Multiple sequence alignment - TraesCS1B01G157800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G157800 chr1B 100.000 3006 0 0 1 3006 268101294 268104299 0.000000e+00 5552.0
1 TraesCS1B01G157800 chr4A 97.235 2351 54 8 594 2936 651355880 651358227 0.000000e+00 3971.0
2 TraesCS1B01G157800 chr4A 83.186 1475 191 25 764 2223 9048508 9047076 0.000000e+00 1297.0
3 TraesCS1B01G157800 chr4A 85.109 732 83 20 2221 2936 8981437 8980716 0.000000e+00 725.0
4 TraesCS1B01G157800 chr4A 87.167 600 69 6 1556 2152 9051175 9050581 0.000000e+00 675.0
5 TraesCS1B01G157800 chr4A 85.906 447 46 11 2141 2572 9049249 9048805 7.590000e-126 460.0
6 TraesCS1B01G157800 chr4A 100.000 79 0 0 2928 3006 651360823 651360901 2.410000e-31 147.0
7 TraesCS1B01G157800 chr4A 97.468 79 2 0 2928 3006 8966782 8966704 5.230000e-28 135.0
8 TraesCS1B01G157800 chr3A 95.669 1316 44 8 1631 2936 14278531 14279843 0.000000e+00 2102.0
9 TraesCS1B01G157800 chr3A 94.274 1013 37 10 584 1589 14277532 14278530 0.000000e+00 1530.0
10 TraesCS1B01G157800 chr3A 86.667 300 21 8 1322 1620 35090968 35090687 6.260000e-82 315.0
11 TraesCS1B01G157800 chr1A 95.517 1316 46 8 1631 2936 540202070 540203382 0.000000e+00 2091.0
12 TraesCS1B01G157800 chr1A 96.380 801 25 3 790 1589 540201272 540202069 0.000000e+00 1315.0
13 TraesCS1B01G157800 chr5D 85.288 972 110 15 1251 2210 537912518 537911568 0.000000e+00 972.0
14 TraesCS1B01G157800 chr5D 83.571 420 63 5 20 435 216159703 216159286 3.630000e-104 388.0
15 TraesCS1B01G157800 chr2B 86.243 567 71 4 1650 2212 38258038 38257475 2.560000e-170 608.0
16 TraesCS1B01G157800 chr2B 83.621 464 71 4 20 479 345458646 345458184 5.950000e-117 431.0
17 TraesCS1B01G157800 chr2B 85.065 154 22 1 1156 1308 88855944 88856097 4.010000e-34 156.0
18 TraesCS1B01G157800 chr7A 86.813 546 63 7 1650 2186 39482733 39483278 4.290000e-168 601.0
19 TraesCS1B01G157800 chr7A 87.013 154 19 1 1156 1308 39482263 39482416 3.980000e-39 172.0
20 TraesCS1B01G157800 chr7A 86.452 155 18 3 1156 1308 576089788 576089941 1.850000e-37 167.0
21 TraesCS1B01G157800 chr4B 86.630 546 64 7 1650 2186 475798705 475798160 1.990000e-166 595.0
22 TraesCS1B01G157800 chrUn 85.531 546 70 6 1650 2186 309100840 309101385 2.020000e-156 562.0
23 TraesCS1B01G157800 chrUn 85.531 546 70 6 1650 2186 309112357 309111812 2.020000e-156 562.0
24 TraesCS1B01G157800 chrUn 86.869 297 20 8 1322 1617 309100569 309100847 6.260000e-82 315.0
25 TraesCS1B01G157800 chrUn 86.667 300 21 8 1322 1620 309112628 309112347 6.260000e-82 315.0
26 TraesCS1B01G157800 chrUn 95.000 60 3 0 2928 2987 115539565 115539624 8.870000e-16 95.3
27 TraesCS1B01G157800 chr6B 84.513 452 61 8 28 477 681080011 681080455 3.560000e-119 438.0
28 TraesCS1B01G157800 chr1D 83.261 460 59 10 31 479 211620261 211619809 1.000000e-109 407.0
29 TraesCS1B01G157800 chr1D 95.000 60 3 0 2928 2987 332606013 332606072 8.870000e-16 95.3
30 TraesCS1B01G157800 chr6A 82.857 455 61 12 38 482 8790201 8790648 2.810000e-105 392.0
31 TraesCS1B01G157800 chr2D 82.910 433 68 5 56 482 178696126 178696558 4.700000e-103 385.0
32 TraesCS1B01G157800 chr2D 87.755 294 34 2 190 482 349588322 349588030 2.870000e-90 342.0
33 TraesCS1B01G157800 chr2D 95.000 60 3 0 2928 2987 33883776 33883717 8.870000e-16 95.3
34 TraesCS1B01G157800 chr4D 82.817 355 57 4 128 479 441831666 441832019 6.260000e-82 315.0
35 TraesCS1B01G157800 chr4D 95.000 60 3 0 2928 2987 150721238 150721179 8.870000e-16 95.3
36 TraesCS1B01G157800 chr5A 93.365 211 12 2 1411 1620 637184905 637184696 8.090000e-81 311.0
37 TraesCS1B01G157800 chr5A 82.353 153 17 6 1156 1308 637185165 637185023 1.130000e-24 124.0
38 TraesCS1B01G157800 chr3D 88.115 244 28 1 238 480 613620984 613620741 3.790000e-74 289.0
39 TraesCS1B01G157800 chr3D 95.000 60 3 0 2928 2987 22074553 22074612 8.870000e-16 95.3
40 TraesCS1B01G157800 chr2A 79.942 344 65 4 49 390 628067193 628067534 1.790000e-62 250.0
41 TraesCS1B01G157800 chr3B 85.714 154 21 1 1156 1308 491823179 491823026 8.620000e-36 161.0
42 TraesCS1B01G157800 chr3B 86.813 91 12 0 31 121 13050337 13050247 5.300000e-18 102.0
43 TraesCS1B01G157800 chr7D 95.000 60 3 0 2928 2987 138342456 138342397 8.870000e-16 95.3
44 TraesCS1B01G157800 chr6D 95.000 60 3 0 2928 2987 265171320 265171379 8.870000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G157800 chr1B 268101294 268104299 3005 False 5552.000000 5552 100.000000 1 3006 1 chr1B.!!$F1 3005
1 TraesCS1B01G157800 chr4A 651355880 651360901 5021 False 2059.000000 3971 98.617500 594 3006 2 chr4A.!!$F1 2412
2 TraesCS1B01G157800 chr4A 9047076 9051175 4099 True 810.666667 1297 85.419667 764 2572 3 chr4A.!!$R3 1808
3 TraesCS1B01G157800 chr4A 8980716 8981437 721 True 725.000000 725 85.109000 2221 2936 1 chr4A.!!$R2 715
4 TraesCS1B01G157800 chr3A 14277532 14279843 2311 False 1816.000000 2102 94.971500 584 2936 2 chr3A.!!$F1 2352
5 TraesCS1B01G157800 chr1A 540201272 540203382 2110 False 1703.000000 2091 95.948500 790 2936 2 chr1A.!!$F1 2146
6 TraesCS1B01G157800 chr5D 537911568 537912518 950 True 972.000000 972 85.288000 1251 2210 1 chr5D.!!$R2 959
7 TraesCS1B01G157800 chr2B 38257475 38258038 563 True 608.000000 608 86.243000 1650 2212 1 chr2B.!!$R1 562
8 TraesCS1B01G157800 chr7A 39482263 39483278 1015 False 386.500000 601 86.913000 1156 2186 2 chr7A.!!$F2 1030
9 TraesCS1B01G157800 chr4B 475798160 475798705 545 True 595.000000 595 86.630000 1650 2186 1 chr4B.!!$R1 536
10 TraesCS1B01G157800 chrUn 309100569 309101385 816 False 438.500000 562 86.200000 1322 2186 2 chrUn.!!$F2 864
11 TraesCS1B01G157800 chrUn 309111812 309112628 816 True 438.500000 562 86.099000 1322 2186 2 chrUn.!!$R1 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.028770 CGCAGCAGGAAACGTGAAAA 59.971 50.0 0.00 0.00 0.0 2.29 F
137 138 0.031111 TATAGCCAGGGCACTGACCT 60.031 55.0 20.22 15.63 45.5 3.85 F
412 413 0.038744 AAATGCACCCCCAGAGACTG 59.961 55.0 0.00 0.00 0.0 3.51 F
417 418 0.987294 CACCCCCAGAGACTGTTGAT 59.013 55.0 0.00 0.00 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 2973 0.250234 TCTCCTTGTTCCGCATCAGG 59.750 55.000 0.00 0.0 0.00 3.86 R
