Multiple sequence alignment - TraesCS1B01G156700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G156700 chr1B 100.000 3706 0 0 1 3706 264762073 264765778 0.000000e+00 6844
1 TraesCS1B01G156700 chr1B 90.826 545 34 10 3174 3705 532149517 532150058 0.000000e+00 715
2 TraesCS1B01G156700 chr3D 91.785 1473 70 16 2215 3643 132927627 132929092 0.000000e+00 2002
3 TraesCS1B01G156700 chr6B 90.205 1562 72 33 2215 3705 693975904 693977455 0.000000e+00 1962
4 TraesCS1B01G156700 chr6B 92.614 1354 55 23 2215 3530 693998203 693999549 0.000000e+00 1905
5 TraesCS1B01G156700 chr6B 91.026 1014 48 12 2730 3705 693952883 693953891 0.000000e+00 1328
6 TraesCS1B01G156700 chr6B 90.927 1014 48 13 2730 3705 693958454 693959461 0.000000e+00 1323
7 TraesCS1B01G156700 chr6B 90.927 1014 48 13 2730 3705 693981640 693982647 0.000000e+00 1323
8 TraesCS1B01G156700 chr6B 94.896 529 18 6 2215 2740 693952331 693952853 0.000000e+00 819
9 TraesCS1B01G156700 chr6B 94.717 530 18 6 2215 2740 693957893 693958416 0.000000e+00 815
10 TraesCS1B01G156700 chr6B 94.340 530 20 6 2215 2740 693981091 693981614 0.000000e+00 804
11 TraesCS1B01G156700 chr6B 90.026 381 11 6 3350 3705 693964241 693964619 5.600000e-128 468
12 TraesCS1B01G156700 chr6B 90.026 381 11 6 3350 3705 693999629 694000007 5.600000e-128 468
13 TraesCS1B01G156700 chr6B 98.630 73 1 0 118 190 100747817 100747889 3.000000e-26 130
14 TraesCS1B01G156700 chr7B 89.170 1542 95 33 2218 3706 480695559 480697081 0.000000e+00 1857
15 TraesCS1B01G156700 chr7B 86.925 1369 134 27 2196 3531 74585701 74587057 0.000000e+00 1495
16 TraesCS1B01G156700 chr7B 90.110 91 6 3 118 205 113069132 113069042 8.410000e-22 115
17 TraesCS1B01G156700 chr1D 91.972 1283 63 12 840 2088 191373980 191375256 0.000000e+00 1762
18 TraesCS1B01G156700 chr1D 93.020 659 26 6 190 836 191373047 191373697 0.000000e+00 944
19 TraesCS1B01G156700 chr1D 96.296 81 2 1 2100 2179 191377904 191377984 8.350000e-27 132
20 TraesCS1B01G156700 chr5D 87.201 1547 97 30 2214 3706 407777807 407776308 0.000000e+00 1666
21 TraesCS1B01G156700 chr5D 88.781 1337 116 20 2218 3531 550983989 550982664 0.000000e+00 1607
22 TraesCS1B01G156700 chr5D 84.076 314 42 8 1328 1637 549330898 549330589 2.800000e-76 296
23 TraesCS1B01G156700 chr6D 86.828 1488 122 35 2215 3636 473514602 473513123 0.000000e+00 1594
24 TraesCS1B01G156700 chr2D 88.009 1351 109 27 2215 3519 55388160 55389503 0.000000e+00 1548
25 TraesCS1B01G156700 chr2D 80.157 509 76 16 1328 1822 27837051 27837548 1.270000e-94 357
26 TraesCS1B01G156700 chr5A 89.005 1246 98 17 2216 3427 36023129 36024369 0.000000e+00 1506
27 TraesCS1B01G156700 chr5A 85.316 1362 129 40 2215 3531 705379885 705378550 0.000000e+00 1341
28 TraesCS1B01G156700 chrUn 90.927 1014 48 13 2730 3705 432494290 432495297 0.000000e+00 1323
29 TraesCS1B01G156700 chrUn 94.340 530 20 6 2215 2740 419198904 419199427 0.000000e+00 804
30 TraesCS1B01G156700 chrUn 87.986 283 8 5 3448 3705 452202530 452202811 9.990000e-81 311
31 TraesCS1B01G156700 chr7D 89.100 789 58 15 2215 2980 263971552 263970769 0.000000e+00 955
32 TraesCS1B01G156700 chr5B 87.788 737 70 8 2215 2933 488827702 488828436 0.000000e+00 845
33 TraesCS1B01G156700 chr5B 78.218 505 88 19 1328 1821 700997584 700998077 1.670000e-78 303
34 TraesCS1B01G156700 chr1A 94.151 530 31 0 1287 1816 169727209 169726680 0.000000e+00 808
35 TraesCS1B01G156700 chr1A 93.795 419 10 3 1812 2214 169713554 169713136 1.890000e-172 616
36 TraesCS1B01G156700 chr1A 87.755 392 17 3 543 910 169729136 169728752 2.640000e-116 429
37 TraesCS1B01G156700 chr1A 84.450 373 25 9 190 546 169731694 169731339 1.650000e-88 337
38 TraesCS1B01G156700 chr1A 95.890 73 3 0 118 190 186733895 186733823 6.500000e-23 119
39 TraesCS1B01G156700 chr1A 95.890 73 3 0 118 190 427568518 427568590 6.500000e-23 119
