Multiple sequence alignment - TraesCS1B01G156200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G156200 chr1B 100.000 3708 0 0 1 3708 263944077 263947784 0.000000e+00 6848.0
1 TraesCS1B01G156200 chr1B 98.137 322 3 2 1721 2042 667943486 667943804 3.230000e-155 558.0
2 TraesCS1B01G156200 chr1B 94.753 324 16 1 1721 2044 7690760 7691082 1.540000e-138 503.0
3 TraesCS1B01G156200 chr1B 95.283 318 14 1 1721 2038 299269465 299269149 1.540000e-138 503.0
4 TraesCS1B01G156200 chr1B 95.283 318 14 1 1721 2038 526166487 526166803 1.540000e-138 503.0
5 TraesCS1B01G156200 chr1D 94.470 1718 73 8 1 1716 190476666 190478363 0.000000e+00 2627.0
6 TraesCS1B01G156200 chr1D 94.313 1688 57 8 2048 3708 190478348 190480023 0.000000e+00 2549.0
7 TraesCS1B01G156200 chr1D 95.082 61 3 0 179 239 190476881 190476941 3.050000e-16 97.1
8 TraesCS1B01G156200 chr1A 93.547 1720 82 10 1 1716 212024424 212022730 0.000000e+00 2534.0
9 TraesCS1B01G156200 chr1A 92.070 1034 48 11 2048 3055 212022745 212021720 0.000000e+00 1424.0
10 TraesCS1B01G156200 chr1A 96.870 671 21 0 3038 3708 212019877 212019207 0.000000e+00 1123.0
11 TraesCS1B01G156200 chr2B 97.205 322 8 1 1721 2042 234356958 234357278 9.060000e-151 544.0
12 TraesCS1B01G156200 chr2B 95.912 318 10 3 1722 2038 17155486 17155171 2.550000e-141 512.0
13 TraesCS1B01G156200 chr2B 74.336 226 41 16 3441 3656 695859498 695859716 3.070000e-11 80.5
14 TraesCS1B01G156200 chr3B 95.912 318 12 1 1721 2038 151439866 151439550 7.100000e-142 514.0
15 TraesCS1B01G156200 chr3B 95.283 318 14 1 1721 2038 707951977 707951661 1.540000e-138 503.0
16 TraesCS1B01G156200 chr3B 94.969 318 15 1 1721 2038 823555141 823555457 7.150000e-137 497.0
17 TraesCS1B01G156200 chr2A 72.852 291 56 19 3379 3656 716487829 716488109 1.100000e-10 78.7
18 TraesCS1B01G156200 chr2D 73.568 227 41 15 3441 3656 578936844 578937062 6.640000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G156200 chr1B 263944077 263947784 3707 False 6848.000000 6848 100.000000 1 3708 1 chr1B.!!$F2 3707
1 TraesCS1B01G156200 chr1D 190476666 190480023 3357 False 1757.700000 2627 94.621667 1 3708 3 chr1D.!!$F1 3707
2 TraesCS1B01G156200 chr1A 212019207 212024424 5217 True 1693.666667 2534 94.162333 1 3708 3 chr1A.!!$R1 3707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 404 0.250727 GGTGTGCACATGTACCCACT 60.251 55.0 24.69 0.0 0.0 4.00 F
1744 1750 0.041090 CCAGGGGGCATTTGGTTACT 59.959 55.0 0.00 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1844 0.039527 CACAACCGGCTGGCTAAAAC 60.04 55.0 12.89 0.0 39.7 2.43 R
3152 5045 0.470456 ACACCTACCACCTCACCGAA 60.47 55.0 0.00 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.783708 AAACACCTAAACCAAACATGAGAA 57.216 33.333 0.00 0.00 0.00 2.87
44 45 5.767816 ACACCTAAACCAAACATGAGAAC 57.232 39.130 0.00 0.00 0.00 3.01
45 46 5.197451 ACACCTAAACCAAACATGAGAACA 58.803 37.500 0.00 0.00 0.00 3.18
46 47 5.833131 ACACCTAAACCAAACATGAGAACAT 59.167 36.000 0.00 0.00 37.19 2.71
67 68 5.050091 ACATGAGACGTCACATGAAAGAAAC 60.050 40.000 42.71 7.86 44.23 2.78
206 207 4.706842 ATACCTGCCAAATCTTACCGAT 57.293 40.909 0.00 0.00 0.00 4.18
227 228 5.689514 CGATAGAGCATAGGACAAGTCTTTG 59.310 44.000 0.00 0.00 38.28 2.77
241 242 5.240844 ACAAGTCTTTGTATACCTGCCAAAC 59.759 40.000 0.00 0.00 45.45 2.93
247 248 5.508280 TTGTATACCTGCCAAACCTTACT 57.492 39.130 0.00 0.00 0.00 2.24
294 295 2.126071 CTGCCAGCTGTGCATTGC 60.126 61.111 24.13 15.00 38.22 3.56
346 347 8.561738 TTTTATCTCGCTTTCATTTCCTAACT 57.438 30.769 0.00 0.00 0.00 2.24
367 368 2.243602 TTGTTTGACCGGTGTAGACC 57.756 50.000 14.63 0.00 39.14 3.85
388 389 2.591715 GTCGGCTGCTTGTGGTGT 60.592 61.111 0.00 0.00 0.00 4.16
394 395 2.035421 CTGCTTGTGGTGTGCACAT 58.965 52.632 24.69 0.00 32.91 3.21
403 404 0.250727 GGTGTGCACATGTACCCACT 60.251 55.000 24.69 0.00 0.00 4.00
422 423 2.765699 ACTGTGCCACCAAGTCATTTTT 59.234 40.909 0.00 0.00 0.00 1.94
574 576 7.227992 CAGAGAACTGTTATACTTGCTTAGC 57.772 40.000 0.00 0.00 39.11 3.09