1397 3358 2.102578 CCCTGTTGTTCATCATTCCCC 58.897 52.381 0.00 0.0 0.00 4.81 R
1805 3771 2.487086 GGCCCTCAAAATTTGGCAACTT 60.487 45.455 16.54 0.0 45.83 2.66 R
2031 4006 5.283457 AGCACTGACTATACCAAAGGATC 57.717 43.478 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.448985 TGAAGCTAAACGTGGATGGC 58.551 50.000 0.00 0.00 0.00 4.40
20 21 0.733150 GAAGCTAAACGTGGATGGCC 59.267 55.000 0.00 0.00 0.00 5.36
21 22 0.679960 AAGCTAAACGTGGATGGCCC 60.680 55.000 0.00 0.00 0.00 5.80
25 26 2.524951 TAAACGTGGATGGCCCGGAC 62.525 60.000 0.73 0.00 37.93 4.79
27 28 4.096003 CGTGGATGGCCCGGACTT 62.096 66.667 0.73 0.00 37.93 3.01
28 29 2.124695 GTGGATGGCCCGGACTTC 60.125 66.667 0.73 3.08 37.93 3.01
29 30 2.285368 TGGATGGCCCGGACTTCT 60.285 61.111 0.73 0.00 37.93 2.85
30 31 1.002403 TGGATGGCCCGGACTTCTA 59.998 57.895 0.73 0.00 37.93 2.10
31 32 1.048724 TGGATGGCCCGGACTTCTAG 61.049 60.000 0.73 0.00 37.93 2.43
32 33 1.749033 GATGGCCCGGACTTCTAGG 59.251 63.158 0.73 0.00 0.00 3.02
36 37 3.539842 CCCGGACTTCTAGGGCTC 58.460 66.667 0.73 0.00 38.51 4.70
37 38 2.491022 CCCGGACTTCTAGGGCTCG 61.491 68.421 0.73 0.00 38.51 5.03
39 40 0.465097 CCGGACTTCTAGGGCTCGTA 60.465 60.000 0.00 0.00 0.00 3.43
41 42 1.267261 CGGACTTCTAGGGCTCGTATG 59.733 57.143 0.00 0.00 0.00 2.39
43 44 1.000052 GACTTCTAGGGCTCGTATGGC 60.000 57.143 0.00 0.00 0.00 4.40
44 45 0.039074 CTTCTAGGGCTCGTATGGCG 60.039 60.000 0.00 0.00 43.01 5.69
45 46 2.049063 CTAGGGCTCGTATGGCGC 60.049 66.667 0.00 0.00 41.07 6.53
46 47 2.835895 TAGGGCTCGTATGGCGCA 60.836 61.111 10.83 0.00 43.57 6.09
47 48 2.755542 CTAGGGCTCGTATGGCGCAG 62.756 65.000 10.83 0.00 43.57 5.18
48 49 4.530857 GGGCTCGTATGGCGCAGT 62.531 66.667 10.83 0.00 41.33 4.40
49 50 2.962253 GGCTCGTATGGCGCAGTC 60.962 66.667 10.83 0.00 41.07 3.51
57 58 3.698765 TGGCGCAGTCATCAGAGA 58.301 55.556 10.83 0.00 36.97 3.10
58 59 1.216444 TGGCGCAGTCATCAGAGAC 59.784 57.895 10.83 0.00 36.97 3.36
60 61 0.527385 GGCGCAGTCATCAGAGACTC 60.527 60.000 10.83 0.00 45.35 3.36
61 62 0.865218 GCGCAGTCATCAGAGACTCG 60.865 60.000 0.30 0.00 45.35 4.18
64 65 2.223456 CGCAGTCATCAGAGACTCGAAT 60.223 50.000 0.00 0.00 45.35 3.34
66 67 3.704512 CAGTCATCAGAGACTCGAATGG 58.295 50.000 15.73 0.79 45.35 3.16
67 68 2.100584 AGTCATCAGAGACTCGAATGGC 59.899 50.000 13.66 13.66 45.35 4.40
68 69 2.102578 TCATCAGAGACTCGAATGGCA 58.897 47.619 15.73 0.00 0.00 4.92
69 70 2.100418 TCATCAGAGACTCGAATGGCAG 59.900 50.000 15.73 0.00 0.00 4.85
71 72 2.382882 TCAGAGACTCGAATGGCAGAT 58.617 47.619 0.00 0.00 0.00 2.90
73 74 3.196469 TCAGAGACTCGAATGGCAGATTT 59.804 43.478 0.00 0.00 0.00 2.17
74 75 3.309138 CAGAGACTCGAATGGCAGATTTG 59.691 47.826 0.00 0.00 0.00 2.32
75 76 3.055530 AGAGACTCGAATGGCAGATTTGT 60.056 43.478 0.00 0.00 0.00 2.83
76 77 3.265791 AGACTCGAATGGCAGATTTGTC 58.734 45.455 0.00 0.00 0.00 3.18
78 79 0.726827 TCGAATGGCAGATTTGTCGC 59.273 50.000 0.00 0.00 0.00 5.19
80 81 1.530441 CGAATGGCAGATTTGTCGCAG 60.530 52.381 0.00 0.00 0.00 5.18
81 82 0.171903 AATGGCAGATTTGTCGCAGC 59.828 50.000 0.00 0.00 0.00 5.25
82 83 0.961857 ATGGCAGATTTGTCGCAGCA 60.962 50.000 0.00 0.00 0.00 4.41
83 84 1.136147 GGCAGATTTGTCGCAGCAG 59.864 57.895 0.00 0.00 0.00 4.24
85 86 1.300971 GCAGATTTGTCGCAGCAGGA 61.301 55.000 0.00 0.00 0.00 3.86
86 87 1.159285 CAGATTTGTCGCAGCAGGAA 58.841 50.000 0.00 0.00 0.00 3.36
87 88 1.536766 CAGATTTGTCGCAGCAGGAAA 59.463 47.619 0.00 0.00 0.00 3.13
89 90 0.238289 ATTTGTCGCAGCAGGAAACG 59.762 50.000 0.00 0.00 0.00 3.60
90 91 1.092921 TTTGTCGCAGCAGGAAACGT 61.093 50.000 0.00 0.00 0.00 3.99
91 92 1.771073 TTGTCGCAGCAGGAAACGTG 61.771 55.000 0.00 0.00 0.00 4.49
94 95 0.812014 TCGCAGCAGGAAACGTGAAA 60.812 50.000 0.00 0.00 0.00 2.69
95 96 0.028770 CGCAGCAGGAAACGTGAAAA 59.971 50.000 0.00 0.00 0.00 2.29
97 98 2.319472 GCAGCAGGAAACGTGAAAATC 58.681 47.619 0.00 0.00 0.00 2.17
99 100 2.223144 CAGCAGGAAACGTGAAAATCGA 59.777 45.455 0.00 0.00 0.00 3.59
100 101 3.074412 AGCAGGAAACGTGAAAATCGAT 58.926 40.909 0.00 0.00 0.00 3.59
101 102 3.502211 AGCAGGAAACGTGAAAATCGATT 59.498 39.130 4.39 4.39 0.00 3.34
102 103 3.603770 GCAGGAAACGTGAAAATCGATTG 59.396 43.478 12.25 0.84 0.00 2.67
103 104 4.158384 CAGGAAACGTGAAAATCGATTGG 58.842 43.478 12.25 1.98 0.00 3.16
104 105 3.818773 AGGAAACGTGAAAATCGATTGGT 59.181 39.130 12.25 2.57 0.00 3.67
105 106 3.911964 GGAAACGTGAAAATCGATTGGTG 59.088 43.478 12.25 3.23 0.00 4.17
107 108 1.136085 ACGTGAAAATCGATTGGTGCG 60.136 47.619 12.25 15.75 0.00 5.34
108 109 1.790123 CGTGAAAATCGATTGGTGCGG 60.790 52.381 12.25 0.00 0.00 5.69
109 110 1.466950 GTGAAAATCGATTGGTGCGGA 59.533 47.619 12.25 0.00 0.00 5.54
110 111 1.466950 TGAAAATCGATTGGTGCGGAC 59.533 47.619 12.25 0.00 0.00 4.79
111 112 1.466950 GAAAATCGATTGGTGCGGACA 59.533 47.619 12.25 0.00 0.00 4.02
112 113 1.750193 AAATCGATTGGTGCGGACAT 58.250 45.000 12.25 0.00 0.00 3.06
113 114 1.016627 AATCGATTGGTGCGGACATG 58.983 50.000 10.50 0.00 0.00 3.21
115 116 1.018752 TCGATTGGTGCGGACATGTG 61.019 55.000 9.96 0.00 0.00 3.21
116 117 1.137404 GATTGGTGCGGACATGTGC 59.863 57.895 9.96 4.73 0.00 4.57
117 118 1.303561 ATTGGTGCGGACATGTGCT 60.304 52.632 15.82 0.00 0.00 4.40
118 119 0.895100 ATTGGTGCGGACATGTGCTT 60.895 50.000 15.82 0.00 0.00 3.91
120 121 0.035534 TGGTGCGGACATGTGCTTAT 60.036 50.000 15.82 0.00 0.00 1.73
121 122 1.208293 TGGTGCGGACATGTGCTTATA 59.792 47.619 15.82 0.00 0.00 0.98
123 124 1.261619 GTGCGGACATGTGCTTATAGC 59.738 52.381 15.82 11.08 42.82 2.97
124 125 0.868406 GCGGACATGTGCTTATAGCC 59.132 55.000 15.82 0.79 41.51 3.93
125 126 1.810031 GCGGACATGTGCTTATAGCCA 60.810 52.381 15.82 0.00 41.51 4.75
126 127 2.138320 CGGACATGTGCTTATAGCCAG 58.862 52.381 15.82 0.00 41.51 4.85
127 128 2.498167 GGACATGTGCTTATAGCCAGG 58.502 52.381 10.51 0.00 41.51 4.45
129 130 1.242076 CATGTGCTTATAGCCAGGGC 58.758 55.000 0.97 0.97 41.51 5.19
130 131 0.846015 ATGTGCTTATAGCCAGGGCA 59.154 50.000 13.63 0.00 41.51 5.36
132 133 0.181350 GTGCTTATAGCCAGGGCACT 59.819 55.000 13.63 1.42 46.39 4.40
133 134 0.181114 TGCTTATAGCCAGGGCACTG 59.819 55.000 9.70 9.70 41.51 3.66
134 135 2.247402 TGCTTATAGCCAGGGCACTGA 61.247 52.381 20.22 0.00 42.47 3.41
