Multiple sequence alignment - TraesCS1B01G156900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G156900 chr1B 100.000 8300 0 0 1 8300 265291541 265299840 0.000000e+00 15328.0
1 TraesCS1B01G156900 chr1B 97.674 86 2 0 6445 6530 265297901 265297986 1.870000e-31 148.0
2 TraesCS1B01G156900 chr1B 97.674 86 2 0 6361 6446 265297985 265298070 1.870000e-31 148.0
3 TraesCS1B01G156900 chr1D 96.194 5701 153 25 788 6446 191798919 191793241 0.000000e+00 9267.0
4 TraesCS1B01G156900 chr1D 93.914 1331 52 20 6445 7765 191793326 191792015 0.000000e+00 1982.0
5 TraesCS1B01G156900 chr1D 89.796 539 52 3 5 541 318549926 318550463 0.000000e+00 688.0
6 TraesCS1B01G156900 chr1D 89.239 539 55 3 5 541 378110558 378110021 0.000000e+00 671.0
7 TraesCS1B01G156900 chr1D 95.098 204 8 2 7804 8007 191792004 191791803 3.740000e-83 320.0
8 TraesCS1B01G156900 chr1D 91.480 223 7 5 8084 8300 191791803 191791587 6.300000e-76 296.0
9 TraesCS1B01G156900 chr1D 100.000 39 0 0 6585 6623 64215270 64215308 1.160000e-08 73.1
10 TraesCS1B01G156900 chr1D 100.000 39 0 0 6585 6623 142834137 142834175 1.160000e-08 73.1
11 TraesCS1B01G156900 chr1A 95.854 2653 72 15 785 3409 237520199 237517557 0.000000e+00 4255.0
12 TraesCS1B01G156900 chr1A 95.060 2166 79 14 3955 6107 237513214 237511064 0.000000e+00 3382.0
13 TraesCS1B01G156900 chr1A 95.061 1154 33 9 6445 7575 237510726 237509574 0.000000e+00 1794.0
14 TraesCS1B01G156900 chr1A 99.223 386 3 0 3572 3957 237513692 237513307 0.000000e+00 697.0
15 TraesCS1B01G156900 chr1A 96.199 342 12 1 6106 6446 237510982 237510641 7.280000e-155 558.0
16 TraesCS1B01G156900 chr1A 89.083 458 29 8 7571 8008 237509494 237509038 4.380000e-152 549.0
17 TraesCS1B01G156900 chr1A 92.784 291 17 4 8012 8300 237508924 237508636 1.290000e-112 418.0
18 TraesCS1B01G156900 chr1A 95.652 115 4 1 3463 3577 237517565 237517452 5.120000e-42 183.0
19 TraesCS1B01G156900 chr1A 95.556 45 2 0 6582 6626 533460791 533460747 1.160000e-08 73.1
20 TraesCS1B01G156900 chr4D 90.959 542 45 2 1 541 434971296 434970758 0.000000e+00 726.0
21 TraesCS1B01G156900 chr4D 89.668 542 52 4 2 541 348293427 348293966 0.000000e+00 688.0
22 TraesCS1B01G156900 chr7D 90.858 536 46 3 8 541 124641220 124640686 0.000000e+00 715.0
23 TraesCS1B01G156900 chr7D 83.884 242 22 8 4202 4438 108501237 108501466 1.810000e-51 215.0
24 TraesCS1B01G156900 chr7D 79.032 248 42 9 6582 6823 22653843 22654086 2.400000e-35 161.0
25 TraesCS1B01G156900 chr4B 90.741 540 40 7 6 541 348145323 348144790 0.000000e+00 712.0
26 TraesCS1B01G156900 chr7A 89.981 539 51 3 5 541 625375051 625374514 0.000000e+00 693.0
27 TraesCS1B01G156900 chr5D 89.630 540 52 4 5 541 407010736 407010198 0.000000e+00 684.0
28 TraesCS1B01G156900 chr3D 89.425 539 51 5 5 541 398413617 398413083 0.000000e+00 675.0
29 TraesCS1B01G156900 chr3D 91.667 48 2 2 6582 6629 365800391 365800346 1.930000e-06 65.8
30 TraesCS1B01G156900 chr6A 84.762 105 13 3 6585 6688 459074294 459074192 1.470000e-17 102.0
31 TraesCS1B01G156900 chr3B 77.305 141 28 4 624 762 596846790 596846652 6.910000e-11 80.5
32 TraesCS1B01G156900 chr6D 100.000 36 0 0 6588 6623 194410808 194410773 5.380000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G156900 chr1B 265291541 265299840 8299 False 5208.00 15328 98.449333 1 8300 3 chr1B.!!$F1 8299
1 TraesCS1B01G156900 chr1D 191791587 191798919 7332 True 2966.25 9267 94.171500 788 8300 4 chr1D.!!$R2 7512
2 TraesCS1B01G156900 chr1D 318549926 318550463 537 False 688.00 688 89.796000 5 541 1 chr1D.!!$F3 536
3 TraesCS1B01G156900 chr1D 378110021 378110558 537 True 671.00 671 89.239000 5 541 1 chr1D.!!$R1 536
4 TraesCS1B01G156900 chr1A 237508636 237520199 11563 True 1479.50 4255 94.864500 785 8300 8 chr1A.!!$R2 7515
5 TraesCS1B01G156900 chr4D 434970758 434971296 538 True 726.00 726 90.959000 1 541 1 chr4D.!!$R1 540
6 TraesCS1B01G156900 chr4D 348293427 348293966 539 False 688.00 688 89.668000 2 541 1 chr4D.!!$F1 539
7 TraesCS1B01G156900 chr7D 124640686 124641220 534 True 715.00 715 90.858000 8 541 1 chr7D.!!$R1 533
8 TraesCS1B01G156900 chr4B 348144790 348145323 533 True 712.00 712 90.741000 6 541 1 chr4B.!!$R1 535
9 TraesCS1B01G156900 chr7A 625374514 625375051 537 True 693.00 693 89.981000 5 541 1 chr7A.!!$R1 536
10 TraesCS1B01G156900 chr5D 407010198 407010736 538 True 684.00 684 89.630000 5 541 1 chr5D.!!$R1 536
11 TraesCS1B01G156900 chr3D 398413083 398413617 534 True 675.00 675 89.425000 5 541 1 chr3D.!!$R2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 653 0.036765 CTAGCTGGCCACACGGTAAA 60.037 55.000 0.00 0.00 33.28 2.01 F
1600 1610 0.390866 ACAGCATGCTCTGAAGTCCG 60.391 55.000 19.68 5.73 42.53 4.79 F
1762 1788 1.470098 GCTGACCATCGAAATGTTGCT 59.530 47.619 0.00 0.00 0.00 3.91 F
3401 3438 0.707024 TCAGGCTCAGGAGAAGAGGA 59.293 55.000 0.00 0.00 33.72 3.71 F
5040 8944 1.044725 GTTGTGCGCATTTGACTTCG 58.955 50.000 15.91 0.00 0.00 3.79 F
5147 9052 2.420687 GCCATAGTCTGCCTAAACTGCT 60.421 50.000 0.00 0.00 0.00 4.24 F
6441 10442 2.441375 TGTCTGTTGATTCCCTTGACCA 59.559 45.455 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1752 1.791555 GCAACATTTCGATGGTCAGCG 60.792 52.381 1.93 1.93 42.20 5.18 R
3401 3438 3.514309 AGGAATACAAGTACGACAGGCTT 59.486 43.478 0.00 0.00 0.00 4.35 R
3612 7414 4.079253 TGAAAAAGACAGGCCTTACATCC 58.921 43.478 0.00 0.00 0.00 3.51 R
5326 9242 0.538057 TCCTTTGCTGCAGGTTCCTG 60.538 55.000 17.12 13.88 37.15 3.86 R
7018 11026 0.626382 TGGTTGTGGAAGGGTTCACA 59.374 50.000 0.00 0.00 41.47 3.58 R
7020 11028 1.216678 ACATGGTTGTGGAAGGGTTCA 59.783 47.619 0.00 0.00 33.85 3.18 R
8098 12338 1.753930 TCGTGATAACGAGCTACCCA 58.246 50.000 0.00 0.00 37.20 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.789075 GTCGACGCCCGCAAGCTA 62.789 66.667 0.00 0.00 38.37 3.32
75 76 3.311322 CCCGCAAGCTATTCGACAATTTA 59.689 43.478 4.09 0.00 0.00 1.40
127 128 6.128526 CGAGTTCTTCTTCCACAATTTCCTAC 60.129 42.308 0.00 0.00 0.00 3.18
227 232 4.395519 CCATTGTTCCGTGGCTGA 57.604 55.556 0.00 0.00 0.00 4.26
229 234 0.321564 CCATTGTTCCGTGGCTGAGA 60.322 55.000 0.00 0.00 0.00 3.27
271 276 2.289010 TGAATCGCAACTGAGAGAGCAA 60.289 45.455 0.00 0.00 0.00 3.91
333 339 4.209452 TCGCTGTTCAAACATCAGAAAC 57.791 40.909 0.00 0.00 38.41 2.78
433 440 0.405198 TGCAAAGAGGATGCCCTTGA 59.595 50.000 0.00 0.00 44.53 3.02
482 489 0.179037 GCACTGCAGCCATCCAGATA 60.179 55.000 15.27 0.00 33.40 1.98
488 495 1.224075 CAGCCATCCAGATACTTGCG 58.776 55.000 0.00 0.00 0.00 4.85
534 541 4.207955 TGATGAGTAAGTCCGTATGAGCT 58.792 43.478 0.00 0.00 0.00 4.09
541 548 6.590068 AGTAAGTCCGTATGAGCTAGTCTAA 58.410 40.000 0.00 0.00 0.00 2.10
542 549 7.225725 AGTAAGTCCGTATGAGCTAGTCTAAT 58.774 38.462 0.00 0.00 0.00 1.73
543 550 6.963083 AAGTCCGTATGAGCTAGTCTAATT 57.037 37.500 0.00 0.00 0.00 1.40
544 551 6.963083 AGTCCGTATGAGCTAGTCTAATTT 57.037 37.500 0.00 0.00 0.00 1.82
545 552 8.461249 AAGTCCGTATGAGCTAGTCTAATTTA 57.539 34.615 0.00 0.00 0.00 1.40