637 639 3.324556 ACTTATTTGGTGGCAATGTGCTT 59.675 39.130 0.00 0.00 44.28 3.91
646 648 0.817654 GCAATGTGCTTACCTTCCCC 59.182 55.000 0.00 0.00 40.96 4.81
710 712 0.485099 ATCTAGGGAGATGCGGAGGT 59.515 55.000 0.00 0.00 41.12 3.85
731 733 2.939756 TCGCTGCTTGTTGTTTGTCTAA 59.060 40.909 0.00 0.00 0.00 2.10
785 787 4.148838 ACATCCTAGCTCTACCTGACATC 58.851 47.826 0.00 0.00 0.00 3.06
822 824 2.821969 CCAACTGGCAAGATAGCAAAGT 59.178 45.455 0.00 0.00 35.34 2.66
839 841 4.803613 GCAAAGTTGAACCGACTTTTGATT 59.196 37.500 10.08 0.00 43.18 2.57
846 848 8.576442 AGTTGAACCGACTTTTGATTTTCATAT 58.424 29.630 0.00 0.00 0.00 1.78
870 872 8.950208 ATTGAGTTTAGTTCTCCTGTTATAGC 57.050 34.615 0.00 0.00 0.00 2.97
947 949 6.581388 TGGGAGATGAAACTGGAAGATAAT 57.419 37.500 0.00 0.00 37.43 1.28
1335 1337 2.050144 TCAAGGCTTGAGTCACTTCCT 58.950 47.619 25.38 0.00 34.08 3.36
1357 1359 5.304101 CCTCTTGATCTGCTGGTATAGAACT 59.696 44.000 0.00 0.00 0.00 3.01
1365 1367 5.189736 TCTGCTGGTATAGAACTGAAACCAT 59.810 40.000 0.00 0.00 39.40 3.55
1368 1370 7.398829 TGCTGGTATAGAACTGAAACCATTTA 58.601 34.615 0.00 0.00 39.40 1.40
1385 1387 7.448748 ACCATTTACTGTTAACTCCAATGTC 57.551 36.000 7.22 0.00 0.00 3.06
1428 1430 6.446318 TCTGACTGCCATTGTTTTATTGAAC 58.554 36.000 0.00 0.00 0.00 3.18
1454 1456 4.820897 TCAAGATCGTCTGTTACTTGCAT 58.179 39.130 0.00 0.00 38.13 3.96
1584 1587 2.886523 TGCACTTTCAATCCCTTGTCAG 59.113 45.455 0.00 0.00 33.87 3.51
1597 1600 4.899457 TCCCTTGTCAGACTTAGTTCTCAA 59.101 41.667 1.31 0.00 0.00 3.02
1685 1691 9.331282 AGGCTACATCTCTTATTTTTGTACATC 57.669 33.333 0.00 0.00 0.00 3.06
1689 1695 8.561738 ACATCTCTTATTTTTGTACATCGGTT 57.438 30.769 0.00 0.00 0.00 4.44
1695 1701 8.185505 TCTTATTTTTGTACATCGGTTTATGGC 58.814 33.333 0.00 0.00 0.00 4.40
1700 1706 2.727123 ACATCGGTTTATGGCATCCA 57.273 45.000 1.65 0.00 38.19 3.41
1701 1707 3.228188 ACATCGGTTTATGGCATCCAT 57.772 42.857 1.65 3.63 46.99 3.41
1702 1708 2.886523 ACATCGGTTTATGGCATCCATG 59.113 45.455 1.65 8.53 44.84 3.66
1703 1709 2.727123 TCGGTTTATGGCATCCATGT 57.273 45.000 1.65 0.00 44.84 3.21
1704 1710 3.847671 TCGGTTTATGGCATCCATGTA 57.152 42.857 1.65 0.00 44.84 2.29
1705 1711 4.157849 TCGGTTTATGGCATCCATGTAA 57.842 40.909 1.65 0.00 44.84 2.41
1706 1712 3.880490 TCGGTTTATGGCATCCATGTAAC 59.120 43.478 1.65 11.24 44.84 2.50
1707 1713 3.004315 CGGTTTATGGCATCCATGTAACC 59.996 47.826 21.88 21.88 44.84 2.85
1708 1714 4.215109 GGTTTATGGCATCCATGTAACCT 58.785 43.478 23.18 0.04 45.70 3.50
1709 1715 4.037923 GGTTTATGGCATCCATGTAACCTG 59.962 45.833 23.18 0.00 45.70 4.00
1710 1716 1.696063 ATGGCATCCATGTAACCTGC 58.304 50.000 0.00 0.00 43.39 4.85
1711 1717 0.330941 TGGCATCCATGTAACCTGCA 59.669 50.000 0.00 0.00 34.56 4.41
1712 1718 1.063792 TGGCATCCATGTAACCTGCAT 60.064 47.619 0.00 0.00 34.56 3.96
1713 1719 2.174424 TGGCATCCATGTAACCTGCATA 59.826 45.455 0.00 0.00 34.56 3.14
1714 1720 2.816087 GGCATCCATGTAACCTGCATAG 59.184 50.000 0.00 0.00 34.56 2.23
1715 1721 3.480470 GCATCCATGTAACCTGCATAGT 58.520 45.455 0.00 0.00 33.13 2.12
1716 1722 3.885297 GCATCCATGTAACCTGCATAGTT 59.115 43.478 7.36 7.36 33.13 2.24
1717 1723 4.339247 GCATCCATGTAACCTGCATAGTTT 59.661 41.667 7.49 0.00 33.13 2.66
1718 1724 5.163519 GCATCCATGTAACCTGCATAGTTTT 60.164 40.000 7.49 0.00 33.13 2.43
1719 1725 6.039270 GCATCCATGTAACCTGCATAGTTTTA 59.961 38.462 7.49 0.00 33.13 1.52
1720 1726 7.642669 CATCCATGTAACCTGCATAGTTTTAG 58.357 38.462 7.49 0.00 0.00 1.85
1721 1727 6.119536 TCCATGTAACCTGCATAGTTTTAGG 58.880 40.000 7.49 5.97 36.39 2.69
1722 1728 6.069905 TCCATGTAACCTGCATAGTTTTAGGA 60.070 38.462 7.49 7.75 34.42 2.94
1723 1729 6.260936 CCATGTAACCTGCATAGTTTTAGGAG 59.739 42.308 7.49 0.00 34.42 3.69
1724 1730 5.741011 TGTAACCTGCATAGTTTTAGGAGG 58.259 41.667 7.49 0.00 34.42 4.30
1725 1731 3.283259 ACCTGCATAGTTTTAGGAGGC 57.717 47.619 0.00 0.00 34.42 4.70
1726 1732 2.092375 ACCTGCATAGTTTTAGGAGGCC 60.092 50.000 0.00 0.00 34.42 5.19
1727 1733 2.092429 CCTGCATAGTTTTAGGAGGCCA 60.092 50.000 5.01 0.00 31.91 5.36