135 136 4.386618 TGCTTATAGCCAGGGCACTGAC 62.387 54.545 20.22 5.58 42.47 3.51
137 138 0.031111 TATAGCCAGGGCACTGACCT 60.031 55.000 20.22 15.63 45.50 3.85
139 140 0.252513 TAGCCAGGGCACTGACCTTA 60.253 55.000 20.22 0.86 38.30 2.69
140 141 1.377333 GCCAGGGCACTGACCTTAC 60.377 63.158 20.22 0.00 38.30 2.34
141 142 1.079127 CCAGGGCACTGACCTTACG 60.079 63.158 20.22 0.00 38.30 3.18
142 143 1.741770 CAGGGCACTGACCTTACGC 60.742 63.158 11.66 0.00 38.30 4.42
143 144 1.913762 AGGGCACTGACCTTACGCT 60.914 57.895 0.00 0.00 38.30 5.07
145 146 0.605589 GGGCACTGACCTTACGCTTT 60.606 55.000 0.00 0.00 0.00 3.51
146 147 0.517316 GGCACTGACCTTACGCTTTG 59.483 55.000 0.00 0.00 0.00 2.77
147 148 0.517316 GCACTGACCTTACGCTTTGG 59.483 55.000 0.00 0.00 0.00 3.28
148 149 1.878953 CACTGACCTTACGCTTTGGT 58.121 50.000 0.00 0.00 36.70 3.67
152 153 2.450609 GACCTTACGCTTTGGTCTCA 57.549 50.000 9.33 0.00 44.84 3.27
153 154 2.762745 GACCTTACGCTTTGGTCTCAA 58.237 47.619 9.33 0.00 44.84 3.02
155 156 3.751518 ACCTTACGCTTTGGTCTCAATT 58.248 40.909 0.00 0.00 32.28 2.32
157 158 4.023193 ACCTTACGCTTTGGTCTCAATTTG 60.023 41.667 0.00 0.00 32.28 2.32
159 160 1.000274 ACGCTTTGGTCTCAATTTGGC 60.000 47.619 0.00 0.00 32.28 4.52
161 162 2.545532 CGCTTTGGTCTCAATTTGGCAA 60.546 45.455 0.00 0.00 32.28 4.52
162 163 2.802247 GCTTTGGTCTCAATTTGGCAAC 59.198 45.455 0.00 0.00 32.28 4.17
164 165 4.301628 CTTTGGTCTCAATTTGGCAACTC 58.698 43.478 0.00 0.00 32.28 3.01
165 166 2.238521 TGGTCTCAATTTGGCAACTCC 58.761 47.619 0.00 0.00 37.61 3.85
166 167 2.238521 GGTCTCAATTTGGCAACTCCA 58.761 47.619 0.00 0.00 44.85 3.86
167 168 7.187439 TTTGGTCTCAATTTGGCAACTCCAG 62.187 44.000 0.00 0.00 38.24 3.86
174 175 2.358737 GGCAACTCCAGTCGGGTG 60.359 66.667 0.00 0.00 38.11 4.61
175 176 2.426023 GCAACTCCAGTCGGGTGT 59.574 61.111 0.00 0.00 45.09 4.16
176 177 1.669440 GCAACTCCAGTCGGGTGTA 59.331 57.895 0.00 0.00 42.43 2.90
178 179 1.792006 CAACTCCAGTCGGGTGTAAC 58.208 55.000 0.00 0.00 42.43 2.50
190 191 2.466867 GTGTAACCGCATGGAGGTG 58.533 57.895 0.00 0.00 41.95 4.00
192 193 0.687920 TGTAACCGCATGGAGGTGAA 59.312 50.000 0.00 0.00 41.95 3.18
193 194 1.084289 GTAACCGCATGGAGGTGAAC 58.916 55.000 0.00 0.00 41.95 3.18
194 195 0.981183 TAACCGCATGGAGGTGAACT 59.019 50.000 0.00 0.00 41.95 3.01
195 196 0.321653 AACCGCATGGAGGTGAACTC 60.322 55.000 0.00 0.00 41.95 3.01
203 204 3.980583 GAGGTGAACTCCGACAACA 57.019 52.632 0.00 0.00 40.49 3.33
222 223 8.978564 GACAACATCGATGTGATAGAGATAAT 57.021 34.615 30.57 8.41 41.61 1.28
225 226 9.415544 CAACATCGATGTGATAGAGATAATGAA 57.584 33.333 30.57 0.00 41.61 2.57
227 228 8.579863 ACATCGATGTGATAGAGATAATGAACA 58.420 33.333 29.49 0.00 40.03 3.18
228 229 9.415544 CATCGATGTGATAGAGATAATGAACAA 57.584 33.333 17.50 0.00 34.83 2.83
230 231 9.415544 TCGATGTGATAGAGATAATGAACAATG 57.584 33.333 0.00 0.00 0.00 2.82
231 232 8.654215 CGATGTGATAGAGATAATGAACAATGG 58.346 37.037 0.00 0.00 0.00 3.16
232 233 7.734924 TGTGATAGAGATAATGAACAATGGC 57.265 36.000 0.00 0.00 0.00 4.40
235 236 4.156455 AGAGATAATGAACAATGGCGGT 57.844 40.909 0.00 0.00 0.00 5.68
238 239 2.645730 TAATGAACAATGGCGGTTGC 57.354 45.000 2.76 0.00 41.71 4.17
239 240 0.968405 AATGAACAATGGCGGTTGCT 59.032 45.000 2.76 0.00 42.25 3.91
240 241 0.527565 ATGAACAATGGCGGTTGCTC 59.472 50.000 2.76 1.58 42.25 4.26
243 244 1.000274 GAACAATGGCGGTTGCTCTTT 60.000 47.619 2.76 0.00 42.25 2.52
245 246 0.454957 CAATGGCGGTTGCTCTTTCG 60.455 55.000 0.00 0.00 42.25 3.46
246 247 1.586154 AATGGCGGTTGCTCTTTCGG 61.586 55.000 0.00 0.00 42.25 4.30
247 248 2.668550 GGCGGTTGCTCTTTCGGT 60.669 61.111 0.00 0.00 42.25 4.69
249 250 1.668151 GCGGTTGCTCTTTCGGTCT 60.668 57.895 0.00 0.00 38.39 3.85
251 252 1.739371 GCGGTTGCTCTTTCGGTCTAT 60.739 52.381 0.00 0.00 38.39 1.98
252 253 2.194271 CGGTTGCTCTTTCGGTCTATC 58.806 52.381 0.00 0.00 0.00 2.08
253 254 2.194271 GGTTGCTCTTTCGGTCTATCG 58.806 52.381 0.00 0.00 0.00 2.92
254 255 2.159282 GGTTGCTCTTTCGGTCTATCGA 60.159 50.000 0.00 0.00 37.38 3.59
255 256 2.846039 TGCTCTTTCGGTCTATCGAC 57.154 50.000 0.00 0.00 39.01 4.20
256 257 1.063616 TGCTCTTTCGGTCTATCGACG 59.936 52.381 0.00 0.00 41.16 5.12
257 258 1.597445 GCTCTTTCGGTCTATCGACGG 60.597 57.143 0.00 0.00 41.16 4.79
258 259 1.669779 CTCTTTCGGTCTATCGACGGT 59.330 52.381 5.10 0.00 41.16 4.83
260 261 2.868583 TCTTTCGGTCTATCGACGGTAG 59.131 50.000 8.93 8.93 41.16 3.18
264 265 3.009723 TCGGTCTATCGACGGTAGTTTT 58.990 45.455 14.56 0.00 41.16 2.43
265 266 3.440173 TCGGTCTATCGACGGTAGTTTTT 59.560 43.478 14.56 0.00 41.16 1.94
267 268 4.672542 CGGTCTATCGACGGTAGTTTTTGA 60.673 45.833 14.56 0.00 41.16 2.69
268 269 5.346522 GGTCTATCGACGGTAGTTTTTGAT 58.653 41.667 14.56 0.00 41.16 2.57
269 270 5.231568 GGTCTATCGACGGTAGTTTTTGATG 59.768 44.000 14.56 0.00 41.16 3.07
272 273 4.177165 TCGACGGTAGTTTTTGATGCTA 57.823 40.909 0.00 0.00 0.00 3.49
273 274 4.751060 TCGACGGTAGTTTTTGATGCTAT 58.249 39.130 0.00 0.00 0.00 2.97
275 276 6.509656 TCGACGGTAGTTTTTGATGCTATAT 58.490 36.000 0.00 0.00 0.00 0.86
276 277 7.650890 TCGACGGTAGTTTTTGATGCTATATA 58.349 34.615 0.00 0.00 0.00 0.86
278 279 8.584600 CGACGGTAGTTTTTGATGCTATATATC 58.415 37.037 0.00 0.00 0.00 1.63
280 281 9.204570 ACGGTAGTTTTTGATGCTATATATCAC 57.795 33.333 0.00 0.00 34.50 3.06
281 282 8.656849 CGGTAGTTTTTGATGCTATATATCACC 58.343 37.037 0.00 0.00 34.50 4.02
282 283 9.726438 GGTAGTTTTTGATGCTATATATCACCT 57.274 33.333 0.00 0.00 34.50 4.00
285 286 8.571336 AGTTTTTGATGCTATATATCACCTTGC 58.429 33.333 0.00 0.00 34.50 4.01
286 287 6.726258 TTTGATGCTATATATCACCTTGCG 57.274 37.500 0.00 0.00 34.50 4.85
287 288 5.405935 TGATGCTATATATCACCTTGCGT 57.594 39.130 0.00 0.00 30.03 5.24
288 289 5.170748 TGATGCTATATATCACCTTGCGTG 58.829 41.667 0.00 0.00 44.50 5.34
289 290 4.600692 TGCTATATATCACCTTGCGTGT 57.399 40.909 0.00 0.00 43.51 4.49
290 291 4.306600 TGCTATATATCACCTTGCGTGTG 58.693 43.478 0.00 0.00 43.51 3.82
291 292 4.038642 TGCTATATATCACCTTGCGTGTGA 59.961 41.667 5.40 5.40 45.98 3.58
296 297 1.234821 TCACCTTGCGTGTGATTTCC 58.765 50.000 0.00 0.00 43.51 3.13
297 298 0.240945 CACCTTGCGTGTGATTTCCC 59.759 55.000 0.00 0.00 37.73 3.97
