Multiple sequence alignment - TraesCS1B01G158000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G158000 chr1B 100.000 2945 0 0 1 2945 268285180 268288124 0.000000e+00 5439.0
1 TraesCS1B01G158000 chr1B 95.156 289 13 1 323 611 687414945 687415232 3.460000e-124 455.0
2 TraesCS1B01G158000 chr1B 95.122 287 13 1 321 607 495804249 495803964 4.480000e-123 451.0
3 TraesCS1B01G158000 chr1B 97.436 39 1 0 161 199 571834090 571834128 1.890000e-07 67.6
4 TraesCS1B01G158000 chr1A 92.126 2032 103 19 683 2696 239905503 239907495 0.000000e+00 2813.0
5 TraesCS1B01G158000 chr1A 87.282 401 46 4 2547 2945 239977813 239978210 1.240000e-123 453.0
6 TraesCS1B01G158000 chr1A 89.912 228 15 2 100 325 239905245 239905466 1.340000e-73 287.0
7 TraesCS1B01G158000 chr1A 92.308 65 5 0 1 65 186717105 186717169 3.130000e-15 93.5
8 TraesCS1B01G158000 chr1D 90.399 2156 123 39 836 2945 193448464 193450581 0.000000e+00 2758.0
9 TraesCS1B01G158000 chr1D 81.935 155 20 7 689 838 193448278 193448429 1.110000e-24 124.0
10 TraesCS1B01G158000 chr5D 80.568 669 105 11 2167 2829 344989083 344989732 2.640000e-135 492.0
11 TraesCS1B01G158000 chr5D 78.179 692 114 19 2161 2839 6689160 6688493 9.830000e-110 407.0
12 TraesCS1B01G158000 chr5D 76.596 611 99 20 2178 2776 551089506 551088928 2.220000e-76 296.0
13 TraesCS1B01G158000 chr5D 92.405 79 4 1 1 79 61477492 61477568 8.630000e-21 111.0
14 TraesCS1B01G158000 chr2D 95.517 290 12 1 323 612 540821512 540821224 2.070000e-126 462.0
15 TraesCS1B01G158000 chr5B 95.470 287 12 1 321 607 439263994 439263709 9.620000e-125 457.0
16 TraesCS1B01G158000 chr5B 93.846 65 4 0 1 65 650959604 650959540 6.720000e-17 99.0
17 TraesCS1B01G158000 chr7D 94.863 292 14 1 323 614 585392473 585392183 3.460000e-124 455.0
18 TraesCS1B01G158000 chr7D 77.632 304 47 12 2176 2477 530337948 530338232 6.530000e-37 165.0
19 TraesCS1B01G158000 chr7D 83.221 149 21 4 2332 2479 171008561 171008416 1.840000e-27 134.0
20 TraesCS1B01G158000 chr7D 90.000 50 4 1 65 113 136125095 136125144 2.450000e-06 63.9
21 TraesCS1B01G158000 chr3B 95.122 287 14 0 323 609 17350287 17350573 1.240000e-123 453.0
22 TraesCS1B01G158000 chr3B 95.122 287 14 0 323 609 58625642 58625928 1.240000e-123 453.0
23 TraesCS1B01G158000 chr3B 77.742 310 50 9 2171 2479 658940098 658940389 3.900000e-39 172.0
24 TraesCS1B01G158000 chr3B 77.328 247 33 14 2162 2405 770974528 770974302 1.110000e-24 124.0
25 TraesCS1B01G158000 chr3B 97.436 39 1 0 65 103 192177841 192177803 1.890000e-07 67.6
26 TraesCS1B01G158000 chr3B 97.436 39 1 0 65 103 192656300 192656338 1.890000e-07 67.6
27 TraesCS1B01G158000 chr7B 95.406 283 13 0 326 608 409014058 409013776 4.480000e-123 451.0
28 TraesCS1B01G158000 chr5A 93.355 301 18 2 323 622 637058115 637058414 7.490000e-121 444.0
29 TraesCS1B01G158000 chr6D 78.788 627 94 20 2202 2811 376636357 376636961 4.600000e-103 385.0
30 TraesCS1B01G158000 chr6D 80.128 312 38 13 2167 2473 58700840 58701132 8.270000e-51 211.0
31 TraesCS1B01G158000 chr3D 77.642 653 108 25 2167 2803 98941087 98940457 2.160000e-96 363.0
32 TraesCS1B01G158000 chr3D 97.436 39 1 0 65 103 612882908 612882870 1.890000e-07 67.6
33 TraesCS1B01G158000 chr3A 78.207 569 101 10 2175 2739 732916142 732916691 2.810000e-90 342.0
34 TraesCS1B01G158000 chr3A 97.436 39 1 0 65 103 531942741 531942779 1.890000e-07 67.6
35 TraesCS1B01G158000 chr4A 77.419 620 97 28 2177 2777 432531256 432530661 2.190000e-86 329.0
36 TraesCS1B01G158000 chr2B 76.205 643 114 25 2178 2806 400810998 400810381 1.330000e-78 303.0
37 TraesCS1B01G158000 chr4B 75.504 645 134 14 2167 2806 529341301 529341926 7.980000e-76 294.0
38 TraesCS1B01G158000 chr4B 72.654 618 120 34 2162 2766 652990336 652990917 3.040000e-35 159.0
39 TraesCS1B01G158000 chr2A 77.931 435 88 6 2350 2776 765625085 765625519 6.260000e-67 265.0
40 TraesCS1B01G158000 chr2A 87.356 87 5 3 23 103 66083201 66083287 8.690000e-16 95.3
41 TraesCS1B01G158000 chr6B 96.610 59 2 0 7 65 617177275 617177217 6.720000e-17 99.0
42 TraesCS1B01G158000 chr6B 100.000 29 0 0 75 103 185660249 185660277 1.000000e-03 54.7
43 TraesCS1B01G158000 chr7A 94.915 59 3 0 7 65 83936176 83936118 3.130000e-15 93.5
44 TraesCS1B01G158000 chr7A 92.308 65 5 0 1 65 287637885 287637949 3.130000e-15 93.5
45 TraesCS1B01G158000 chr4D 94.915 59 3 0 7 65 28237879 28237821 3.130000e-15 93.5
46 TraesCS1B01G158000 chr6A 85.882 85 7 3 23 104 110561202 110561284 5.230000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G158000 chr1B 268285180 268288124 2944 False 5439 5439 100.000 1 2945 1 chr1B.!!$F1 2944
1 TraesCS1B01G158000 chr1A 239905245 239907495 2250 False 1550 2813 91.019 100 2696 2 chr1A.!!$F3 2596
2 TraesCS1B01G158000 chr1D 193448278 193450581 2303 False 1441 2758 86.167 689 2945 2 chr1D.!!$F1 2256
3 TraesCS1B01G158000 chr5D 344989083 344989732 649 False 492 492 80.568 2167 2829 1 chr5D.!!$F2 662
4 TraesCS1B01G158000 chr5D 6688493 6689160 667 True 407 407 78.179 2161 2839 1 chr5D.!!$R1 678
5 TraesCS1B01G158000 chr5D 551088928 551089506 578 True 296 296 76.596 2178 2776 1 chr5D.!!$R2 598
6 TraesCS1B01G158000 chr6D 376636357 376636961 604 False 385 385 78.788 2202 2811 1 chr6D.!!$F2 609
7 TraesCS1B01G158000 chr3D 98940457 98941087 630 True 363 363 77.642 2167 2803 1 chr3D.!!$R1 636
8 TraesCS1B01G158000 chr3A 732916142 732916691 549 False 342 342 78.207 2175 2739 1 chr3A.!!$F2 564
9 TraesCS1B01G158000 chr4A 432530661 432531256 595 True 329 329 77.419 2177 2777 1 chr4A.!!$R1 600
10 TraesCS1B01G158000 chr2B 400810381 400810998 617 True 303 303 76.205 2178 2806 1 chr2B.!!$R1 628
11 TraesCS1B01G158000 chr4B 529341301 529341926 625 False 294 294 75.504 2167 2806 1 chr4B.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.043637 TATTTGGGGACGGAGGGAGT 59.956 55.0 0.00 0.0 0.00 3.85 F
104 105 0.043637 TTGGGGACGGAGGGAGTATT 59.956 55.0 0.00 0.0 0.00 1.89 F
654 657 0.102300 AGAACGTTTTTGCAGTGGCC 59.898 50.0 0.46 0.0 40.13 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1277 0.179161 ACGCGAGGATGAAGTCGAAG 60.179 55.0 15.93 0.0 38.5 3.79 R
1699 1794 0.803117 TCGAAGAGGCTGACGTACTG 59.197 55.0 0.00 0.0 0.0 2.74 R
2263 2360 0.038526 CTCCGGTGCTTGTAGTCGTT 60.039 55.0 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.564044 CGTCTTAAAATAAGTGACTCGACTT 57.436 36.000 0.00 0.00 39.54 3.01
25 26 8.004585 CGTCTTAAAATAAGTGACTCGACTTT 57.995 34.615 0.00 0.00 37.38 2.66
26 27 7.945178 CGTCTTAAAATAAGTGACTCGACTTTG 59.055 37.037 0.00 0.00 37.38 2.77
27 28 8.762426 GTCTTAAAATAAGTGACTCGACTTTGT 58.238 33.333 0.00 0.00 37.38 2.83