1728 1734 3.209410 CTGCATAGTTTTAGGAGGCCAG 58.791 50.000 5.01 0.00 0.00 4.85
1729 1735 2.092429 TGCATAGTTTTAGGAGGCCAGG 60.092 50.000 5.01 0.00 0.00 4.45
1730 1736 2.749800 GCATAGTTTTAGGAGGCCAGGG 60.750 54.545 5.01 0.00 0.00 4.45
1731 1737 1.591768 TAGTTTTAGGAGGCCAGGGG 58.408 55.000 5.01 0.00 0.00 4.79
1732 1738 1.214992 AGTTTTAGGAGGCCAGGGGG 61.215 60.000 5.01 0.00 37.18 5.40
1743 1749 2.590704 CCAGGGGGCATTTGGTTAC 58.409 57.895 0.00 0.00 0.00 2.50
1744 1750 0.041090 CCAGGGGGCATTTGGTTACT 59.959 55.000 0.00 0.00 0.00 2.24
1745 1751 1.185315 CAGGGGGCATTTGGTTACTG 58.815 55.000 0.00 0.00 0.00 2.74
1746 1752 0.041090 AGGGGGCATTTGGTTACTGG 59.959 55.000 0.00 0.00 0.00 4.00
1747 1753 0.975556 GGGGGCATTTGGTTACTGGG 60.976 60.000 0.00 0.00 0.00 4.45
1748 1754 0.252057 GGGGCATTTGGTTACTGGGT 60.252 55.000 0.00 0.00 0.00 4.51
1749 1755 1.182667 GGGCATTTGGTTACTGGGTC 58.817 55.000 0.00 0.00 0.00 4.46
1750 1756 1.272480 GGGCATTTGGTTACTGGGTCT 60.272 52.381 0.00 0.00 0.00 3.85
1751 1757 1.818674 GGCATTTGGTTACTGGGTCTG 59.181 52.381 0.00 0.00 0.00 3.51
1752 1758 2.514803 GCATTTGGTTACTGGGTCTGT 58.485 47.619 0.00 0.00 0.00 3.41
1753 1759 2.488153 GCATTTGGTTACTGGGTCTGTC 59.512 50.000 0.00 0.00 0.00 3.51
1754 1760 2.943036 TTTGGTTACTGGGTCTGTCC 57.057 50.000 0.00 0.00 0.00 4.02
1755 1761 0.682852 TTGGTTACTGGGTCTGTCCG 59.317 55.000 0.00 0.00 37.00 4.79
1756 1762 1.079336 GGTTACTGGGTCTGTCCGC 60.079 63.158 0.00 0.00 37.00 5.54
1757 1763 1.542187 GGTTACTGGGTCTGTCCGCT 61.542 60.000 0.00 0.00 37.00 5.52
1758 1764 0.389948 GTTACTGGGTCTGTCCGCTG 60.390 60.000 0.00 0.00 37.00 5.18
1759 1765 1.541310 TTACTGGGTCTGTCCGCTGG 61.541 60.000 0.00 0.00 37.00 4.85
1760 1766 4.087892 CTGGGTCTGTCCGCTGGG 62.088 72.222 0.00 0.00 37.00 4.45
1761 1767 4.631740 TGGGTCTGTCCGCTGGGA 62.632 66.667 0.00 0.00 41.08 4.37
1762 1768 3.775654 GGGTCTGTCCGCTGGGAG 61.776 72.222 0.00 0.00 44.97 4.30
1763 1769 2.680352 GGTCTGTCCGCTGGGAGA 60.680 66.667 0.00 0.00 44.97 3.71
1764 1770 2.060980 GGTCTGTCCGCTGGGAGAT 61.061 63.158 0.00 0.00 44.97 2.75
1765 1771 1.142748 GTCTGTCCGCTGGGAGATG 59.857 63.158 0.00 0.00 44.97 2.90
1766 1772 2.060383 TCTGTCCGCTGGGAGATGG 61.060 63.158 0.00 0.00 44.97 3.51
1767 1773 2.284625 TGTCCGCTGGGAGATGGT 60.285 61.111 0.00 0.00 44.97 3.55
1768 1774 1.001120 TGTCCGCTGGGAGATGGTA 59.999 57.895 0.00 0.00 44.97 3.25
1769 1775 1.043116 TGTCCGCTGGGAGATGGTAG 61.043 60.000 0.00 0.00 44.97 3.18
1770 1776 2.134287 TCCGCTGGGAGATGGTAGC 61.134 63.158 0.00 0.00 37.43 3.58
1771 1777 2.136878 CCGCTGGGAGATGGTAGCT 61.137 63.158 0.00 0.00 34.13 3.32
1772 1778 1.365633 CGCTGGGAGATGGTAGCTC 59.634 63.158 0.00 0.00 34.13 4.09
1773 1779 1.365633 GCTGGGAGATGGTAGCTCG 59.634 63.158 0.00 0.00 33.19 5.03
1774 1780 2.045280 CTGGGAGATGGTAGCTCGG 58.955 63.158 0.00 0.00 33.19 4.63
1775 1781 1.457643 TGGGAGATGGTAGCTCGGG 60.458 63.158 0.00 0.00 33.19 5.14
1776 1782 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
1777 1783 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
1778 1784 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
1779 1785 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
1780 1786 2.691011 GGAGATGGTAGCTCGGGATATC 59.309 54.545 0.00 0.00 33.19 1.63
1781 1787 3.626222 GGAGATGGTAGCTCGGGATATCT 60.626 52.174 2.05 0.00 33.19 1.98
1782 1788 4.020543 GAGATGGTAGCTCGGGATATCTT 58.979 47.826 2.05 0.00 0.00 2.40
1783 1789 4.020543 AGATGGTAGCTCGGGATATCTTC 58.979 47.826 2.05 0.00 0.00 2.87
1784 1790 3.238788 TGGTAGCTCGGGATATCTTCA 57.761 47.619 2.05 0.00 0.00 3.02
1785 1791 3.572642 TGGTAGCTCGGGATATCTTCAA 58.427 45.455 2.05 0.00 0.00 2.69
1786 1792 3.321111 TGGTAGCTCGGGATATCTTCAAC 59.679 47.826 2.05 0.00 0.00 3.18
1787 1793 3.306156 GGTAGCTCGGGATATCTTCAACC 60.306 52.174 2.05 0.00 0.00 3.77
1788 1794 1.341531 AGCTCGGGATATCTTCAACCG 59.658 52.381 10.16 10.16 45.52 4.44
1789 1795 1.605712 GCTCGGGATATCTTCAACCGG 60.606 57.143 14.77 0.00 44.36 5.28