546 553 8.638629 AGTCCGTATGAGCTAGTCTAATTTAT 57.361 34.615 0.00 0.00 0.00 1.40
547 554 8.732531 AGTCCGTATGAGCTAGTCTAATTTATC 58.267 37.037 0.00 0.00 0.00 1.75
548 555 8.732531 GTCCGTATGAGCTAGTCTAATTTATCT 58.267 37.037 0.00 0.00 0.00 1.98
549 556 8.731605 TCCGTATGAGCTAGTCTAATTTATCTG 58.268 37.037 0.00 0.00 0.00 2.90
550 557 7.971168 CCGTATGAGCTAGTCTAATTTATCTGG 59.029 40.741 0.00 0.00 0.00 3.86
551 558 8.516234 CGTATGAGCTAGTCTAATTTATCTGGT 58.484 37.037 0.00 0.00 0.00 4.00
554 561 8.306313 TGAGCTAGTCTAATTTATCTGGTTGA 57.694 34.615 0.00 0.00 0.00 3.18
555 562 8.758829 TGAGCTAGTCTAATTTATCTGGTTGAA 58.241 33.333 0.00 0.00 0.00 2.69
556 563 9.601217 GAGCTAGTCTAATTTATCTGGTTGAAA 57.399 33.333 0.00 0.00 0.00 2.69
557 564 9.384764 AGCTAGTCTAATTTATCTGGTTGAAAC 57.615 33.333 0.00 0.00 0.00 2.78
558 565 9.384764 GCTAGTCTAATTTATCTGGTTGAAACT 57.615 33.333 0.00 0.00 0.00 2.66
595 602 7.783090 ACATGTTTGTTTGTGAAATAATGCA 57.217 28.000 0.00 0.00 29.55 3.96
596 603 8.206325 ACATGTTTGTTTGTGAAATAATGCAA 57.794 26.923 0.00 0.00 29.55 4.08
597 604 8.671921 ACATGTTTGTTTGTGAAATAATGCAAA 58.328 25.926 0.00 0.00 29.55 3.68
598 605 9.499585 CATGTTTGTTTGTGAAATAATGCAAAA 57.500 25.926 0.00 0.00 33.43 2.44
607 614 9.526713 TTGTGAAATAATGCAAAATATATGCGT 57.473 25.926 0.00 5.81 46.76 5.24
625 632 5.983790 TGCGTATTTATTGAAAAACAGCG 57.016 34.783 0.00 0.00 0.00 5.18
626 633 4.854291 TGCGTATTTATTGAAAAACAGCGG 59.146 37.500 0.00 0.00 0.00 5.52
627 634 4.259253 GCGTATTTATTGAAAAACAGCGGC 60.259 41.667 0.00 0.00 0.00 6.53
628 635 5.092781 CGTATTTATTGAAAAACAGCGGCT 58.907 37.500 0.00 0.00 0.00 5.52
629 636 6.252281 CGTATTTATTGAAAAACAGCGGCTA 58.748 36.000 0.26 0.00 0.00 3.93
630 637 6.410914 CGTATTTATTGAAAAACAGCGGCTAG 59.589 38.462 0.26 0.00 0.00 3.42
643 650 4.394712 GCTAGCTGGCCACACGGT 62.395 66.667 11.66 0.00 33.28 4.83
644 651 3.014085 GCTAGCTGGCCACACGGTA 62.014 63.158 11.66 1.07 33.28 4.02
645 652 1.594833 CTAGCTGGCCACACGGTAA 59.405 57.895 0.00 0.00 33.28 2.85
646 653 0.036765 CTAGCTGGCCACACGGTAAA 60.037 55.000 0.00 0.00 33.28 2.01
647 654 0.616371 TAGCTGGCCACACGGTAAAT 59.384 50.000 0.00 0.00 33.28 1.40
648 655 0.616371 AGCTGGCCACACGGTAAATA 59.384 50.000 0.00 0.00 33.28 1.40
649 656 1.211949 AGCTGGCCACACGGTAAATAT 59.788 47.619 0.00 0.00 33.28 1.28
650 657 1.333619 GCTGGCCACACGGTAAATATG 59.666 52.381 0.00 0.00 33.28 1.78
651 658 1.946768 CTGGCCACACGGTAAATATGG 59.053 52.381 0.00 0.00 33.28 2.74
652 659 1.314730 GGCCACACGGTAAATATGGG 58.685 55.000 0.00 0.00 33.28 4.00
653 660 1.409101 GGCCACACGGTAAATATGGGT 60.409 52.381 0.00 0.00 33.28 4.51
654 661 1.944709 GCCACACGGTAAATATGGGTC 59.055 52.381 0.00 0.00 33.28 4.46
655 662 2.681390 GCCACACGGTAAATATGGGTCA 60.681 50.000 0.00 0.00 33.28 4.02
656 663 3.202906 CCACACGGTAAATATGGGTCAG 58.797 50.000 0.00 0.00 0.00 3.51
657 664 2.612212 CACACGGTAAATATGGGTCAGC 59.388 50.000 0.00 0.00 0.00 4.26
658 665 1.864711 CACGGTAAATATGGGTCAGCG 59.135 52.381 0.00 0.00 36.29 5.18
659 666 0.865769 CGGTAAATATGGGTCAGCGC 59.134 55.000 0.00 0.00 0.00 5.92
660 667 0.865769 GGTAAATATGGGTCAGCGCG 59.134 55.000 0.00 0.00 0.00 6.86
661 668 1.578583 GTAAATATGGGTCAGCGCGT 58.421 50.000 8.43 0.00 0.00 6.01
662 669 1.937899 GTAAATATGGGTCAGCGCGTT 59.062 47.619 8.43 0.00 0.00 4.84
663 670 0.732571 AAATATGGGTCAGCGCGTTG 59.267 50.000 17.58 17.58 0.00 4.10
664 671 1.095228 AATATGGGTCAGCGCGTTGG 61.095 55.000 22.99 5.26 0.00 3.77
665 672 2.940890 ATATGGGTCAGCGCGTTGGG 62.941 60.000 22.99 0.00 0.00 4.12
668 675 4.980805 GGTCAGCGCGTTGGGTGA 62.981 66.667 22.99 5.07 41.72 4.02
669 676 2.970324 GTCAGCGCGTTGGGTGAA 60.970 61.111 22.99 0.00 45.03 3.18
670 677 2.203084 TCAGCGCGTTGGGTGAAA 60.203 55.556 22.99 0.00 41.09 2.69
671 678 1.599518 TCAGCGCGTTGGGTGAAAT 60.600 52.632 22.99 0.00 41.09 2.17
672 679 1.442520 CAGCGCGTTGGGTGAAATG 60.443 57.895 15.84 0.00 37.61 2.32
673 680 2.804931 GCGCGTTGGGTGAAATGC 60.805 61.111 8.43 0.00 38.46 3.56
674 681 2.126502 CGCGTTGGGTGAAATGCC 60.127 61.111 0.00 0.00 38.58 4.40
675 682 2.126502 GCGTTGGGTGAAATGCCG 60.127 61.111 0.00 0.00 36.29 5.69
676 683 2.622011 GCGTTGGGTGAAATGCCGA 61.622 57.895 0.00 0.00 36.29 5.54
677 684 1.209127 CGTTGGGTGAAATGCCGAC 59.791 57.895 0.00 0.00 0.00 4.79
678 685 1.584495 GTTGGGTGAAATGCCGACC 59.416 57.895 0.00 0.00 0.00 4.79
679 686 0.893727 GTTGGGTGAAATGCCGACCT 60.894 55.000 0.00 0.00 0.00 3.85
680 687 0.693622 TTGGGTGAAATGCCGACCTA 59.306 50.000 0.00 0.00 0.00 3.08
681 688 0.693622 TGGGTGAAATGCCGACCTAA 59.306 50.000 0.00 0.00 0.00 2.69
682 689 1.074084 TGGGTGAAATGCCGACCTAAA 59.926 47.619 0.00 0.00 0.00 1.85
683 690 2.291282 TGGGTGAAATGCCGACCTAAAT 60.291 45.455 0.00 0.00 0.00 1.40
684 691 2.099098 GGGTGAAATGCCGACCTAAATG 59.901 50.000 0.00 0.00 0.00 2.32
685 692 3.013921 GGTGAAATGCCGACCTAAATGA 58.986 45.455 0.00 0.00 0.00 2.57
686 693 3.632145 GGTGAAATGCCGACCTAAATGAT 59.368 43.478 0.00 0.00 0.00 2.45
687 694 4.819630 GGTGAAATGCCGACCTAAATGATA 59.180 41.667 0.00 0.00 0.00 2.15
688 695 5.298276 GGTGAAATGCCGACCTAAATGATAA 59.702 40.000 0.00 0.00 0.00 1.75
689 696 6.183360 GGTGAAATGCCGACCTAAATGATAAA 60.183 38.462 0.00 0.00 0.00 1.40
690 697 6.691388 GTGAAATGCCGACCTAAATGATAAAC 59.309 38.462 0.00 0.00 0.00 2.01
691 698 6.375736 TGAAATGCCGACCTAAATGATAAACA 59.624 34.615 0.00 0.00 0.00 2.83
692 699 6.767524 AATGCCGACCTAAATGATAAACAA 57.232 33.333 0.00 0.00 0.00 2.83
693 700 6.959639 ATGCCGACCTAAATGATAAACAAT 57.040 33.333 0.00 0.00 0.00 2.71
694 701 6.130298 TGCCGACCTAAATGATAAACAATG 57.870 37.500 0.00 0.00 0.00 2.82
695 702 4.976116 GCCGACCTAAATGATAAACAATGC 59.024 41.667 0.00 0.00 0.00 3.56
696 703 5.204833 CCGACCTAAATGATAAACAATGCG 58.795 41.667 0.00 0.00 0.00 4.73
697 704 5.204833 CGACCTAAATGATAAACAATGCGG 58.795 41.667 0.00 0.00 0.00 5.69
698 705 5.007234 CGACCTAAATGATAAACAATGCGGA 59.993 40.000 0.00 0.00 0.00 5.54
699 706 6.293407 CGACCTAAATGATAAACAATGCGGAT 60.293 38.462 0.00 0.00 0.00 4.18
700 707 6.738114 ACCTAAATGATAAACAATGCGGATG 58.262 36.000 0.00 0.00 0.00 3.51
701 708 5.630680 CCTAAATGATAAACAATGCGGATGC 59.369 40.000 0.00 0.00 43.20 3.91
702 709 3.648339 ATGATAAACAATGCGGATGCC 57.352 42.857 0.00 0.00 41.78 4.40
724 731 2.046700 GGGCGACCGATCCAAACA 60.047 61.111 0.00 0.00 43.64 2.83
725 732 2.106683 GGGCGACCGATCCAAACAG 61.107 63.158 0.00 0.00 43.64 3.16
726 733 1.079405 GGCGACCGATCCAAACAGA 60.079 57.895 0.00 0.00 0.00 3.41
727 734 1.359459 GGCGACCGATCCAAACAGAC 61.359 60.000 0.00 0.00 0.00 3.51
728 735 0.669318 GCGACCGATCCAAACAGACA 60.669 55.000 0.00 0.00 0.00 3.41
729 736 1.790755 CGACCGATCCAAACAGACAA 58.209 50.000 0.00 0.00 0.00 3.18
730 737 2.139917 CGACCGATCCAAACAGACAAA 58.860 47.619 0.00 0.00 0.00 2.83
731 738 2.546368 CGACCGATCCAAACAGACAAAA 59.454 45.455 0.00 0.00 0.00 2.44
732 739 3.002862 CGACCGATCCAAACAGACAAAAA 59.997 43.478 0.00 0.00 0.00 1.94
752 759 6.799786 AAAAATAGACAAAAACACCGTTCG 57.200 33.333 0.00 0.00 0.00 3.95
753 760 5.488645 AAATAGACAAAAACACCGTTCGT 57.511 34.783 0.00 0.00 0.00 3.85