28 29 9.970395 TCTTAAAATAAGTGACTCGACTTTGTA 57.030 29.630 0.00 0.00 37.38 2.41
30 31 9.754382 TTAAAATAAGTGACTCGACTTTGTACT 57.246 29.630 0.00 0.00 37.38 2.73
31 32 7.639162 AAATAAGTGACTCGACTTTGTACTG 57.361 36.000 0.00 0.00 37.38 2.74
32 33 4.913335 AAGTGACTCGACTTTGTACTGA 57.087 40.909 0.00 0.00 31.92 3.41
33 34 4.913335 AGTGACTCGACTTTGTACTGAA 57.087 40.909 0.00 0.00 0.00 3.02
34 35 4.861210 AGTGACTCGACTTTGTACTGAAG 58.139 43.478 7.68 7.68 0.00 3.02
35 36 3.425858 GTGACTCGACTTTGTACTGAAGC 59.574 47.826 8.79 3.23 0.00 3.86
36 37 3.318275 TGACTCGACTTTGTACTGAAGCT 59.682 43.478 8.79 0.00 0.00 3.74
37 38 4.517832 TGACTCGACTTTGTACTGAAGCTA 59.482 41.667 8.79 0.00 0.00 3.32
38 39 5.049398 ACTCGACTTTGTACTGAAGCTAG 57.951 43.478 8.79 0.00 0.00 3.42
39 40 4.519730 ACTCGACTTTGTACTGAAGCTAGT 59.480 41.667 8.79 0.00 34.71 2.57
40 41 5.704515 ACTCGACTTTGTACTGAAGCTAGTA 59.295 40.000 8.79 0.00 32.19 1.82
51 52 6.163135 ACTGAAGCTAGTACAAAGTTGAGT 57.837 37.500 0.00 0.00 0.00 3.41
52 53 6.217294 ACTGAAGCTAGTACAAAGTTGAGTC 58.783 40.000 0.00 0.00 0.00 3.36
53 54 6.156748 TGAAGCTAGTACAAAGTTGAGTCA 57.843 37.500 0.00 0.00 0.00 3.41
54 55 5.983720 TGAAGCTAGTACAAAGTTGAGTCAC 59.016 40.000 0.00 0.00 0.00 3.67
55 56 5.793030 AGCTAGTACAAAGTTGAGTCACT 57.207 39.130 0.00 0.00 0.00 3.41
56 57 6.163135 AGCTAGTACAAAGTTGAGTCACTT 57.837 37.500 0.00 0.00 38.74 3.16
57 58 7.286215 AGCTAGTACAAAGTTGAGTCACTTA 57.714 36.000 0.00 0.00 35.87 2.24
58 59 7.897864 AGCTAGTACAAAGTTGAGTCACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
59 60 8.368668 AGCTAGTACAAAGTTGAGTCACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
60 61 8.989980 GCTAGTACAAAGTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
62 63 8.154649 AGTACAAAGTTGAGTCACTTATTTGG 57.845 34.615 16.63 0.00 35.87 3.28
63 64 6.391227 ACAAAGTTGAGTCACTTATTTGGG 57.609 37.500 16.63 5.42 35.87 4.12
64 65 5.301805 ACAAAGTTGAGTCACTTATTTGGGG 59.698 40.000 16.63 1.16 35.87 4.96
65 66 4.724279 AGTTGAGTCACTTATTTGGGGT 57.276 40.909 0.00 0.00 0.00 4.95
66 67 5.836024 AGTTGAGTCACTTATTTGGGGTA 57.164 39.130 0.00 0.00 0.00 3.69
67 68 5.557866 AGTTGAGTCACTTATTTGGGGTAC 58.442 41.667 0.00 0.00 0.00 3.34
68 69 5.072600 AGTTGAGTCACTTATTTGGGGTACA 59.927 40.000 0.00 0.00 0.00 2.90
69 70 5.570205 TGAGTCACTTATTTGGGGTACAA 57.430 39.130 0.00 0.00 37.28 2.41
78 79 2.825861 TTGGGGTACAAAGTCGAGTC 57.174 50.000 0.00 0.00 35.79 3.36
79 80 1.707106 TGGGGTACAAAGTCGAGTCA 58.293 50.000 0.00 0.00 0.00 3.41
80 81 1.342174 TGGGGTACAAAGTCGAGTCAC 59.658 52.381 0.00 0.00 0.00 3.67
81 82 1.617357 GGGGTACAAAGTCGAGTCACT 59.383 52.381 0.00 0.00 0.00 3.41
82 83 2.036862 GGGGTACAAAGTCGAGTCACTT 59.963 50.000 0.00 3.11 38.30 3.16
83 84 3.256631 GGGGTACAAAGTCGAGTCACTTA 59.743 47.826 0.00 0.00 35.45 2.24
84 85 4.081807 GGGGTACAAAGTCGAGTCACTTAT 60.082 45.833 0.00 4.10 35.45 1.73
85 86 5.476614 GGGTACAAAGTCGAGTCACTTATT 58.523 41.667 0.00 2.93 35.45 1.40
86 87 5.930569 GGGTACAAAGTCGAGTCACTTATTT 59.069 40.000 0.00 1.15 35.45 1.40
87 88 6.128634 GGGTACAAAGTCGAGTCACTTATTTG 60.129 42.308 0.00 0.00 35.45 2.32
88 89 5.924475 ACAAAGTCGAGTCACTTATTTGG 57.076 39.130 0.00 1.65 35.45 3.28
89 90 4.755123 ACAAAGTCGAGTCACTTATTTGGG 59.245 41.667 0.00 0.00 35.45 4.12
90 91 3.611766 AGTCGAGTCACTTATTTGGGG 57.388 47.619 0.00 0.00 0.00 4.96
91 92 3.170717 AGTCGAGTCACTTATTTGGGGA 58.829 45.455 0.00 0.00 0.00 4.81
92 93 3.056035 AGTCGAGTCACTTATTTGGGGAC 60.056 47.826 0.00 0.00 0.00 4.46
93 94 2.094390 TCGAGTCACTTATTTGGGGACG 60.094 50.000 0.00 0.00 33.84 4.79
94 95 2.629051 GAGTCACTTATTTGGGGACGG 58.371 52.381 0.00 0.00 33.84 4.79
95 96 2.235402 GAGTCACTTATTTGGGGACGGA 59.765 50.000 0.00 0.00 33.84 4.69
96 97 2.236395 AGTCACTTATTTGGGGACGGAG 59.764 50.000 0.00 0.00 33.84 4.63
97 98 1.557832 TCACTTATTTGGGGACGGAGG 59.442 52.381 0.00 0.00 0.00 4.30
98 99 0.916809 ACTTATTTGGGGACGGAGGG 59.083 55.000 0.00 0.00 0.00 4.30
99 100 1.209621 CTTATTTGGGGACGGAGGGA 58.790 55.000 0.00 0.00 0.00 4.20
100 101 1.141053 CTTATTTGGGGACGGAGGGAG 59.859 57.143 0.00 0.00 0.00 4.30
101 102 0.043637 TATTTGGGGACGGAGGGAGT 59.956 55.000 0.00 0.00 0.00 3.85
102 103 0.043637 ATTTGGGGACGGAGGGAGTA 59.956 55.000 0.00 0.00 0.00 2.59
103 104 0.043637 TTTGGGGACGGAGGGAGTAT 59.956 55.000 0.00 0.00 0.00 2.12
104 105 0.043637 TTGGGGACGGAGGGAGTATT 59.956 55.000 0.00 0.00 0.00 1.89
105 106 0.043637 TGGGGACGGAGGGAGTATTT 59.956 55.000 0.00 0.00 0.00 1.40
106 107 0.757512 GGGGACGGAGGGAGTATTTC 59.242 60.000 0.00 0.00 0.00 2.17
107 108 1.691801 GGGGACGGAGGGAGTATTTCT 60.692 57.143 0.00 0.00 0.00 2.52
154 155 9.174166 GTCAACATATTCACATAAAAGTACCCT 57.826 33.333 0.00 0.00 0.00 4.34
155 156 9.747898 TCAACATATTCACATAAAAGTACCCTT 57.252 29.630 0.00 0.00 0.00 3.95
210 211 5.652324 ACGGAGGGAGTAACTATATCCATT 58.348 41.667 0.00 0.00 34.62 3.16
229 230 5.422331 TCCATTTCAACACCCTAAAACAACA 59.578 36.000 0.00 0.00 0.00 3.33
230 231 6.098982 TCCATTTCAACACCCTAAAACAACAT 59.901 34.615 0.00 0.00 0.00 2.71
231 232 6.765512 CCATTTCAACACCCTAAAACAACATT 59.234 34.615 0.00 0.00 0.00 2.71
232 233 7.928706 CCATTTCAACACCCTAAAACAACATTA 59.071 33.333 0.00 0.00 0.00 1.90
233 234 9.487790 CATTTCAACACCCTAAAACAACATTAT 57.512 29.630 0.00 0.00 0.00 1.28
273 276 9.527157 TTCCAGATGAAACAACATTTATTCCTA 57.473 29.630 0.00 0.00 0.00 2.94
323 326 6.909550 ATTGGTGGTCAAAGTTGCTTATTA 57.090 33.333 0.00 0.00 39.05 0.98
324 327 6.716934 TTGGTGGTCAAAGTTGCTTATTAA 57.283 33.333 0.00 0.00 31.46 1.40
325 328 6.325919 TGGTGGTCAAAGTTGCTTATTAAG 57.674 37.500 0.00 0.00 0.00 1.85
326 329 6.065374 TGGTGGTCAAAGTTGCTTATTAAGA 58.935 36.000 7.63 0.00 0.00 2.10
327 330 6.206634 TGGTGGTCAAAGTTGCTTATTAAGAG 59.793 38.462 7.63 0.00 0.00 2.85
328 331 6.349363 GGTGGTCAAAGTTGCTTATTAAGAGG 60.349 42.308 7.63 0.00 0.00 3.69
329 332 5.710099 TGGTCAAAGTTGCTTATTAAGAGGG 59.290 40.000 7.63 0.00 0.00 4.30
330 333 5.710567 GGTCAAAGTTGCTTATTAAGAGGGT 59.289 40.000 7.63 0.00 0.00 4.34
331 334 6.349363 GGTCAAAGTTGCTTATTAAGAGGGTG 60.349 42.308 7.63 0.00 0.00 4.61
332 335 6.206829 GTCAAAGTTGCTTATTAAGAGGGTGT 59.793 38.462 7.63 0.00 0.00 4.16
333 336 6.775629 TCAAAGTTGCTTATTAAGAGGGTGTT 59.224 34.615 7.63 0.00 0.00 3.32
334 337 7.286775 TCAAAGTTGCTTATTAAGAGGGTGTTT 59.713 33.333 7.63 0.00 0.00 2.83
335 338 6.575162 AGTTGCTTATTAAGAGGGTGTTTG 57.425 37.500 7.63 0.00 0.00 2.93
336 339 6.068670 AGTTGCTTATTAAGAGGGTGTTTGT 58.931 36.000 7.63 0.00 0.00 2.83
337 340 6.549736 AGTTGCTTATTAAGAGGGTGTTTGTT 59.450 34.615 7.63 0.00 0.00 2.83