1790 1796 1.687123 CTCGGGATATCTTCAACCGGT 59.313 52.381 0.00 0.00 44.36 5.28
1791 1797 2.102588 CTCGGGATATCTTCAACCGGTT 59.897 50.000 15.86 15.86 44.36 4.44
1792 1798 2.502538 TCGGGATATCTTCAACCGGTTT 59.497 45.455 19.55 5.23 44.36 3.27
1793 1799 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
1794 1800 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
1795 1801 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
1796 1802 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
1797 1803 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
1798 1804 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
1799 1805 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
1800 1806 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
1801 1807 1.969064 CAACCGGTTTGGATGGCGA 60.969 57.895 19.55 0.00 42.00 5.54
1802 1808 1.001393 AACCGGTTTGGATGGCGAT 60.001 52.632 15.86 0.00 42.00 4.58
1803 1809 1.029947 AACCGGTTTGGATGGCGATC 61.030 55.000 15.86 0.00 42.00 3.69
1804 1810 1.451207 CCGGTTTGGATGGCGATCA 60.451 57.895 11.07 0.00 42.00 2.92
1805 1811 0.819259 CCGGTTTGGATGGCGATCAT 60.819 55.000 11.07 0.00 42.00 2.45
1806 1812 0.308684 CGGTTTGGATGGCGATCATG 59.691 55.000 11.07 0.00 35.97 3.07
1807 1813 1.392589 GGTTTGGATGGCGATCATGT 58.607 50.000 11.07 0.00 35.97 3.21
1808 1814 2.571212 GGTTTGGATGGCGATCATGTA 58.429 47.619 11.07 0.00 35.97 2.29
1809 1815 2.948979 GGTTTGGATGGCGATCATGTAA 59.051 45.455 11.07 0.00 35.97 2.41
1810 1816 3.569701 GGTTTGGATGGCGATCATGTAAT 59.430 43.478 11.07 0.00 35.97 1.89
1811 1817 4.759693 GGTTTGGATGGCGATCATGTAATA 59.240 41.667 11.07 0.00 35.97 0.98
1812 1818 5.106555 GGTTTGGATGGCGATCATGTAATAG 60.107 44.000 11.07 0.00 35.97 1.73
1813 1819 4.206477 TGGATGGCGATCATGTAATAGG 57.794 45.455 11.07 0.00 35.97 2.57
1814 1820 3.837731 TGGATGGCGATCATGTAATAGGA 59.162 43.478 11.07 0.00 35.97 2.94
1815 1821 4.471025 TGGATGGCGATCATGTAATAGGAT 59.529 41.667 11.07 0.00 35.97 3.24
1816 1822 5.660864 TGGATGGCGATCATGTAATAGGATA 59.339 40.000 11.07 0.00 35.97 2.59
1817 1823 6.183360 TGGATGGCGATCATGTAATAGGATAG 60.183 42.308 11.07 0.00 35.97 2.08
1818 1824 5.598416 TGGCGATCATGTAATAGGATAGG 57.402 43.478 0.00 0.00 28.22 2.57
1819 1825 4.141937 TGGCGATCATGTAATAGGATAGGC 60.142 45.833 0.00 0.00 44.14 3.93
1820 1826 4.141937 GGCGATCATGTAATAGGATAGGCA 60.142 45.833 0.00 0.00 43.63 4.75
1821 1827 5.453903 GGCGATCATGTAATAGGATAGGCAT 60.454 44.000 0.00 0.00 43.63 4.40
1822 1828 6.051717 GCGATCATGTAATAGGATAGGCATT 58.948 40.000 0.00 0.00 32.55 3.56
1823 1829 6.540189 GCGATCATGTAATAGGATAGGCATTT 59.460 38.462 0.00 0.00 32.55 2.32
1824 1830 7.710907 GCGATCATGTAATAGGATAGGCATTTA 59.289 37.037 0.00 0.00 32.55 1.40
1825 1831 9.254133 CGATCATGTAATAGGATAGGCATTTAG 57.746 37.037 0.00 0.00 28.22 1.85
1831 1837 8.989131 TGTAATAGGATAGGCATTTAGTATCCC 58.011 37.037 4.35 0.00 42.27 3.85
1832 1838 9.214962 GTAATAGGATAGGCATTTAGTATCCCT 57.785 37.037 4.35 0.00 42.27 4.20
1834 1840 9.975464 AATAGGATAGGCATTTAGTATCCCTAT 57.025 33.333 4.35 0.00 42.27 2.57
1839 1845 9.649316 GATAGGCATTTAGTATCCCTATCTAGT 57.351 37.037 14.59 0.00 45.60 2.57
1841 1847 8.743636 AGGCATTTAGTATCCCTATCTAGTTT 57.256 34.615 0.00 0.00 0.00 2.66
1842 1848 9.172060 AGGCATTTAGTATCCCTATCTAGTTTT 57.828 33.333 0.00 0.00 0.00 2.43
1847 1853 9.664777 TTTAGTATCCCTATCTAGTTTTAGCCA 57.335 33.333 0.00 0.00 0.00 4.75
1848 1854 7.784470 AGTATCCCTATCTAGTTTTAGCCAG 57.216 40.000 0.00 0.00 0.00 4.85
1849 1855 4.957684 TCCCTATCTAGTTTTAGCCAGC 57.042 45.455 0.00 0.00 0.00 4.85
1850 1856 3.646637 TCCCTATCTAGTTTTAGCCAGCC 59.353 47.826 0.00 0.00 0.00 4.85
1851 1857 3.555168 CCCTATCTAGTTTTAGCCAGCCG 60.555 52.174 0.00 0.00 0.00 5.52
1852 1858 2.622064 ATCTAGTTTTAGCCAGCCGG 57.378 50.000 0.00 0.00 0.00 6.13
1853 1859 1.272807 TCTAGTTTTAGCCAGCCGGT 58.727 50.000 1.90 0.00 33.28 5.28
1854 1860 1.626825 TCTAGTTTTAGCCAGCCGGTT 59.373 47.619 1.90 0.00 33.28 4.44
1855 1861 1.737793 CTAGTTTTAGCCAGCCGGTTG 59.262 52.381 11.98 11.98 33.28 3.77