754 761 5.488645 AATAGACAAAAACACCGTTCGTT 57.511 34.783 0.00 0.00 0.00 3.85
755 762 3.835378 AGACAAAAACACCGTTCGTTT 57.165 38.095 0.00 0.00 38.19 3.60
756 763 3.494232 AGACAAAAACACCGTTCGTTTG 58.506 40.909 0.00 0.00 36.71 2.93
757 764 2.595095 GACAAAAACACCGTTCGTTTGG 59.405 45.455 8.21 0.00 36.71 3.28
758 765 1.921230 CAAAAACACCGTTCGTTTGGG 59.079 47.619 0.00 0.00 36.71 4.12
759 766 1.175654 AAAACACCGTTCGTTTGGGT 58.824 45.000 0.00 0.00 36.71 4.51
760 767 0.734309 AAACACCGTTCGTTTGGGTC 59.266 50.000 0.00 0.00 35.31 4.46
761 768 1.430707 AACACCGTTCGTTTGGGTCG 61.431 55.000 0.00 0.00 29.82 4.79
762 769 1.592131 CACCGTTCGTTTGGGTCGA 60.592 57.895 0.00 0.00 35.50 4.20
763 770 1.592400 ACCGTTCGTTTGGGTCGAC 60.592 57.895 7.13 7.13 37.05 4.20
764 771 2.651137 CCGTTCGTTTGGGTCGACG 61.651 63.158 9.92 0.00 40.43 5.12
765 772 1.945662 CGTTCGTTTGGGTCGACGT 60.946 57.895 9.92 0.00 40.03 4.34
766 773 1.561250 GTTCGTTTGGGTCGACGTG 59.439 57.895 9.92 0.00 40.03 4.49
767 774 1.141449 TTCGTTTGGGTCGACGTGT 59.859 52.632 9.92 0.00 40.03 4.49
768 775 0.459934 TTCGTTTGGGTCGACGTGTT 60.460 50.000 9.92 0.00 40.03 3.32
769 776 1.146957 TCGTTTGGGTCGACGTGTTG 61.147 55.000 9.92 0.00 40.03 3.33
770 777 1.644913 GTTTGGGTCGACGTGTTGG 59.355 57.895 9.92 0.00 0.00 3.77
771 778 0.810823 GTTTGGGTCGACGTGTTGGA 60.811 55.000 9.92 0.00 0.00 3.53
772 779 0.531090 TTTGGGTCGACGTGTTGGAG 60.531 55.000 9.92 0.00 0.00 3.86
773 780 1.678598 TTGGGTCGACGTGTTGGAGT 61.679 55.000 9.92 0.00 0.00 3.85
774 781 1.068585 GGGTCGACGTGTTGGAGTT 59.931 57.895 9.92 0.00 0.00 3.01
775 782 1.219522 GGGTCGACGTGTTGGAGTTG 61.220 60.000 9.92 0.00 0.00 3.16
776 783 0.529119 GGTCGACGTGTTGGAGTTGT 60.529 55.000 9.92 0.00 0.00 3.32
777 784 1.283736 GTCGACGTGTTGGAGTTGTT 58.716 50.000 0.00 0.00 0.00 2.83
778 785 1.257155 GTCGACGTGTTGGAGTTGTTC 59.743 52.381 0.00 0.00 0.00 3.18
779 786 1.135527 TCGACGTGTTGGAGTTGTTCT 59.864 47.619 0.00 0.00 0.00 3.01
780 787 2.358582 TCGACGTGTTGGAGTTGTTCTA 59.641 45.455 0.00 0.00 0.00 2.10
781 788 3.117794 CGACGTGTTGGAGTTGTTCTAA 58.882 45.455 0.00 0.00 0.00 2.10
782 789 3.739300 CGACGTGTTGGAGTTGTTCTAAT 59.261 43.478 0.00 0.00 0.00 1.73
783 790 4.376008 CGACGTGTTGGAGTTGTTCTAATG 60.376 45.833 0.00 0.00 0.00 1.90
784 791 4.448210 ACGTGTTGGAGTTGTTCTAATGT 58.552 39.130 0.00 0.00 0.00 2.71
785 792 4.879545 ACGTGTTGGAGTTGTTCTAATGTT 59.120 37.500 0.00 0.00 0.00 2.71
786 793 5.355910 ACGTGTTGGAGTTGTTCTAATGTTT 59.644 36.000 0.00 0.00 0.00 2.83
811 818 3.445805 AGAATGTGACGGTTTTGGTTGTT 59.554 39.130 0.00 0.00 0.00 2.83
835 842 4.929211 TGGAACTTGATACTCACATCAACG 59.071 41.667 0.00 0.00 39.43 4.10
1264 1274 1.867233 CTGTCGTGTTGCTGCTTAAGT 59.133 47.619 4.02 0.00 0.00 2.24
1310 1320 1.370064 GGGACTGTGTACCGCAACT 59.630 57.895 0.00 0.00 0.00 3.16
1381 1391 3.353557 TGGTCTCGTGAGCTGTACTATT 58.646 45.455 16.60 0.00 40.98 1.73
1382 1392 3.128764 TGGTCTCGTGAGCTGTACTATTG 59.871 47.826 16.60 0.00 40.98 1.90
1600 1610 0.390866 ACAGCATGCTCTGAAGTCCG 60.391 55.000 19.68 5.73 42.53 4.79
1606 1616 2.035442 GCTCTGAAGTCCGTTGCCC 61.035 63.158 0.00 0.00 0.00 5.36
1619 1629 4.698780 GTCCGTTGCCCTAGAACTTTTATT 59.301 41.667 0.00 0.00 0.00 1.40
1624 1634 3.761752 TGCCCTAGAACTTTTATTGGTGC 59.238 43.478 0.00 0.00 0.00 5.01
1741 1752 3.223661 AGCTGTGCTGCTTACACTC 57.776 52.632 0.00 0.00 40.93 3.51
1762 1788 1.470098 GCTGACCATCGAAATGTTGCT 59.530 47.619 0.00 0.00 0.00 3.91
1763 1789 2.476854 GCTGACCATCGAAATGTTGCTC 60.477 50.000 0.00 0.00 0.00 4.26
1826 1852 2.285977 AGGACAAAAGTGGAACGTCAC 58.714 47.619 0.00 0.00 45.86 3.67
1828 1854 2.287103 GGACAAAAGTGGAACGTCACTC 59.713 50.000 10.04 0.00 46.17 3.51
1829 1855 2.933906 GACAAAAGTGGAACGTCACTCA 59.066 45.455 10.04 0.00 46.17 3.41
1830 1856 2.936498 ACAAAAGTGGAACGTCACTCAG 59.064 45.455 10.04 6.34 46.17 3.35
1831 1857 3.194861 CAAAAGTGGAACGTCACTCAGA 58.805 45.455 10.04 0.00 46.17 3.27
1832 1858 2.802787 AAGTGGAACGTCACTCAGAG 57.197 50.000 10.04 0.00 46.17 3.35
1833 1859 1.693627 AGTGGAACGTCACTCAGAGT 58.306 50.000 4.17 0.00 43.82 3.24
1851 1877 7.093068 ACTCAGAGTCTCAGACTATCAGAGTTA 60.093 40.741 7.42 0.00 43.53 2.24
1852 1878 7.801104 TCAGAGTCTCAGACTATCAGAGTTAT 58.199 38.462 7.51 0.00 43.53 1.89
1858 1884 6.552725 TCTCAGACTATCAGAGTTATTGGCAT 59.447 38.462 0.00 0.00 39.06 4.40
1880 1906 3.862267 TGTTTTGTGCTTTGGATTTGTCG 59.138 39.130 0.00 0.00 0.00 4.35
1914 1940 3.181423 TGTTCCCTGTTGGCTTCCTTAAT 60.181 43.478 0.00 0.00 0.00 1.40
2027 2054 2.796593 GGTTCTGCTTTGTCATTGCAAC 59.203 45.455 0.00 0.00 36.22 4.17
2029 2056 3.797451 TCTGCTTTGTCATTGCAACAA 57.203 38.095 0.00 0.00 36.22 2.83
2257 2284 2.625790 ACCTCTGCGATAGTCATCTTCC 59.374 50.000 0.00 0.00 39.35 3.46
2273 2300 3.732212 TCTTCCCATCATCATGTAAGCG 58.268 45.455 0.00 0.00 0.00 4.68
2444 2473 9.899226 AAATAGTGTTAAAAGTTCTCATGAAGC 57.101 29.630 0.00 0.00 32.15 3.86
2874 2907 5.106038 TGGAAGAAGCATTGCTAGATGTTTG 60.106 40.000 12.39 0.00 38.25 2.93
2877 2910 7.012704 GGAAGAAGCATTGCTAGATGTTTGATA 59.987 37.037 12.39 0.00 38.25 2.15
2880 2913 6.814506 AGCATTGCTAGATGTTTGATATCC 57.185 37.500 10.00 0.00 36.99 2.59
2896 2929 6.844696 TGATATCCGAGTTAACATTTCTGC 57.155 37.500 8.61 0.00 0.00 4.26
3202 3235 2.481185 CCAACATGCCTTGCAACATTTC 59.519 45.455 0.00 0.00 43.62 2.17
3203 3236 2.460757 ACATGCCTTGCAACATTTCC 57.539 45.000 0.00 0.00 43.62 3.13
3401 3438 0.707024 TCAGGCTCAGGAGAAGAGGA 59.293 55.000 0.00 0.00 33.72 3.71
3424 3461 3.119101 AGCCTGTCGTACTTGTATTCCTG 60.119 47.826 0.00 0.00 0.00 3.86
3477 3514 3.514309 GAGACTACAGCCCTGTTTCCTTA 59.486 47.826 6.21 0.00 41.83 2.69
3487 3524 4.216902 GCCCTGTTTCCTTAACGTGTATTT 59.783 41.667 0.00 0.00 39.72 1.40
3949 7751 7.761038 AAATTGAAGGTAAGTTTGTCCCTAG 57.239 36.000 0.00 0.00 0.00 3.02
3957 7759 6.154706 AGGTAAGTTTGTCCCTAGTCATGTAG 59.845 42.308 0.00 0.00 0.00 2.74
3960 7857 6.038997 AGTTTGTCCCTAGTCATGTAGTTC 57.961 41.667 0.00 0.00 0.00 3.01
3974 7871 6.924060 GTCATGTAGTTCACAACTGTTCTACT 59.076 38.462 13.90 7.71 42.84 2.57
3981 7878 8.336801 AGTTCACAACTGTTCTACTTTTCTTT 57.663 30.769 0.00 0.00 41.01 2.52
4027 7924 6.670464 TCCCTAATCATGTAACTGTTCTACCA 59.330 38.462 0.00 0.00 0.00 3.25
4145 8042 6.148976 GGAATTACAAGACCAAGTAAGGACAC 59.851 42.308 0.00 0.00 34.10 3.67
4147 8044 4.497291 ACAAGACCAAGTAAGGACACAA 57.503 40.909 0.00 0.00 0.00 3.33
4206 8103 8.528044 TCTGTAACCCACTGTCTTTAAAATTT 57.472 30.769 0.00 0.00 0.00 1.82
4409 8306 3.119291 ACAGCTAATCTTCGATTCAGCG 58.881 45.455 0.00 0.00 34.26 5.18
4441 8338 4.147653 GCATGCTTAATTGATCGATGCAAC 59.852 41.667 11.37 0.00 35.79 4.17
4457 8354 2.616376 TGCAACGTTCAACTGCTGTATT 59.384 40.909 10.27 0.00 37.00 1.89
4486 8383 6.348868 GCTAGATTTATTGTAGGGCTGAATGC 60.349 42.308 0.00 0.00 41.94 3.56
4487 8384 5.699143 AGATTTATTGTAGGGCTGAATGCT 58.301 37.500 0.00 0.00 42.39 3.79
4488 8385 6.131961 AGATTTATTGTAGGGCTGAATGCTT 58.868 36.000 0.00 0.00 42.39 3.91
4489 8386 5.835113 TTTATTGTAGGGCTGAATGCTTC 57.165 39.130 0.00 0.00 42.39 3.86