301 302 3.187058 GCGTGTGATTTCCCGCAT 58.813 55.556 0.00 0.00 45.12 4.73
302 303 2.389386 GCGTGTGATTTCCCGCATA 58.611 52.632 0.00 0.00 45.12 3.14
303 304 0.944386 GCGTGTGATTTCCCGCATAT 59.056 50.000 0.00 0.00 45.12 1.78
304 305 1.333619 GCGTGTGATTTCCCGCATATT 59.666 47.619 0.00 0.00 45.12 1.28
306 307 3.733684 GCGTGTGATTTCCCGCATATTTT 60.734 43.478 0.00 0.00 45.12 1.82
307 308 4.420168 CGTGTGATTTCCCGCATATTTTT 58.580 39.130 0.00 0.00 0.00 1.94
329 330 5.590530 TTTGAGCATCCTTCTAGAGAGAC 57.409 43.478 0.00 0.00 0.00 3.36
330 331 4.518278 TGAGCATCCTTCTAGAGAGACT 57.482 45.455 0.00 0.00 0.00 3.24
331 332 5.638530 TGAGCATCCTTCTAGAGAGACTA 57.361 43.478 0.00 0.00 0.00 2.59
333 334 6.609876 TGAGCATCCTTCTAGAGAGACTAAT 58.390 40.000 0.00 0.00 0.00 1.73
336 337 6.838612 AGCATCCTTCTAGAGAGACTAATTGT 59.161 38.462 0.00 0.00 0.00 2.71
337 338 6.922957 GCATCCTTCTAGAGAGACTAATTGTG 59.077 42.308 0.00 0.00 0.00 3.33
338 339 6.458232 TCCTTCTAGAGAGACTAATTGTGC 57.542 41.667 0.00 0.00 0.00 4.57
342 343 8.296713 CCTTCTAGAGAGACTAATTGTGCTATC 58.703 40.741 0.00 0.00 0.00 2.08
343 344 7.753309 TCTAGAGAGACTAATTGTGCTATCC 57.247 40.000 0.00 0.00 0.00 2.59
344 345 7.290813 TCTAGAGAGACTAATTGTGCTATCCA 58.709 38.462 0.00 0.00 0.00 3.41
345 346 6.992664 AGAGAGACTAATTGTGCTATCCAT 57.007 37.500 0.00 0.00 0.00 3.41
346 347 6.757237 AGAGAGACTAATTGTGCTATCCATG 58.243 40.000 0.00 0.00 0.00 3.66
347 348 6.552725 AGAGAGACTAATTGTGCTATCCATGA 59.447 38.462 0.00 0.00 0.00 3.07
351 352 9.494271 GAGACTAATTGTGCTATCCATGATTTA 57.506 33.333 0.00 0.00 0.00 1.40
352 353 9.499479 AGACTAATTGTGCTATCCATGATTTAG 57.501 33.333 0.00 0.00 0.00 1.85
353 354 8.103948 ACTAATTGTGCTATCCATGATTTAGC 57.896 34.615 12.07 12.07 39.01 3.09
354 355 7.941238 ACTAATTGTGCTATCCATGATTTAGCT 59.059 33.333 16.99 0.00 39.24 3.32
355 356 9.440773 CTAATTGTGCTATCCATGATTTAGCTA 57.559 33.333 16.99 0.00 39.24 3.32
357 358 8.696043 ATTGTGCTATCCATGATTTAGCTAAA 57.304 30.769 20.71 20.71 39.24 1.85
360 361 8.570488 TGTGCTATCCATGATTTAGCTAAATTG 58.430 33.333 27.96 22.64 39.24 2.32
361 362 8.025445 GTGCTATCCATGATTTAGCTAAATTGG 58.975 37.037 29.00 29.00 39.24 3.16
362 363 7.031975 GCTATCCATGATTTAGCTAAATTGGC 58.968 38.462 29.57 22.58 35.23 4.52
364 365 9.453572 CTATCCATGATTTAGCTAAATTGGCTA 57.546 33.333 29.57 25.31 40.74 3.93
365 366 7.750229 TCCATGATTTAGCTAAATTGGCTAG 57.250 36.000 29.57 18.94 42.22 3.42
367 368 7.998383 TCCATGATTTAGCTAAATTGGCTAGAA 59.002 33.333 29.57 17.81 42.22 2.10
368 369 8.295288 CCATGATTTAGCTAAATTGGCTAGAAG 58.705 37.037 27.96 13.01 42.22 2.85
371 372 9.899661 TGATTTAGCTAAATTGGCTAGAAGTAA 57.100 29.630 27.96 3.48 42.22 2.24
373 374 8.732746 TTTAGCTAAATTGGCTAGAAGTAAGG 57.267 34.615 14.96 0.00 42.22 2.69
375 376 6.116126 AGCTAAATTGGCTAGAAGTAAGGTG 58.884 40.000 0.86 0.00 38.36 4.00
376 377 5.880887 GCTAAATTGGCTAGAAGTAAGGTGT 59.119 40.000 0.00 0.00 0.00 4.16
378 379 7.715686 GCTAAATTGGCTAGAAGTAAGGTGTAT 59.284 37.037 0.00 0.00 0.00 2.29
380 381 4.402056 TGGCTAGAAGTAAGGTGTATGC 57.598 45.455 0.00 0.00 0.00 3.14
381 382 3.772572 TGGCTAGAAGTAAGGTGTATGCA 59.227 43.478 0.00 0.00 0.00 3.96
382 383 4.141937 TGGCTAGAAGTAAGGTGTATGCAG 60.142 45.833 0.00 0.00 0.00 4.41
383 384 4.372656 GCTAGAAGTAAGGTGTATGCAGG 58.627 47.826 0.00 0.00 0.00 4.85
385 386 3.182152 AGAAGTAAGGTGTATGCAGGGT 58.818 45.455 0.00 0.00 0.00 4.34
386 387 3.055094 AGAAGTAAGGTGTATGCAGGGTG 60.055 47.826 0.00 0.00 0.00 4.61
387 388 1.559682 AGTAAGGTGTATGCAGGGTGG 59.440 52.381 0.00 0.00 0.00 4.61
388 389 1.557832 GTAAGGTGTATGCAGGGTGGA 59.442 52.381 0.00 0.00 0.00 4.02
389 390 1.298953 AAGGTGTATGCAGGGTGGAT 58.701 50.000 0.00 0.00 31.80 3.41
390 391 0.548031 AGGTGTATGCAGGGTGGATG 59.452 55.000 0.00 0.00 29.08 3.51
391 392 0.546122 GGTGTATGCAGGGTGGATGA 59.454 55.000 0.00 0.00 29.08 2.92
393 394 2.620367 GGTGTATGCAGGGTGGATGAAA 60.620 50.000 0.00 0.00 29.08 2.69
395 396 3.509575 GTGTATGCAGGGTGGATGAAAAA 59.490 43.478 0.00 0.00 29.08 1.94
396 397 4.160252 GTGTATGCAGGGTGGATGAAAAAT 59.840 41.667 0.00 0.00 29.08 1.82
397 398 3.899052 ATGCAGGGTGGATGAAAAATG 57.101 42.857 0.00 0.00 0.00 2.32
398 399 1.275856 TGCAGGGTGGATGAAAAATGC 59.724 47.619 0.00 0.00 0.00 3.56
399 400 1.275856 GCAGGGTGGATGAAAAATGCA 59.724 47.619 0.00 0.00 32.79 3.96
400 401 2.932187 GCAGGGTGGATGAAAAATGCAC 60.932 50.000 0.00 1.76 39.25 4.57
403 404 2.385013 GTGGATGAAAAATGCACCCC 57.615 50.000 0.00 0.00 34.83 4.95
404 405 1.066215 GTGGATGAAAAATGCACCCCC 60.066 52.381 0.00 0.00 34.83 5.40
405 406 1.274712 GGATGAAAAATGCACCCCCA 58.725 50.000 0.00 0.00 0.00 4.96
406 407 1.207811 GGATGAAAAATGCACCCCCAG 59.792 52.381 0.00 0.00 0.00 4.45
407 408 2.178580 GATGAAAAATGCACCCCCAGA 58.821 47.619 0.00 0.00 0.00 3.86
408 409 1.631405 TGAAAAATGCACCCCCAGAG 58.369 50.000 0.00 0.00 0.00 3.35
409 410 1.146774 TGAAAAATGCACCCCCAGAGA 59.853 47.619 0.00 0.00 0.00 3.10
410 411 1.546029 GAAAAATGCACCCCCAGAGAC 59.454 52.381 0.00 0.00 0.00 3.36
411 412 0.779997 AAAATGCACCCCCAGAGACT 59.220 50.000 0.00 0.00 0.00 3.24
412 413 0.038744 AAATGCACCCCCAGAGACTG 59.961 55.000 0.00 0.00 0.00 3.51
414 415 1.136329 ATGCACCCCCAGAGACTGTT 61.136 55.000 0.00 0.00 0.00 3.16
415 416 1.302832 GCACCCCCAGAGACTGTTG 60.303 63.158 0.00 0.00 0.00 3.33
416 417 1.768684 GCACCCCCAGAGACTGTTGA 61.769 60.000 0.00 0.00 0.00 3.18
417 418 0.987294 CACCCCCAGAGACTGTTGAT 59.013 55.000 0.00 0.00 0.00 2.57
419 420 2.093447 CACCCCCAGAGACTGTTGATAC 60.093 54.545 0.00 0.00 0.00 2.24
420 421 2.225650 ACCCCCAGAGACTGTTGATACT 60.226 50.000 0.00 0.00 0.00 2.12
421 422 2.432510 CCCCCAGAGACTGTTGATACTC 59.567 54.545 0.00 0.00 0.00 2.59
422 423 3.370104 CCCCAGAGACTGTTGATACTCT 58.630 50.000 0.00 0.00 39.82 3.24
423 424 3.772025 CCCCAGAGACTGTTGATACTCTT 59.228 47.826 0.00 0.00 37.59 2.85
424 425 4.382470 CCCCAGAGACTGTTGATACTCTTG 60.382 50.000 0.00 0.00 37.59 3.02
425 426 4.221703 CCCAGAGACTGTTGATACTCTTGT 59.778 45.833 0.00 0.00 37.59 3.16
426 427 5.419155 CCCAGAGACTGTTGATACTCTTGTA 59.581 44.000 0.00 0.00 37.59 2.41
427 428 6.071334 CCCAGAGACTGTTGATACTCTTGTAA 60.071 42.308 0.00 0.00 37.59 2.41