338 341 6.969993 TGCTTATTAAGAGGGTGTTTGTTT 57.030 33.333 7.63 0.00 0.00 2.83
339 342 7.354751 TGCTTATTAAGAGGGTGTTTGTTTT 57.645 32.000 7.63 0.00 0.00 2.43
340 343 7.430441 TGCTTATTAAGAGGGTGTTTGTTTTC 58.570 34.615 7.63 0.00 0.00 2.29
341 344 7.068839 TGCTTATTAAGAGGGTGTTTGTTTTCA 59.931 33.333 7.63 0.00 0.00 2.69
342 345 7.595130 GCTTATTAAGAGGGTGTTTGTTTTCAG 59.405 37.037 7.63 0.00 0.00 3.02
343 346 5.845391 TTAAGAGGGTGTTTGTTTTCAGG 57.155 39.130 0.00 0.00 0.00 3.86
344 347 2.666317 AGAGGGTGTTTGTTTTCAGGG 58.334 47.619 0.00 0.00 0.00 4.45
345 348 2.243736 AGAGGGTGTTTGTTTTCAGGGA 59.756 45.455 0.00 0.00 0.00 4.20
346 349 2.361119 GAGGGTGTTTGTTTTCAGGGAC 59.639 50.000 0.00 0.00 0.00 4.46
347 350 2.024369 AGGGTGTTTGTTTTCAGGGACT 60.024 45.455 0.00 0.00 43.88 3.85
348 351 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
349 352 3.955551 GGGTGTTTGTTTTCAGGGACTTA 59.044 43.478 0.00 0.00 34.60 2.24
350 353 4.587262 GGGTGTTTGTTTTCAGGGACTTAT 59.413 41.667 0.00 0.00 34.60 1.73
351 354 5.069914 GGGTGTTTGTTTTCAGGGACTTATT 59.930 40.000 0.00 0.00 34.60 1.40
352 355 5.983118 GGTGTTTGTTTTCAGGGACTTATTG 59.017 40.000 0.00 0.00 34.60 1.90
353 356 6.183360 GGTGTTTGTTTTCAGGGACTTATTGA 60.183 38.462 0.00 0.00 34.60 2.57
354 357 7.433680 GTGTTTGTTTTCAGGGACTTATTGAT 58.566 34.615 0.00 0.00 34.60 2.57
355 358 7.926018 GTGTTTGTTTTCAGGGACTTATTGATT 59.074 33.333 0.00 0.00 34.60 2.57
356 359 8.482128 TGTTTGTTTTCAGGGACTTATTGATTT 58.518 29.630 0.00 0.00 34.60 2.17
357 360 9.974980 GTTTGTTTTCAGGGACTTATTGATTTA 57.025 29.630 0.00 0.00 34.60 1.40
359 362 8.348285 TGTTTTCAGGGACTTATTGATTTAGG 57.652 34.615 0.00 0.00 34.60 2.69
360 363 7.396055 TGTTTTCAGGGACTTATTGATTTAGGG 59.604 37.037 0.00 0.00 34.60 3.53
361 364 6.901615 TTCAGGGACTTATTGATTTAGGGA 57.098 37.500 0.00 0.00 34.60 4.20
362 365 6.248569 TCAGGGACTTATTGATTTAGGGAC 57.751 41.667 0.00 0.00 34.60 4.46
363 366 5.970640 TCAGGGACTTATTGATTTAGGGACT 59.029 40.000 0.00 0.00 39.39 3.85
364 367 6.447084 TCAGGGACTTATTGATTTAGGGACTT 59.553 38.462 0.00 0.00 36.39 3.01
365 368 7.626084 TCAGGGACTTATTGATTTAGGGACTTA 59.374 37.037 0.00 0.00 36.39 2.24
366 369 8.272173 CAGGGACTTATTGATTTAGGGACTTAA 58.728 37.037 0.00 0.00 36.39 1.85
367 370 8.842764 AGGGACTTATTGATTTAGGGACTTAAA 58.157 33.333 0.00 0.00 34.75 1.52
368 371 9.470399 GGGACTTATTGATTTAGGGACTTAAAA 57.530 33.333 0.00 0.00 41.75 1.52
390 393 6.606241 AAAAGTCCCTATAAATCCCATCCA 57.394 37.500 0.00 0.00 0.00 3.41
391 394 6.606241 AAAGTCCCTATAAATCCCATCCAA 57.394 37.500 0.00 0.00 0.00 3.53
392 395 6.606241 AAGTCCCTATAAATCCCATCCAAA 57.394 37.500 0.00 0.00 0.00 3.28
393 396 5.953571 AGTCCCTATAAATCCCATCCAAAC 58.046 41.667 0.00 0.00 0.00 2.93
394 397 5.077564 GTCCCTATAAATCCCATCCAAACC 58.922 45.833 0.00 0.00 0.00 3.27
395 398 4.734503 TCCCTATAAATCCCATCCAAACCA 59.265 41.667 0.00 0.00 0.00 3.67
396 399 5.196779 TCCCTATAAATCCCATCCAAACCAA 59.803 40.000 0.00 0.00 0.00 3.67
397 400 5.902431 CCCTATAAATCCCATCCAAACCAAA 59.098 40.000 0.00 0.00 0.00 3.28
398 401 6.183360 CCCTATAAATCCCATCCAAACCAAAC 60.183 42.308 0.00 0.00 0.00 2.93
399 402 6.382570 CCTATAAATCCCATCCAAACCAAACA 59.617 38.462 0.00 0.00 0.00 2.83
400 403 4.622260 AAATCCCATCCAAACCAAACAG 57.378 40.909 0.00 0.00 0.00 3.16
401 404 2.008242 TCCCATCCAAACCAAACAGG 57.992 50.000 0.00 0.00 45.67 4.00
402 405 1.501170 TCCCATCCAAACCAAACAGGA 59.499 47.619 0.00 0.00 41.22 3.86
403 406 1.895131 CCCATCCAAACCAAACAGGAG 59.105 52.381 0.00 0.00 41.22 3.69
404 407 1.895131 CCATCCAAACCAAACAGGAGG 59.105 52.381 0.00 0.00 41.22 4.30
405 408 1.895131 CATCCAAACCAAACAGGAGGG 59.105 52.381 0.00 0.00 41.22 4.30
406 409 1.227249 TCCAAACCAAACAGGAGGGA 58.773 50.000 0.00 0.00 41.22 4.20
407 410 1.133606 TCCAAACCAAACAGGAGGGAC 60.134 52.381 0.00 0.00 41.22 4.46
409 412 2.666317 CAAACCAAACAGGAGGGACTT 58.334 47.619 0.00 0.00 41.55 3.01
410 413 3.435890 CCAAACCAAACAGGAGGGACTTA 60.436 47.826 0.00 0.00 41.55 2.24
411 414 4.407365 CAAACCAAACAGGAGGGACTTAT 58.593 43.478 0.00 0.00 41.55 1.73
412 415 5.515886 CCAAACCAAACAGGAGGGACTTATA 60.516 44.000 0.00 0.00 41.55 0.98
413 416 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
414 417 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
415 418 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
416 419 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
417 420 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
418 421 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
419 422 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
420 423 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
421 424 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
422 425 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
423 426 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
424 427 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
425 428 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
426 429 5.130643 AGGGACTTATAGGGACTTAAAGTGC 59.869 44.000 0.00 0.00 43.84 4.40
427 430 5.048507 GGACTTATAGGGACTTAAAGTGCG 58.951 45.833 0.00 0.00 40.60 5.34
428 431 4.439968 ACTTATAGGGACTTAAAGTGCGC 58.560 43.478 0.00 0.00 39.58 6.09
429 432 4.081309 ACTTATAGGGACTTAAAGTGCGCA 60.081 41.667 5.66 5.66 39.58 6.09
430 433 3.560636 ATAGGGACTTAAAGTGCGCAT 57.439 42.857 15.91 0.00 41.75 4.73
431 434 2.200373 AGGGACTTAAAGTGCGCATT 57.800 45.000 15.91 6.43 37.44 3.56
432 435 2.514803 AGGGACTTAAAGTGCGCATTT 58.485 42.857 15.91 14.23 37.44 2.32
433 436 2.228822 AGGGACTTAAAGTGCGCATTTG 59.771 45.455 19.44 9.27 37.44 2.32
434 437 2.595386 GGACTTAAAGTGCGCATTTGG 58.405 47.619 19.44 13.97 0.00 3.28
435 438 2.595386 GACTTAAAGTGCGCATTTGGG 58.405 47.619 19.44 13.65 0.00 4.12
436 439 2.227865 GACTTAAAGTGCGCATTTGGGA 59.772 45.455 19.44 5.04 0.00 4.37
437 440 2.030274 ACTTAAAGTGCGCATTTGGGAC 60.030 45.455 19.44 0.77 0.00 4.46
438 441 1.904287 TAAAGTGCGCATTTGGGACT 58.096 45.000 19.44 3.51 0.00 3.85
439 442 1.039856 AAAGTGCGCATTTGGGACTT 58.960 45.000 19.44 10.07 33.47 3.01
440 443 1.904287 AAGTGCGCATTTGGGACTTA 58.096 45.000 18.03 0.00 31.84 2.24
441 444 2.128771 AGTGCGCATTTGGGACTTAT 57.871 45.000 15.91 0.00 0.00 1.73
442 445 1.745087 AGTGCGCATTTGGGACTTATG 59.255 47.619 15.91 0.00 0.00 1.90
443 446 1.742831 GTGCGCATTTGGGACTTATGA 59.257 47.619 15.91 0.00 0.00 2.15
444 447 2.163412 GTGCGCATTTGGGACTTATGAA 59.837 45.455 15.91 0.00 0.00 2.57
445 448 2.822561 TGCGCATTTGGGACTTATGAAA 59.177 40.909 5.66 0.00 0.00 2.69
446 449 3.446873 TGCGCATTTGGGACTTATGAAAT 59.553 39.130 5.66 0.00 0.00 2.17
447 450 4.642437 TGCGCATTTGGGACTTATGAAATA 59.358 37.500 5.66 0.00 0.00 1.40