1856 1862 0.179001 AGTTTTAGCCAGCCGGTTGT 60.179 50.000 17.69 1.85 33.28 3.32
1857 1863 0.039527 GTTTTAGCCAGCCGGTTGTG 60.040 55.000 17.69 9.73 33.28 3.33
1858 1864 1.175983 TTTTAGCCAGCCGGTTGTGG 61.176 55.000 17.69 15.43 36.85 4.17
1868 1874 2.453983 CCGGTTGTGGCATTTTGATT 57.546 45.000 0.00 0.00 0.00 2.57
1869 1875 2.765122 CCGGTTGTGGCATTTTGATTT 58.235 42.857 0.00 0.00 0.00 2.17
1870 1876 2.479656 CCGGTTGTGGCATTTTGATTTG 59.520 45.455 0.00 0.00 0.00 2.32
1871 1877 2.479656 CGGTTGTGGCATTTTGATTTGG 59.520 45.455 0.00 0.00 0.00 3.28
1872 1878 2.226200 GGTTGTGGCATTTTGATTTGGC 59.774 45.455 0.00 0.00 38.77 4.52
1873 1879 3.140623 GTTGTGGCATTTTGATTTGGCT 58.859 40.909 0.00 0.00 39.04 4.75
1874 1880 4.314121 GTTGTGGCATTTTGATTTGGCTA 58.686 39.130 0.00 0.00 39.04 3.93
1875 1881 4.191033 TGTGGCATTTTGATTTGGCTAG 57.809 40.909 0.00 0.00 39.04 3.42
1876 1882 3.577848 TGTGGCATTTTGATTTGGCTAGT 59.422 39.130 0.00 0.00 39.04 2.57
1877 1883 4.040217 TGTGGCATTTTGATTTGGCTAGTT 59.960 37.500 0.00 0.00 39.04 2.24
1878 1884 4.389687 GTGGCATTTTGATTTGGCTAGTTG 59.610 41.667 0.00 0.00 39.04 3.16
1879 1885 3.371898 GGCATTTTGATTTGGCTAGTTGC 59.628 43.478 0.00 0.00 41.94 4.17
1880 1886 4.248058 GCATTTTGATTTGGCTAGTTGCT 58.752 39.130 0.00 0.00 42.39 3.91
1881 1887 4.092383 GCATTTTGATTTGGCTAGTTGCTG 59.908 41.667 0.00 0.00 42.39 4.41
1882 1888 4.935352 TTTTGATTTGGCTAGTTGCTGT 57.065 36.364 0.00 0.00 42.39 4.40
1883 1889 4.935352 TTTGATTTGGCTAGTTGCTGTT 57.065 36.364 0.00 0.00 42.39 3.16
1884 1890 4.503741 TTGATTTGGCTAGTTGCTGTTC 57.496 40.909 0.00 0.00 42.39 3.18
1885 1891 2.819608 TGATTTGGCTAGTTGCTGTTCC 59.180 45.455 0.00 0.00 42.39 3.62
1886 1892 2.656947 TTTGGCTAGTTGCTGTTCCT 57.343 45.000 0.00 0.00 42.39 3.36
1887 1893 3.780804 TTTGGCTAGTTGCTGTTCCTA 57.219 42.857 0.00 0.00 42.39 2.94
1888 1894 3.334583 TTGGCTAGTTGCTGTTCCTAG 57.665 47.619 0.00 0.00 42.39 3.02
1890 1896 1.657822 GCTAGTTGCTGTTCCTAGCC 58.342 55.000 6.63 0.00 45.02 3.93
1891 1897 1.208293 GCTAGTTGCTGTTCCTAGCCT 59.792 52.381 6.63 0.00 45.02 4.58
1892 1898 2.355209 GCTAGTTGCTGTTCCTAGCCTT 60.355 50.000 6.63 0.00 45.02 4.35
1893 1899 2.959465 AGTTGCTGTTCCTAGCCTTT 57.041 45.000 0.00 0.00 43.02 3.11
1894 1900 3.229697 AGTTGCTGTTCCTAGCCTTTT 57.770 42.857 0.00 0.00 43.02 2.27
1895 1901 3.566351 AGTTGCTGTTCCTAGCCTTTTT 58.434 40.909 0.00 0.00 43.02 1.94
1919 1925 3.736530 CTCTGTGTGAGCTTTATGTGC 57.263 47.619 0.00 0.00 35.84 4.57
1920 1926 3.332919 CTCTGTGTGAGCTTTATGTGCT 58.667 45.455 0.00 0.00 44.24 4.40
1921 1927 3.743521 TCTGTGTGAGCTTTATGTGCTT 58.256 40.909 0.00 0.00 41.30 3.91
1922 1928 4.136796 TCTGTGTGAGCTTTATGTGCTTT 58.863 39.130 0.00 0.00 41.30 3.51
1923 1929 4.580167 TCTGTGTGAGCTTTATGTGCTTTT 59.420 37.500 0.00 0.00 41.30 2.27
1924 1930 4.858935 TGTGTGAGCTTTATGTGCTTTTC 58.141 39.130 0.00 0.00 41.30 2.29
1925 1931 4.580167 TGTGTGAGCTTTATGTGCTTTTCT 59.420 37.500 0.00 0.00 41.30 2.52
1926 1932 5.762711 TGTGTGAGCTTTATGTGCTTTTCTA 59.237 36.000 0.00 0.00 41.30 2.10
1927 1933 6.430925 TGTGTGAGCTTTATGTGCTTTTCTAT 59.569 34.615 0.00 0.00 41.30 1.98
1928 1934 6.744537 GTGTGAGCTTTATGTGCTTTTCTATG 59.255 38.462 0.00 0.00 41.30 2.23
1929 1935 6.654582 TGTGAGCTTTATGTGCTTTTCTATGA 59.345 34.615 0.00 0.00 41.30 2.15
1930 1936 6.963805 GTGAGCTTTATGTGCTTTTCTATGAC 59.036 38.462 0.00 0.00 41.30 3.06
1931 1937 6.881065 TGAGCTTTATGTGCTTTTCTATGACT 59.119 34.615 0.00 0.00 41.30 3.41
1932 1938 7.391554 TGAGCTTTATGTGCTTTTCTATGACTT 59.608 33.333 0.00 0.00 41.30 3.01
1933 1939 8.115490 AGCTTTATGTGCTTTTCTATGACTTT 57.885 30.769 0.00 0.00 37.52 2.66
1934 1940 8.579863 AGCTTTATGTGCTTTTCTATGACTTTT 58.420 29.630 0.00 0.00 37.52 2.27
1935 1941 8.642020 GCTTTATGTGCTTTTCTATGACTTTTG 58.358 33.333 0.00 0.00 0.00 2.44
1936 1942 9.132521 CTTTATGTGCTTTTCTATGACTTTTGG 57.867 33.333 0.00 0.00 0.00 3.28
1937 1943 6.899393 ATGTGCTTTTCTATGACTTTTGGA 57.101 33.333 0.00 0.00 0.00 3.53
1938 1944 6.317789 TGTGCTTTTCTATGACTTTTGGAG 57.682 37.500 0.00 0.00 0.00 3.86