40 TraesCS1B01G156700 chr4B 80.960 625 107 10 1322 1940 550503061 550503679 5.560000e-133 484
41 TraesCS1B01G156700 chr4B 85.312 320 45 2 1330 1648 547205034 547205352 2.760000e-86 329
42 TraesCS1B01G156700 chr4B 98.630 73 1 0 118 190 476357534 476357606 3.000000e-26 130
43 TraesCS1B01G156700 chr4B 95.890 73 3 0 118 190 31657938 31657866 6.500000e-23 119
44 TraesCS1B01G156700 chr4D 85.625 320 44 2 1330 1648 441132113 441132431 5.930000e-88 335
45 TraesCS1B01G156700 chr4A 85.321 327 44 4 1333 1658 26413808 26413485 5.930000e-88 335
46 TraesCS1B01G156700 chr4A 78.150 508 89 19 1328 1824 621009747 621009251 1.670000e-78 303
47 TraesCS1B01G156700 chr4A 97.260 73 2 0 118 190 3394692 3394764 1.400000e-24 124
48 TraesCS1B01G156700 chr3B 97.260 73 2 0 118 190 37966813 37966885 1.400000e-24 124
49 TraesCS1B01G156700 chr6A 95.890 73 3 0 118 190 601937899 601937827 6.500000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G156700 chr1B 264762073 264765778 3705 False 6844.000000 6844 100.000000 1 3706 1 chr1B.!!$F1 3705
1 TraesCS1B01G156700 chr1B 532149517 532150058 541 False 715.000000 715 90.826000 3174 3705 1 chr1B.!!$F2 531
2 TraesCS1B01G156700 chr3D 132927627 132929092 1465 False 2002.000000 2002 91.785000 2215 3643 1 chr3D.!!$F1 1428
3 TraesCS1B01G156700 chr6B 693975904 693982647 6743 False 1363.000000 1962 91.824000 2215 3705 3 chr6B.!!$F5 1490
4 TraesCS1B01G156700 chr6B 693998203 694000007 1804 False 1186.500000 1905 91.320000 2215 3705 2 chr6B.!!$F6 1490
5 TraesCS1B01G156700 chr6B 693952331 693953891 1560 False 1073.500000 1328 92.961000 2215 3705 2 chr6B.!!$F3 1490
6 TraesCS1B01G156700 chr6B 693957893 693959461 1568 False 1069.000000 1323 92.822000 2215 3705 2 chr6B.!!$F4 1490
7 TraesCS1B01G156700 chr7B 480695559 480697081 1522 False 1857.000000 1857 89.170000 2218 3706 1 chr7B.!!$F2 1488
8 TraesCS1B01G156700 chr7B 74585701 74587057 1356 False 1495.000000 1495 86.925000 2196 3531 1 chr7B.!!$F1 1335
9 TraesCS1B01G156700 chr1D 191373047 191377984 4937 False 946.000000 1762 93.762667 190 2179 3 chr1D.!!$F1 1989
10 TraesCS1B01G156700 chr5D 407776308 407777807 1499 True 1666.000000 1666 87.201000 2214 3706 1 chr5D.!!$R1 1492
11 TraesCS1B01G156700 chr5D 550982664 550983989 1325 True 1607.000000 1607 88.781000 2218 3531 1 chr5D.!!$R3 1313
12 TraesCS1B01G156700 chr6D 473513123 473514602 1479 True 1594.000000 1594 86.828000 2215 3636 1 chr6D.!!$R1 1421
13 TraesCS1B01G156700 chr2D 55388160 55389503 1343 False 1548.000000 1548 88.009000 2215 3519 1 chr2D.!!$F2 1304
14 TraesCS1B01G156700 chr5A 36023129 36024369 1240 False 1506.000000 1506 89.005000 2216 3427 1 chr5A.!!$F1 1211
15 TraesCS1B01G156700 chr5A 705378550 705379885 1335 True 1341.000000 1341 85.316000 2215 3531 1 chr5A.!!$R1 1316
16 TraesCS1B01G156700 chrUn 432494290 432495297 1007 False 1323.000000 1323 90.927000 2730 3705 1 chrUn.!!$F2 975
17 TraesCS1B01G156700 chrUn 419198904 419199427 523 False 804.000000 804 94.340000 2215 2740 1 chrUn.!!$F1 525
18 TraesCS1B01G156700 chr7D 263970769 263971552 783 True 955.000000 955 89.100000 2215 2980 1 chr7D.!!$R1 765
19 TraesCS1B01G156700 chr5B 488827702 488828436 734 False 845.000000 845 87.788000 2215 2933 1 chr5B.!!$F1 718
20 TraesCS1B01G156700 chr1A 169726680 169731694 5014 True 524.666667 808 88.785333 190 1816 3 chr1A.!!$R3 1626
21 TraesCS1B01G156700 chr4B 550503061 550503679 618 False 484.000000 484 80.960000 1322 1940 1 chr4B.!!$F3 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.183971 TCCTGCCGGTTCCTCAAAAA 59.816 50.0 1.90 0.00 0.00 1.94 F
1003 4783 0.109597 GGCTTTGAGCAACACCATCG 60.110 55.0 2.04 0.00 44.75 3.84 F
2089 5902 0.111446 TCTCCTAGCTAGGCGATGCT 59.889 55.0 31.76 7.06 43.31 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 8632 0.107066 TACATAGACGGCCGGAGTGA 60.107 55.000 31.76 10.16 0.0 3.41 R
2183 8633 0.959553 ATACATAGACGGCCGGAGTG 59.040 55.000 31.76 22.97 0.0 3.51 R