4490 8387 2.877097 TTGTAGGGCTGAATGCTTCA 57.123 45.000 0.00 0.00 42.39 3.02
4695 8598 5.680619 TCTGTATTTAAGTATGTGGGCCTG 58.319 41.667 4.53 0.00 0.00 4.85
4743 8646 2.678190 GCTATATGGTTCGGGAGATGCC 60.678 54.545 0.00 0.00 39.57 4.40
4890 8794 7.824289 TGATCTAGCTAACTTGTGTTGCTATTT 59.176 33.333 0.00 5.24 39.52 1.40
4929 8833 6.515035 ACTTTGGAGTTTATTGTGCTAAGCAC 60.515 38.462 0.00 0.00 45.97 4.40
4957 8861 6.618287 TTGATTTTCTGTGAACTCGAACAT 57.382 33.333 0.00 0.00 0.00 2.71
5007 8911 2.568062 TGGGCATGCTTTGTTCATTCAT 59.432 40.909 18.92 0.00 0.00 2.57
5040 8944 1.044725 GTTGTGCGCATTTGACTTCG 58.955 50.000 15.91 0.00 0.00 3.79
5050 8954 3.270027 CATTTGACTTCGGTGGCATCTA 58.730 45.455 0.00 0.00 0.00 1.98
5063 8967 4.816925 GGTGGCATCTATTTGGTTCTCTAC 59.183 45.833 0.00 0.00 0.00 2.59
5090 8994 2.937519 TGGTGGCATGTTACACTTTCA 58.062 42.857 14.07 4.77 37.72 2.69
5111 9015 4.100035 TCATACCTCTAGGCAGTTGACATG 59.900 45.833 0.00 0.00 39.32 3.21
5118 9022 3.715628 AGGCAGTTGACATGTGTTTTC 57.284 42.857 1.15 0.00 0.00 2.29
5147 9052 2.420687 GCCATAGTCTGCCTAAACTGCT 60.421 50.000 0.00 0.00 0.00 4.24
5234 9150 4.040936 ACCAAATGCACCCATGTAAGTA 57.959 40.909 0.00 0.00 0.00 2.24
5326 9242 9.136323 AGGTTTGGACTTGGATTATCATAATTC 57.864 33.333 0.00 0.00 0.00 2.17
5376 9292 7.607615 TTCTGAGTAGGGTTAAGTGTTAACT 57.392 36.000 7.22 0.00 43.82 2.24
5392 9308 8.040716 AGTGTTAACTAGTCAATACCATTTGC 57.959 34.615 7.22 0.00 33.79 3.68
5414 9330 4.828939 GCTTCATGGATTATCAATGGGTCA 59.171 41.667 9.48 0.00 0.00 4.02
5513 9429 4.349930 AGGTGGAGCAAAGTTCTAACCTTA 59.650 41.667 0.00 0.00 31.76 2.69
5719 9635 3.299050 TGTGGCCAACAGAACTACG 57.701 52.632 7.24 0.00 33.78 3.51
5876 9793 4.974645 TCTTTCACCGATTATATGCCCT 57.025 40.909 0.00 0.00 0.00 5.19
6285 10286 3.181445 ACATACCTTTTCTGCTGGACACA 60.181 43.478 0.00 0.00 0.00 3.72
6377 10378 6.805713 AGGGAAATGTAACTTTTCAGTTGTG 58.194 36.000 9.17 0.00 43.54 3.33
6381 10382 7.432252 GGAAATGTAACTTTTCAGTTGTGTGAG 59.568 37.037 9.17 0.00 43.54 3.51
6382 10383 5.229921 TGTAACTTTTCAGTTGTGTGAGC 57.770 39.130 0.00 0.00 43.54 4.26
6383 10384 4.697828 TGTAACTTTTCAGTTGTGTGAGCA 59.302 37.500 0.00 0.00 43.54 4.26
6384 10385 4.989279 AACTTTTCAGTTGTGTGAGCAT 57.011 36.364 0.00 0.00 42.05 3.79
6385 10386 4.558538 ACTTTTCAGTTGTGTGAGCATC 57.441 40.909 0.00 0.00 0.00 3.91
6386 10387 3.316308 ACTTTTCAGTTGTGTGAGCATCC 59.684 43.478 0.00 0.00 0.00 3.51
6387 10388 2.636647 TTCAGTTGTGTGAGCATCCA 57.363 45.000 0.00 0.00 0.00 3.41
6388 10389 2.865119 TCAGTTGTGTGAGCATCCAT 57.135 45.000 0.00 0.00 0.00 3.41
6389 10390 3.144657 TCAGTTGTGTGAGCATCCATT 57.855 42.857 0.00 0.00 0.00 3.16
6390 10391 2.815503 TCAGTTGTGTGAGCATCCATTG 59.184 45.455 0.00 0.00 0.00 2.82
6391 10392 2.555325 CAGTTGTGTGAGCATCCATTGT 59.445 45.455 0.00 0.00 0.00 2.71
6392 10393 3.752747 CAGTTGTGTGAGCATCCATTGTA 59.247 43.478 0.00 0.00 0.00 2.41
6393 10394 4.216042 CAGTTGTGTGAGCATCCATTGTAA 59.784 41.667 0.00 0.00 0.00 2.41
6394 10395 4.826733 AGTTGTGTGAGCATCCATTGTAAA 59.173 37.500 0.00 0.00 0.00 2.01
6395 10396 5.477984 AGTTGTGTGAGCATCCATTGTAAAT 59.522 36.000 0.00 0.00 0.00 1.40
6396 10397 6.658816 AGTTGTGTGAGCATCCATTGTAAATA 59.341 34.615 0.00 0.00 0.00 1.40
6397 10398 7.176515 AGTTGTGTGAGCATCCATTGTAAATAA 59.823 33.333 0.00 0.00 0.00 1.40
6398 10399 7.643569 TGTGTGAGCATCCATTGTAAATAAT 57.356 32.000 0.00 0.00 0.00 1.28
6399 10400 7.482474 TGTGTGAGCATCCATTGTAAATAATG 58.518 34.615 0.00 0.00 37.70 1.90
6400 10401 7.338957 TGTGTGAGCATCCATTGTAAATAATGA 59.661 33.333 1.44 0.00 39.79 2.57
6401 10402 8.355169 GTGTGAGCATCCATTGTAAATAATGAT 58.645 33.333 1.44 0.00 39.79 2.45
6402 10403 8.570488 TGTGAGCATCCATTGTAAATAATGATC 58.430 33.333 1.44 0.00 39.79 2.92
6403 10404 8.025445 GTGAGCATCCATTGTAAATAATGATCC 58.975 37.037 1.44 0.00 39.79 3.36
6404 10405 7.724951 TGAGCATCCATTGTAAATAATGATCCA 59.275 33.333 1.44 0.00 39.79 3.41
6405 10406 8.660295 AGCATCCATTGTAAATAATGATCCAT 57.340 30.769 1.44 0.00 39.79 3.41
6406 10407 9.096823 AGCATCCATTGTAAATAATGATCCATT 57.903 29.630 1.44 0.00 39.79 3.16
6410 10411 9.812347 TCCATTGTAAATAATGATCCATTAGCT 57.188 29.630 0.00 0.00 39.28 3.32
6411 10412 9.850628 CCATTGTAAATAATGATCCATTAGCTG 57.149 33.333 0.00 0.00 39.28 4.24
6412 10413 9.850628 CATTGTAAATAATGATCCATTAGCTGG 57.149 33.333 0.00 0.00 41.83 4.85
6426 10427 6.446781 CATTAGCTGGAAATCAATGTCTGT 57.553 37.500 0.00 0.00 0.00 3.41
6427 10428 6.860080 CATTAGCTGGAAATCAATGTCTGTT 58.140 36.000 0.00 0.00 0.00 3.16
6428 10429 4.778534 AGCTGGAAATCAATGTCTGTTG 57.221 40.909 0.00 0.00 0.00 3.33
6429 10430 4.401022 AGCTGGAAATCAATGTCTGTTGA 58.599 39.130 0.00 0.00 41.88 3.18
6437 10438 5.909621 ATCAATGTCTGTTGATTCCCTTG 57.090 39.130 0.00 0.00 44.23 3.61
6438 10439 4.984295 TCAATGTCTGTTGATTCCCTTGA 58.016 39.130 0.00 0.00 33.41 3.02
6439 10440 4.761739 TCAATGTCTGTTGATTCCCTTGAC 59.238 41.667 0.00 0.00 33.41 3.18
6440 10441 3.140325 TGTCTGTTGATTCCCTTGACC 57.860 47.619 0.00 0.00 0.00 4.02
6441 10442 2.441375 TGTCTGTTGATTCCCTTGACCA 59.559 45.455 0.00 0.00 0.00 4.02
6442 10443 2.814336 GTCTGTTGATTCCCTTGACCAC 59.186 50.000 0.00 0.00 0.00 4.16
6443 10444 2.711009 TCTGTTGATTCCCTTGACCACT 59.289 45.455 0.00 0.00 0.00 4.00
6444 10445 3.138283 TCTGTTGATTCCCTTGACCACTT 59.862 43.478 0.00 0.00 0.00 3.16
6445 10446 3.221771 TGTTGATTCCCTTGACCACTTG 58.778 45.455 0.00 0.00 0.00 3.16
6446 10447 3.222603 GTTGATTCCCTTGACCACTTGT 58.777 45.455 0.00 0.00 0.00 3.16
6447 10448 4.141367 TGTTGATTCCCTTGACCACTTGTA 60.141 41.667 0.00 0.00 0.00 2.41
6448 10449 4.715534 TGATTCCCTTGACCACTTGTAA 57.284 40.909 0.00 0.00 0.00 2.41
6449 10450 4.394729 TGATTCCCTTGACCACTTGTAAC 58.605 43.478 0.00 0.00 0.00 2.50
6450 10451 4.104102 TGATTCCCTTGACCACTTGTAACT 59.896 41.667 0.00 0.00 0.00 2.24
6451 10452 4.513406 TTCCCTTGACCACTTGTAACTT 57.487 40.909 0.00 0.00 0.00 2.66
6452 10453 4.513406 TCCCTTGACCACTTGTAACTTT 57.487 40.909 0.00 0.00 0.00 2.66
6453 10454 4.862371 TCCCTTGACCACTTGTAACTTTT 58.138 39.130 0.00 0.00 0.00 2.27
6454 10455 4.885325 TCCCTTGACCACTTGTAACTTTTC 59.115 41.667 0.00 0.00 0.00 2.29
6455 10456 4.642885 CCCTTGACCACTTGTAACTTTTCA 59.357 41.667 0.00 0.00 0.00 2.69
6456 10457 5.221048 CCCTTGACCACTTGTAACTTTTCAG 60.221 44.000 0.00 0.00 0.00 3.02
6457 10458 5.357032 CCTTGACCACTTGTAACTTTTCAGT 59.643 40.000 0.00 0.00 33.11 3.41
6458 10459 6.127730 CCTTGACCACTTGTAACTTTTCAGTT 60.128 38.462 0.00 0.00 45.73 3.16
6459 10460 6.189677 TGACCACTTGTAACTTTTCAGTTG 57.810 37.500 0.00 0.00 43.54 3.16
6460 10461 5.708230 TGACCACTTGTAACTTTTCAGTTGT 59.292 36.000 0.00 0.00 43.54 3.32
6461 10462 6.879993 TGACCACTTGTAACTTTTCAGTTGTA 59.120 34.615 0.00 0.00 43.54 2.41
6462 10463 7.554835 TGACCACTTGTAACTTTTCAGTTGTAT 59.445 33.333 0.00 0.00 43.54 2.29
6463 10464 7.703328 ACCACTTGTAACTTTTCAGTTGTATG 58.297 34.615 0.00 0.00 43.54 2.39
6464 10465 7.554835 ACCACTTGTAACTTTTCAGTTGTATGA 59.445 33.333 0.00 0.00 43.54 2.15
6474 10475 8.464404 ACTTTTCAGTTGTATGATCATCCATTG 58.536 33.333 12.53 8.91 0.00 2.82