448 451 5.126222 TGCGCATTTGGGACTTATGAAATAA 59.874 36.000 5.66 0.00 36.20 1.40
464 467 6.891306 TGAAATAAGATTCTCAAGGAGGGA 57.109 37.500 0.00 0.00 0.00 4.20
465 468 6.653989 TGAAATAAGATTCTCAAGGAGGGAC 58.346 40.000 0.00 0.00 0.00 4.46
467 470 6.899892 AATAAGATTCTCAAGGAGGGACTT 57.100 37.500 0.00 0.00 41.55 3.01
468 471 7.996758 AATAAGATTCTCAAGGAGGGACTTA 57.003 36.000 0.00 0.00 41.55 2.24
469 472 8.574309 AATAAGATTCTCAAGGAGGGACTTAT 57.426 34.615 0.00 0.00 41.55 1.73
470 473 9.676129 AATAAGATTCTCAAGGAGGGACTTATA 57.324 33.333 0.00 0.00 41.55 0.98
471 474 7.610580 AAGATTCTCAAGGAGGGACTTATAG 57.389 40.000 0.00 0.00 41.55 1.31
472 475 6.081356 AGATTCTCAAGGAGGGACTTATAGG 58.919 44.000 0.00 0.00 41.55 2.57
473 476 4.200447 TCTCAAGGAGGGACTTATAGGG 57.800 50.000 0.00 0.00 41.55 3.53
474 477 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
475 478 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
476 479 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
477 480 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
478 481 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
479 482 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
480 483 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
481 484 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
482 485 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
483 486 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
484 487 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
485 488 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
486 489 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
487 490 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
496 499 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
525 528 7.712204 GGATTTATAAGTCCCAGAAACCAAA 57.288 36.000 14.59 0.00 0.00 3.28
526 529 7.544622 GGATTTATAAGTCCCAGAAACCAAAC 58.455 38.462 14.59 0.00 0.00 2.93
527 530 7.177744 GGATTTATAAGTCCCAGAAACCAAACA 59.822 37.037 14.59 0.00 0.00 2.83
528 531 7.519032 TTTATAAGTCCCAGAAACCAAACAG 57.481 36.000 0.00 0.00 0.00 3.16
529 532 2.364972 AGTCCCAGAAACCAAACAGG 57.635 50.000 0.00 0.00 45.67 4.00
543 546 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
544 547 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
545 548 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
546 549 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
547 550 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
548 551 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
549 552 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
550 553 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
551 554 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
552 555 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
553 556 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
554 557 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
555 558 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
556 559 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
557 560 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
558 561 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
559 562 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
560 563 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
561 564 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
562 565 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
563 566 6.803366 TTAGGGACTTGGGACTTATAAGTC 57.197 41.667 29.84 29.84 46.96 3.01
600 603 8.974060 AAGTCTTAGAACTTATGAACCAAACA 57.026 30.769 0.00 0.00 37.71 2.83
601 604 8.608844 AGTCTTAGAACTTATGAACCAAACAG 57.391 34.615 0.00 0.00 0.00 3.16
602 605 7.661847 AGTCTTAGAACTTATGAACCAAACAGG 59.338 37.037 0.00 0.00 45.67 4.00
603 606 6.940298 TCTTAGAACTTATGAACCAAACAGGG 59.060 38.462 0.00 0.00 43.89 4.45
604 607 3.826729 AGAACTTATGAACCAAACAGGGC 59.173 43.478 0.00 0.00 43.89 5.19
605 608 2.525368 ACTTATGAACCAAACAGGGCC 58.475 47.619 0.00 0.00 43.89 5.80
606 609 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
609 612 2.286365 TGAACCAAACAGGGCCTAAG 57.714 50.000 5.28 0.00 43.89 2.18
629 632 3.840991 AGTACTACACCCTCTGTTCACA 58.159 45.455 0.00 0.00 33.91 3.58
637 640 4.102524 ACACCCTCTGTTCACAAATGTAGA 59.897 41.667 0.00 0.00 0.00 2.59
647 650 6.034044 TGTTCACAAATGTAGAACGTTTTTGC 59.966 34.615 17.86 8.15 43.36 3.68
648 651 5.641709 TCACAAATGTAGAACGTTTTTGCA 58.358 33.333 17.86 12.64 35.72 4.08
649 652 5.741510 TCACAAATGTAGAACGTTTTTGCAG 59.258 36.000 17.86 12.70 35.72 4.41
650 653 5.514914 CACAAATGTAGAACGTTTTTGCAGT 59.485 36.000 17.86 9.65 35.31 4.40
651 654 5.514914 ACAAATGTAGAACGTTTTTGCAGTG 59.485 36.000 17.86 14.71 35.31 3.66
652 655 3.684103 TGTAGAACGTTTTTGCAGTGG 57.316 42.857 0.46 0.00 0.00 4.00
653 656 2.223386 TGTAGAACGTTTTTGCAGTGGC 60.223 45.455 0.46 0.00 41.68 5.01
654 657 0.102300 AGAACGTTTTTGCAGTGGCC 59.898 50.000 0.46 0.00 40.13 5.36
655 658 0.102300 GAACGTTTTTGCAGTGGCCT 59.898 50.000 3.32 0.00 40.13 5.19
656 659 0.102300 AACGTTTTTGCAGTGGCCTC 59.898 50.000 3.32 0.00 40.13 4.70
657 660 0.751643 ACGTTTTTGCAGTGGCCTCT 60.752 50.000 3.32 1.65 40.13 3.69
658 661 0.318107 CGTTTTTGCAGTGGCCTCTG 60.318 55.000 27.01 27.01 40.13 3.35
659 662 0.746659 GTTTTTGCAGTGGCCTCTGT 59.253 50.000 30.11 0.00 40.13 3.41
660 663 1.136891 GTTTTTGCAGTGGCCTCTGTT 59.863 47.619 30.11 0.00 40.13 3.16
661 664 2.356665 TTTTGCAGTGGCCTCTGTTA 57.643 45.000 30.11 19.42 40.13 2.41
662 665 2.356665 TTTGCAGTGGCCTCTGTTAA 57.643 45.000 30.11 23.09 40.13 2.01
663 666 2.356665 TTGCAGTGGCCTCTGTTAAA 57.643 45.000 30.11 20.72 40.13 1.52
664 667 2.356665 TGCAGTGGCCTCTGTTAAAA 57.643 45.000 30.11 12.59 40.13 1.52
665 668 2.660572 TGCAGTGGCCTCTGTTAAAAA 58.339 42.857 30.11 11.10 40.13 1.94
719 722 7.063898 CAGAGGGATTACAAAGCATCGTATATG 59.936 40.741 0.00 0.00 0.00 1.78
861 912 7.750229 TTCTGTTGAAAAGTAAGCAGATGAT 57.250 32.000 0.00 0.00 33.72 2.45
969 1043 1.636148 ACCATCCAAGCTGTGCAAAT 58.364 45.000 0.00 0.00 0.00 2.32
983 1057 1.340502 TGCAAATACCAATCGCTCCCA 60.341 47.619 0.00 0.00 0.00 4.37
1326 1421 4.589675 AAGCGGCGGAACCCCAAA 62.590 61.111 9.78 0.00 33.26 3.28
1680 1775 0.322816 TCCAGTTCTACGCCTACGGT 60.323 55.000 0.00 0.00 46.04 4.83
1854 1949 1.961394 CAGGGTAAGCTCTACGGCATA 59.039 52.381 0.00 0.00 34.17 3.14
1938 2033 0.884259 TGTTGACTGATGCCACCACG 60.884 55.000 0.00 0.00 0.00 4.94
1975 2070 4.572389 CAGCTTCTTGGTTTGCGTATATCT 59.428 41.667 0.00 0.00 0.00 1.98
1978 2073 6.647067 AGCTTCTTGGTTTGCGTATATCTATC 59.353 38.462 0.00 0.00 0.00 2.08