2952 9528 3.129287 GTGGCATTGGTATTGTCCTTGAG 59.871 47.826 0.00 0.00 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.450976 AGCTAATATCATTCGTGCCAACA 58.549 39.130 0.00 0.00 0.00 3.33
23 24 4.881273 AGCTAATATCATTCGTGCCAACAA 59.119 37.500 0.00 0.00 0.00 2.83
24 25 5.532406 AGCTAATATCATTCGTGCCAACAAT 59.468 36.000 0.00 0.00 0.00 2.71
25 26 6.710295 AGCTAATATCATTCGTGCCAACAATA 59.290 34.615 0.00 0.00 0.00 1.90
26 27 6.797033 GCTAATATCATTCGTGCCAACAATAC 59.203 38.462 0.00 0.00 0.00 1.89
27 28 6.691754 AATATCATTCGTGCCAACAATACA 57.308 33.333 0.00 0.00 0.00 2.29
28 29 6.691754 ATATCATTCGTGCCAACAATACAA 57.308 33.333 0.00 0.00 0.00 2.41
29 30 5.581126 ATCATTCGTGCCAACAATACAAT 57.419 34.783 0.00 0.00 0.00 2.71
30 31 5.384063 TCATTCGTGCCAACAATACAATT 57.616 34.783 0.00 0.00 0.00 2.32
31 32 5.777802 TCATTCGTGCCAACAATACAATTT 58.222 33.333 0.00 0.00 0.00 1.82
32 33 6.219473 TCATTCGTGCCAACAATACAATTTT 58.781 32.000 0.00 0.00 0.00 1.82
33 34 5.896922 TTCGTGCCAACAATACAATTTTG 57.103 34.783 0.00 0.00 0.00 2.44
34 35 5.188327 TCGTGCCAACAATACAATTTTGA 57.812 34.783 0.00 0.00 0.00 2.69
35 36 5.777802 TCGTGCCAACAATACAATTTTGAT 58.222 33.333 0.00 0.00 0.00 2.57
36 37 5.632764 TCGTGCCAACAATACAATTTTGATG 59.367 36.000 0.00 0.00 0.00 3.07
37 38 5.620467 GTGCCAACAATACAATTTTGATGC 58.380 37.500 0.00 0.00 0.00 3.91
38 39 4.388165 TGCCAACAATACAATTTTGATGCG 59.612 37.500 0.00 0.00 0.00 4.73
39 40 4.624882 GCCAACAATACAATTTTGATGCGA 59.375 37.500 0.00 0.00 0.00 5.10
40 41 5.291614 GCCAACAATACAATTTTGATGCGAT 59.708 36.000 0.00 0.00 0.00 4.58
41 42 6.698107 CCAACAATACAATTTTGATGCGATG 58.302 36.000 0.00 0.00 0.00 3.84
42 43 6.530887 CCAACAATACAATTTTGATGCGATGA 59.469 34.615 0.00 0.00 0.00 2.92
43 44 7.385650 CAACAATACAATTTTGATGCGATGAC 58.614 34.615 0.00 0.00 0.00 3.06
44 45 6.619744 ACAATACAATTTTGATGCGATGACA 58.380 32.000 0.00 0.00 0.00 3.58
45 46 7.259882 ACAATACAATTTTGATGCGATGACAT 58.740 30.769 0.00 0.00 0.00 3.06
46 47 8.404765 ACAATACAATTTTGATGCGATGACATA 58.595 29.630 0.00 0.00 0.00 2.29
47 48 9.401873 CAATACAATTTTGATGCGATGACATAT 57.598 29.630 0.00 0.00 0.00 1.78
48 49 9.970395 AATACAATTTTGATGCGATGACATATT 57.030 25.926 0.00 0.00 0.00 1.28
51 52 8.623903 ACAATTTTGATGCGATGACATATTAGT 58.376 29.630 0.00 0.00 0.00 2.24
52 53 9.454585 CAATTTTGATGCGATGACATATTAGTT 57.545 29.630 0.00 0.00 0.00 2.24
55 56 9.853555 TTTTGATGCGATGACATATTAGTTTTT 57.146 25.926 0.00 0.00 0.00 1.94
77 78 8.980481 TTTTTGTTCTTCTTCCAGATAGTCTT 57.020 30.769 0.00 0.00 0.00 3.01
78 79 8.980481 TTTTGTTCTTCTTCCAGATAGTCTTT 57.020 30.769 0.00 0.00 0.00 2.52
79 80 8.980481 TTTGTTCTTCTTCCAGATAGTCTTTT 57.020 30.769 0.00 0.00 0.00 2.27
80 81 7.969536 TGTTCTTCTTCCAGATAGTCTTTTG 57.030 36.000 0.00 0.00 0.00 2.44
81 82 7.509546 TGTTCTTCTTCCAGATAGTCTTTTGT 58.490 34.615 0.00 0.00 0.00 2.83
82 83 7.993183 TGTTCTTCTTCCAGATAGTCTTTTGTT 59.007 33.333 0.00 0.00 0.00 2.83
83 84 9.490379 GTTCTTCTTCCAGATAGTCTTTTGTTA 57.510 33.333 0.00 0.00 0.00 2.41
91 92 9.832445 TCCAGATAGTCTTTTGTTATATGAACC 57.168 33.333 0.00 0.00 0.00 3.62
92 93 9.838339 CCAGATAGTCTTTTGTTATATGAACCT 57.162 33.333 0.00 0.00 0.00 3.50
137 138 9.569122 ACATAAAACACTCTTGTACATAAACCT 57.431 29.630 0.00 0.00 33.55 3.50
163 164 9.661563 TTATTCTTCTTCTTATACGAAAAGGCA 57.338 29.630 0.00 3.82 0.00 4.75
164 165 7.596749 TTCTTCTTCTTATACGAAAAGGCAG 57.403 36.000 0.00 0.00 0.00 4.85
165 166 6.698380 TCTTCTTCTTATACGAAAAGGCAGT 58.302 36.000 0.00 0.00 0.00 4.40
166 167 6.590292 TCTTCTTCTTATACGAAAAGGCAGTG 59.410 38.462 0.00 0.00 0.00 3.66
167 168 4.630069 TCTTCTTATACGAAAAGGCAGTGC 59.370 41.667 6.55 6.55 0.00 4.40
168 169 4.202245 TCTTATACGAAAAGGCAGTGCT 57.798 40.909 16.11 0.00 0.00 4.40
169 170 4.181578 TCTTATACGAAAAGGCAGTGCTC 58.818 43.478 16.11 5.23 0.00 4.26
170 171 1.739067 ATACGAAAAGGCAGTGCTCC 58.261 50.000 16.11 0.00 0.00 4.70