6605 10608 4.033817 GTCTCTTTGATTCGCAGGATTCTG 59.966 45.833 0.00 0.00 43.64 3.02
6830 10833 9.872757 GACAAGTGACATAGAAAAATTCGTTAA 57.127 29.630 0.00 0.00 34.02 2.01
6870 10873 4.737855 TGAGTAGGCCTTAGCTTGTTAG 57.262 45.455 12.58 0.00 39.73 2.34
6873 10876 5.012768 TGAGTAGGCCTTAGCTTGTTAGTTT 59.987 40.000 12.58 0.00 39.73 2.66
6876 10879 5.707242 AGGCCTTAGCTTGTTAGTTTTTC 57.293 39.130 0.00 0.00 39.73 2.29
6878 10881 5.241728 AGGCCTTAGCTTGTTAGTTTTTCTG 59.758 40.000 0.00 0.00 39.73 3.02
6879 10882 5.240844 GGCCTTAGCTTGTTAGTTTTTCTGA 59.759 40.000 0.00 0.00 39.73 3.27
6880 10883 6.071896 GGCCTTAGCTTGTTAGTTTTTCTGAT 60.072 38.462 0.00 0.00 39.73 2.90
6881 10884 7.120726 GGCCTTAGCTTGTTAGTTTTTCTGATA 59.879 37.037 0.00 0.00 39.73 2.15
6882 10885 8.678199 GCCTTAGCTTGTTAGTTTTTCTGATAT 58.322 33.333 0.00 0.00 35.50 1.63
6958 10966 4.269183 CCACATCCACTACTTTATTGGCA 58.731 43.478 0.00 0.00 0.00 4.92
6972 10980 7.099120 ACTTTATTGGCAATGGAAATCTTGTC 58.901 34.615 22.57 0.00 0.00 3.18
7012 11020 8.685838 TTATGCAGAATCATTTGAGATCATGA 57.314 30.769 0.00 0.00 33.92 3.07
7013 11021 7.582667 ATGCAGAATCATTTGAGATCATGAA 57.417 32.000 0.00 0.00 33.13 2.57
7014 11022 7.399245 TGCAGAATCATTTGAGATCATGAAA 57.601 32.000 0.00 0.00 33.13 2.69
7016 11024 8.135529 TGCAGAATCATTTGAGATCATGAAATC 58.864 33.333 0.00 1.16 33.13 2.17
7021 11029 9.803315 AATCATTTGAGATCATGAAATCTTGTG 57.197 29.630 0.00 2.23 36.13 3.33
7030 11055 4.766891 TCATGAAATCTTGTGAACCCTTCC 59.233 41.667 0.00 0.00 0.00 3.46
7031 11056 4.177537 TGAAATCTTGTGAACCCTTCCA 57.822 40.909 0.00 0.00 0.00 3.53
7309 11334 4.455877 AGCATGAACACTAGGCACTAAAAC 59.544 41.667 0.00 0.00 42.17 2.43
7310 11335 4.215399 GCATGAACACTAGGCACTAAAACA 59.785 41.667 0.00 0.00 42.17 2.83
7557 11582 6.092748 GGTCCAATGTAACTGTAGCATTTTG 58.907 40.000 6.92 3.58 31.31 2.44
7712 11823 7.035004 GGTGTGTTATATGTTGTAGTTCCGTA 58.965 38.462 0.00 0.00 0.00 4.02
7781 11909 9.581099 AAAATTTGACGATGTTAGAAGTGTTTT 57.419 25.926 0.00 0.00 0.00 2.43
7785 11913 9.658475 TTTGACGATGTTAGAAGTGTTTTTATG 57.342 29.630 0.00 0.00 0.00 1.90
7786 11914 7.295201 TGACGATGTTAGAAGTGTTTTTATGC 58.705 34.615 0.00 0.00 0.00 3.14
7794 11922 6.759497 AGAAGTGTTTTTATGCCCATAGTC 57.241 37.500 0.00 0.00 0.00 2.59
7796 11924 7.630082 AGAAGTGTTTTTATGCCCATAGTCTA 58.370 34.615 0.00 0.00 0.00 2.59
7797 11925 8.107095 AGAAGTGTTTTTATGCCCATAGTCTAA 58.893 33.333 0.00 0.00 0.00 2.10
7853 11983 4.499399 CGATCGATTCAGAGTCGCTTTTAA 59.501 41.667 10.26 0.00 38.88 1.52
7898 12028 6.668645 AGAACTATAGAGAGATGAGTGGTGT 58.331 40.000 6.78 0.00 0.00 4.16
7925 12055 2.230508 GAGATCTTGTCACACGGTGGTA 59.769 50.000 13.48 0.00 33.87 3.25
7926 12056 2.029290 AGATCTTGTCACACGGTGGTAC 60.029 50.000 13.48 10.24 33.87 3.34
7997 12127 9.566530 CTTGTAGATATATTGATGAACGAGAGG 57.433 37.037 0.00 0.00 0.00 3.69
8008 12138 7.348080 TGATGAACGAGAGGATACAAAGTAT 57.652 36.000 0.00 0.00 41.41 2.12
8009 12139 8.459911 TGATGAACGAGAGGATACAAAGTATA 57.540 34.615 0.00 0.00 41.41 1.47
8010 12140 9.078990 TGATGAACGAGAGGATACAAAGTATAT 57.921 33.333 0.00 0.00 41.41 0.86
8053 12293 3.362237 GTCTCGTGAATGAACTTGAGTCG 59.638 47.826 0.00 0.00 0.00 4.18
8058 12298 6.330278 TCGTGAATGAACTTGAGTCGATAAT 58.670 36.000 0.00 0.00 0.00 1.28
8059 12299 6.472486 TCGTGAATGAACTTGAGTCGATAATC 59.528 38.462 0.00 0.00 0.00 1.75
8060 12300 6.253512 CGTGAATGAACTTGAGTCGATAATCA 59.746 38.462 0.00 0.00 0.00 2.57
8063 12303 5.011090 TGAACTTGAGTCGATAATCAGGG 57.989 43.478 10.58 5.90 0.00 4.45
8067 12307 4.339814 ACTTGAGTCGATAATCAGGGTCTC 59.660 45.833 10.58 0.37 0.00 3.36
8072 12312 2.959030 TCGATAATCAGGGTCTCTGGTG 59.041 50.000 0.00 0.00 43.53 4.17
8098 12338 2.348998 CTTTGGAGCCCGAGCACT 59.651 61.111 0.00 0.00 43.56 4.40
8150 12390 3.944015 GTCATAACTGCAGAAGCTCCAAT 59.056 43.478 23.35 0.00 42.74 3.16
8153 12393 5.761726 TCATAACTGCAGAAGCTCCAATATG 59.238 40.000 23.35 12.86 42.74 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.916697 GAAGCTGGTCGGCAAAGAGC 61.917 60.000 4.49 0.00 44.65 4.09
63 64 7.513371 TTTGTACCTTGGTAAATTGTCGAAT 57.487 32.000 0.53 0.00 0.00 3.34
75 76 3.763057 GGAGTCCATTTTGTACCTTGGT 58.237 45.455 3.60 0.00 0.00 3.67
147 149 1.824230 GATCTCCTCCTCATCATCGGG 59.176 57.143 0.00 0.00 0.00 5.14
226 231 4.097361 GAAGGTGCCCCGGGTCTC 62.097 72.222 21.85 7.56 35.12 3.36
433 440 8.051535 TCTGATAAGATGAGAAGCCAATCTTTT 58.948 33.333 2.76 0.00 34.56 2.27
482 489 1.885871 GGGTACTCCGTACGCAAGT 59.114 57.895 20.59 20.59 46.49 3.16
521 528 6.963083 AAATTAGACTAGCTCATACGGACT 57.037 37.500 0.00 0.00 0.00 3.85
569 576 9.317936 TGCATTATTTCACAAACAAACATGTAA 57.682 25.926 0.00 0.00 0.00 2.41
570 577 8.877808 TGCATTATTTCACAAACAAACATGTA 57.122 26.923 0.00 0.00 0.00 2.29
571 578 7.783090 TGCATTATTTCACAAACAAACATGT 57.217 28.000 0.00 0.00 0.00 3.21
572 579 9.499585 TTTTGCATTATTTCACAAACAAACATG 57.500 25.926 0.00 0.00 32.12 3.21
581 588 9.526713 ACGCATATATTTTGCATTATTTCACAA 57.473 25.926 10.01 0.00 40.14 3.33
599 606 9.376171 CGCTGTTTTTCAATAAATACGCATATA 57.624 29.630 0.00 0.00 32.00 0.86
600 607 7.378461 CCGCTGTTTTTCAATAAATACGCATAT 59.622 33.333 0.00 0.00 32.00 1.78
601 608 6.689241 CCGCTGTTTTTCAATAAATACGCATA 59.311 34.615 0.00 0.00 32.00 3.14
602 609 5.514914 CCGCTGTTTTTCAATAAATACGCAT 59.485 36.000 0.00 0.00 32.00 4.73
603 610 4.854291 CCGCTGTTTTTCAATAAATACGCA 59.146 37.500 0.00 0.00 32.00 5.24
604 611 4.259253 GCCGCTGTTTTTCAATAAATACGC 60.259 41.667 0.00 0.00 31.44 4.42
605 612 5.092781 AGCCGCTGTTTTTCAATAAATACG 58.907 37.500 0.00 0.00 31.44 3.06
606 613 6.196538 GCTAGCCGCTGTTTTTCAATAAATAC 59.803 38.462 2.29 0.00 35.14 1.89
607 614 6.262601 GCTAGCCGCTGTTTTTCAATAAATA 58.737 36.000 2.29 0.00 35.14 1.40
608 615 5.102313 GCTAGCCGCTGTTTTTCAATAAAT 58.898 37.500 2.29 0.00 35.14 1.40
609 616 4.481463 GCTAGCCGCTGTTTTTCAATAAA 58.519 39.130 2.29 0.00 35.14 1.40
610 617 4.091453 GCTAGCCGCTGTTTTTCAATAA 57.909 40.909 2.29 0.00 35.14 1.40
611 618 3.757745 GCTAGCCGCTGTTTTTCAATA 57.242 42.857 2.29 0.00 35.14 1.90
612 619 2.636768 GCTAGCCGCTGTTTTTCAAT 57.363 45.000 2.29 0.00 35.14 2.57
626 633 2.515996 TTACCGTGTGGCCAGCTAGC 62.516 60.000 5.11 6.62 39.70 3.42
627 634 0.036765 TTTACCGTGTGGCCAGCTAG 60.037 55.000 5.11 0.00 39.70 3.42
628 635 0.616371 ATTTACCGTGTGGCCAGCTA 59.384 50.000 5.11 0.00 39.70 3.32
629 636 0.616371 TATTTACCGTGTGGCCAGCT 59.384 50.000 5.11 0.00 39.70 4.24
630 637 1.333619 CATATTTACCGTGTGGCCAGC 59.666 52.381 5.11 0.24 39.70 4.85
631 638 1.946768 CCATATTTACCGTGTGGCCAG 59.053 52.381 5.11 0.00 39.70 4.85
632 639 1.408961 CCCATATTTACCGTGTGGCCA 60.409 52.381 0.00 0.00 39.70 5.36
633 640 1.314730 CCCATATTTACCGTGTGGCC 58.685 55.000 0.00 0.00 39.70 5.36
634 641 1.944709 GACCCATATTTACCGTGTGGC 59.055 52.381 0.00 0.00 39.70 5.01
635 642 3.202906 CTGACCCATATTTACCGTGTGG 58.797 50.000 0.00 0.00 42.84 4.17
636 643 2.612212 GCTGACCCATATTTACCGTGTG 59.388 50.000 0.00 0.00 0.00 3.82
637 644 2.740580 CGCTGACCCATATTTACCGTGT 60.741 50.000 0.00 0.00 0.00 4.49
638 645 1.864711 CGCTGACCCATATTTACCGTG 59.135 52.381 0.00 0.00 0.00 4.94