2030 2125 4.709397 AGCATCCGATTTTAATTGTTGGGA 59.291 37.500 0.00 0.00 0.00 4.37
2053 2148 4.705023 AGTATTTTTGACTGCGCCCTATTT 59.295 37.500 4.18 0.00 0.00 1.40
2056 2151 2.325583 TTGACTGCGCCCTATTTAGG 57.674 50.000 4.18 0.00 43.25 2.69
2214 2310 3.058016 TCCTTCAACGTCAAGGTAGTACG 60.058 47.826 20.39 0.00 41.28 3.67
2258 2355 3.454858 ACATCCAGGTTCATAGACCACT 58.545 45.455 0.00 0.00 42.35 4.00
2261 2358 5.487488 ACATCCAGGTTCATAGACCACTTAA 59.513 40.000 0.00 0.00 42.35 1.85
2263 2360 4.841813 TCCAGGTTCATAGACCACTTAACA 59.158 41.667 0.00 0.00 42.35 2.41
2278 2375 3.805971 ACTTAACAACGACTACAAGCACC 59.194 43.478 0.00 0.00 0.00 5.01
2384 2481 7.660112 TGTAGTAAACAGTCGGAAAGTTATCA 58.340 34.615 0.00 0.00 33.01 2.15
2418 2515 1.635663 GGGACCAACGCATCAGAACG 61.636 60.000 0.00 0.00 0.00 3.95
2423 2520 2.034879 AACGCATCAGAACGGCAGG 61.035 57.895 1.71 0.00 0.00 4.85
2511 2640 2.093447 CCAGTAGATCCACCCAAGACAC 60.093 54.545 0.00 0.00 0.00 3.67
2515 2644 0.034896 GATCCACCCAAGACACACGT 59.965 55.000 0.00 0.00 0.00 4.49
2560 2689 2.970324 GACAAACCTCCACGCGCA 60.970 61.111 5.73 0.00 0.00 6.09
2634 2763 6.005198 CCTTATTCCACCTATAGAGAGTCGT 58.995 44.000 0.00 0.00 0.00 4.34
2635 2764 6.490721 CCTTATTCCACCTATAGAGAGTCGTT 59.509 42.308 0.00 0.00 0.00 3.85
2668 2797 0.249868 TCTGAGCAGGACACAAACCG 60.250 55.000 0.00 0.00 0.00 4.44
2726 2859 2.037208 CCGGCAAGGGTTGGGATT 59.963 61.111 0.00 0.00 35.97 3.01
2780 2913 2.602568 AGGTAGACCGGCGGTTGT 60.603 61.111 34.58 24.95 42.08 3.32
2806 2939 1.376037 GGAGGCACGAGAAACCCTG 60.376 63.158 0.00 0.00 0.00 4.45
2851 2984 1.204312 GTCGCCAGTTCGTTTCTGC 59.796 57.895 0.00 0.00 0.00 4.26
2864 2997 3.866910 TCGTTTCTGCACGTAGACTTTTT 59.133 39.130 0.00 0.00 41.16 1.94
2919 3052 7.044181 TCCATAAACAAGTCAATGTTGCAAAA 58.956 30.769 0.00 0.00 42.49 2.44
2936 3069 3.574614 CAAAAACATTTACTCTGGCCCG 58.425 45.455 0.00 0.00 0.00 6.13
2937 3070 1.173913 AAACATTTACTCTGGCCCGC 58.826 50.000 0.00 0.00 0.00 6.13
2938 3071 0.037590 AACATTTACTCTGGCCCGCA 59.962 50.000 0.00 0.00 0.00 5.69
2940 3073 0.451783 CATTTACTCTGGCCCGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
2941 3074 1.024579 ATTTACTCTGGCCCGCAACG 61.025 55.000 0.00 0.00 0.00 4.10
2942 3075 4.752879 TACTCTGGCCCGCAACGC 62.753 66.667 0.00 0.00 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.564044 AAGTCGAGTCACTTATTTTAAGACG 57.436 36.000 0.00 0.00 34.70 4.18
8 9 6.978338 TCAGTACAAAGTCGAGTCACTTATT 58.022 36.000 0.00 2.93 35.45 1.40
9 10 6.570672 TCAGTACAAAGTCGAGTCACTTAT 57.429 37.500 0.00 4.10 35.45 1.73
10 11 6.381481 TTCAGTACAAAGTCGAGTCACTTA 57.619 37.500 0.00 0.00 35.45 2.24
11 12 4.913335 TCAGTACAAAGTCGAGTCACTT 57.087 40.909 0.00 3.11 38.30 3.16
12 13 4.793353 GCTTCAGTACAAAGTCGAGTCACT 60.793 45.833 0.00 0.00 0.00 3.41
13 14 3.425858 GCTTCAGTACAAAGTCGAGTCAC 59.574 47.826 0.00 0.00 0.00 3.67
14 15 3.318275 AGCTTCAGTACAAAGTCGAGTCA 59.682 43.478 0.00 0.00 0.00 3.41
15 16 3.903360 AGCTTCAGTACAAAGTCGAGTC 58.097 45.455 0.00 0.00 0.00 3.36
16 17 4.519730 ACTAGCTTCAGTACAAAGTCGAGT 59.480 41.667 0.00 9.47 0.00 4.18
17 18 5.049398 ACTAGCTTCAGTACAAAGTCGAG 57.951 43.478 0.00 9.03 0.00 4.04
18 19 5.936054 GTACTAGCTTCAGTACAAAGTCGA 58.064 41.667 18.08 0.00 46.72 4.20
27 28 7.013942 TGACTCAACTTTGTACTAGCTTCAGTA 59.986 37.037 0.00 0.00 0.00 2.74
28 29 6.163135 ACTCAACTTTGTACTAGCTTCAGT 57.837 37.500 0.00 0.00 0.00 3.41
29 30 6.144724 GTGACTCAACTTTGTACTAGCTTCAG 59.855 42.308 0.00 0.00 0.00 3.02
30 31 5.983720 GTGACTCAACTTTGTACTAGCTTCA 59.016 40.000 0.00 0.00 0.00 3.02
31 32 6.217294 AGTGACTCAACTTTGTACTAGCTTC 58.783 40.000 0.00 0.00 0.00 3.86
32 33 6.163135 AGTGACTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
33 34 5.793030 AGTGACTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
34 35 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
36 37 9.268268 CCAAATAAGTGACTCAACTTTGTACTA 57.732 33.333 0.00 0.00 40.77 1.82
37 38 7.228706 CCCAAATAAGTGACTCAACTTTGTACT 59.771 37.037 0.00 0.00 40.77 2.73
38 39 7.360361 CCCAAATAAGTGACTCAACTTTGTAC 58.640 38.462 0.00 0.00 40.77 2.90
39 40 6.488683 CCCCAAATAAGTGACTCAACTTTGTA 59.511 38.462 0.00 0.00 40.77 2.41
40 41 5.301805 CCCCAAATAAGTGACTCAACTTTGT 59.698 40.000 0.00 0.00 40.77 2.83
41 42 5.301805 ACCCCAAATAAGTGACTCAACTTTG 59.698 40.000 0.00 0.00 40.77 2.77
42 43 5.454966 ACCCCAAATAAGTGACTCAACTTT 58.545 37.500 0.00 0.00 40.77 2.66
43 44 5.061721 ACCCCAAATAAGTGACTCAACTT 57.938 39.130 0.00 0.00 42.89 2.66
44 45 4.724279 ACCCCAAATAAGTGACTCAACT 57.276 40.909 0.00 0.00 0.00 3.16
45 46 5.310451 TGTACCCCAAATAAGTGACTCAAC 58.690 41.667 0.00 0.00 0.00 3.18
46 47 5.570205 TGTACCCCAAATAAGTGACTCAA 57.430 39.130 0.00 0.00 0.00 3.02
47 48 5.570205 TTGTACCCCAAATAAGTGACTCA 57.430 39.130 0.00 0.00 0.00 3.41
48 49 6.002082 ACTTTGTACCCCAAATAAGTGACTC 58.998 40.000 0.00 0.00 42.02 3.36
49 50 5.948842 ACTTTGTACCCCAAATAAGTGACT 58.051 37.500 0.00 0.00 42.02 3.41
50 51 5.106830 CGACTTTGTACCCCAAATAAGTGAC 60.107 44.000 0.00 0.00 42.02 3.67
51 52 4.998672 CGACTTTGTACCCCAAATAAGTGA 59.001 41.667 0.00 0.00 42.02 3.41
52 53 4.998672 TCGACTTTGTACCCCAAATAAGTG 59.001 41.667 0.00 0.00 42.02 3.16
53 54 5.221783 ACTCGACTTTGTACCCCAAATAAGT 60.222 40.000 0.00 0.00 42.02 2.24
54 55 5.243207 ACTCGACTTTGTACCCCAAATAAG 58.757 41.667 0.00 0.00 42.02 1.73
55 56 5.221682 TGACTCGACTTTGTACCCCAAATAA 60.222 40.000 0.00 0.00 42.02 1.40
56 57 4.283978 TGACTCGACTTTGTACCCCAAATA 59.716 41.667 0.00 0.00 42.02 1.40
57 58 3.071892 TGACTCGACTTTGTACCCCAAAT 59.928 43.478 0.00 0.00 42.02 2.32
58 59 2.435069 TGACTCGACTTTGTACCCCAAA 59.565 45.455 0.00 0.00 40.71 3.28
59 60 2.040939 TGACTCGACTTTGTACCCCAA 58.959 47.619 0.00 0.00 0.00 4.12
60 61 1.342174 GTGACTCGACTTTGTACCCCA 59.658 52.381 0.00 0.00 0.00 4.96
61 62 1.617357 AGTGACTCGACTTTGTACCCC 59.383 52.381 0.00 0.00 0.00 4.95
62 63 3.382048 AAGTGACTCGACTTTGTACCC 57.618 47.619 0.00 0.00 31.92 3.69
63 64 6.128634 CCAAATAAGTGACTCGACTTTGTACC 60.129 42.308 0.00 0.00 37.38 3.34
64 65 6.128634 CCCAAATAAGTGACTCGACTTTGTAC 60.129 42.308 0.00 0.00 37.38 2.90
65 66 5.929992 CCCAAATAAGTGACTCGACTTTGTA 59.070 40.000 0.00 0.00 37.38 2.41
66 67 4.755123 CCCAAATAAGTGACTCGACTTTGT 59.245 41.667 0.00 0.00 37.38 2.83
67 68 4.154195 CCCCAAATAAGTGACTCGACTTTG 59.846 45.833 0.00 0.00 37.38 2.77
68 69 4.041198 TCCCCAAATAAGTGACTCGACTTT 59.959 41.667 0.00 0.00 37.38 2.66
69 70 3.581332 TCCCCAAATAAGTGACTCGACTT 59.419 43.478 0.00 0.00 39.54 3.01
70 71 3.056035 GTCCCCAAATAAGTGACTCGACT 60.056 47.826 0.00 0.00 0.00 4.18