1939 1945 6.061441 TGTGCTTTTCTATGACTTTTGGAGA 58.939 36.000 0.00 0.00 0.00 3.71
1940 1946 6.716628 TGTGCTTTTCTATGACTTTTGGAGAT 59.283 34.615 0.00 0.00 0.00 2.75
1941 1947 7.094634 TGTGCTTTTCTATGACTTTTGGAGATC 60.095 37.037 0.00 0.00 0.00 2.75
1942 1948 7.120432 GTGCTTTTCTATGACTTTTGGAGATCT 59.880 37.037 0.00 0.00 0.00 2.75
1943 1949 7.667219 TGCTTTTCTATGACTTTTGGAGATCTT 59.333 33.333 0.00 0.00 0.00 2.40
1944 1950 8.518702 GCTTTTCTATGACTTTTGGAGATCTTT 58.481 33.333 0.00 0.00 0.00 2.52
1945 1951 9.837525 CTTTTCTATGACTTTTGGAGATCTTTG 57.162 33.333 0.00 0.00 0.00 2.77
1946 1952 7.928307 TTCTATGACTTTTGGAGATCTTTGG 57.072 36.000 0.00 0.00 0.00 3.28
1947 1953 7.257790 TCTATGACTTTTGGAGATCTTTGGA 57.742 36.000 0.00 0.00 0.00 3.53
1948 1954 7.689299 TCTATGACTTTTGGAGATCTTTGGAA 58.311 34.615 0.00 0.00 0.00 3.53
1949 1955 6.581171 ATGACTTTTGGAGATCTTTGGAAC 57.419 37.500 0.00 0.00 0.00 3.62
1950 1956 4.827284 TGACTTTTGGAGATCTTTGGAACC 59.173 41.667 0.00 0.00 0.00 3.62
1951 1957 4.803452 ACTTTTGGAGATCTTTGGAACCA 58.197 39.130 0.00 0.00 0.00 3.67
1952 1958 5.397360 ACTTTTGGAGATCTTTGGAACCAT 58.603 37.500 0.00 0.00 0.00 3.55
1953 1959 5.244626 ACTTTTGGAGATCTTTGGAACCATG 59.755 40.000 0.00 0.00 0.00 3.66
1954 1960 4.387026 TTGGAGATCTTTGGAACCATGT 57.613 40.909 0.00 0.00 0.00 3.21
1955 1961 4.387026 TGGAGATCTTTGGAACCATGTT 57.613 40.909 0.00 0.00 0.00 2.71
1956 1962 4.081406 TGGAGATCTTTGGAACCATGTTG 58.919 43.478 0.00 0.00 0.00 3.33
1957 1963 3.445096 GGAGATCTTTGGAACCATGTTGG 59.555 47.826 0.00 0.00 45.02 3.77
1992 1998 7.938563 TTTTGATAATAAAATGGCCGTATGC 57.061 32.000 0.00 0.00 40.16 3.14
1993 1999 6.641169 TTGATAATAAAATGGCCGTATGCA 57.359 33.333 0.00 0.00 43.89 3.96
1994 2000 6.832520 TGATAATAAAATGGCCGTATGCAT 57.167 33.333 3.79 3.79 43.89 3.96
1995 2001 6.851609 TGATAATAAAATGGCCGTATGCATC 58.148 36.000 0.19 0.00 43.89 3.91
1996 2002 3.829886 ATAAAATGGCCGTATGCATCG 57.170 42.857 0.19 7.03 43.89 3.84
1997 2003 1.388547 AAAATGGCCGTATGCATCGT 58.611 45.000 0.19 0.00 43.89 3.73
1998 2004 1.388547 AAATGGCCGTATGCATCGTT 58.611 45.000 0.19 0.00 43.89 3.85
1999 2005 0.944386 AATGGCCGTATGCATCGTTC 59.056 50.000 0.19 2.49 43.89 3.95
2000 2006 0.106708 ATGGCCGTATGCATCGTTCT 59.893 50.000 0.19 0.00 43.89 3.01
2001 2007 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
2002 2008 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
2003 2009 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
2011 2017 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
2012 2018 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
2013 2019 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
2014 2020 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
2015 2021 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
2016 2022 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2018 2024 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
2019 2025 3.099170 ATGCAGAGGCCGGGGAAT 61.099 61.111 2.18 0.00 40.13 3.01
2020 2026 3.125376 ATGCAGAGGCCGGGGAATC 62.125 63.158 2.18 0.00 40.13 2.52
2021 2027 4.570874 GCAGAGGCCGGGGAATCC 62.571 72.222 2.18 0.00 0.00 3.01
2073 2079 5.511234 AACCTGCATAGTAACTACCTACG 57.489 43.478 0.00 0.00 0.00 3.51
2326 2346 1.192803 AACAAGACCCCTCTCCGGAC 61.193 60.000 0.00 0.00 33.16 4.79
2333 2353 2.716017 CCCTCTCCGGACTGAGCAC 61.716 68.421 13.92 0.00 33.16 4.40
2352 2372 2.749621 CACTGGCCTTTCATGAGGTTAC 59.250 50.000 3.32 0.00 39.11 2.50
2518 2538 1.599797 CCCTCGGCCTTCACGTTTT 60.600 57.895 0.00 0.00 0.00 2.43
2635 2655 1.303317 AAGGCCTGTACCCAAAGCG 60.303 57.895 5.69 0.00 0.00 4.68
2735 2764 3.833559 AAAGAAGTGGGATGGGTTGAT 57.166 42.857 0.00 0.00 0.00 2.57
2749 2778 3.134623 TGGGTTGATATCGCTTCTCATGT 59.865 43.478 0.00 0.00 0.00 3.21
2805 2834 6.806668 TTTATGTCATGTCTCTGGGTATGA 57.193 37.500 0.00 0.00 0.00 2.15
2905 2935 7.230913 GGTTAGTCATTAGCCTGTCATACTCTA 59.769 40.741 0.00 0.00 30.44 2.43
2984 3014 4.023707 GCGGTTGAATATCTTGGAAGGATG 60.024 45.833 0.00 0.00 0.00 3.51