171 172 0.685097 TACGAAAAGGCAGTGCTCCT 59.315 50.000 16.11 0.92 34.90 3.69
172 173 0.886490 ACGAAAAGGCAGTGCTCCTG 60.886 55.000 16.11 3.24 44.53 3.86
179 180 2.743928 CAGTGCTCCTGCCGGTTC 60.744 66.667 1.90 0.00 38.71 3.62
180 181 4.021925 AGTGCTCCTGCCGGTTCC 62.022 66.667 1.90 0.00 38.71 3.62
181 182 4.021925 GTGCTCCTGCCGGTTCCT 62.022 66.667 1.90 0.00 38.71 3.36
182 183 3.706373 TGCTCCTGCCGGTTCCTC 61.706 66.667 1.90 0.00 38.71 3.71
183 184 3.706373 GCTCCTGCCGGTTCCTCA 61.706 66.667 1.90 0.00 0.00 3.86
184 185 3.068881 CTCCTGCCGGTTCCTCAA 58.931 61.111 1.90 0.00 0.00 3.02
185 186 1.374947 CTCCTGCCGGTTCCTCAAA 59.625 57.895 1.90 0.00 0.00 2.69
186 187 0.250727 CTCCTGCCGGTTCCTCAAAA 60.251 55.000 1.90 0.00 0.00 2.44
187 188 0.183971 TCCTGCCGGTTCCTCAAAAA 59.816 50.000 1.90 0.00 0.00 1.94
281 282 8.997621 TCCATAAAGAACTGTACAAGTCATAC 57.002 34.615 0.00 0.00 38.56 2.39
313 317 6.220201 AGTTGACATTAATTTCCAAAACCCG 58.780 36.000 0.00 0.00 0.00 5.28
325 329 2.351350 CCAAAACCCGTCGAAATTCCAG 60.351 50.000 0.00 0.00 0.00 3.86
327 331 2.094762 AACCCGTCGAAATTCCAGAG 57.905 50.000 0.00 0.00 0.00 3.35
328 332 1.263356 ACCCGTCGAAATTCCAGAGA 58.737 50.000 0.00 0.00 0.00 3.10
329 333 1.067071 ACCCGTCGAAATTCCAGAGAC 60.067 52.381 0.00 0.00 0.00 3.36
330 334 1.067142 CCCGTCGAAATTCCAGAGACA 60.067 52.381 0.00 0.00 32.57 3.41
331 335 2.418746 CCCGTCGAAATTCCAGAGACAT 60.419 50.000 0.00 0.00 32.57 3.06
332 336 3.181479 CCCGTCGAAATTCCAGAGACATA 60.181 47.826 0.00 0.00 32.57 2.29
333 337 3.797256 CCGTCGAAATTCCAGAGACATAC 59.203 47.826 0.00 0.00 32.57 2.39
334 338 4.440250 CCGTCGAAATTCCAGAGACATACT 60.440 45.833 0.00 0.00 32.57 2.12
335 339 4.500837 CGTCGAAATTCCAGAGACATACTG 59.499 45.833 0.00 0.00 35.43 2.74
338 342 6.693545 GTCGAAATTCCAGAGACATACTGTAG 59.306 42.308 0.00 0.00 34.04 2.74
396 412 6.723131 AGCAATAGTTCCTTCGTTTCTAAC 57.277 37.500 0.00 0.00 0.00 2.34
434 450 1.868498 GTTACAACTGGCACGTTAGCA 59.132 47.619 0.00 0.00 35.83 3.49
436 452 0.874390 ACAACTGGCACGTTAGCATG 59.126 50.000 0.00 0.00 35.83 4.06
476 492 1.895798 TGATGATCTATCCGGCCACTC 59.104 52.381 2.24 0.00 34.77 3.51
606 2828 5.862924 AAACACATCGAGAACATTACAGG 57.137 39.130 0.00 0.00 0.00 4.00
615 2837 8.706936 CATCGAGAACATTACAGGATTAATCAG 58.293 37.037 17.07 10.99 0.00 2.90
620 2842 6.699575 ACATTACAGGATTAATCAGTTGGC 57.300 37.500 17.07 0.00 0.00 4.52
831 3087 4.216257 CCTAATTAACAATGGCCTGATCCG 59.784 45.833 3.32 0.00 0.00 4.18
851 3107 1.004927 GTCAGTGGTGCGCGATTAATC 60.005 52.381 12.10 5.30 0.00 1.75
855 3111 1.092921 TGGTGCGCGATTAATCCCAC 61.093 55.000 12.10 13.08 0.00 4.61
872 3128 1.541147 CCACACGCCAAAGTCAATGAT 59.459 47.619 0.00 0.00 0.00 2.45
910 4690 7.145932 ACAATTAGCTAGCTAACTTTTGTGG 57.854 36.000 33.59 21.95 40.76 4.17
920 4700 4.214332 GCTAACTTTTGTGGGAGTTCTCTG 59.786 45.833 0.00 0.00 37.32 3.35
926 4706 1.461268 TGGGAGTTCTCTGTGGCCA 60.461 57.895 0.00 0.00 0.00 5.36
928 4708 0.329596 GGGAGTTCTCTGTGGCCATT 59.670 55.000 9.72 0.00 0.00 3.16
930 4710 2.026262 GGGAGTTCTCTGTGGCCATTAA 60.026 50.000 9.72 0.00 0.00 1.40
932 4712 4.141482 GGGAGTTCTCTGTGGCCATTAATA 60.141 45.833 9.72 0.00 0.00 0.98
947 4727 5.833131 GCCATTAATAAACTTCCTCCCATCA 59.167 40.000 0.00 0.00 0.00 3.07
1003 4783 0.109597 GGCTTTGAGCAACACCATCG 60.110 55.000 2.04 0.00 44.75 3.84
1009 4789 0.666274 GAGCAACACCATCGTCGTCA 60.666 55.000 0.00 0.00 0.00 4.35
1046 4826 3.857093 CGAACCACAAGTTTTTGTCCTTG 59.143 43.478 0.00 0.00 45.53 3.61
1066 4846 0.305009 TCTCGTGCTCGATCGATCAC 59.695 55.000 31.96 31.96 45.21 3.06
1237 5017 2.486191 CCACCTAGCTAGCATTTCCCAG 60.486 54.545 18.83 0.90 0.00 4.45
1238 5018 2.171448 CACCTAGCTAGCATTTCCCAGT 59.829 50.000 18.83 1.55 0.00 4.00
1239 5019 2.436173 ACCTAGCTAGCATTTCCCAGTC 59.564 50.000 18.83 0.00 0.00 3.51
1240 5020 2.546795 CCTAGCTAGCATTTCCCAGTCG 60.547 54.545 18.83 0.00 0.00 4.18
1246 5026 1.003580 AGCATTTCCCAGTCGTCACAT 59.996 47.619 0.00 0.00 0.00 3.21