71 72 3.259902 GTCCCCAAATAAGTGACTCGAC 58.740 50.000 0.00 0.00 0.00 4.20
72 73 2.094390 CGTCCCCAAATAAGTGACTCGA 60.094 50.000 0.00 0.00 0.00 4.04
73 74 2.268298 CGTCCCCAAATAAGTGACTCG 58.732 52.381 0.00 0.00 0.00 4.18
74 75 2.235402 TCCGTCCCCAAATAAGTGACTC 59.765 50.000 0.00 0.00 0.00 3.36
75 76 2.236395 CTCCGTCCCCAAATAAGTGACT 59.764 50.000 0.00 0.00 0.00 3.41
76 77 2.629051 CTCCGTCCCCAAATAAGTGAC 58.371 52.381 0.00 0.00 0.00 3.67
77 78 1.557832 CCTCCGTCCCCAAATAAGTGA 59.442 52.381 0.00 0.00 0.00 3.41
78 79 1.408266 CCCTCCGTCCCCAAATAAGTG 60.408 57.143 0.00 0.00 0.00 3.16
79 80 0.916809 CCCTCCGTCCCCAAATAAGT 59.083 55.000 0.00 0.00 0.00 2.24
80 81 1.141053 CTCCCTCCGTCCCCAAATAAG 59.859 57.143 0.00 0.00 0.00 1.73
81 82 1.209621 CTCCCTCCGTCCCCAAATAA 58.790 55.000 0.00 0.00 0.00 1.40
82 83 0.043637 ACTCCCTCCGTCCCCAAATA 59.956 55.000 0.00 0.00 0.00 1.40
83 84 0.043637 TACTCCCTCCGTCCCCAAAT 59.956 55.000 0.00 0.00 0.00 2.32
84 85 0.043637 ATACTCCCTCCGTCCCCAAA 59.956 55.000 0.00 0.00 0.00 3.28
85 86 0.043637 AATACTCCCTCCGTCCCCAA 59.956 55.000 0.00 0.00 0.00 4.12
86 87 0.043637 AAATACTCCCTCCGTCCCCA 59.956 55.000 0.00 0.00 0.00 4.96
87 88 0.757512 GAAATACTCCCTCCGTCCCC 59.242 60.000 0.00 0.00 0.00 4.81
88 89 1.790818 AGAAATACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
89 90 5.323581 ACTATAGAAATACTCCCTCCGTCC 58.676 45.833 6.78 0.00 0.00 4.79
90 91 7.282901 GGATACTATAGAAATACTCCCTCCGTC 59.717 44.444 6.78 0.00 0.00 4.79
91 92 7.118060 GGATACTATAGAAATACTCCCTCCGT 58.882 42.308 6.78 0.00 0.00 4.69
92 93 7.571080 GGATACTATAGAAATACTCCCTCCG 57.429 44.000 6.78 0.00 0.00 4.63
168 169 6.198650 TCCGTTCTATAATTCTTGTCGTGA 57.801 37.500 0.00 0.00 0.00 4.35
184 185 5.163012 TGGATATAGTTACTCCCTCCGTTCT 60.163 44.000 0.00 0.00 0.00 3.01
186 187 5.070823 TGGATATAGTTACTCCCTCCGTT 57.929 43.478 0.00 0.00 0.00 4.44
189 190 7.554959 TGAAATGGATATAGTTACTCCCTCC 57.445 40.000 0.00 0.00 0.00 4.30
282 285 6.816140 CCACCAATTTCCAAACCACATAATAC 59.184 38.462 0.00 0.00 0.00 1.89
297 300 4.058721 AGCAACTTTGACCACCAATTTC 57.941 40.909 0.00 0.00 34.23 2.17
323 326 3.031013 CCCTGAAAACAAACACCCTCTT 58.969 45.455 0.00 0.00 0.00 2.85
324 327 2.243736 TCCCTGAAAACAAACACCCTCT 59.756 45.455 0.00 0.00 0.00 3.69
325 328 2.361119 GTCCCTGAAAACAAACACCCTC 59.639 50.000 0.00 0.00 0.00 4.30
326 329 2.024369 AGTCCCTGAAAACAAACACCCT 60.024 45.455 0.00 0.00 0.00 4.34
327 330 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
328 331 5.784578 ATAAGTCCCTGAAAACAAACACC 57.215 39.130 0.00 0.00 0.00 4.16
329 332 6.801575 TCAATAAGTCCCTGAAAACAAACAC 58.198 36.000 0.00 0.00 0.00 3.32
330 333 7.595819 ATCAATAAGTCCCTGAAAACAAACA 57.404 32.000 0.00 0.00 0.00 2.83
331 334 8.887036 AAATCAATAAGTCCCTGAAAACAAAC 57.113 30.769 0.00 0.00 0.00 2.93
333 336 8.802267 CCTAAATCAATAAGTCCCTGAAAACAA 58.198 33.333 0.00 0.00 0.00 2.83
334 337 7.396055 CCCTAAATCAATAAGTCCCTGAAAACA 59.604 37.037 0.00 0.00 0.00 2.83
335 338 7.614192 TCCCTAAATCAATAAGTCCCTGAAAAC 59.386 37.037 0.00 0.00 0.00 2.43
336 339 7.614192 GTCCCTAAATCAATAAGTCCCTGAAAA 59.386 37.037 0.00 0.00 0.00 2.29
337 340 7.036863 AGTCCCTAAATCAATAAGTCCCTGAAA 60.037 37.037 0.00 0.00 0.00 2.69
338 341 6.447084 AGTCCCTAAATCAATAAGTCCCTGAA 59.553 38.462 0.00 0.00 0.00 3.02
339 342 5.970640 AGTCCCTAAATCAATAAGTCCCTGA 59.029 40.000 0.00 0.00 0.00 3.86
340 343 6.253946 AGTCCCTAAATCAATAAGTCCCTG 57.746 41.667 0.00 0.00 0.00 4.45
341 344 6.910259 AAGTCCCTAAATCAATAAGTCCCT 57.090 37.500 0.00 0.00 0.00 4.20
342 345 9.470399 TTTTAAGTCCCTAAATCAATAAGTCCC 57.530 33.333 0.00 0.00 0.00 4.46
366 369 6.992235 TGGATGGGATTTATAGGGACTTTTT 58.008 36.000 0.00 0.00 41.75 1.94
367 370 6.606241 TGGATGGGATTTATAGGGACTTTT 57.394 37.500 0.00 0.00 41.75 2.27
368 371 6.606241 TTGGATGGGATTTATAGGGACTTT 57.394 37.500 0.00 0.00 41.75 2.66
369 372 6.373759 GTTTGGATGGGATTTATAGGGACTT 58.626 40.000 0.00 0.00 41.75 3.01
370 373 5.162980 GGTTTGGATGGGATTTATAGGGACT 60.163 44.000 0.00 0.00 46.37 3.85
371 374 5.077564 GGTTTGGATGGGATTTATAGGGAC 58.922 45.833 0.00 0.00 0.00 4.46
372 375 4.734503 TGGTTTGGATGGGATTTATAGGGA 59.265 41.667 0.00 0.00 0.00 4.20
373 376 5.073437 TGGTTTGGATGGGATTTATAGGG 57.927 43.478 0.00 0.00 0.00 3.53
374 377 6.382570 TGTTTGGTTTGGATGGGATTTATAGG 59.617 38.462 0.00 0.00 0.00 2.57
375 378 7.416964 TGTTTGGTTTGGATGGGATTTATAG 57.583 36.000 0.00 0.00 0.00 1.31
376 379 6.382570 CCTGTTTGGTTTGGATGGGATTTATA 59.617 38.462 0.00 0.00 0.00 0.98
377 380 5.189539 CCTGTTTGGTTTGGATGGGATTTAT 59.810 40.000 0.00 0.00 0.00 1.40
378 381 4.530161 CCTGTTTGGTTTGGATGGGATTTA 59.470 41.667 0.00 0.00 0.00 1.40
379 382 3.327464 CCTGTTTGGTTTGGATGGGATTT 59.673 43.478 0.00 0.00 0.00 2.17
380 383 2.905736 CCTGTTTGGTTTGGATGGGATT 59.094 45.455 0.00 0.00 0.00 3.01
381 384 2.111613 TCCTGTTTGGTTTGGATGGGAT 59.888 45.455 0.00 0.00 37.07 3.85
382 385 1.501170 TCCTGTTTGGTTTGGATGGGA 59.499 47.619 0.00 0.00 37.07 4.37
383 386 1.895131 CTCCTGTTTGGTTTGGATGGG 59.105 52.381 0.00 0.00 37.07 4.00
384 387 1.895131 CCTCCTGTTTGGTTTGGATGG 59.105 52.381 0.00 0.00 37.07 3.51
385 388 1.895131 CCCTCCTGTTTGGTTTGGATG 59.105 52.381 0.00 0.00 37.07 3.51
386 389 1.786441 TCCCTCCTGTTTGGTTTGGAT 59.214 47.619 0.00 0.00 37.07 3.41
387 390 1.133606 GTCCCTCCTGTTTGGTTTGGA 60.134 52.381 0.00 0.00 37.07 3.53
388 391 1.133482 AGTCCCTCCTGTTTGGTTTGG 60.133 52.381 0.00 0.00 37.07 3.28
389 392 2.364972 AGTCCCTCCTGTTTGGTTTG 57.635 50.000 0.00 0.00 37.07 2.93
390 393 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
391 394 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
392 395 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
393 396 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
394 397 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
395 398 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
396 399 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
397 400 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
398 401 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
399 402 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
400 403 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
401 404 6.685873 GCACTTTAAGTCCCTATAAGTCCCTC 60.686 46.154 0.00 0.00 0.00 4.30
402 405 5.130643 GCACTTTAAGTCCCTATAAGTCCCT 59.869 44.000 0.00 0.00 0.00 4.20
403 406 5.366460 GCACTTTAAGTCCCTATAAGTCCC 58.634 45.833 0.00 0.00 0.00 4.46
404 407 5.048507 CGCACTTTAAGTCCCTATAAGTCC 58.951 45.833 0.00 0.00 0.00 3.85
405 408 4.507021 GCGCACTTTAAGTCCCTATAAGTC 59.493 45.833 0.30 0.00 0.00 3.01
406 409 4.081309 TGCGCACTTTAAGTCCCTATAAGT 60.081 41.667 5.66 0.00 0.00 2.24