639 646 1.808891 GCGCTGACCCATATTTACCGT 60.809 52.381 0.00 0.00 0.00 4.83
640 647 0.865769 GCGCTGACCCATATTTACCG 59.134 55.000 0.00 0.00 0.00 4.02
641 648 0.865769 CGCGCTGACCCATATTTACC 59.134 55.000 5.56 0.00 0.00 2.85
642 649 1.578583 ACGCGCTGACCCATATTTAC 58.421 50.000 5.73 0.00 0.00 2.01
643 650 1.937223 CAACGCGCTGACCCATATTTA 59.063 47.619 5.73 0.00 0.00 1.40
644 651 0.732571 CAACGCGCTGACCCATATTT 59.267 50.000 5.73 0.00 0.00 1.40
645 652 1.095228 CCAACGCGCTGACCCATATT 61.095 55.000 11.83 0.00 0.00 1.28
646 653 1.523711 CCAACGCGCTGACCCATAT 60.524 57.895 11.83 0.00 0.00 1.78
647 654 2.125310 CCAACGCGCTGACCCATA 60.125 61.111 11.83 0.00 0.00 2.74
651 658 4.980805 TCACCCAACGCGCTGACC 62.981 66.667 11.83 0.00 0.00 4.02
652 659 1.852067 ATTTCACCCAACGCGCTGAC 61.852 55.000 11.83 0.00 0.00 3.51
653 660 1.599518 ATTTCACCCAACGCGCTGA 60.600 52.632 11.83 0.00 0.00 4.26
654 661 1.442520 CATTTCACCCAACGCGCTG 60.443 57.895 5.73 3.47 0.00 5.18
655 662 2.953821 CATTTCACCCAACGCGCT 59.046 55.556 5.73 0.00 0.00 5.92
656 663 2.804931 GCATTTCACCCAACGCGC 60.805 61.111 5.73 0.00 0.00 6.86
657 664 2.126502 GGCATTTCACCCAACGCG 60.127 61.111 3.53 3.53 0.00 6.01
658 665 2.126502 CGGCATTTCACCCAACGC 60.127 61.111 0.00 0.00 0.00 4.84
659 666 1.209127 GTCGGCATTTCACCCAACG 59.791 57.895 0.00 0.00 0.00 4.10
660 667 0.893727 AGGTCGGCATTTCACCCAAC 60.894 55.000 0.00 0.00 0.00 3.77
661 668 0.693622 TAGGTCGGCATTTCACCCAA 59.306 50.000 0.00 0.00 0.00 4.12
662 669 0.693622 TTAGGTCGGCATTTCACCCA 59.306 50.000 0.00 0.00 0.00 4.51
663 670 1.828979 TTTAGGTCGGCATTTCACCC 58.171 50.000 0.00 0.00 0.00 4.61
664 671 3.013921 TCATTTAGGTCGGCATTTCACC 58.986 45.455 0.00 0.00 0.00 4.02
665 672 4.900635 ATCATTTAGGTCGGCATTTCAC 57.099 40.909 0.00 0.00 0.00 3.18
666 673 6.375736 TGTTTATCATTTAGGTCGGCATTTCA 59.624 34.615 0.00 0.00 0.00 2.69
667 674 6.791303 TGTTTATCATTTAGGTCGGCATTTC 58.209 36.000 0.00 0.00 0.00 2.17
668 675 6.767524 TGTTTATCATTTAGGTCGGCATTT 57.232 33.333 0.00 0.00 0.00 2.32
669 676 6.767524 TTGTTTATCATTTAGGTCGGCATT 57.232 33.333 0.00 0.00 0.00 3.56
670 677 6.735694 GCATTGTTTATCATTTAGGTCGGCAT 60.736 38.462 0.00 0.00 0.00 4.40
671 678 5.449862 GCATTGTTTATCATTTAGGTCGGCA 60.450 40.000 0.00 0.00 0.00 5.69
672 679 4.976116 GCATTGTTTATCATTTAGGTCGGC 59.024 41.667 0.00 0.00 0.00 5.54
673 680 5.204833 CGCATTGTTTATCATTTAGGTCGG 58.795 41.667 0.00 0.00 0.00 4.79
674 681 5.007234 TCCGCATTGTTTATCATTTAGGTCG 59.993 40.000 0.00 0.00 0.00 4.79
675 682 6.371809 TCCGCATTGTTTATCATTTAGGTC 57.628 37.500 0.00 0.00 0.00 3.85
676 683 6.735694 GCATCCGCATTGTTTATCATTTAGGT 60.736 38.462 0.00 0.00 38.36 3.08
677 684 5.630680 GCATCCGCATTGTTTATCATTTAGG 59.369 40.000 0.00 0.00 38.36 2.69
678 685 5.630680 GGCATCCGCATTGTTTATCATTTAG 59.369 40.000 0.00 0.00 41.24 1.85
679 686 5.527951 GGCATCCGCATTGTTTATCATTTA 58.472 37.500 0.00 0.00 41.24 1.40
680 687 4.370917 GGCATCCGCATTGTTTATCATTT 58.629 39.130 0.00 0.00 41.24 2.32
681 688 3.550639 CGGCATCCGCATTGTTTATCATT 60.551 43.478 0.00 0.00 41.17 2.57
682 689 2.030893 CGGCATCCGCATTGTTTATCAT 60.031 45.455 0.00 0.00 41.17 2.45
683 690 1.333308 CGGCATCCGCATTGTTTATCA 59.667 47.619 0.00 0.00 41.17 2.15
684 691 2.036556 CGGCATCCGCATTGTTTATC 57.963 50.000 0.00 0.00 41.17 1.75
707 714 2.046700 TGTTTGGATCGGTCGCCC 60.047 61.111 0.00 0.00 0.00 6.13
708 715 1.079405 TCTGTTTGGATCGGTCGCC 60.079 57.895 0.00 0.00 0.00 5.54
709 716 0.669318 TGTCTGTTTGGATCGGTCGC 60.669 55.000 0.00 0.00 0.00 5.19
710 717 1.790755 TTGTCTGTTTGGATCGGTCG 58.209 50.000 0.00 0.00 0.00 4.79
711 718 4.561735 TTTTTGTCTGTTTGGATCGGTC 57.438 40.909 0.00 0.00 0.00 4.79
729 736 6.324042 ACGAACGGTGTTTTTGTCTATTTTT 58.676 32.000 0.00 0.00 0.00 1.94
730 737 5.882553 ACGAACGGTGTTTTTGTCTATTTT 58.117 33.333 0.00 0.00 0.00 1.82
731 738 5.488645 ACGAACGGTGTTTTTGTCTATTT 57.511 34.783 0.00 0.00 0.00 1.40
732 739 5.488645 AACGAACGGTGTTTTTGTCTATT 57.511 34.783 0.00 0.00 0.00 1.73
733 740 5.267776 CAAACGAACGGTGTTTTTGTCTAT 58.732 37.500 0.00 0.00 37.44 1.98
734 741 4.437121 CCAAACGAACGGTGTTTTTGTCTA 60.437 41.667 0.00 0.00 37.44 2.59
735 742 3.494232 CAAACGAACGGTGTTTTTGTCT 58.506 40.909 0.00 0.00 37.44 3.41
736 743 2.595095 CCAAACGAACGGTGTTTTTGTC 59.405 45.455 0.00 0.00 37.44 3.18
737 744 2.597520 CCAAACGAACGGTGTTTTTGT 58.402 42.857 0.00 0.00 37.44 2.83
738 745 1.921230 CCCAAACGAACGGTGTTTTTG 59.079 47.619 0.00 0.56 37.44 2.44
739 746 1.545136 ACCCAAACGAACGGTGTTTTT 59.455 42.857 0.00 0.00 37.44 1.94
740 747 1.132834 GACCCAAACGAACGGTGTTTT 59.867 47.619 0.00 0.00 37.44 2.43
741 748 0.734309 GACCCAAACGAACGGTGTTT 59.266 50.000 0.00 0.00 40.01 2.83
742 749 1.430707 CGACCCAAACGAACGGTGTT 61.431 55.000 0.00 0.00 0.00 3.32
743 750 1.884004 CGACCCAAACGAACGGTGT 60.884 57.895 0.00 0.00 0.00 4.16
744 751 1.592131 TCGACCCAAACGAACGGTG 60.592 57.895 0.00 0.00 36.84 4.94
745 752 1.592400 GTCGACCCAAACGAACGGT 60.592 57.895 3.51 0.00 41.31 4.83
746 753 2.651137 CGTCGACCCAAACGAACGG 61.651 63.158 10.58 0.00 41.29 4.44
747 754 1.945662 ACGTCGACCCAAACGAACG 60.946 57.895 10.58 0.00 41.29 3.95
748 755 1.147557 ACACGTCGACCCAAACGAAC 61.148 55.000 10.58 0.00 41.29 3.95
749 756 0.459934 AACACGTCGACCCAAACGAA 60.460 50.000 10.58 0.00 41.29 3.85
750 757 1.141449 AACACGTCGACCCAAACGA 59.859 52.632 10.58 0.00 41.29 3.85
751 758 1.274476 CAACACGTCGACCCAAACG 59.726 57.895 10.58 0.00 44.22 3.60
752 759 0.810823 TCCAACACGTCGACCCAAAC 60.811 55.000 10.58 0.00 0.00 2.93
753 760 0.531090 CTCCAACACGTCGACCCAAA 60.531 55.000 10.58 0.00 0.00 3.28
754 761 1.068417 CTCCAACACGTCGACCCAA 59.932 57.895 10.58 0.00 0.00 4.12
755 762 1.678598 AACTCCAACACGTCGACCCA 61.679 55.000 10.58 0.00 0.00 4.51
756 763 1.068585 AACTCCAACACGTCGACCC 59.931 57.895 10.58 0.00 0.00 4.46
757 764 0.529119 ACAACTCCAACACGTCGACC 60.529 55.000 10.58 0.00 0.00 4.79
758 765 1.257155 GAACAACTCCAACACGTCGAC 59.743 52.381 5.18 5.18 0.00 4.20
759 766 1.135527 AGAACAACTCCAACACGTCGA 59.864 47.619 0.00 0.00 0.00 4.20
760 767 1.567504 AGAACAACTCCAACACGTCG 58.432 50.000 0.00 0.00 0.00 5.12
761 768 4.510340 ACATTAGAACAACTCCAACACGTC 59.490 41.667 0.00 0.00 0.00 4.34
762 769 4.448210 ACATTAGAACAACTCCAACACGT 58.552 39.130 0.00 0.00 0.00 4.49
763 770 5.418310 AACATTAGAACAACTCCAACACG 57.582 39.130 0.00 0.00 0.00 4.49
764 771 8.149973 TCTAAACATTAGAACAACTCCAACAC 57.850 34.615 0.00 0.00 0.00 3.32
765 772 8.208224 TCTCTAAACATTAGAACAACTCCAACA 58.792 33.333 1.87 0.00 0.00 3.33
766 773 8.603242 TCTCTAAACATTAGAACAACTCCAAC 57.397 34.615 1.87 0.00 0.00 3.77
767 774 9.793259 ATTCTCTAAACATTAGAACAACTCCAA 57.207 29.630 1.87 0.00 32.38 3.53
768 775 9.219603 CATTCTCTAAACATTAGAACAACTCCA 57.780 33.333 1.87 0.00 32.38 3.86
769 776 9.220767 ACATTCTCTAAACATTAGAACAACTCC 57.779 33.333 1.87 0.00 32.38 3.85
771 778 9.778741 TCACATTCTCTAAACATTAGAACAACT 57.221 29.630 1.87 0.00 32.38 3.16
772 779 9.813080 GTCACATTCTCTAAACATTAGAACAAC 57.187 33.333 1.87 0.00 32.38 3.32