428 429 7.378966 CCAGAGACTGTTGATACTCTTGTAAA 58.621 38.462 0.00 0.00 37.59 2.01
429 430 7.872993 CCAGAGACTGTTGATACTCTTGTAAAA 59.127 37.037 0.00 0.00 37.59 1.52
430 431 9.429359 CAGAGACTGTTGATACTCTTGTAAAAT 57.571 33.333 0.00 0.00 37.59 1.82
461 462 7.634671 TGATGATCACATTGCAATAAAGAGT 57.365 32.000 12.53 2.30 36.82 3.24
465 466 9.570468 ATGATCACATTGCAATAAAGAGTATCT 57.430 29.630 12.53 0.00 39.90 1.98
525 526 2.984871 TTTTTCTTTTGCGCAGGGC 58.015 47.368 11.31 1.58 43.96 5.19
534 535 4.575973 GCGCAGGGCATGGAGGAT 62.576 66.667 0.30 0.00 42.87 3.24
535 536 2.593725 CGCAGGGCATGGAGGATG 60.594 66.667 0.00 0.00 34.84 3.51
544 545 1.676746 CATGGAGGATGCTTGAGTGG 58.323 55.000 0.00 0.00 33.35 4.00
546 547 1.452833 GGAGGATGCTTGAGTGGGC 60.453 63.158 0.00 0.00 0.00 5.36
547 548 1.452833 GAGGATGCTTGAGTGGGCC 60.453 63.158 0.00 0.00 0.00 5.80
548 549 1.919600 GAGGATGCTTGAGTGGGCCT 61.920 60.000 4.53 0.00 0.00 5.19
549 550 1.751927 GGATGCTTGAGTGGGCCTG 60.752 63.158 4.53 0.00 0.00 4.85
550 551 1.751927 GATGCTTGAGTGGGCCTGG 60.752 63.158 4.53 0.00 0.00 4.45
552 553 2.674380 GCTTGAGTGGGCCTGGTG 60.674 66.667 4.53 0.00 0.00 4.17
553 554 2.674380 CTTGAGTGGGCCTGGTGC 60.674 66.667 4.53 0.00 40.16 5.01
555 556 2.776370 CTTGAGTGGGCCTGGTGCAT 62.776 60.000 4.53 0.00 43.89 3.96
556 557 2.753043 GAGTGGGCCTGGTGCATG 60.753 66.667 4.53 0.00 43.89 4.06
570 571 2.962125 GTGCATGCACAAATTCATGGA 58.038 42.857 39.12 3.53 45.53 3.41
571 572 3.527533 GTGCATGCACAAATTCATGGAT 58.472 40.909 39.12 0.00 45.53 3.41
572 573 4.684877 GTGCATGCACAAATTCATGGATA 58.315 39.130 39.12 2.34 45.53 2.59
573 574 5.294356 GTGCATGCACAAATTCATGGATAT 58.706 37.500 39.12 0.00 45.53 1.63
575 576 6.924612 GTGCATGCACAAATTCATGGATATAA 59.075 34.615 39.12 1.19 45.53 0.98
577 578 8.151596 TGCATGCACAAATTCATGGATATAAAT 58.848 29.630 18.46 0.00 40.16 1.40
578 579 8.440059 GCATGCACAAATTCATGGATATAAATG 58.560 33.333 14.21 0.00 40.16 2.32
579 580 9.699703 CATGCACAAATTCATGGATATAAATGA 57.300 29.630 0.00 0.00 37.13 2.57
580 581 9.701098 ATGCACAAATTCATGGATATAAATGAC 57.299 29.630 0.00 0.00 32.63 3.06
581 582 8.693625 TGCACAAATTCATGGATATAAATGACA 58.306 29.630 0.00 0.00 32.63 3.58
678 679 7.022384 CCACCAGCGATTTTTATTTAACGTAA 58.978 34.615 0.00 0.00 0.00 3.18
679 680 7.537991 CCACCAGCGATTTTTATTTAACGTAAA 59.462 33.333 0.00 0.00 0.00 2.01
685 686 7.459991 GCGATTTTTATTTAACGTAAACCACCG 60.460 37.037 0.00 0.00 0.00 4.94
755 758 2.511600 CCCATCTCCGCACGGTTC 60.512 66.667 9.23 0.00 36.47 3.62
756 759 2.885644 CCATCTCCGCACGGTTCG 60.886 66.667 9.23 0.00 36.47 3.95
852 2763 4.802051 AGCCGCCATGCCGACATT 62.802 61.111 0.00 0.00 32.87 2.71
1129 3048 2.923629 TGGGGCTTCAAGGTAATTAGGT 59.076 45.455 0.00 0.00 0.00 3.08
1273 3194 0.994247 TGATGAGAATGTGGCCAGGT 59.006 50.000 5.11 0.00 0.00 4.00
1350 3311 6.157994 AGGTGTGTTTGCTATCTATTCCCTTA 59.842 38.462 0.00 0.00 0.00 2.69
1397 3358 3.448686 AGATGATGTCGCCTCTTTAACG 58.551 45.455 0.00 0.00 0.00 3.18
1656 3621 4.806640 ATTTGTGGCTGGAATTTAGTGG 57.193 40.909 0.00 0.00 0.00 4.00
1805 3771 8.340618 AGCTCATTTTGCAGAATTTTCTACTA 57.659 30.769 0.00 0.00 35.34 1.82
2037 4012 3.882131 CCATCGTTGGTGGATCCTT 57.118 52.632 14.23 0.00 39.12 3.36
2704 4696 5.823209 TGATGCAATTCACAGGAACATAG 57.177 39.130 0.00 0.00 35.46 2.23
2846 4841 6.293004 ACTTTGTGGAGAAATTTGGTTCAA 57.707 33.333 0.00 0.00 0.00 2.69
2858 4853 9.362151 AGAAATTTGGTTCAATACTAACCTTCA 57.638 29.630 0.00 0.00 45.53 3.02
2910 4905 5.674933 AGCGTTTTATTAGATTAGCAGGC 57.325 39.130 0.00 0.00 0.00 4.85
2914 4909 7.171678 AGCGTTTTATTAGATTAGCAGGCTAAG 59.828 37.037 17.64 2.90 41.18 2.18
2923 4918 7.841282 AGATTAGCAGGCTAAGTATACAAGA 57.159 36.000 17.64 0.00 41.18 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.733150 GGCCATCCACGTTTAGCTTC 59.267 55.000 0.00 0.00 0.00 3.86
2 3 0.679960 GGGCCATCCACGTTTAGCTT 60.680 55.000 4.39 0.00 35.00 3.74
3 4 1.077716 GGGCCATCCACGTTTAGCT 60.078 57.895 4.39 0.00 35.00 3.32
4 5 2.469516 CGGGCCATCCACGTTTAGC 61.470 63.158 4.39 0.00 34.36 3.09
5 6 1.817941 CCGGGCCATCCACGTTTAG 60.818 63.158 4.39 0.00 34.36 1.85
6 7 2.269562 CCGGGCCATCCACGTTTA 59.730 61.111 4.39 0.00 34.36 2.01
10 11 4.096003 AAGTCCGGGCCATCCACG 62.096 66.667 0.08 0.00 34.36 4.94
11 12 1.335132 TAGAAGTCCGGGCCATCCAC 61.335 60.000 0.08 0.00 34.36 4.02
13 14 1.749033 CTAGAAGTCCGGGCCATCC 59.251 63.158 0.08 0.00 0.00 3.51
14 15 1.749033 CCTAGAAGTCCGGGCCATC 59.251 63.158 0.08 0.81 0.00 3.51
15 16 1.766461 CCCTAGAAGTCCGGGCCAT 60.766 63.158 0.08 0.00 0.00 4.40
19 20 2.491022 CGAGCCCTAGAAGTCCGGG 61.491 68.421 0.00 0.00 41.06 5.73
20 21 0.465097 TACGAGCCCTAGAAGTCCGG 60.465 60.000 0.00 0.00 0.00 5.14
21 22 1.267261 CATACGAGCCCTAGAAGTCCG 59.733 57.143 0.00 0.00 0.00 4.79
25 26 3.896317 GCCATACGAGCCCTAGAAG 57.104 57.895 0.00 0.00 0.00 2.85
37 38 1.067669 TCTCTGATGACTGCGCCATAC 59.932 52.381 4.18 0.00 0.00 2.39
39 40 0.179089 GTCTCTGATGACTGCGCCAT 60.179 55.000 4.18 0.00 34.39 4.40
41 42 0.527385 GAGTCTCTGATGACTGCGCC 60.527 60.000 4.18 0.00 46.11 6.53
43 44 0.729690 TCGAGTCTCTGATGACTGCG 59.270 55.000 12.42 13.76 46.11 5.18
44 45 2.929531 TTCGAGTCTCTGATGACTGC 57.070 50.000 12.42 5.95 46.11 4.40
45 46 3.704512 CCATTCGAGTCTCTGATGACTG 58.295 50.000 12.42 7.14 46.11 3.51
47 48 2.159184 TGCCATTCGAGTCTCTGATGAC 60.159 50.000 11.73 3.81 37.23 3.06
48 49 2.100418 CTGCCATTCGAGTCTCTGATGA 59.900 50.000 11.73 0.00 0.00 2.92
49 50 2.100418 TCTGCCATTCGAGTCTCTGATG 59.900 50.000 0.00 2.33 0.00 3.07
50 51 2.382882 TCTGCCATTCGAGTCTCTGAT 58.617 47.619 0.00 0.00 0.00 2.90
52 53 2.886862 ATCTGCCATTCGAGTCTCTG 57.113 50.000 0.00 0.00 0.00 3.35
53 54 3.055530 ACAAATCTGCCATTCGAGTCTCT 60.056 43.478 0.00 0.00 0.00 3.10
54 55 3.265791 ACAAATCTGCCATTCGAGTCTC 58.734 45.455 0.00 0.00 0.00 3.36
55 56 3.265791 GACAAATCTGCCATTCGAGTCT 58.734 45.455 0.00 0.00 0.00 3.24
56 57 2.029728 CGACAAATCTGCCATTCGAGTC 59.970 50.000 0.00 0.00 0.00 3.36
57 58 2.002586 CGACAAATCTGCCATTCGAGT 58.997 47.619 0.00 0.00 0.00 4.18
58 59 1.267732 GCGACAAATCTGCCATTCGAG 60.268 52.381 0.00 0.00 0.00 4.04
60 61 0.447406 TGCGACAAATCTGCCATTCG 59.553 50.000 0.00 0.00 0.00 3.34