407 410 4.439057 TGCGCACTTTAAGTCCCTATAAG 58.561 43.478 5.66 0.00 0.00 1.73
408 411 4.475051 TGCGCACTTTAAGTCCCTATAA 57.525 40.909 5.66 0.00 0.00 0.98
409 412 4.682778 ATGCGCACTTTAAGTCCCTATA 57.317 40.909 14.90 0.00 0.00 1.31
410 413 3.560636 ATGCGCACTTTAAGTCCCTAT 57.439 42.857 14.90 0.00 0.00 2.57
411 414 3.343941 AATGCGCACTTTAAGTCCCTA 57.656 42.857 14.90 0.00 0.00 3.53
412 415 2.200373 AATGCGCACTTTAAGTCCCT 57.800 45.000 14.90 0.00 0.00 4.20
413 416 2.595386 CAAATGCGCACTTTAAGTCCC 58.405 47.619 14.90 0.00 0.00 4.46
414 417 2.595386 CCAAATGCGCACTTTAAGTCC 58.405 47.619 14.90 0.00 0.00 3.85
415 418 2.227865 TCCCAAATGCGCACTTTAAGTC 59.772 45.455 14.90 0.00 0.00 3.01
416 419 2.030274 GTCCCAAATGCGCACTTTAAGT 60.030 45.455 14.90 0.00 0.00 2.24
417 420 2.228822 AGTCCCAAATGCGCACTTTAAG 59.771 45.455 14.90 9.34 0.00 1.85
418 421 2.235016 AGTCCCAAATGCGCACTTTAA 58.765 42.857 14.90 0.00 0.00 1.52
419 422 1.904287 AGTCCCAAATGCGCACTTTA 58.096 45.000 14.90 0.00 0.00 1.85
420 423 1.039856 AAGTCCCAAATGCGCACTTT 58.960 45.000 14.90 12.11 0.00 2.66
421 424 1.904287 TAAGTCCCAAATGCGCACTT 58.096 45.000 14.90 4.62 0.00 3.16
422 425 1.745087 CATAAGTCCCAAATGCGCACT 59.255 47.619 14.90 0.00 0.00 4.40
423 426 1.742831 TCATAAGTCCCAAATGCGCAC 59.257 47.619 14.90 0.00 0.00 5.34
424 427 2.121291 TCATAAGTCCCAAATGCGCA 57.879 45.000 14.96 14.96 0.00 6.09
425 428 3.502191 TTTCATAAGTCCCAAATGCGC 57.498 42.857 0.00 0.00 0.00 6.09
426 429 7.026631 TCTTATTTCATAAGTCCCAAATGCG 57.973 36.000 3.93 0.00 42.21 4.73
427 430 9.468532 GAATCTTATTTCATAAGTCCCAAATGC 57.531 33.333 3.93 0.00 42.21 3.56
430 433 9.973661 TGAGAATCTTATTTCATAAGTCCCAAA 57.026 29.630 3.93 0.00 42.21 3.28
431 434 9.973661 TTGAGAATCTTATTTCATAAGTCCCAA 57.026 29.630 3.93 0.00 42.21 4.12
432 435 9.618890 CTTGAGAATCTTATTTCATAAGTCCCA 57.381 33.333 3.93 0.00 42.21 4.37
433 436 9.061435 CCTTGAGAATCTTATTTCATAAGTCCC 57.939 37.037 3.93 0.00 42.21 4.46
434 437 9.838339 TCCTTGAGAATCTTATTTCATAAGTCC 57.162 33.333 3.93 0.00 42.21 3.85
436 439 9.844257 CCTCCTTGAGAATCTTATTTCATAAGT 57.156 33.333 3.93 0.00 42.21 2.24
437 440 9.282569 CCCTCCTTGAGAATCTTATTTCATAAG 57.717 37.037 0.00 0.00 42.78 1.73
438 441 9.003145 TCCCTCCTTGAGAATCTTATTTCATAA 57.997 33.333 0.00 0.00 34.92 1.90
439 442 8.432805 GTCCCTCCTTGAGAATCTTATTTCATA 58.567 37.037 0.00 0.00 34.92 2.15
440 443 7.128573 AGTCCCTCCTTGAGAATCTTATTTCAT 59.871 37.037 0.00 0.00 34.92 2.57
441 444 6.445139 AGTCCCTCCTTGAGAATCTTATTTCA 59.555 38.462 0.00 0.00 34.92 2.69
442 445 6.894682 AGTCCCTCCTTGAGAATCTTATTTC 58.105 40.000 0.00 0.00 34.92 2.17
443 446 6.899892 AGTCCCTCCTTGAGAATCTTATTT 57.100 37.500 0.00 0.00 34.92 1.40
444 447 6.899892 AAGTCCCTCCTTGAGAATCTTATT 57.100 37.500 0.00 0.00 34.92 1.40
445 448 9.320295 CTATAAGTCCCTCCTTGAGAATCTTAT 57.680 37.037 0.00 0.00 34.16 1.73
446 449 7.730784 CCTATAAGTCCCTCCTTGAGAATCTTA 59.269 40.741 0.00 0.00 34.92 2.10
447 450 6.556874 CCTATAAGTCCCTCCTTGAGAATCTT 59.443 42.308 0.00 0.00 34.92 2.40
448 451 6.081356 CCTATAAGTCCCTCCTTGAGAATCT 58.919 44.000 0.00 0.00 34.92 2.40
449 452 5.247337 CCCTATAAGTCCCTCCTTGAGAATC 59.753 48.000 0.00 0.00 0.00 2.52
450 453 5.102609 TCCCTATAAGTCCCTCCTTGAGAAT 60.103 44.000 0.00 0.00 0.00 2.40
451 454 4.234458 TCCCTATAAGTCCCTCCTTGAGAA 59.766 45.833 0.00 0.00 0.00 2.87
452 455 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
453 456 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
454 457 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
455 458 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
456 459 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
457 460 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
458 461 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
459 462 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
460 463 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
461 464 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
470 473 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
501 504 7.177744 TGTTTGGTTTCTGGGACTTATAAATCC 59.822 37.037 4.30 4.30 0.00 3.01
502 505 8.117813 TGTTTGGTTTCTGGGACTTATAAATC 57.882 34.615 0.00 0.00 0.00 2.17
503 506 7.178451 CCTGTTTGGTTTCTGGGACTTATAAAT 59.822 37.037 0.00 0.00 0.00 1.40
504 507 6.492087 CCTGTTTGGTTTCTGGGACTTATAAA 59.508 38.462 0.00 0.00 0.00 1.40
505 508 6.007703 CCTGTTTGGTTTCTGGGACTTATAA 58.992 40.000 0.00 0.00 0.00 0.98
506 509 5.566469 CCTGTTTGGTTTCTGGGACTTATA 58.434 41.667 0.00 0.00 0.00 0.98
507 510 4.407365 CCTGTTTGGTTTCTGGGACTTAT 58.593 43.478 0.00 0.00 0.00 1.73
508 511 3.827722 CCTGTTTGGTTTCTGGGACTTA 58.172 45.455 0.00 0.00 0.00 2.24
509 512 2.666317 CCTGTTTGGTTTCTGGGACTT 58.334 47.619 0.00 0.00 0.00 3.01
510 513 2.364972 CCTGTTTGGTTTCTGGGACT 57.635 50.000 0.00 0.00 0.00 3.85
521 524 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
522 525 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
523 526 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
524 527 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
525 528 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
526 529 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
527 530 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
528 531 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
529 532 4.567116 CCCAAGTCCCTAAAAAGTCCCTAC 60.567 50.000 0.00 0.00 0.00 3.18
530 533 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
531 534 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
532 535 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
533 536 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
534 537 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
535 538 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
536 539 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
537 540 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
538 541 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
574 577 9.403583 TGTTTGGTTCATAAGTTCTAAGACTTT 57.596 29.630 0.00 0.00 40.24 2.66
575 578 8.974060 TGTTTGGTTCATAAGTTCTAAGACTT 57.026 30.769 0.00 0.00 42.27 3.01
576 579 7.661847 CCTGTTTGGTTCATAAGTTCTAAGACT 59.338 37.037 0.00 0.00 0.00 3.24
577 580 7.094762 CCCTGTTTGGTTCATAAGTTCTAAGAC 60.095 40.741 0.00 0.00 0.00 3.01
578 581 6.940298 CCCTGTTTGGTTCATAAGTTCTAAGA 59.060 38.462 0.00 0.00 0.00 2.10
579 582 6.349363 GCCCTGTTTGGTTCATAAGTTCTAAG 60.349 42.308 0.00 0.00 0.00 2.18
580 583 5.475564 GCCCTGTTTGGTTCATAAGTTCTAA 59.524 40.000 0.00 0.00 0.00 2.10