1253 5033 1.066858 CCCAGTCGTCACATGTTAGCT 60.067 52.381 0.00 0.00 0.00 3.32
1256 5036 3.859961 CCAGTCGTCACATGTTAGCTAAG 59.140 47.826 6.38 0.00 0.00 2.18
1260 5040 5.360144 AGTCGTCACATGTTAGCTAAGGTAT 59.640 40.000 6.38 0.00 0.00 2.73
1269 5049 5.359756 TGTTAGCTAAGGTATGCTCATGTG 58.640 41.667 6.38 0.00 40.35 3.21
1271 5051 4.333913 AGCTAAGGTATGCTCATGTGAG 57.666 45.455 5.66 5.66 44.75 3.51
1273 5053 2.338577 AAGGTATGCTCATGTGAGGC 57.661 50.000 11.66 5.14 42.29 4.70
1274 5054 1.504912 AGGTATGCTCATGTGAGGCT 58.495 50.000 11.66 0.00 42.29 4.58
1275 5055 1.140452 AGGTATGCTCATGTGAGGCTG 59.860 52.381 11.66 0.00 42.29 4.85
1276 5056 0.942962 GTATGCTCATGTGAGGCTGC 59.057 55.000 11.66 0.00 42.29 5.25
1277 5057 0.179037 TATGCTCATGTGAGGCTGCC 60.179 55.000 11.65 11.65 42.29 4.85
1278 5058 2.045634 GCTCATGTGAGGCTGCCA 60.046 61.111 22.65 0.00 42.29 4.92
1279 5059 1.676635 GCTCATGTGAGGCTGCCAA 60.677 57.895 22.65 5.63 42.29 4.52
1282 5079 0.328926 TCATGTGAGGCTGCCAATGA 59.671 50.000 22.65 19.23 0.00 2.57
1317 5114 5.575157 ACTGACAGTCCTCTTCTCTAATCA 58.425 41.667 1.07 0.00 0.00 2.57
1320 5117 7.180051 ACTGACAGTCCTCTTCTCTAATCAATT 59.820 37.037 1.07 0.00 0.00 2.32
1700 5497 2.114670 CACCATCGCCGGCTTCAAT 61.115 57.895 26.68 9.76 0.00 2.57
1969 5766 5.046529 GCAGTTCGACTATTGAGACATCAT 58.953 41.667 0.00 0.00 34.73 2.45
1974 5771 8.633561 AGTTCGACTATTGAGACATCATCATAA 58.366 33.333 0.00 0.00 34.73 1.90
1975 5772 8.910666 GTTCGACTATTGAGACATCATCATAAG 58.089 37.037 0.00 0.00 34.73 1.73
2007 5820 1.290009 GTGCCACAATGGGTGCTTC 59.710 57.895 0.00 0.00 46.50 3.86
2046 5859 0.541392 ACGAAGCTGCATGGATACCA 59.459 50.000 1.02 0.00 38.19 3.25
2052 5865 2.240667 AGCTGCATGGATACCAGACTTT 59.759 45.455 1.02 0.00 36.75 2.66
2053 5866 3.455910 AGCTGCATGGATACCAGACTTTA 59.544 43.478 1.02 0.00 36.75 1.85
2061 5874 3.054655 GGATACCAGACTTTAGTGGCCAA 60.055 47.826 7.24 0.00 37.34 4.52
2088 5901 1.181786 ATCTCCTAGCTAGGCGATGC 58.818 55.000 34.31 0.00 44.05 3.91
2089 5902 0.111446 TCTCCTAGCTAGGCGATGCT 59.889 55.000 31.76 7.06 43.31 3.79
2090 5903 0.525761 CTCCTAGCTAGGCGATGCTC 59.474 60.000 31.76 0.00 43.31 4.26
2091 5904 0.896019 TCCTAGCTAGGCGATGCTCC 60.896 60.000 31.76 0.00 43.31 4.70
2092 5905 1.211449 CTAGCTAGGCGATGCTCCG 59.789 63.158 13.32 0.00 40.35 4.63
2094 5907 1.516365 TAGCTAGGCGATGCTCCGAC 61.516 60.000 5.32 0.00 40.35 4.79
2099 5912 3.260483 GCGATGCTCCGACTGCAG 61.260 66.667 13.48 13.48 44.04 4.41
2100 5913 2.584418 CGATGCTCCGACTGCAGG 60.584 66.667 19.93 0.43 44.04 4.85
2101 5914 2.895680 GATGCTCCGACTGCAGGA 59.104 61.111 19.93 5.77 44.04 3.86
2138 8588 1.135746 CGTAACTTCGCTTCCTCGTCT 60.136 52.381 0.00 0.00 0.00 4.18
2189 8639 9.367444 AGTTATTTTCTACTGTAATTCACTCCG 57.633 33.333 0.00 0.00 0.00 4.63
2190 8640 8.601476 GTTATTTTCTACTGTAATTCACTCCGG 58.399 37.037 0.00 0.00 0.00 5.14
2191 8641 3.795623 TCTACTGTAATTCACTCCGGC 57.204 47.619 0.00 0.00 0.00 6.13
2192 8642 2.429610 TCTACTGTAATTCACTCCGGCC 59.570 50.000 0.00 0.00 0.00 6.13
2193 8643 0.108329 ACTGTAATTCACTCCGGCCG 60.108 55.000 21.04 21.04 0.00 6.13
2194 8644 0.108329 CTGTAATTCACTCCGGCCGT 60.108 55.000 26.12 1.61 0.00 5.68
2195 8645 0.108520 TGTAATTCACTCCGGCCGTC 60.109 55.000 26.12 1.74 0.00 4.79
2196 8646 0.175073 GTAATTCACTCCGGCCGTCT 59.825 55.000 26.12 1.91 0.00 4.18
2197 8647 1.406539 GTAATTCACTCCGGCCGTCTA 59.593 52.381 26.12 8.24 0.00 2.59
2198 8648 1.120530 AATTCACTCCGGCCGTCTAT 58.879 50.000 26.12 3.13 0.00 1.98
2199 8649 0.389391 ATTCACTCCGGCCGTCTATG 59.611 55.000 26.12 16.34 0.00 2.23
2200 8650 0.968901 TTCACTCCGGCCGTCTATGT 60.969 55.000 26.12 11.87 0.00 2.29
2201 8651 0.107066 TCACTCCGGCCGTCTATGTA 60.107 55.000 26.12 0.00 0.00 2.29
2202 8652 0.959553 CACTCCGGCCGTCTATGTAT 59.040 55.000 26.12 0.00 0.00 2.29
2203 8653 0.959553 ACTCCGGCCGTCTATGTATG 59.040 55.000 26.12 5.01 0.00 2.39