61 62 1.796617 GCTGCGACAAATCTGCCATTC 60.797 52.381 0.00 0.00 0.00 2.67
64 65 1.579964 CTGCTGCGACAAATCTGCCA 61.580 55.000 0.00 0.00 0.00 4.92
66 67 1.136147 CCTGCTGCGACAAATCTGC 59.864 57.895 0.00 0.00 0.00 4.26
67 68 1.159285 TTCCTGCTGCGACAAATCTG 58.841 50.000 0.00 0.00 0.00 2.90
68 69 1.537202 GTTTCCTGCTGCGACAAATCT 59.463 47.619 0.00 0.00 0.00 2.40
69 70 1.725931 CGTTTCCTGCTGCGACAAATC 60.726 52.381 0.00 0.00 0.00 2.17
71 72 1.092921 ACGTTTCCTGCTGCGACAAA 61.093 50.000 0.00 0.00 0.00 2.83
73 74 2.108157 ACGTTTCCTGCTGCGACA 59.892 55.556 0.00 0.00 0.00 4.35
74 75 1.495584 TTCACGTTTCCTGCTGCGAC 61.496 55.000 0.00 0.00 0.00 5.19
75 76 0.812014 TTTCACGTTTCCTGCTGCGA 60.812 50.000 0.00 0.00 0.00 5.10
76 77 0.028770 TTTTCACGTTTCCTGCTGCG 59.971 50.000 0.00 0.00 0.00 5.18
78 79 2.223144 TCGATTTTCACGTTTCCTGCTG 59.777 45.455 0.00 0.00 0.00 4.41
80 81 2.961522 TCGATTTTCACGTTTCCTGC 57.038 45.000 0.00 0.00 0.00 4.85
81 82 4.158384 CCAATCGATTTTCACGTTTCCTG 58.842 43.478 8.21 0.00 0.00 3.86
82 83 3.818773 ACCAATCGATTTTCACGTTTCCT 59.181 39.130 8.21 0.00 0.00 3.36
83 84 3.911964 CACCAATCGATTTTCACGTTTCC 59.088 43.478 8.21 0.00 0.00 3.13
85 86 3.305110 GCACCAATCGATTTTCACGTTT 58.695 40.909 8.21 0.00 0.00 3.60
86 87 2.664424 CGCACCAATCGATTTTCACGTT 60.664 45.455 8.21 0.00 0.00 3.99
87 88 1.136085 CGCACCAATCGATTTTCACGT 60.136 47.619 8.21 0.00 0.00 4.49
89 90 1.466950 TCCGCACCAATCGATTTTCAC 59.533 47.619 8.21 0.00 0.00 3.18
90 91 1.466950 GTCCGCACCAATCGATTTTCA 59.533 47.619 8.21 0.00 0.00 2.69
91 92 1.466950 TGTCCGCACCAATCGATTTTC 59.533 47.619 8.21 0.00 0.00 2.29
94 95 1.016627 CATGTCCGCACCAATCGATT 58.983 50.000 4.39 4.39 0.00 3.34
95 96 0.107703 ACATGTCCGCACCAATCGAT 60.108 50.000 0.00 0.00 0.00 3.59
97 98 1.425031 CACATGTCCGCACCAATCG 59.575 57.895 0.00 0.00 0.00 3.34
99 100 0.895100 AAGCACATGTCCGCACCAAT 60.895 50.000 10.46 0.00 0.00 3.16
100 101 0.250510 TAAGCACATGTCCGCACCAA 60.251 50.000 10.46 0.00 0.00 3.67
101 102 0.035534 ATAAGCACATGTCCGCACCA 60.036 50.000 10.46 0.00 0.00 4.17
102 103 1.867233 CTATAAGCACATGTCCGCACC 59.133 52.381 10.46 0.00 0.00 5.01
103 104 1.261619 GCTATAAGCACATGTCCGCAC 59.738 52.381 10.46 0.00 41.89 5.34
104 105 1.581934 GCTATAAGCACATGTCCGCA 58.418 50.000 10.46 0.00 41.89 5.69
105 106 0.868406 GGCTATAAGCACATGTCCGC 59.132 55.000 0.00 0.00 44.75 5.54
107 108 2.498167 CCTGGCTATAAGCACATGTCC 58.502 52.381 0.00 0.00 44.75 4.02
108 109 2.498167 CCCTGGCTATAAGCACATGTC 58.502 52.381 0.00 0.00 44.75 3.06
109 110 1.477558 GCCCTGGCTATAAGCACATGT 60.478 52.381 0.00 0.00 44.75 3.21
110 111 1.242076 GCCCTGGCTATAAGCACATG 58.758 55.000 0.00 0.00 44.75 3.21
111 112 0.846015 TGCCCTGGCTATAAGCACAT 59.154 50.000 9.97 0.00 44.75 3.21
112 113 2.306124 TGCCCTGGCTATAAGCACA 58.694 52.632 9.97 0.00 44.75 4.57
113 114 2.707902 GTGCCCTGGCTATAAGCAC 58.292 57.895 9.97 7.56 44.75 4.40
115 116 0.469917 TCAGTGCCCTGGCTATAAGC 59.530 55.000 9.97 0.00 42.51 3.09
116 117 1.202698 GGTCAGTGCCCTGGCTATAAG 60.203 57.143 9.97 0.00 43.09 1.73
117 118 0.837272 GGTCAGTGCCCTGGCTATAA 59.163 55.000 9.97 0.00 43.09 0.98
118 119 0.031111 AGGTCAGTGCCCTGGCTATA 60.031 55.000 9.97 0.00 43.09 1.31
120 121 0.252513 TAAGGTCAGTGCCCTGGCTA 60.253 55.000 9.97 0.00 43.09 3.93
121 122 1.538876 TAAGGTCAGTGCCCTGGCT 60.539 57.895 9.97 0.00 43.09 4.75
123 124 1.079127 CGTAAGGTCAGTGCCCTGG 60.079 63.158 0.00 0.00 39.31 4.45
124 125 1.741770 GCGTAAGGTCAGTGCCCTG 60.742 63.158 0.00 0.00 37.75 4.45
125 126 2.663196 GCGTAAGGTCAGTGCCCT 59.337 61.111 0.00 0.00 38.28 5.19
135 136 4.475944 CAAATTGAGACCAAAGCGTAAGG 58.524 43.478 0.00 0.00 35.67 2.69
136 137 4.475944 CCAAATTGAGACCAAAGCGTAAG 58.524 43.478 0.00 0.00 35.67 2.34
137 138 3.305064 GCCAAATTGAGACCAAAGCGTAA 60.305 43.478 0.00 0.00 35.67 3.18
139 140 1.000274 GCCAAATTGAGACCAAAGCGT 60.000 47.619 0.00 0.00 35.67 5.07
140 141 1.000385 TGCCAAATTGAGACCAAAGCG 60.000 47.619 0.00 0.00 35.67 4.68
141 142 2.802247 GTTGCCAAATTGAGACCAAAGC 59.198 45.455 0.00 0.00 35.67 3.51
142 143 4.301628 GAGTTGCCAAATTGAGACCAAAG 58.698 43.478 0.00 0.00 35.67 2.77
143 144 3.069443 GGAGTTGCCAAATTGAGACCAAA 59.931 43.478 0.00 0.00 34.41 3.28
145 146 2.238521 GGAGTTGCCAAATTGAGACCA 58.761 47.619 0.00 0.00 36.34 4.02
146 147 2.238521 TGGAGTTGCCAAATTGAGACC 58.761 47.619 0.00 0.00 45.87 3.85
157 158 1.823169 TACACCCGACTGGAGTTGCC 61.823 60.000 0.00 0.00 38.94 4.52
159 160 1.607251 GGTTACACCCGACTGGAGTTG 60.607 57.143 0.00 0.00 38.94 3.16
161 162 2.359088 GGTTACACCCGACTGGAGT 58.641 57.895 0.00 0.00 41.27 3.85
170 171 1.451387 CCTCCATGCGGTTACACCC 60.451 63.158 0.00 0.00 33.75 4.61
171 172 1.024579 CACCTCCATGCGGTTACACC 61.025 60.000 2.46 0.00 30.82 4.16
172 173 0.036765 TCACCTCCATGCGGTTACAC 60.037 55.000 2.46 0.00 30.82 2.90
174 175 1.084289 GTTCACCTCCATGCGGTTAC 58.916 55.000 2.46 1.79 30.82 2.50
175 176 0.981183 AGTTCACCTCCATGCGGTTA 59.019 50.000 2.46 0.00 30.82 2.85
176 177 0.321653 GAGTTCACCTCCATGCGGTT 60.322 55.000 2.46 0.00 33.79 4.44
178 179 4.208632 GAGTTCACCTCCATGCGG 57.791 61.111 0.00 0.00 33.79 5.69
185 186 2.338500 GATGTTGTCGGAGTTCACCTC 58.662 52.381 0.00 0.00 39.67 3.85
197 198 8.858186 CATTATCTCTATCACATCGATGTTGTC 58.142 37.037 28.04 0.00 39.39 3.18
198 199 8.579863 TCATTATCTCTATCACATCGATGTTGT 58.420 33.333 28.04 20.38 39.39 3.32
199 200 8.976986 TCATTATCTCTATCACATCGATGTTG 57.023 34.615 28.04 21.46 39.39 3.33
200 201 9.416794 GTTCATTATCTCTATCACATCGATGTT 57.583 33.333 28.04 17.32 39.39 2.71
201 202 8.579863 TGTTCATTATCTCTATCACATCGATGT 58.420 33.333 25.18 25.18 42.84 3.06
206 207 8.449397 GCCATTGTTCATTATCTCTATCACATC 58.551 37.037 0.00 0.00 0.00 3.06
207 208 7.118825 CGCCATTGTTCATTATCTCTATCACAT 59.881 37.037 0.00 0.00 0.00 3.21
208 209 6.424812 CGCCATTGTTCATTATCTCTATCACA 59.575 38.462 0.00 0.00 0.00 3.58
209 210 6.128445 CCGCCATTGTTCATTATCTCTATCAC 60.128 42.308 0.00 0.00 0.00 3.06
210 211 5.934043 CCGCCATTGTTCATTATCTCTATCA 59.066 40.000 0.00 0.00 0.00 2.15
211 212 5.934625 ACCGCCATTGTTCATTATCTCTATC 59.065 40.000 0.00 0.00 0.00 2.08
212 213 5.869579 ACCGCCATTGTTCATTATCTCTAT 58.130 37.500 0.00 0.00 0.00 1.98