581 584 5.007682 GCCCTGTTTGGTTCATAAGTTCTA 58.992 41.667 0.00 0.00 0.00 2.10
582 585 3.826729 GCCCTGTTTGGTTCATAAGTTCT 59.173 43.478 0.00 0.00 0.00 3.01
583 586 3.056821 GGCCCTGTTTGGTTCATAAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
584 587 2.897326 GGCCCTGTTTGGTTCATAAGTT 59.103 45.455 0.00 0.00 0.00 2.66
585 588 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
586 589 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
587 590 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
588 591 3.332485 ACTTAGGCCCTGTTTGGTTCATA 59.668 43.478 0.00 0.00 0.00 2.15
589 592 2.110011 ACTTAGGCCCTGTTTGGTTCAT 59.890 45.455 0.00 0.00 0.00 2.57
590 593 1.497286 ACTTAGGCCCTGTTTGGTTCA 59.503 47.619 0.00 0.00 0.00 3.18
591 594 2.287977 ACTTAGGCCCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
592 595 2.714793 AGTACTTAGGCCCTGTTTGGTT 59.285 45.455 0.00 0.00 0.00 3.67
593 596 2.345560 AGTACTTAGGCCCTGTTTGGT 58.654 47.619 0.00 0.00 0.00 3.67
594 597 3.262405 TGTAGTACTTAGGCCCTGTTTGG 59.738 47.826 0.00 0.00 0.00 3.28
595 598 4.251268 GTGTAGTACTTAGGCCCTGTTTG 58.749 47.826 0.00 0.00 0.00 2.93
596 599 3.262660 GGTGTAGTACTTAGGCCCTGTTT 59.737 47.826 0.00 0.00 0.00 2.83
597 600 2.836372 GGTGTAGTACTTAGGCCCTGTT 59.164 50.000 0.00 0.00 0.00 3.16
598 601 2.464782 GGTGTAGTACTTAGGCCCTGT 58.535 52.381 0.00 0.00 0.00 4.00
599 602 1.761198 GGGTGTAGTACTTAGGCCCTG 59.239 57.143 0.00 0.00 0.00 4.45
600 603 1.650166 AGGGTGTAGTACTTAGGCCCT 59.350 52.381 16.50 16.50 39.95 5.19
601 604 2.037901 GAGGGTGTAGTACTTAGGCCC 58.962 57.143 0.00 8.44 35.04 5.80
602 605 2.694109 CAGAGGGTGTAGTACTTAGGCC 59.306 54.545 0.00 0.00 0.00 5.19
603 606 3.363627 ACAGAGGGTGTAGTACTTAGGC 58.636 50.000 0.00 0.00 37.75 3.93
604 607 5.014858 TGAACAGAGGGTGTAGTACTTAGG 58.985 45.833 0.00 0.00 39.03 2.69
605 608 5.475909 TGTGAACAGAGGGTGTAGTACTTAG 59.524 44.000 0.00 0.00 39.03 2.18
606 609 5.387788 TGTGAACAGAGGGTGTAGTACTTA 58.612 41.667 0.00 0.00 39.03 2.24
609 612 4.595762 TTGTGAACAGAGGGTGTAGTAC 57.404 45.455 0.00 0.00 39.03 2.73
629 632 5.040635 CCACTGCAAAAACGTTCTACATTT 58.959 37.500 0.00 0.00 0.00 2.32
637 640 0.102300 GAGGCCACTGCAAAAACGTT 59.898 50.000 5.01 0.00 40.13 3.99
664 667 6.764560 ACTGTTCACTAATGTAGGACGTTTTT 59.235 34.615 0.00 0.00 0.00 1.94
665 668 6.202188 CACTGTTCACTAATGTAGGACGTTTT 59.798 38.462 0.00 0.00 0.00 2.43
666 669 5.694910 CACTGTTCACTAATGTAGGACGTTT 59.305 40.000 0.00 0.00 0.00 3.60
667 670 5.010314 TCACTGTTCACTAATGTAGGACGTT 59.990 40.000 0.00 0.00 0.00 3.99
668 671 4.521639 TCACTGTTCACTAATGTAGGACGT 59.478 41.667 0.00 0.00 0.00 4.34
669 672 5.055642 TCACTGTTCACTAATGTAGGACG 57.944 43.478 0.00 0.00 0.00 4.79
670 673 6.220930 TGTTCACTGTTCACTAATGTAGGAC 58.779 40.000 0.00 0.00 0.00 3.85
671 674 6.266786 TCTGTTCACTGTTCACTAATGTAGGA 59.733 38.462 0.00 0.00 0.00 2.94
672 675 6.455647 TCTGTTCACTGTTCACTAATGTAGG 58.544 40.000 0.00 0.00 0.00 3.18
673 676 6.587990 CCTCTGTTCACTGTTCACTAATGTAG 59.412 42.308 0.00 0.00 0.00 2.74
674 677 6.455647 CCTCTGTTCACTGTTCACTAATGTA 58.544 40.000 0.00 0.00 0.00 2.29
675 678 5.300752 CCTCTGTTCACTGTTCACTAATGT 58.699 41.667 0.00 0.00 0.00 2.71
676 679 4.692625 CCCTCTGTTCACTGTTCACTAATG 59.307 45.833 0.00 0.00 0.00 1.90
677 680 4.593206 TCCCTCTGTTCACTGTTCACTAAT 59.407 41.667 0.00 0.00 0.00 1.73
678 681 3.964688 TCCCTCTGTTCACTGTTCACTAA 59.035 43.478 0.00 0.00 0.00 2.24
679 682 3.572642 TCCCTCTGTTCACTGTTCACTA 58.427 45.455 0.00 0.00 0.00 2.74
680 683 2.398588 TCCCTCTGTTCACTGTTCACT 58.601 47.619 0.00 0.00 0.00 3.41
681 684 2.910688 TCCCTCTGTTCACTGTTCAC 57.089 50.000 0.00 0.00 0.00 3.18
682 685 4.346709 TGTAATCCCTCTGTTCACTGTTCA 59.653 41.667 0.00 0.00 0.00 3.18
683 686 4.894784 TGTAATCCCTCTGTTCACTGTTC 58.105 43.478 0.00 0.00 0.00 3.18
719 722 2.829741 ACTGTCTTCACTCTTCAGGC 57.170 50.000 0.00 0.00 0.00 4.85
764 778 8.896744 ACGGAATAATGCATATGGAGAATATTG 58.103 33.333 0.00 6.67 28.26 1.90
766 780 8.049117 ACACGGAATAATGCATATGGAGAATAT 58.951 33.333 0.00 0.02 31.14 1.28
767 781 7.334171 CACACGGAATAATGCATATGGAGAATA 59.666 37.037 0.00 0.00 0.00 1.75
861 912 3.953612 ACTTGTTCTGCAGGTGATCAAAA 59.046 39.130 15.13 0.00 35.98 2.44
969 1043 0.108520 GTTCGTGGGAGCGATTGGTA 60.109 55.000 0.00 0.00 40.76 3.25
983 1057 1.068434 CCATTGGTGGCTTTTGTTCGT 59.932 47.619 0.00 0.00 39.01 3.85
1182 1277 0.179161 ACGCGAGGATGAAGTCGAAG 60.179 55.000 15.93 0.00 38.50 3.79
1553 1648 2.507102 CGAAGCTGATGACGCCGT 60.507 61.111 0.00 0.00 0.00 5.68
1605 1700 2.437359 AGCGTCCGGTAGTAGCGT 60.437 61.111 19.45 0.00 37.40 5.07
1699 1794 0.803117 TCGAAGAGGCTGACGTACTG 59.197 55.000 0.00 0.00 0.00 2.74
1839 1934 5.289595 CAGACAAATATGCCGTAGAGCTTA 58.710 41.667 0.00 0.00 0.00 3.09
1938 2033 5.169295 CAAGAAGCTGTGGGTAACTAGTAC 58.831 45.833 0.00 0.00 0.00 2.73
2030 2125 2.200373 AGGGCGCAGTCAAAAATACT 57.800 45.000 10.83 0.00 0.00 2.12
2125 2220 6.038714 GGGCTAGAGAAGTTATGGATTTGTTG 59.961 42.308 0.00 0.00 0.00 3.33
2126 2221 6.069381 AGGGCTAGAGAAGTTATGGATTTGTT 60.069 38.462 0.00 0.00 0.00 2.83
2127 2222 5.430089 AGGGCTAGAGAAGTTATGGATTTGT 59.570 40.000 0.00 0.00 0.00 2.83
2193 2288 3.058016 TCGTACTACCTTGACGTTGAAGG 60.058 47.826 20.34 20.34 44.94 3.46
2258 2355 2.796031 CGGTGCTTGTAGTCGTTGTTAA 59.204 45.455 0.00 0.00 0.00 2.01
2261 2358 0.599204 CCGGTGCTTGTAGTCGTTGT 60.599 55.000 0.00 0.00 0.00 3.32
2263 2360 0.038526 CTCCGGTGCTTGTAGTCGTT 60.039 55.000 0.00 0.00 0.00 3.85
2384 2481 0.846693 GTCCCATGGGGTCTTAGCAT 59.153 55.000 30.93 0.00 44.74 3.79
2423 2520 2.903079 CTTCTTTTCATCGGCGGCGC 62.903 60.000 28.25 26.17 0.00 6.53
2504 2633 3.531982 GATTTGTTCGACGTGTGTCTTG 58.468 45.455 0.00 0.00 43.21 3.02
2511 2640 2.073056 TCATGGGATTTGTTCGACGTG 58.927 47.619 0.00 0.00 0.00 4.49
2515 2644 3.741075 CGGATCTCATGGGATTTGTTCGA 60.741 47.826 10.06 0.00 0.00 3.71
2560 2689 1.550524 TGTTTCTAGCATCGCCAGAGT 59.449 47.619 0.00 0.00 0.00 3.24
2634 2763 1.153765 CAGAGATGCGAGGCGACAA 60.154 57.895 0.00 0.00 0.00 3.18
2635 2764 1.997928 CTCAGAGATGCGAGGCGACA 61.998 60.000 0.00 0.00 0.00 4.35
2787 2920 1.841556 AGGGTTTCTCGTGCCTCCA 60.842 57.895 0.00 0.00 0.00 3.86
2834 2967 1.227409 TGCAGAAACGAACTGGCGA 60.227 52.632 0.00 0.00 36.09 5.54
2844 2977 6.520792 TCTAAAAAGTCTACGTGCAGAAAC 57.479 37.500 0.00 0.00 0.00 2.78
2851 2984 6.271566 GGGGACTATCTAAAAAGTCTACGTG 58.728 44.000 0.00 0.00 41.53 4.49
2864 2997 5.439059 AGTTTAGAGGAAGGGGGACTATCTA 59.561 44.000 0.00 0.00 0.00 1.98
2919 3052 0.037590 TGCGGGCCAGAGTAAATGTT 59.962 50.000 7.23 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.