773 780 8.708742 CGTCACATTCTCTAAACATTAGAACAA 58.291 33.333 1.87 0.00 32.38 2.83
774 781 7.330946 CCGTCACATTCTCTAAACATTAGAACA 59.669 37.037 1.87 0.00 32.38 3.18
775 782 7.331193 ACCGTCACATTCTCTAAACATTAGAAC 59.669 37.037 1.87 0.00 32.38 3.01
776 783 7.383687 ACCGTCACATTCTCTAAACATTAGAA 58.616 34.615 1.87 0.00 34.00 2.10
777 784 6.931838 ACCGTCACATTCTCTAAACATTAGA 58.068 36.000 0.37 0.37 0.00 2.10
778 785 7.596749 AACCGTCACATTCTCTAAACATTAG 57.403 36.000 0.00 0.00 0.00 1.73
779 786 7.972832 AAACCGTCACATTCTCTAAACATTA 57.027 32.000 0.00 0.00 0.00 1.90
780 787 6.877611 AAACCGTCACATTCTCTAAACATT 57.122 33.333 0.00 0.00 0.00 2.71
781 788 6.293955 CCAAAACCGTCACATTCTCTAAACAT 60.294 38.462 0.00 0.00 0.00 2.71
782 789 5.008217 CCAAAACCGTCACATTCTCTAAACA 59.992 40.000 0.00 0.00 0.00 2.83
783 790 5.008316 ACCAAAACCGTCACATTCTCTAAAC 59.992 40.000 0.00 0.00 0.00 2.01
784 791 5.127491 ACCAAAACCGTCACATTCTCTAAA 58.873 37.500 0.00 0.00 0.00 1.85
785 792 4.710324 ACCAAAACCGTCACATTCTCTAA 58.290 39.130 0.00 0.00 0.00 2.10
786 793 4.345859 ACCAAAACCGTCACATTCTCTA 57.654 40.909 0.00 0.00 0.00 2.43
835 842 2.994186 TACAATTCTTCCGGGGCTAC 57.006 50.000 0.00 0.00 0.00 3.58
1264 1274 1.490490 AGAAGGTGGTGAGCAACTCAA 59.510 47.619 1.34 0.00 42.46 3.02
1310 1320 3.634504 TCTATACCGACCCAGTGCTAAA 58.365 45.455 0.00 0.00 0.00 1.85
1600 1610 5.709966 CACCAATAAAAGTTCTAGGGCAAC 58.290 41.667 0.00 0.00 0.00 4.17
1606 1616 6.236017 TGAACGCACCAATAAAAGTTCTAG 57.764 37.500 7.49 0.00 38.83 2.43
1619 1629 3.573598 CAAGCAAAATATGAACGCACCA 58.426 40.909 0.00 0.00 0.00 4.17
1624 1634 4.701956 AGTCCCAAGCAAAATATGAACG 57.298 40.909 0.00 0.00 0.00 3.95
1691 1701 6.824196 CACACTACTTATCTACTCCTGACAGA 59.176 42.308 3.32 0.00 0.00 3.41
1741 1752 1.791555 GCAACATTTCGATGGTCAGCG 60.792 52.381 1.93 1.93 42.20 5.18
1763 1789 5.466432 ACACATAGACGATATCGATACCG 57.534 43.478 30.75 17.69 43.02 4.02
1826 1852 5.674525 ACTCTGATAGTCTGAGACTCTGAG 58.325 45.833 24.21 24.21 42.76 3.35
1827 1853 5.692115 ACTCTGATAGTCTGAGACTCTGA 57.308 43.478 19.83 13.59 42.76 3.27
1828 1854 8.344831 CAATAACTCTGATAGTCTGAGACTCTG 58.655 40.741 19.83 10.05 42.76 3.35
1829 1855 7.502226 CCAATAACTCTGATAGTCTGAGACTCT 59.498 40.741 19.83 9.59 42.76 3.24
1830 1856 7.648142 CCAATAACTCTGATAGTCTGAGACTC 58.352 42.308 19.83 6.64 42.76 3.36
1831 1857 6.040391 GCCAATAACTCTGATAGTCTGAGACT 59.960 42.308 20.12 20.12 42.76 3.24
1832 1858 6.183360 TGCCAATAACTCTGATAGTCTGAGAC 60.183 42.308 17.22 3.98 42.76 3.36
1833 1859 5.893824 TGCCAATAACTCTGATAGTCTGAGA 59.106 40.000 17.22 0.84 42.76 3.27
1851 1877 2.879646 CCAAAGCACAAAACATGCCAAT 59.120 40.909 0.00 0.00 44.53 3.16
1852 1878 2.093288 TCCAAAGCACAAAACATGCCAA 60.093 40.909 0.00 0.00 44.53 4.52
1858 1884 3.862267 CGACAAATCCAAAGCACAAAACA 59.138 39.130 0.00 0.00 0.00 2.83
1880 1906 5.529060 CCAACAGGGAACAGCTTAGATTATC 59.471 44.000 0.00 0.00 40.01 1.75
2066 2093 8.669243 GCACAGCTACTTGTAGATTTTAAGATT 58.331 33.333 11.54 0.00 0.00 2.40
2257 2284 4.620982 TCAGTACGCTTACATGATGATGG 58.379 43.478 0.00 0.00 33.39 3.51
2273 2300 2.526304 TGCGCCCTATGAATCAGTAC 57.474 50.000 4.18 0.00 0.00 2.73
2444 2473 4.932146 ACTGAAAAGGACCAAATGAAACG 58.068 39.130 0.00 0.00 0.00 3.60
2593 2622 7.436970 GGTTACCTTTTTAAAAGTGTGGATGTG 59.563 37.037 15.19 0.96 0.00 3.21
2804 2837 7.728148 TCTGTTGTATCCTTTTACTGTGTACA 58.272 34.615 0.00 0.00 0.00 2.90
2874 2907 7.011482 ACAAGCAGAAATGTTAACTCGGATATC 59.989 37.037 7.22 0.00 0.00 1.63
2877 2910 5.003804 ACAAGCAGAAATGTTAACTCGGAT 58.996 37.500 7.22 0.00 0.00 4.18
2880 2913 5.597813 AGACAAGCAGAAATGTTAACTCG 57.402 39.130 7.22 0.00 0.00 4.18
3401 3438 3.514309 AGGAATACAAGTACGACAGGCTT 59.486 43.478 0.00 0.00 0.00 4.35
3424 3461 6.706270 TCTTGACAGAATCCAAAGAGTAACAC 59.294 38.462 0.00 0.00 0.00 3.32
3477 3514 8.614346 AGTTAACACACATTGTAAATACACGTT 58.386 29.630 8.61 0.00 37.51 3.99
3487 3524 6.443934 AGTTTGCAGTTAACACACATTGTA 57.556 33.333 8.61 0.00 37.51 2.41
3612 7414 4.079253 TGAAAAAGACAGGCCTTACATCC 58.921 43.478 0.00 0.00 0.00 3.51
3949 7751 6.924060 AGTAGAACAGTTGTGAACTACATGAC 59.076 38.462 0.00 0.00 40.46 3.06
3957 7759 8.850452 CAAAAGAAAAGTAGAACAGTTGTGAAC 58.150 33.333 0.00 0.00 0.00 3.18
3960 7857 7.312899 ACCAAAAGAAAAGTAGAACAGTTGTG 58.687 34.615 0.00 0.00 0.00 3.33
3974 7871 9.377312 CTTATGAAGGAAACAACCAAAAGAAAA 57.623 29.630 0.00 0.00 0.00 2.29
3981 7878 5.303333 GGGAACTTATGAAGGAAACAACCAA 59.697 40.000 0.00 0.00 0.00 3.67
4027 7924 8.017418 TGAACTTATGAAGGAAACAACCAAAT 57.983 30.769 0.00 0.00 0.00 2.32
4145 8042 2.977169 CGGTTCACGTAAAAATGCCTTG 59.023 45.455 0.00 0.00 37.93 3.61
4147 8044 2.496111 TCGGTTCACGTAAAAATGCCT 58.504 42.857 0.00 0.00 44.69 4.75
4188 8085 7.224557 CCTTGTCAAAATTTTAAAGACAGTGGG 59.775 37.037 20.97 18.25 39.97 4.61
4191 8088 9.366216 GTTCCTTGTCAAAATTTTAAAGACAGT 57.634 29.630 17.15 0.00 39.97 3.55
4193 8090 9.936759 AAGTTCCTTGTCAAAATTTTAAAGACA 57.063 25.926 15.03 15.03 37.43 3.41
4206 8103 5.888724 TGTATGAAACCAAGTTCCTTGTCAA 59.111 36.000 3.53 0.00 39.58 3.18
4409 8306 6.142798 CGATCAATTAAGCATGCACCATAAAC 59.857 38.462 21.98 3.34 0.00 2.01
4441 8338 2.973224 GCACAAATACAGCAGTTGAACG 59.027 45.455 0.00 0.00 35.76 3.95
4457 8354 5.822519 CAGCCCTACAATAAATCTAGCACAA 59.177 40.000 0.00 0.00 0.00 3.33
4486 8383 7.959689 ACAGATATATGCTTGCTAAGTGAAG 57.040 36.000 0.00 0.00 0.00 3.02
4487 8384 8.737168 AAACAGATATATGCTTGCTAAGTGAA 57.263 30.769 0.00 0.00 0.00 3.18
4488 8385 8.737168 AAAACAGATATATGCTTGCTAAGTGA 57.263 30.769 0.00 0.00 0.00 3.41
4695 8598 5.160641 TCATTTCGCTCTACCAAATTTTGC 58.839 37.500 3.50 0.00 0.00 3.68
4929 8833 7.912949 TCGAGTTCACAGAAAATCAAATTTG 57.087 32.000 12.15 12.15 31.77 2.32
4932 8836 7.026631 TGTTCGAGTTCACAGAAAATCAAAT 57.973 32.000 0.00 0.00 0.00 2.32
4957 8861 3.312736 AAGGGGAAGCAGAAACTTTCA 57.687 42.857 4.34 0.00 0.00 2.69
5007 8911 3.000041 CGCACAACTTGAGGTAGCAATA 59.000 45.455 0.00 0.00 0.00 1.90
5040 8944 3.891049 AGAGAACCAAATAGATGCCACC 58.109 45.455 0.00 0.00 0.00 4.61
5090 8994 4.033709 ACATGTCAACTGCCTAGAGGTAT 58.966 43.478 0.00 0.00 37.57 2.73
5111 9015 5.241728 AGACTATGGCCAGAAAAGAAAACAC 59.758 40.000 13.05 0.00 0.00 3.32
5147 9052 9.562408 TCTTGTGTGGTAAAGAAATTGTATACA 57.438 29.630 0.08 0.08 29.59 2.29
5205 9110 1.412343 GGGTGCATTTGGTTGACAACT 59.588 47.619 17.52 0.00 39.19 3.16
5326 9242 0.538057 TCCTTTGCTGCAGGTTCCTG 60.538 55.000 17.12 13.88 37.15 3.86
5376 9292 6.422333 TCCATGAAGCAAATGGTATTGACTA 58.578 36.000 10.92 0.00 44.27 2.59
5392 9308 6.071560 CCATGACCCATTGATAATCCATGAAG 60.072 42.308 0.00 0.00 33.90 3.02
5414 9330 6.364701 TGCAAGAATTTACTATAGCACCCAT 58.635 36.000 0.00 0.00 0.00 4.00
5876 9793 4.219115 TGGAGTTGGGAAAGCATTTTGTA 58.781 39.130 0.00 0.00 39.27 2.41
6047 9964 7.225931 GTCAAGGAACACATTGTAGAGTTTGTA 59.774 37.037 0.00 0.00 0.00 2.41
6050 9967 6.119536 TGTCAAGGAACACATTGTAGAGTTT 58.880 36.000 0.00 0.00 0.00 2.66
6377 10378 8.025445 GGATCATTATTTACAATGGATGCTCAC 58.975 37.037 0.00 0.00 36.69 3.51