2204 8654 0.959553 CTCCGGCCGTCTATGTATGT 59.040 55.000 26.12 0.00 0.00 2.29
2205 8655 2.156917 CTCCGGCCGTCTATGTATGTA 58.843 52.381 26.12 0.00 0.00 2.29
2206 8656 2.753452 CTCCGGCCGTCTATGTATGTAT 59.247 50.000 26.12 0.00 0.00 2.29
2207 8657 3.943381 CTCCGGCCGTCTATGTATGTATA 59.057 47.826 26.12 0.00 0.00 1.47
2208 8658 4.334552 TCCGGCCGTCTATGTATGTATAA 58.665 43.478 26.12 0.00 0.00 0.98
2209 8659 4.766373 TCCGGCCGTCTATGTATGTATAAA 59.234 41.667 26.12 0.00 0.00 1.40
2210 8660 4.860907 CCGGCCGTCTATGTATGTATAAAC 59.139 45.833 26.12 0.00 0.00 2.01
2211 8661 4.860907 CGGCCGTCTATGTATGTATAAACC 59.139 45.833 19.50 0.00 0.00 3.27
2212 8662 5.336213 CGGCCGTCTATGTATGTATAAACCT 60.336 44.000 19.50 0.00 0.00 3.50
2747 9308 4.875536 TGCGTATGTATGCATGAAAGAACT 59.124 37.500 10.16 0.00 42.78 3.01
2748 9309 6.045955 TGCGTATGTATGCATGAAAGAACTA 58.954 36.000 10.16 0.00 42.78 2.24
2749 9310 6.705825 TGCGTATGTATGCATGAAAGAACTAT 59.294 34.615 10.16 0.00 42.78 2.12
2750 9311 7.870445 TGCGTATGTATGCATGAAAGAACTATA 59.130 33.333 10.16 0.00 42.78 1.31
2751 9312 8.873830 GCGTATGTATGCATGAAAGAACTATAT 58.126 33.333 10.16 0.00 38.10 0.86
2821 9391 6.690957 TCGCTGCATATTATAAAAAGTGCAAC 59.309 34.615 14.27 10.84 38.07 4.17
3132 9708 7.909485 TTTTTGTTAAAGGGTGGTACCAATA 57.091 32.000 18.31 2.44 41.02 1.90
3491 15333 8.807948 TTAAAGGGTTTCATTCTTCCATAGAG 57.192 34.615 0.00 0.00 33.51 2.43
3496 15338 7.403231 AGGGTTTCATTCTTCCATAGAGAACTA 59.597 37.037 0.00 0.00 36.08 2.24
3506 15383 9.582431 TCTTCCATAGAGAACTACGTTATTTTG 57.418 33.333 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.811555 TGTTGGCACGAATGATATTAGC 57.188 40.909 0.00 0.00 0.00 3.09
2 3 7.860613 TGTATTGTTGGCACGAATGATATTAG 58.139 34.615 0.00 0.00 0.00 1.73
4 5 6.691754 TGTATTGTTGGCACGAATGATATT 57.308 33.333 0.00 0.00 0.00 1.28
5 6 6.691754 TTGTATTGTTGGCACGAATGATAT 57.308 33.333 0.00 0.00 0.00 1.63
7 8 5.581126 ATTGTATTGTTGGCACGAATGAT 57.419 34.783 0.00 0.00 0.00 2.45
8 9 5.384063 AATTGTATTGTTGGCACGAATGA 57.616 34.783 0.00 0.00 0.00 2.57
9 10 6.145209 TCAAAATTGTATTGTTGGCACGAATG 59.855 34.615 0.00 0.00 0.00 2.67
11 12 5.592054 TCAAAATTGTATTGTTGGCACGAA 58.408 33.333 0.00 0.00 0.00 3.85
12 13 5.188327 TCAAAATTGTATTGTTGGCACGA 57.812 34.783 0.00 0.00 0.00 4.35
13 14 5.668376 GCATCAAAATTGTATTGTTGGCACG 60.668 40.000 0.00 0.00 31.33 5.34
14 15 5.620467 GCATCAAAATTGTATTGTTGGCAC 58.380 37.500 0.00 0.00 31.33 5.01
16 17 4.624882 TCGCATCAAAATTGTATTGTTGGC 59.375 37.500 0.00 0.00 31.33 4.52
18 19 7.062022 TGTCATCGCATCAAAATTGTATTGTTG 59.938 33.333 0.00 0.00 32.96 3.33
19 20 7.089538 TGTCATCGCATCAAAATTGTATTGTT 58.910 30.769 0.00 0.00 0.00 2.83
20 21 6.619744 TGTCATCGCATCAAAATTGTATTGT 58.380 32.000 0.00 0.00 0.00 2.71
21 22 7.688478 ATGTCATCGCATCAAAATTGTATTG 57.312 32.000 0.00 0.00 0.00 1.90
22 23 9.970395 AATATGTCATCGCATCAAAATTGTATT 57.030 25.926 0.00 0.00 0.00 1.89
25 26 8.623903 ACTAATATGTCATCGCATCAAAATTGT 58.376 29.630 0.00 0.00 0.00 2.71
26 27 9.454585 AACTAATATGTCATCGCATCAAAATTG 57.545 29.630 0.00 0.00 0.00 2.32
29 30 9.853555 AAAAACTAATATGTCATCGCATCAAAA 57.146 25.926 0.00 0.00 0.00 2.44
65 66 9.832445 GGTTCATATAACAAAAGACTATCTGGA 57.168 33.333 0.00 0.00 0.00 3.86
66 67 9.838339 AGGTTCATATAACAAAAGACTATCTGG 57.162 33.333 0.00 0.00 0.00 3.86
111 112 9.569122 AGGTTTATGTACAAGAGTGTTTTATGT 57.431 29.630 0.00 0.00 39.30 2.29
137 138 9.661563 TGCCTTTTCGTATAAGAAGAAGAATAA 57.338 29.630 16.79 3.60 0.00 1.40
138 139 9.314321 CTGCCTTTTCGTATAAGAAGAAGAATA 57.686 33.333 16.79 8.08 0.00 1.75
139 140 7.824779 ACTGCCTTTTCGTATAAGAAGAAGAAT 59.175 33.333 16.79 5.11 0.00 2.40
140 141 7.117812 CACTGCCTTTTCGTATAAGAAGAAGAA 59.882 37.037 16.79 4.86 0.00 2.52
141 142 6.590292 CACTGCCTTTTCGTATAAGAAGAAGA 59.410 38.462 16.79 0.00 0.00 2.87
142 143 6.673316 GCACTGCCTTTTCGTATAAGAAGAAG 60.673 42.308 1.38 8.16 0.00 2.85