213 214 5.290493 ACCGCCATTGTTCATTATCTCTA 57.710 39.130 0.00 0.00 0.00 2.43
214 215 4.156455 ACCGCCATTGTTCATTATCTCT 57.844 40.909 0.00 0.00 0.00 3.10
215 216 4.601019 CAACCGCCATTGTTCATTATCTC 58.399 43.478 0.00 0.00 0.00 2.75
216 217 3.181487 GCAACCGCCATTGTTCATTATCT 60.181 43.478 0.00 0.00 31.83 1.98
217 218 3.115554 GCAACCGCCATTGTTCATTATC 58.884 45.455 0.00 0.00 31.83 1.75
218 219 2.760092 AGCAACCGCCATTGTTCATTAT 59.240 40.909 0.00 0.00 39.83 1.28
219 220 2.163412 GAGCAACCGCCATTGTTCATTA 59.837 45.455 6.58 0.00 39.04 1.90
221 222 0.527565 GAGCAACCGCCATTGTTCAT 59.472 50.000 6.58 0.00 39.04 2.57
222 223 0.537143 AGAGCAACCGCCATTGTTCA 60.537 50.000 12.14 0.00 40.98 3.18
225 226 0.598065 GAAAGAGCAACCGCCATTGT 59.402 50.000 0.00 0.00 39.83 2.71
227 228 1.586154 CCGAAAGAGCAACCGCCATT 61.586 55.000 0.00 0.00 39.83 3.16
228 229 2.040544 CCGAAAGAGCAACCGCCAT 61.041 57.895 0.00 0.00 39.83 4.40
229 230 2.668212 CCGAAAGAGCAACCGCCA 60.668 61.111 0.00 0.00 39.83 5.69
230 231 2.668550 ACCGAAAGAGCAACCGCC 60.669 61.111 0.00 0.00 39.83 6.13
231 232 0.389426 TAGACCGAAAGAGCAACCGC 60.389 55.000 0.00 0.00 38.99 5.68
232 233 2.194271 GATAGACCGAAAGAGCAACCG 58.806 52.381 0.00 0.00 0.00 4.44
249 250 4.751060 AGCATCAAAAACTACCGTCGATA 58.249 39.130 0.00 0.00 0.00 2.92
251 252 3.034721 AGCATCAAAAACTACCGTCGA 57.965 42.857 0.00 0.00 0.00 4.20
252 253 6.764877 ATATAGCATCAAAAACTACCGTCG 57.235 37.500 0.00 0.00 0.00 5.12
253 254 9.419297 TGATATATAGCATCAAAAACTACCGTC 57.581 33.333 0.00 0.00 29.55 4.79
254 255 9.204570 GTGATATATAGCATCAAAAACTACCGT 57.795 33.333 3.63 0.00 34.32 4.83
255 256 8.656849 GGTGATATATAGCATCAAAAACTACCG 58.343 37.037 6.37 0.00 34.32 4.02
256 257 9.726438 AGGTGATATATAGCATCAAAAACTACC 57.274 33.333 13.48 2.05 34.32 3.18
260 261 7.535258 CGCAAGGTGATATATAGCATCAAAAAC 59.465 37.037 13.48 0.00 34.32 2.43
264 265 5.793817 ACGCAAGGTGATATATAGCATCAA 58.206 37.500 13.48 0.00 46.39 2.57
265 266 5.405935 ACGCAAGGTGATATATAGCATCA 57.594 39.130 13.48 0.00 46.39 3.07
280 281 1.501741 CGGGAAATCACACGCAAGG 59.498 57.895 0.00 0.00 46.39 3.61
285 286 3.691049 AAATATGCGGGAAATCACACG 57.309 42.857 0.00 0.00 39.86 4.49
306 307 5.719085 AGTCTCTCTAGAAGGATGCTCAAAA 59.281 40.000 0.00 0.00 32.16 2.44
307 308 5.268387 AGTCTCTCTAGAAGGATGCTCAAA 58.732 41.667 0.00 0.00 32.16 2.69
309 310 4.518278 AGTCTCTCTAGAAGGATGCTCA 57.482 45.455 0.00 0.00 32.16 4.26
313 314 6.922957 GCACAATTAGTCTCTCTAGAAGGATG 59.077 42.308 0.00 0.00 32.16 3.51
315 316 6.191315 AGCACAATTAGTCTCTCTAGAAGGA 58.809 40.000 0.00 0.00 32.16 3.36
316 317 6.463995 AGCACAATTAGTCTCTCTAGAAGG 57.536 41.667 0.00 0.00 32.16 3.46
318 319 7.780271 TGGATAGCACAATTAGTCTCTCTAGAA 59.220 37.037 0.00 0.00 32.16 2.10
320 321 7.517614 TGGATAGCACAATTAGTCTCTCTAG 57.482 40.000 0.00 0.00 0.00 2.43
322 323 6.552725 TCATGGATAGCACAATTAGTCTCTCT 59.447 38.462 0.00 0.00 0.00 3.10
323 324 6.753180 TCATGGATAGCACAATTAGTCTCTC 58.247 40.000 0.00 0.00 0.00 3.20
325 326 7.976135 AATCATGGATAGCACAATTAGTCTC 57.024 36.000 0.00 0.00 0.00 3.36
326 327 9.499479 CTAAATCATGGATAGCACAATTAGTCT 57.501 33.333 0.00 0.00 0.00 3.24
329 330 8.332996 AGCTAAATCATGGATAGCACAATTAG 57.667 34.615 20.08 3.76 43.48 1.73
330 331 9.791801 TTAGCTAAATCATGGATAGCACAATTA 57.208 29.630 20.08 7.25 43.48 1.40
331 332 8.696043 TTAGCTAAATCATGGATAGCACAATT 57.304 30.769 20.08 7.93 43.48 2.32
333 334 8.696043 ATTTAGCTAAATCATGGATAGCACAA 57.304 30.769 23.22 14.48 43.48 3.33
336 337 7.309377 GCCAATTTAGCTAAATCATGGATAGCA 60.309 37.037 34.37 10.11 43.48 3.49
337 338 7.031975 GCCAATTTAGCTAAATCATGGATAGC 58.968 38.462 34.37 22.77 41.81 2.97
338 339 8.345724 AGCCAATTTAGCTAAATCATGGATAG 57.654 34.615 34.37 19.12 39.29 2.08
342 343 7.750229 TCTAGCCAATTTAGCTAAATCATGG 57.250 36.000 29.82 29.82 42.07 3.66
343 344 8.844244 ACTTCTAGCCAATTTAGCTAAATCATG 58.156 33.333 27.56 22.41 42.07 3.07
344 345 8.986929 ACTTCTAGCCAATTTAGCTAAATCAT 57.013 30.769 27.56 13.65 42.07 2.45
345 346 9.899661 TTACTTCTAGCCAATTTAGCTAAATCA 57.100 29.630 27.56 12.48 42.07 2.57
347 348 9.343539 CCTTACTTCTAGCCAATTTAGCTAAAT 57.656 33.333 23.22 23.22 42.07 1.40
351 352 6.116126 CACCTTACTTCTAGCCAATTTAGCT 58.884 40.000 5.16 5.16 44.49 3.32
352 353 5.880887 ACACCTTACTTCTAGCCAATTTAGC 59.119 40.000 0.00 0.00 0.00 3.09
353 354 9.046296 CATACACCTTACTTCTAGCCAATTTAG 57.954 37.037 0.00 0.00 0.00 1.85
354 355 7.497909 GCATACACCTTACTTCTAGCCAATTTA 59.502 37.037 0.00 0.00 0.00 1.40
355 356 6.318900 GCATACACCTTACTTCTAGCCAATTT 59.681 38.462 0.00 0.00 0.00 1.82
357 358 5.104527 TGCATACACCTTACTTCTAGCCAAT 60.105 40.000 0.00 0.00 0.00 3.16
360 361 4.372656 CTGCATACACCTTACTTCTAGCC 58.627 47.826 0.00 0.00 0.00 3.93
361 362 4.372656 CCTGCATACACCTTACTTCTAGC 58.627 47.826 0.00 0.00 0.00 3.42
362 363 4.406003 ACCCTGCATACACCTTACTTCTAG 59.594 45.833 0.00 0.00 0.00 2.43
364 365 3.055094 CACCCTGCATACACCTTACTTCT 60.055 47.826 0.00 0.00 0.00 2.85
365 366 3.270877 CACCCTGCATACACCTTACTTC 58.729 50.000 0.00 0.00 0.00 3.01
367 368 1.559682 CCACCCTGCATACACCTTACT 59.440 52.381 0.00 0.00 0.00 2.24
368 369 1.557832 TCCACCCTGCATACACCTTAC 59.442 52.381 0.00 0.00 0.00 2.34
370 371 1.064463 CATCCACCCTGCATACACCTT 60.064 52.381 0.00 0.00 0.00 3.50
371 372 0.548031 CATCCACCCTGCATACACCT 59.452 55.000 0.00 0.00 0.00 4.00
372 373 0.546122 TCATCCACCCTGCATACACC 59.454 55.000 0.00 0.00 0.00 4.16
373 374 2.418368 TTCATCCACCCTGCATACAC 57.582 50.000 0.00 0.00 0.00 2.90
375 376 4.685924 CATTTTTCATCCACCCTGCATAC 58.314 43.478 0.00 0.00 0.00 2.39
376 377 3.132646 GCATTTTTCATCCACCCTGCATA 59.867 43.478 0.00 0.00 0.00 3.14
378 379 1.275856 GCATTTTTCATCCACCCTGCA 59.724 47.619 0.00 0.00 0.00 4.41
380 381 2.354003 GGTGCATTTTTCATCCACCCTG 60.354 50.000 0.00 0.00 39.95 4.45
381 382 1.901833 GGTGCATTTTTCATCCACCCT 59.098 47.619 0.00 0.00 39.95 4.34
382 383 2.385013 GGTGCATTTTTCATCCACCC 57.615 50.000 0.00 0.00 39.95 4.61
383 384 1.066215 GGGGTGCATTTTTCATCCACC 60.066 52.381 0.00 0.00 43.95 4.61
385 386 1.274712 GGGGGTGCATTTTTCATCCA 58.725 50.000 0.00 0.00 36.44 3.41
386 387 1.207811 CTGGGGGTGCATTTTTCATCC 59.792 52.381 0.00 0.00 33.98 3.51