2988 3018 7.118390 CGGTTGAATATCTTGGAAGGATGATAC 59.882 40.741 0.00 0.00 0.00 2.24
2993 3023 9.868277 GAATATCTTGGAAGGATGATACTAGTG 57.132 37.037 5.39 0.00 0.00 2.74
3062 4955 7.766219 AATTCGTACTTGTCCATACATACAC 57.234 36.000 0.00 0.00 34.97 2.90
3073 4966 8.581253 TGTCCATACATACACAGATATAGAGG 57.419 38.462 0.00 0.00 0.00 3.69
3093 4986 5.183904 AGAGGTTGTAAAGTTTGATGATGCC 59.816 40.000 0.00 0.00 0.00 4.40
3107 5000 2.107366 TGATGCCGAATCTACCACAGA 58.893 47.619 0.00 0.00 36.15 3.41
3152 5045 0.834687 TGAGGAGGTTGTAGCCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
3191 5084 1.699634 TCCCAGAAGAGGAACTTGGTG 59.300 52.381 0.00 0.00 41.55 4.17
3197 5090 1.134438 AGAGGAACTTGGTGGGGTCC 61.134 60.000 0.00 0.00 41.55 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.257267 TCTTTCATGTGACGTCTCATGT 57.743 40.909 38.82 19.76 44.03 3.21
44 45 5.178252 AGTTTCTTTCATGTGACGTCTCATG 59.822 40.000 37.12 37.12 44.63 3.07
45 46 5.300752 AGTTTCTTTCATGTGACGTCTCAT 58.699 37.500 23.65 23.65 0.00 2.90
46 47 4.693283 AGTTTCTTTCATGTGACGTCTCA 58.307 39.130 21.32 21.32 0.00 3.27
47 48 6.764877 TTAGTTTCTTTCATGTGACGTCTC 57.235 37.500 17.92 14.12 0.00 3.36
48 49 7.280205 ACTTTTAGTTTCTTTCATGTGACGTCT 59.720 33.333 17.92 0.00 0.00 4.18
49 50 7.407337 ACTTTTAGTTTCTTTCATGTGACGTC 58.593 34.615 9.11 9.11 0.00 4.34
67 68 8.630037 AGGGTCTAAATTGTTGTGAACTTTTAG 58.370 33.333 0.00 0.00 38.14 1.85
206 207 7.661536 ATACAAAGACTTGTCCTATGCTCTA 57.338 36.000 0.00 0.00 42.25 2.43
227 228 4.874396 GTCAGTAAGGTTTGGCAGGTATAC 59.126 45.833 0.00 0.00 0.00 1.47
241 242 3.701542 TGTCCTATGCTCTGTCAGTAAGG 59.298 47.826 0.00 1.79 0.00 2.69
247 248 1.208052 GGCTTGTCCTATGCTCTGTCA 59.792 52.381 0.00 0.00 0.00 3.58
270 271 1.162800 GCACAGCTGGCAGGTATAGC 61.163 60.000 20.14 18.40 37.71 2.97
301 302 4.699925 AAACAGTGGGTAAGCTAACAGA 57.300 40.909 0.00 0.00 0.00 3.41
310 311 4.901868 AGCGAGATAAAAACAGTGGGTAA 58.098 39.130 0.00 0.00 0.00 2.85
346 347 3.306919 GGGTCTACACCGGTCAAACAATA 60.307 47.826 2.59 0.00 44.91 1.90
367 368 2.693762 CCACAAGCAGCCGACATGG 61.694 63.158 0.00 0.00 42.50 3.66
388 389 3.320823 CACAGTGGGTACATGTGCA 57.679 52.632 16.11 0.00 38.05 4.57
394 395 1.636769 TTGGTGGCACAGTGGGTACA 61.637 55.000 20.82 2.18 41.80 2.90
403 404 2.499289 ACAAAAATGACTTGGTGGCACA 59.501 40.909 20.82 2.61 35.90 4.57
422 423 6.028146 TCTAGAGTGCATTAAACGGTAACA 57.972 37.500 0.00 0.00 0.00 2.41
478 480 7.754924 AGGATAACTGAACAAAATTGCAATACG 59.245 33.333 13.39 6.73 0.00 3.06
615 617 2.899256 AGCACATTGCCACCAAATAAGT 59.101 40.909 0.00 0.00 46.52 2.24
637 639 5.824542 ATGGGAAAAATAAGGGGAAGGTA 57.175 39.130 0.00 0.00 0.00 3.08
710 712 1.378531 AGACAAACAACAAGCAGCGA 58.621 45.000 0.00 0.00 0.00 4.93
731 733 7.561356 AGGAAACTGCAAAATAATAGCCTATGT 59.439 33.333 0.00 0.00 41.13 2.29
745 747 5.833131 AGGATGTAAGAAAGGAAACTGCAAA 59.167 36.000 0.00 0.00 42.68 3.68
822 824 9.190858 CAATATGAAAATCAAAAGTCGGTTCAA 57.809 29.630 0.00 0.00 0.00 2.69
839 841 9.793259 AACAGGAGAACTAAACTCAATATGAAA 57.207 29.630 0.00 0.00 36.26 2.69
846 848 7.903145 TGCTATAACAGGAGAACTAAACTCAA 58.097 34.615 0.00 0.00 36.26 3.02
870 872 4.516698 AGGAGTACAGCAACAACAAAGATG 59.483 41.667 0.00 0.00 0.00 2.90
1275 1277 3.239449 TGCTTGAGGAGTCTTTGGAGTA 58.761 45.455 0.00 0.00 0.00 2.59
1335 1337 5.893824 TCAGTTCTATACCAGCAGATCAAGA 59.106 40.000 0.00 0.00 0.00 3.02
1357 1359 7.883391 TTGGAGTTAACAGTAAATGGTTTCA 57.117 32.000 8.61 0.00 0.00 2.69
1365 1367 7.881142 CAATGGACATTGGAGTTAACAGTAAA 58.119 34.615 15.46 0.00 43.25 2.01
1368 1370 5.964958 CAATGGACATTGGAGTTAACAGT 57.035 39.130 15.46 0.00 43.25 3.55
1385 1387 8.340443 CAGTCAGATGTGATACAAATACAATGG 58.660 37.037 0.00 0.00 34.36 3.16
1428 1430 5.005203 GCAAGTAACAGACGATCTTGATCTG 59.995 44.000 8.70 10.07 44.49 2.90
1685 1691 3.004315 GGTTACATGGATGCCATAAACCG 59.996 47.826 19.02 4.07 43.15 4.44
1689 1695 3.221771 GCAGGTTACATGGATGCCATAA 58.778 45.455 0.00 0.00 43.15 1.90