143 144 5.121768 GCACTGCCTTTTCGTATAAGAAGAA 59.878 40.000 1.38 0.29 0.00 2.52
144 145 4.630069 GCACTGCCTTTTCGTATAAGAAGA 59.370 41.667 1.38 0.00 0.00 2.87
145 146 4.631813 AGCACTGCCTTTTCGTATAAGAAG 59.368 41.667 0.00 0.00 0.00 2.85
146 147 4.575885 AGCACTGCCTTTTCGTATAAGAA 58.424 39.130 0.00 0.00 0.00 2.52
147 148 4.181578 GAGCACTGCCTTTTCGTATAAGA 58.818 43.478 0.00 0.00 0.00 2.10
148 149 3.309954 GGAGCACTGCCTTTTCGTATAAG 59.690 47.826 0.00 0.00 0.00 1.73
149 150 3.055385 AGGAGCACTGCCTTTTCGTATAA 60.055 43.478 0.00 0.00 29.44 0.98
150 151 2.500098 AGGAGCACTGCCTTTTCGTATA 59.500 45.455 0.00 0.00 29.44 1.47
151 152 1.279271 AGGAGCACTGCCTTTTCGTAT 59.721 47.619 0.00 0.00 29.44 3.06
152 153 0.685097 AGGAGCACTGCCTTTTCGTA 59.315 50.000 0.00 0.00 29.44 3.43
153 154 0.886490 CAGGAGCACTGCCTTTTCGT 60.886 55.000 0.00 0.00 40.97 3.85
154 155 1.871772 CAGGAGCACTGCCTTTTCG 59.128 57.895 0.00 0.00 40.97 3.46
163 164 4.021925 GGAACCGGCAGGAGCACT 62.022 66.667 10.86 0.00 44.61 4.40
164 165 3.959991 GAGGAACCGGCAGGAGCAC 62.960 68.421 10.86 0.00 44.61 4.40
165 166 3.706373 GAGGAACCGGCAGGAGCA 61.706 66.667 10.86 0.00 44.61 4.26
166 167 2.748058 TTTGAGGAACCGGCAGGAGC 62.748 60.000 10.86 0.05 41.02 4.70
167 168 0.250727 TTTTGAGGAACCGGCAGGAG 60.251 55.000 10.86 0.00 41.02 3.69
168 169 0.183971 TTTTTGAGGAACCGGCAGGA 59.816 50.000 10.86 0.00 41.02 3.86
169 170 2.727103 TTTTTGAGGAACCGGCAGG 58.273 52.632 0.00 0.00 45.13 4.85
313 317 5.957910 CAGTATGTCTCTGGAATTTCGAC 57.042 43.478 0.00 0.00 0.00 4.20
381 397 4.510340 GTCTGCAAGTTAGAAACGAAGGAA 59.490 41.667 0.00 0.00 36.23 3.36
396 412 1.901591 ACTCCATGTTGGTCTGCAAG 58.098 50.000 0.00 0.00 39.03 4.01
434 450 4.473520 CAGAAGACGCCGGCCCAT 62.474 66.667 23.46 6.52 0.00 4.00
436 452 2.306255 TATTCAGAAGACGCCGGCCC 62.306 60.000 23.46 13.55 0.00 5.80
606 2828 7.814107 TCAGAAACAATTGCCAACTGATTAATC 59.186 33.333 8.60 8.60 0.00 1.75
615 2837 4.525912 ATCCTCAGAAACAATTGCCAAC 57.474 40.909 5.05 0.00 0.00 3.77
620 2842 3.441572 AGCCGAATCCTCAGAAACAATTG 59.558 43.478 3.24 3.24 0.00 2.32
831 3087 1.004927 GATTAATCGCGCACCACTGAC 60.005 52.381 8.75 0.00 0.00 3.51
846 3102 2.156098 GACTTTGGCGTGTGGGATTAA 58.844 47.619 0.00 0.00 0.00 1.40
851 3107 0.039256 CATTGACTTTGGCGTGTGGG 60.039 55.000 0.00 0.00 0.00 4.61
855 3111 1.133025 GGGATCATTGACTTTGGCGTG 59.867 52.381 0.00 0.00 0.00 5.34
872 3128 4.410228 AGCTAATTGTTATGCTCTCTGGGA 59.590 41.667 0.00 0.00 0.00 4.37
890 4670 5.012768 ACTCCCACAAAAGTTAGCTAGCTAA 59.987 40.000 29.22 29.22 36.31 3.09
910 4690 3.350219 TTAATGGCCACAGAGAACTCC 57.650 47.619 8.16 0.00 0.00 3.85
920 4700 4.341235 GGGAGGAAGTTTATTAATGGCCAC 59.659 45.833 8.16 0.00 0.00 5.01
928 4708 9.131791 GCTAATTTGATGGGAGGAAGTTTATTA 57.868 33.333 0.00 0.00 0.00 0.98
930 4710 7.357471 AGCTAATTTGATGGGAGGAAGTTTAT 58.643 34.615 0.00 0.00 0.00 1.40
932 4712 5.583932 AGCTAATTTGATGGGAGGAAGTTT 58.416 37.500 0.00 0.00 0.00 2.66
991 4771 0.944311 GTGACGACGATGGTGTTGCT 60.944 55.000 0.00 0.00 0.00 3.91
1003 4783 0.731855 GCTAACGGTGAGGTGACGAC 60.732 60.000 0.00 0.00 0.00 4.34
1009 4789 0.243095 GTTCGAGCTAACGGTGAGGT 59.757 55.000 0.00 0.00 0.00 3.85
1237 5017 3.846360 ACCTTAGCTAACATGTGACGAC 58.154 45.455 0.86 0.00 0.00 4.34
1238 5018 5.588240 CATACCTTAGCTAACATGTGACGA 58.412 41.667 0.86 0.00 0.00 4.20
1239 5019 4.209288 GCATACCTTAGCTAACATGTGACG 59.791 45.833 0.86 0.00 0.00 4.35
1240 5020 5.360591 AGCATACCTTAGCTAACATGTGAC 58.639 41.667 0.86 0.00 39.78 3.67
1246 5026 5.128663 TCACATGAGCATACCTTAGCTAACA 59.871 40.000 0.86 0.00 42.04 2.41
1253 5033 3.041211 AGCCTCACATGAGCATACCTTA 58.959 45.455 0.00 0.00 40.75 2.69
1256 5036 1.590932 CAGCCTCACATGAGCATACC 58.409 55.000 0.00 0.00 40.75 2.73
1260 5040 2.045634 GGCAGCCTCACATGAGCA 60.046 61.111 3.29 0.00 40.75 4.26
1269 5049 3.885521 GCGCTCATTGGCAGCCTC 61.886 66.667 14.15 0.00 32.83 4.70
1271 5051 3.885521 GAGCGCTCATTGGCAGCC 61.886 66.667 31.91 3.66 34.30 4.85