6384 10385 9.812347 AGCTAATGGATCATTATTTACAATGGA 57.188 29.630 0.00 0.00 36.03 3.41
6385 10386 9.850628 CAGCTAATGGATCATTATTTACAATGG 57.149 33.333 0.00 0.00 36.03 3.16
6403 10404 6.446781 ACAGACATTGATTTCCAGCTAATG 57.553 37.500 2.31 2.31 35.47 1.90
6404 10405 6.660521 TCAACAGACATTGATTTCCAGCTAAT 59.339 34.615 0.00 0.00 33.62 1.73
6405 10406 6.003326 TCAACAGACATTGATTTCCAGCTAA 58.997 36.000 0.00 0.00 33.62 3.09
6406 10407 5.559770 TCAACAGACATTGATTTCCAGCTA 58.440 37.500 0.00 0.00 33.62 3.32
6407 10408 4.401022 TCAACAGACATTGATTTCCAGCT 58.599 39.130 0.00 0.00 33.62 4.24
6408 10409 4.771590 TCAACAGACATTGATTTCCAGC 57.228 40.909 0.00 0.00 33.62 4.85
6416 10417 4.761739 GTCAAGGGAATCAACAGACATTGA 59.238 41.667 0.00 0.00 42.62 2.57
6417 10418 4.082571 GGTCAAGGGAATCAACAGACATTG 60.083 45.833 0.00 0.00 0.00 2.82
6418 10419 4.082125 GGTCAAGGGAATCAACAGACATT 58.918 43.478 0.00 0.00 0.00 2.71
6419 10420 3.074390 TGGTCAAGGGAATCAACAGACAT 59.926 43.478 0.00 0.00 0.00 3.06
6420 10421 2.441375 TGGTCAAGGGAATCAACAGACA 59.559 45.455 0.00 0.00 0.00 3.41
6421 10422 2.814336 GTGGTCAAGGGAATCAACAGAC 59.186 50.000 0.00 0.00 0.00 3.51
6422 10423 2.711009 AGTGGTCAAGGGAATCAACAGA 59.289 45.455 0.00 0.00 0.00 3.41
6423 10424 3.146104 AGTGGTCAAGGGAATCAACAG 57.854 47.619 0.00 0.00 0.00 3.16
6424 10425 3.221771 CAAGTGGTCAAGGGAATCAACA 58.778 45.455 0.00 0.00 0.00 3.33
6425 10426 3.222603 ACAAGTGGTCAAGGGAATCAAC 58.777 45.455 0.00 0.00 0.00 3.18
6426 10427 3.593442 ACAAGTGGTCAAGGGAATCAA 57.407 42.857 0.00 0.00 0.00 2.57
6427 10428 4.104102 AGTTACAAGTGGTCAAGGGAATCA 59.896 41.667 0.00 0.00 0.00 2.57
6428 10429 4.652822 AGTTACAAGTGGTCAAGGGAATC 58.347 43.478 0.00 0.00 0.00 2.52
6429 10430 4.724279 AGTTACAAGTGGTCAAGGGAAT 57.276 40.909 0.00 0.00 0.00 3.01
6430 10431 4.513406 AAGTTACAAGTGGTCAAGGGAA 57.487 40.909 0.00 0.00 0.00 3.97
6431 10432 4.513406 AAAGTTACAAGTGGTCAAGGGA 57.487 40.909 0.00 0.00 0.00 4.20
6432 10433 4.642885 TGAAAAGTTACAAGTGGTCAAGGG 59.357 41.667 0.00 0.00 0.00 3.95
6433 10434 5.357032 ACTGAAAAGTTACAAGTGGTCAAGG 59.643 40.000 0.00 0.00 0.00 3.61
6434 10435 6.436843 ACTGAAAAGTTACAAGTGGTCAAG 57.563 37.500 0.00 0.00 0.00 3.02
6435 10436 6.207810 ACAACTGAAAAGTTACAAGTGGTCAA 59.792 34.615 0.00 0.00 0.00 3.18
6436 10437 5.708230 ACAACTGAAAAGTTACAAGTGGTCA 59.292 36.000 0.00 0.00 0.00 4.02
6437 10438 6.190954 ACAACTGAAAAGTTACAAGTGGTC 57.809 37.500 0.00 0.00 0.00 4.02
6438 10439 7.554835 TCATACAACTGAAAAGTTACAAGTGGT 59.445 33.333 0.00 0.00 0.00 4.16
6439 10440 7.925993 TCATACAACTGAAAAGTTACAAGTGG 58.074 34.615 0.00 0.00 0.00 4.00
6440 10441 9.599322 GATCATACAACTGAAAAGTTACAAGTG 57.401 33.333 0.00 0.00 0.00 3.16
6441 10442 9.337396 TGATCATACAACTGAAAAGTTACAAGT 57.663 29.630 0.00 0.00 0.00 3.16
6444 10445 8.946085 GGATGATCATACAACTGAAAAGTTACA 58.054 33.333 13.39 0.00 0.00 2.41
6445 10446 8.946085 TGGATGATCATACAACTGAAAAGTTAC 58.054 33.333 18.65 0.00 0.00 2.50
6446 10447 9.685276 ATGGATGATCATACAACTGAAAAGTTA 57.315 29.630 24.30 0.00 34.87 2.24
6447 10448 8.585471 ATGGATGATCATACAACTGAAAAGTT 57.415 30.769 24.30 1.05 34.87 2.66
6448 10449 8.464404 CAATGGATGATCATACAACTGAAAAGT 58.536 33.333 24.30 1.81 34.87 2.66
6449 10450 8.464404 ACAATGGATGATCATACAACTGAAAAG 58.536 33.333 27.92 14.68 34.87 2.27
6450 10451 8.352137 ACAATGGATGATCATACAACTGAAAA 57.648 30.769 27.92 6.58 34.87 2.29
6451 10452 7.943079 ACAATGGATGATCATACAACTGAAA 57.057 32.000 27.92 7.21 34.87 2.69
6452 10453 9.460019 TTTACAATGGATGATCATACAACTGAA 57.540 29.630 27.92 17.30 34.87 3.02
6453 10454 9.631257 ATTTACAATGGATGATCATACAACTGA 57.369 29.630 27.92 13.45 34.87 3.41
6462 10463 9.810870 TGGATCATTATTTACAATGGATGATCA 57.189 29.630 22.73 0.00 45.76 2.92
6605 10608 5.401376 GTGTTTTTCCTATTCCTGCGTTTTC 59.599 40.000 0.00 0.00 0.00 2.29
6787 10790 7.704472 GTCACTTGTCTGATTAGTAGGATTGAG 59.296 40.741 0.00 0.00 0.00 3.02
6830 10833 9.844257 CCTACTCAAGAATTTTCATAGGAATCT 57.156 33.333 0.00 0.00 31.37 2.40
6846 10849 3.173965 ACAAGCTAAGGCCTACTCAAGA 58.826 45.455 5.16 0.00 39.73 3.02
6852 10855 6.430308 AGAAAAACTAACAAGCTAAGGCCTAC 59.570 38.462 5.16 0.00 39.73 3.18
6918 10926 1.702401 TGGGCTCACCATGTCAAGTAA 59.298 47.619 0.00 0.00 46.80 2.24
6958 10966 4.018597 AGAGCTGAGGACAAGATTTCCATT 60.019 41.667 0.00 0.00 35.33 3.16
6972 10980 5.791666 TCTGCATAATTCATAGAGCTGAGG 58.208 41.667 0.00 0.00 0.00 3.86
7012 11020 3.909732 TGTGGAAGGGTTCACAAGATTT 58.090 40.909 0.00 0.00 40.43 2.17
7013 11021 3.593442 TGTGGAAGGGTTCACAAGATT 57.407 42.857 0.00 0.00 40.43 2.40
7014 11022 3.593442 TTGTGGAAGGGTTCACAAGAT 57.407 42.857 4.98 0.00 45.40 2.40
7018 11026 0.626382 TGGTTGTGGAAGGGTTCACA 59.374 50.000 0.00 0.00 41.47 3.58
7019 11027 1.613437 CATGGTTGTGGAAGGGTTCAC 59.387 52.381 0.00 0.00 34.71 3.18
7020 11028 1.216678 ACATGGTTGTGGAAGGGTTCA 59.783 47.619 0.00 0.00 33.85 3.18
7021 11029 1.886542 GACATGGTTGTGGAAGGGTTC 59.113 52.381 0.00 0.00 35.79 3.62
7309 11334 6.076981 AGCTCTCAAAACATTAACAACCTG 57.923 37.500 0.00 0.00 0.00 4.00
7310 11335 6.998673 AGTAGCTCTCAAAACATTAACAACCT 59.001 34.615 0.00 0.00 0.00 3.50
7557 11582 6.162777 AGATGCTGACTAGTTTTGAGAAGAC 58.837 40.000 0.00 0.00 0.00 3.01
7712 11823 2.235155 TGGCCACATACGTGTATCTGTT 59.765 45.455 0.00 0.00 41.93 3.16
7745 11864 3.459145 TCGTCAAATTTTCTCACACGGA 58.541 40.909 0.00 0.00 0.00 4.69
7781 11909 8.004215 ACAATCCAATTTAGACTATGGGCATAA 58.996 33.333 1.59 0.00 33.66 1.90
7785 11913 6.715347 AACAATCCAATTTAGACTATGGGC 57.285 37.500 1.59 0.00 33.66 5.36
7794 11922 8.984891 TGCACAAGATAAACAATCCAATTTAG 57.015 30.769 0.00 0.00 34.90 1.85
7796 11924 7.444299 ACTGCACAAGATAAACAATCCAATTT 58.556 30.769 0.00 0.00 34.90 1.82
7797 11925 6.996509 ACTGCACAAGATAAACAATCCAATT 58.003 32.000 0.00 0.00 34.90 2.32
7853 11983 4.464244 TCTTCATGACCTTTCACTCGATCT 59.536 41.667 0.00 0.00 33.38 2.75
7898 12028 4.462834 ACCGTGTGACAAGATCTCTTCATA 59.537 41.667 8.95 4.66 33.11 2.15
7925 12055 5.248477 TCAAAGAGCCTGAACCTACATAAGT 59.752 40.000 0.00 0.00 0.00 2.24
7926 12056 5.734720 TCAAAGAGCCTGAACCTACATAAG 58.265 41.667 0.00 0.00 0.00 1.73
8010 12140 8.671921 CGAGACCTAGTTTGTTAGATTGTACTA 58.328 37.037 0.00 0.00 0.00 1.82
8053 12293 5.871396 TTACACCAGAGACCCTGATTATC 57.129 43.478 0.00 0.00 45.78 1.75
8058 12298 3.456644 TGTTTTTACACCAGAGACCCTGA 59.543 43.478 0.00 0.00 45.78 3.86
8059 12299 3.564225 GTGTTTTTACACCAGAGACCCTG 59.436 47.826 0.00 0.00 42.55 4.45
8060 12300 3.458487 AGTGTTTTTACACCAGAGACCCT 59.542 43.478 4.90 0.00 41.26 4.34
8063 12303 5.355910 TCCAAAGTGTTTTTACACCAGAGAC 59.644 40.000 4.90 0.00 41.26 3.36
8067 12307 4.359706 GCTCCAAAGTGTTTTTACACCAG 58.640 43.478 4.90 0.00 41.26 4.00
8072 12312 2.619646 TCGGGCTCCAAAGTGTTTTTAC 59.380 45.455 0.00 0.00 0.00 2.01
8098 12338 1.753930 TCGTGATAACGAGCTACCCA 58.246 50.000 0.00 0.00 37.20 4.51
8150 12390 4.180377 AGAGATCAGAACGGGGTACATA 57.820 45.455 0.00 0.00 0.00 2.29
8153 12393 3.285484 TGTAGAGATCAGAACGGGGTAC 58.715 50.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.