387 388 2.167075 CTCTGGGGGTGCATTTTTCATC 59.833 50.000 0.00 0.00 0.00 2.92
388 389 2.181975 CTCTGGGGGTGCATTTTTCAT 58.818 47.619 0.00 0.00 0.00 2.57
389 390 1.146774 TCTCTGGGGGTGCATTTTTCA 59.853 47.619 0.00 0.00 0.00 2.69
390 391 1.546029 GTCTCTGGGGGTGCATTTTTC 59.454 52.381 0.00 0.00 0.00 2.29
391 392 1.147817 AGTCTCTGGGGGTGCATTTTT 59.852 47.619 0.00 0.00 0.00 1.94
393 394 0.038744 CAGTCTCTGGGGGTGCATTT 59.961 55.000 0.00 0.00 0.00 2.32
395 396 1.136329 AACAGTCTCTGGGGGTGCAT 61.136 55.000 0.00 0.00 35.51 3.96
396 397 1.770110 AACAGTCTCTGGGGGTGCA 60.770 57.895 1.90 0.00 35.51 4.57
397 398 1.302832 CAACAGTCTCTGGGGGTGC 60.303 63.158 1.90 0.00 35.51 5.01
398 399 0.987294 ATCAACAGTCTCTGGGGGTG 59.013 55.000 1.90 0.00 35.51 4.61
399 400 2.188817 GTATCAACAGTCTCTGGGGGT 58.811 52.381 1.90 0.00 35.51 4.95
400 401 2.432510 GAGTATCAACAGTCTCTGGGGG 59.567 54.545 1.90 0.00 32.77 5.40
402 403 4.221703 ACAAGAGTATCAACAGTCTCTGGG 59.778 45.833 1.90 0.00 37.35 4.45
403 404 5.398603 ACAAGAGTATCAACAGTCTCTGG 57.601 43.478 1.90 0.00 37.35 3.86
404 405 8.818141 TTTTACAAGAGTATCAACAGTCTCTG 57.182 34.615 0.00 0.00 37.35 3.35
436 437 8.234136 ACTCTTTATTGCAATGTGATCATCAT 57.766 30.769 22.27 1.73 32.56 2.45
439 440 9.570468 AGATACTCTTTATTGCAATGTGATCAT 57.430 29.630 22.27 11.47 35.59 2.45
441 442 9.661187 CAAGATACTCTTTATTGCAATGTGATC 57.339 33.333 22.27 13.19 33.78 2.92
442 443 9.399797 TCAAGATACTCTTTATTGCAATGTGAT 57.600 29.630 22.27 5.50 33.78 3.06
443 444 8.791327 TCAAGATACTCTTTATTGCAATGTGA 57.209 30.769 22.27 14.63 33.78 3.58
444 445 9.447040 CATCAAGATACTCTTTATTGCAATGTG 57.553 33.333 22.27 11.30 33.78 3.21
508 509 4.748409 GCCCTGCGCAAAAGAAAA 57.252 50.000 13.05 0.00 37.47 2.29
517 518 4.575973 ATCCTCCATGCCCTGCGC 62.576 66.667 0.00 0.00 38.31 6.09
518 519 2.593725 CATCCTCCATGCCCTGCG 60.594 66.667 0.00 0.00 0.00 5.18
525 526 1.676746 CCACTCAAGCATCCTCCATG 58.323 55.000 0.00 0.00 35.29 3.66
527 528 1.993653 CCCACTCAAGCATCCTCCA 59.006 57.895 0.00 0.00 0.00 3.86
529 530 1.452833 GGCCCACTCAAGCATCCTC 60.453 63.158 0.00 0.00 0.00 3.71
530 531 1.927527 AGGCCCACTCAAGCATCCT 60.928 57.895 0.00 0.00 0.00 3.24
531 532 1.751927 CAGGCCCACTCAAGCATCC 60.752 63.158 0.00 0.00 0.00 3.51
532 533 1.751927 CCAGGCCCACTCAAGCATC 60.752 63.158 0.00 0.00 0.00 3.91
533 534 2.357836 CCAGGCCCACTCAAGCAT 59.642 61.111 0.00 0.00 0.00 3.79
534 535 3.177884 ACCAGGCCCACTCAAGCA 61.178 61.111 0.00 0.00 0.00 3.91
535 536 2.674380 CACCAGGCCCACTCAAGC 60.674 66.667 0.00 0.00 0.00 4.01
536 537 2.674380 GCACCAGGCCCACTCAAG 60.674 66.667 0.00 0.00 36.11 3.02
537 538 2.844195 ATGCACCAGGCCCACTCAA 61.844 57.895 0.00 0.00 43.89 3.02
538 539 3.259314 ATGCACCAGGCCCACTCA 61.259 61.111 0.00 0.00 43.89 3.41
539 540 2.753043 CATGCACCAGGCCCACTC 60.753 66.667 0.00 0.00 43.89 3.51
544 545 2.175035 ATTTGTGCATGCACCAGGCC 62.175 55.000 40.01 20.58 45.63 5.19
546 547 1.001068 TGAATTTGTGCATGCACCAGG 59.999 47.619 40.01 0.00 45.63 4.45
547 548 2.442212 TGAATTTGTGCATGCACCAG 57.558 45.000 40.01 0.00 45.63 4.00
548 549 2.613223 CCATGAATTTGTGCATGCACCA 60.613 45.455 40.01 31.16 45.63 4.17
549 550 2.004017 CCATGAATTTGTGCATGCACC 58.996 47.619 40.01 27.23 45.63 5.01
550 551 2.962125 TCCATGAATTTGTGCATGCAC 58.038 42.857 38.00 38.00 46.33 4.57
552 553 7.949903 TTTATATCCATGAATTTGTGCATGC 57.050 32.000 11.82 11.82 40.33 4.06
553 554 9.699703 TCATTTATATCCATGAATTTGTGCATG 57.300 29.630 0.00 0.00 41.11 4.06
555 556 8.693625 TGTCATTTATATCCATGAATTTGTGCA 58.306 29.630 0.00 0.00 31.14 4.57
556 557 9.531942 TTGTCATTTATATCCATGAATTTGTGC 57.468 29.630 0.00 0.00 31.14 4.57
571 572 9.679661 TGCTCCTTTATGAGTTTGTCATTTATA 57.320 29.630 0.00 0.00 44.05 0.98
572 573 8.579850 TGCTCCTTTATGAGTTTGTCATTTAT 57.420 30.769 0.00 0.00 44.05 1.40
573 574 7.665559 ACTGCTCCTTTATGAGTTTGTCATTTA 59.334 33.333 0.00 0.00 44.05 1.40
575 576 6.006449 ACTGCTCCTTTATGAGTTTGTCATT 58.994 36.000 0.00 0.00 44.05 2.57
577 578 4.973168 ACTGCTCCTTTATGAGTTTGTCA 58.027 39.130 0.00 0.00 40.38 3.58
578 579 4.393371 GGACTGCTCCTTTATGAGTTTGTC 59.607 45.833 0.00 0.00 34.74 3.18
579 580 4.327680 GGACTGCTCCTTTATGAGTTTGT 58.672 43.478 0.00 0.00 34.74 2.83
580 581 3.372206 CGGACTGCTCCTTTATGAGTTTG 59.628 47.826 0.00 0.00 33.79 2.93
581 582 3.008049 ACGGACTGCTCCTTTATGAGTTT 59.992 43.478 0.00 0.00 33.79 2.66
638 639 1.526917 GTGGCTTCGATGGATGGGG 60.527 63.158 0.00 0.00 0.00 4.96
679 680 1.376295 GGCATAAACCGACGGTGGT 60.376 57.895 22.53 14.40 46.67 4.16
755 758 1.063972 CCAAGAGAGAGAGAGCGCG 59.936 63.158 0.00 0.00 0.00 6.86
756 759 1.226945 GCCAAGAGAGAGAGAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
852 2763 0.883833 GTCGGTCTTGGTCGAAGGTA 59.116 55.000 0.00 0.00 37.14 3.08
1056 2973 0.250234 TCTCCTTGTTCCGCATCAGG 59.750 55.000 0.00 0.00 0.00 3.86
1093 3010 5.533769 AAGCCCCATGGGATGTACTTCAC 62.534 52.174 33.62 7.52 42.68 3.18
1129 3048 3.314307 ACGAATAGATCACAGGGGAGA 57.686 47.619 0.00 0.00 0.00 3.71
1273 3194 3.704566 AGCGAGTGGTGGTTTATGATCTA 59.295 43.478 0.00 0.00 0.00 1.98
1350 3311 6.293081 CGATGTAAAATCATCTCGATTGGCTT 60.293 38.462 0.00 0.00 43.83 4.35
1397 3358 2.102578 CCCTGTTGTTCATCATTCCCC 58.897 52.381 0.00 0.00 0.00 4.81
1805 3771 2.487086 GGCCCTCAAAATTTGGCAACTT 60.487 45.455 16.54 0.00 45.83 2.66
2031 4006 5.283457 AGCACTGACTATACCAAAGGATC 57.717 43.478 0.00 0.00 0.00 3.36
2037 4012 7.560262 AGTTACTCATAGCACTGACTATACCAA 59.440 37.037 0.00 0.00 31.56 3.67
2226 4204 6.370166 GCACTTCCTTCAGGATTATACATAGC 59.630 42.308 0.00 0.00 44.98 2.97
2533 4521 2.672195 GCTGAAGGTTAAGGCAATGTGC 60.672 50.000 0.00 0.00 44.08 4.57
2820 4812 6.605594 TGAACCAAATTTCTCCACAAAGTAGT 59.394 34.615 0.00 0.00 0.00 2.73
2846 4841 8.816894 TCAGAACAATCTCTTGAAGGTTAGTAT 58.183 33.333 0.00 0.00 36.20 2.12
2858 4853 5.757320 CAGTTGTGTCTCAGAACAATCTCTT 59.243 40.000 11.22 0.00 39.60 2.85
2914 4909 8.665685 CACCACCTCATAAGTTTTCTTGTATAC 58.334 37.037 0.00 0.00 40.70 1.47
2922 4917 5.253330 TCCATCACCACCTCATAAGTTTTC 58.747 41.667 0.00 0.00 0.00 2.29
2923 4918 5.255397 TCCATCACCACCTCATAAGTTTT 57.745 39.130 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.