1273 5053 4.233635 GCGAGCGCTCATTGGCAG 62.234 66.667 34.69 18.62 38.26 4.85
1317 5114 2.936202 AGCGCCACCTGATGATTAATT 58.064 42.857 2.29 0.00 0.00 1.40
1320 5117 1.667236 CAAGCGCCACCTGATGATTA 58.333 50.000 2.29 0.00 0.00 1.75
1940 5737 5.286558 GTCTCAATAGTCGAACTGCTTGTAC 59.713 44.000 0.00 0.00 0.00 2.90
1969 5766 1.001520 CCGTGTGTGGTGGACTTATGA 59.998 52.381 0.00 0.00 0.00 2.15
1994 5791 2.616330 CGCACGAAGCACCCATTGT 61.616 57.895 0.00 0.00 46.13 2.71
1995 5792 2.176546 CGCACGAAGCACCCATTG 59.823 61.111 0.00 0.00 46.13 2.82
2026 5839 0.940126 GGTATCCATGCAGCTTCGTG 59.060 55.000 0.00 0.00 0.00 4.35
2046 5859 2.912956 TCCATCTTGGCCACTAAAGTCT 59.087 45.455 3.88 0.00 37.47 3.24
2052 5865 3.840666 GGAGATATCCATCTTGGCCACTA 59.159 47.826 3.88 0.00 41.78 2.74
2053 5866 2.641815 GGAGATATCCATCTTGGCCACT 59.358 50.000 3.88 0.00 41.78 4.00
2061 5874 4.688597 CGCCTAGCTAGGAGATATCCATCT 60.689 50.000 38.74 4.86 46.63 2.90
2088 5901 2.575993 CACCTCCTGCAGTCGGAG 59.424 66.667 21.42 17.15 46.11 4.63
2089 5902 3.695606 GCACCTCCTGCAGTCGGA 61.696 66.667 21.42 9.01 46.29 4.55
2099 5912 4.796231 ATCGTCGTGCGCACCTCC 62.796 66.667 33.23 19.84 41.07 4.30
2100 5913 3.545481 CATCGTCGTGCGCACCTC 61.545 66.667 33.23 23.85 41.07 3.85
2138 8588 9.515020 CTAAATTAAGCAACAAGAAGAAACACA 57.485 29.630 0.00 0.00 0.00 3.72
2179 8629 1.120530 ATAGACGGCCGGAGTGAATT 58.879 50.000 31.76 4.91 0.00 2.17
2180 8630 0.389391 CATAGACGGCCGGAGTGAAT 59.611 55.000 31.76 5.85 0.00 2.57
2181 8631 0.968901 ACATAGACGGCCGGAGTGAA 60.969 55.000 31.76 8.78 0.00 3.18
2182 8632 0.107066 TACATAGACGGCCGGAGTGA 60.107 55.000 31.76 10.16 0.00 3.41
2183 8633 0.959553 ATACATAGACGGCCGGAGTG 59.040 55.000 31.76 22.97 0.00 3.51
2184 8634 0.959553 CATACATAGACGGCCGGAGT 59.040 55.000 31.76 20.80 0.00 3.85
2185 8635 0.959553 ACATACATAGACGGCCGGAG 59.040 55.000 31.76 16.01 0.00 4.63
2186 8636 2.275134 TACATACATAGACGGCCGGA 57.725 50.000 31.76 15.07 0.00 5.14
2187 8637 4.707030 TTATACATACATAGACGGCCGG 57.293 45.455 31.76 13.93 0.00 6.13
2188 8638 4.860907 GGTTTATACATACATAGACGGCCG 59.139 45.833 26.86 26.86 0.00 6.13
2189 8639 6.034161 AGGTTTATACATACATAGACGGCC 57.966 41.667 0.00 0.00 0.00 6.13
2190 8640 7.149973 TGAAGGTTTATACATACATAGACGGC 58.850 38.462 0.00 0.00 0.00 5.68
2191 8641 9.706691 ATTGAAGGTTTATACATACATAGACGG 57.293 33.333 0.00 0.00 0.00 4.79
2207 8657 9.301897 ACTGAAATCTAGCTAAATTGAAGGTTT 57.698 29.630 0.00 0.00 0.00 3.27
2208 8658 8.870075 ACTGAAATCTAGCTAAATTGAAGGTT 57.130 30.769 0.00 0.00 0.00 3.50
2209 8659 8.103305 TGACTGAAATCTAGCTAAATTGAAGGT 58.897 33.333 0.00 0.00 0.00 3.50
2210 8660 8.498054 TGACTGAAATCTAGCTAAATTGAAGG 57.502 34.615 0.00 0.00 0.00 3.46
2211 8661 8.121708 GCTGACTGAAATCTAGCTAAATTGAAG 58.878 37.037 0.00 0.00 0.00 3.02
2212 8662 7.826252 AGCTGACTGAAATCTAGCTAAATTGAA 59.174 33.333 0.00 0.00 42.45 2.69
2821 9391 2.187707 GCACACAACTTTGCAGTGAAG 58.812 47.619 15.49 2.69 38.81 3.02
2879 9451 6.357367 AGAGGGAATAAATTAGCGACATTGT 58.643 36.000 0.00 0.00 0.00 2.71
2952 9528 3.129287 GTGGCATTGGTATTGTCCTTGAG 59.871 47.826 0.00 0.00 0.00 3.02
3061 9637 5.433855 GCAATTTGCACACAATTTACACAG 58.566 37.500 16.35 0.00 44.26 3.66
3110 9686 6.897706 GTATTGGTACCACCCTTTAACAAA 57.102 37.500 16.04 0.00 37.50 2.83
3177 9757 6.707711 TGCGTGTACACTTACTTAAAAACAG 58.292 36.000 23.01 4.16 0.00 3.16
3183 9763 7.369607 TCATACTTGCGTGTACACTTACTTAA 58.630 34.615 23.01 8.38 0.00 1.85
3193 9773 4.426416 TGGTGTATCATACTTGCGTGTAC 58.574 43.478 0.00 0.00 0.00 2.90
3279 9859 6.588719 AAGTATGCCTTGAAATTGCACTTA 57.411 33.333 0.00 0.00 37.92 2.24
3322 9905 9.822727 ATGAAACCCCTTAAGAAGAAAGAAATA 57.177 29.630 3.36 0.00 0.00 1.40
3323 9906 8.727100 ATGAAACCCCTTAAGAAGAAAGAAAT 57.273 30.769 3.36 0.00 0.00 2.17
3462 15303 7.284919 TGGAAGAATGAAACCCTTTAAGAAC 57.715 36.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.