.379 50.000 29.95 17.60 41.14 1.98
4166 4541 2.287909 GGAGATGATAGCGCGGGATATC 60.288 54.545 25.60 25.60 40.99 1.63
4168 4543 1.103803 GGAGATGATAGCGCGGGATA 58.896 55.000 8.83 0.21 0.00 2.59
4171 4546 2.262915 GGGAGATGATAGCGCGGG 59.737 66.667 8.83 0.00 0.00 6.13
4172 4547 1.373497 GTGGGAGATGATAGCGCGG 60.373 63.158 8.83 0.00 0.00 6.46
4173 4548 1.373497 GGTGGGAGATGATAGCGCG 60.373 63.158 0.00 0.00 0.00 6.86
4174 4549 1.373497 CGGTGGGAGATGATAGCGC 60.373 63.158 0.00 0.00 0.00 5.92
4175 4550 1.179174 TCCGGTGGGAGATGATAGCG 61.179 60.000 0.00 0.00 37.43 4.26
4177 4552 1.615883 CTGTCCGGTGGGAGATGATAG 59.384 57.143 0.00 0.00 44.97 2.08
4178 4553 1.216930 TCTGTCCGGTGGGAGATGATA 59.783 52.381 0.00 0.00 44.97 2.15
4179 4554 0.032117 TCTGTCCGGTGGGAGATGAT 60.032 55.000 0.00 0.00 44.97 2.45
4181 4556 0.390860 GATCTGTCCGGTGGGAGATG 59.609 60.000 0.00 0.00 44.97 2.90
4182 4557 0.760945 GGATCTGTCCGGTGGGAGAT 60.761 60.000 0.00 4.16 44.97 2.75
4183 4558 1.381327 GGATCTGTCCGGTGGGAGA 60.381 63.158 0.00 0.00 44.97 3.71
4184 4559 3.221222 GGATCTGTCCGGTGGGAG 58.779 66.667 0.00 0.00 44.97 4.30
4192 4567 3.000727 CGTTTGGTTACTGGATCTGTCC 58.999 50.000 0.00 0.00 45.31 4.02
4194 4569 2.038557 AGCGTTTGGTTACTGGATCTGT 59.961 45.455 0.00 0.00 0.00 3.41
4195 4570 2.673368 GAGCGTTTGGTTACTGGATCTG 59.327 50.000 0.00 0.00 0.00 2.90
4196 4571 2.354805 GGAGCGTTTGGTTACTGGATCT 60.355 50.000 0.00 0.00 0.00 2.75
4197 4572 2.007608 GGAGCGTTTGGTTACTGGATC 58.992 52.381 0.00 0.00 0.00 3.36
4198 4573 1.339727 GGGAGCGTTTGGTTACTGGAT 60.340 52.381 0.00 0.00 0.00 3.41
4199 4574 0.035739 GGGAGCGTTTGGTTACTGGA 59.964 55.000 0.00 0.00 0.00 3.86
4201 4576 1.156736 CAGGGAGCGTTTGGTTACTG 58.843 55.000 0.00 0.00 0.00 2.74
4202 4577 0.036306 CCAGGGAGCGTTTGGTTACT 59.964 55.000 0.00 0.00 0.00 2.24
4203 4578 1.583495 GCCAGGGAGCGTTTGGTTAC 61.583 60.000 0.00 0.00 34.43 2.50
4204 4579 1.302993 GCCAGGGAGCGTTTGGTTA 60.303 57.895 0.00 0.00 34.43 2.85
4205 4580 2.597510 GCCAGGGAGCGTTTGGTT 60.598 61.111 0.00 0.00 34.43 3.67
4206 4581 4.660938 GGCCAGGGAGCGTTTGGT 62.661 66.667 0.00 0.00 34.43 3.67
4207 4582 4.351054 AGGCCAGGGAGCGTTTGG 62.351 66.667 5.01 0.00 35.06 3.28
4224 4599 0.325933 TCCTTACTCACTCCGACGGA 59.674 55.000 17.28 17.28 0.00 4.69
4225 4600 0.450983 GTCCTTACTCACTCCGACGG 59.549 60.000 7.84 7.84 0.00 4.79
4227 4602 1.201880 GTGGTCCTTACTCACTCCGAC 59.798 57.143 0.00 0.00 0.00 4.79
4228 4603 1.202964 TGTGGTCCTTACTCACTCCGA 60.203 52.381 0.00 0.00 31.73 4.55
4229 4604 1.254026 TGTGGTCCTTACTCACTCCG 58.746 55.000 0.00 0.00 31.73 4.63
4230 4605 3.181489 CGTATGTGGTCCTTACTCACTCC 60.181 52.174 0.00 0.00 31.73 3.85
4231 4606 3.181489 CCGTATGTGGTCCTTACTCACTC 60.181 52.174 0.00 0.00 31.73 3.51
4232 4607 2.758979 CCGTATGTGGTCCTTACTCACT 59.241 50.000 0.00 0.00 31.73 3.41
4233 4608 2.756760 TCCGTATGTGGTCCTTACTCAC 59.243 50.000 0.00 0.00 0.00 3.51
4234 4609 3.090210 TCCGTATGTGGTCCTTACTCA 57.910 47.619 0.00 0.00 0.00 3.41
4235 4610 3.635373 TGATCCGTATGTGGTCCTTACTC 59.365 47.826 0.00 0.00 0.00 2.59
4238 4613 2.364324 GCTGATCCGTATGTGGTCCTTA 59.636 50.000 0.00 0.00 0.00 2.69
4240 4615 0.753262 GCTGATCCGTATGTGGTCCT 59.247 55.000 0.00 0.00 0.00 3.85
4241 4616 0.249911 GGCTGATCCGTATGTGGTCC 60.250 60.000 0.00 0.00 0.00 4.46
4243 4618 1.696097 GGGGCTGATCCGTATGTGGT 61.696 60.000 0.00 0.00 34.94 4.16
4245 4620 0.180171 TTGGGGCTGATCCGTATGTG 59.820 55.000 0.00 0.00 34.94 3.21
4246 4621 0.180406 GTTGGGGCTGATCCGTATGT 59.820 55.000 0.00 0.00 34.94 2.29
4248 4623 1.445942 CGTTGGGGCTGATCCGTAT 59.554 57.895 0.00 0.00 34.94 3.06
4249 4624 2.727392 CCGTTGGGGCTGATCCGTA 61.727 63.158 0.00 0.00 34.94 4.02
4250 4625 4.096003 CCGTTGGGGCTGATCCGT 62.096 66.667 0.00 0.00 34.94 4.69
4251 4626 2.246761 TTACCGTTGGGGCTGATCCG 62.247 60.000 0.00 0.00 40.62 4.18
4252 4627 0.463833 CTTACCGTTGGGGCTGATCC 60.464 60.000 0.00 0.00 40.62 3.36
4253 4628 1.095807 GCTTACCGTTGGGGCTGATC 61.096 60.000 0.00 0.00 40.62 2.92
4254 4629 1.077716 GCTTACCGTTGGGGCTGAT 60.078 57.895 0.00 0.00 40.62 2.90
4257 4632 0.621609 TAATGCTTACCGTTGGGGCT 59.378 50.000 0.00 0.00 40.62 5.19
4258 4633 1.336755 CATAATGCTTACCGTTGGGGC 59.663 52.381 0.00 0.00 40.62 5.80
4259 4634 2.650322 ACATAATGCTTACCGTTGGGG 58.350 47.619 0.00 0.00 43.62 4.96
4352 4958 1.806496 TCACCATTCTCATCCCCGAT 58.194 50.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.