1695 1701 6.455360 AAAACTATGCAGGTTACATGGATG 57.545 37.500 13.84 6.80 29.10 3.51
1700 1706 6.357367 CCTCCTAAAACTATGCAGGTTACAT 58.643 40.000 8.02 2.36 29.10 2.29
1701 1707 5.741011 CCTCCTAAAACTATGCAGGTTACA 58.259 41.667 8.02 0.37 29.10 2.41
1702 1708 4.575236 GCCTCCTAAAACTATGCAGGTTAC 59.425 45.833 8.02 0.00 29.10 2.50
1703 1709 4.384868 GGCCTCCTAAAACTATGCAGGTTA 60.385 45.833 8.02 0.00 29.10 2.85
1704 1710 3.621558 GCCTCCTAAAACTATGCAGGTT 58.378 45.455 0.00 0.00 31.05 3.50
1705 1711 2.092375 GGCCTCCTAAAACTATGCAGGT 60.092 50.000 0.00 0.00 0.00 4.00
1706 1712 2.092429 TGGCCTCCTAAAACTATGCAGG 60.092 50.000 3.32 0.00 0.00 4.85
1707 1713 3.209410 CTGGCCTCCTAAAACTATGCAG 58.791 50.000 3.32 0.00 0.00 4.41
1708 1714 2.092429 CCTGGCCTCCTAAAACTATGCA 60.092 50.000 3.32 0.00 0.00 3.96
1709 1715 2.576615 CCTGGCCTCCTAAAACTATGC 58.423 52.381 3.32 0.00 0.00 3.14
1710 1716 2.158608 CCCCTGGCCTCCTAAAACTATG 60.159 54.545 3.32 0.00 0.00 2.23
1711 1717 2.136026 CCCCTGGCCTCCTAAAACTAT 58.864 52.381 3.32 0.00 0.00 2.12
1712 1718 1.591768 CCCCTGGCCTCCTAAAACTA 58.408 55.000 3.32 0.00 0.00 2.24
1713 1719 1.214992 CCCCCTGGCCTCCTAAAACT 61.215 60.000 3.32 0.00 0.00 2.66
1714 1720 1.306633 CCCCCTGGCCTCCTAAAAC 59.693 63.158 3.32 0.00 0.00 2.43
1715 1721 3.850061 CCCCCTGGCCTCCTAAAA 58.150 61.111 3.32 0.00 0.00 1.52
1725 1731 0.041090 AGTAACCAAATGCCCCCTGG 59.959 55.000 0.00 0.00 36.24 4.45
1726 1732 1.185315 CAGTAACCAAATGCCCCCTG 58.815 55.000 0.00 0.00 0.00 4.45
1727 1733 0.041090 CCAGTAACCAAATGCCCCCT 59.959 55.000 0.00 0.00 0.00 4.79
1728 1734 0.975556 CCCAGTAACCAAATGCCCCC 60.976 60.000 0.00 0.00 0.00 5.40
1729 1735 0.252057 ACCCAGTAACCAAATGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
1730 1736 1.182667 GACCCAGTAACCAAATGCCC 58.817 55.000 0.00 0.00 0.00 5.36
1731 1737 1.818674 CAGACCCAGTAACCAAATGCC 59.181 52.381 0.00 0.00 0.00 4.40
1732 1738 2.488153 GACAGACCCAGTAACCAAATGC 59.512 50.000 0.00 0.00 0.00 3.56
1733 1739 3.081804 GGACAGACCCAGTAACCAAATG 58.918 50.000 0.00 0.00 0.00 2.32
1734 1740 2.290071 CGGACAGACCCAGTAACCAAAT 60.290 50.000 0.00 0.00 34.64 2.32
1735 1741 1.071071 CGGACAGACCCAGTAACCAAA 59.929 52.381 0.00 0.00 34.64 3.28
1736 1742 0.682852 CGGACAGACCCAGTAACCAA 59.317 55.000 0.00 0.00 34.64 3.67
1737 1743 1.823169 GCGGACAGACCCAGTAACCA 61.823 60.000 0.00 0.00 34.64 3.67
1738 1744 1.079336 GCGGACAGACCCAGTAACC 60.079 63.158 0.00 0.00 34.64 2.85
1739 1745 0.389948 CAGCGGACAGACCCAGTAAC 60.390 60.000 0.00 0.00 34.64 2.50
1740 1746 1.541310 CCAGCGGACAGACCCAGTAA 61.541 60.000 0.00 0.00 34.64 2.24
1741 1747 1.982395 CCAGCGGACAGACCCAGTA 60.982 63.158 0.00 0.00 34.64 2.74
1742 1748 3.314331 CCAGCGGACAGACCCAGT 61.314 66.667 0.00 0.00 34.64 4.00
1743 1749 4.087892 CCCAGCGGACAGACCCAG 62.088 72.222 0.00 0.00 34.64 4.45
1744 1750 4.631740 TCCCAGCGGACAGACCCA 62.632 66.667 0.00 0.00 31.13 4.51
1745 1751 3.775654 CTCCCAGCGGACAGACCC 61.776 72.222 0.00 0.00 33.32 4.46
1746 1752 2.060980 ATCTCCCAGCGGACAGACC 61.061 63.158 0.00 0.00 33.32 3.85
1747 1753 1.142748 CATCTCCCAGCGGACAGAC 59.857 63.158 0.00 0.00 33.32 3.51
1748 1754 2.060383 CCATCTCCCAGCGGACAGA 61.060 63.158 0.00 0.00 33.32 3.41
1749 1755 1.043116 TACCATCTCCCAGCGGACAG 61.043 60.000 0.00 0.00 33.32 3.51
1750 1756 1.001120 TACCATCTCCCAGCGGACA 59.999 57.895 0.00 0.00 33.32 4.02
1751 1757 1.742768 CTACCATCTCCCAGCGGAC 59.257 63.158 0.00 0.00 33.32 4.79
1752 1758 2.134287 GCTACCATCTCCCAGCGGA 61.134 63.158 0.00 0.00 36.45 5.54
1753 1759 2.093537 GAGCTACCATCTCCCAGCGG 62.094 65.000 0.00 0.00 39.04 5.52
1754 1760 1.365633 GAGCTACCATCTCCCAGCG 59.634 63.158 0.00 0.00 39.04 5.18
1755 1761 1.365633 CGAGCTACCATCTCCCAGC 59.634 63.158 0.00 0.00 0.00 4.85
1756 1762 1.467678 CCCGAGCTACCATCTCCCAG 61.468 65.000 0.00 0.00 0.00 4.45
1757 1763 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
1758 1764 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
1759 1765 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
1760 1766 3.626930 AGATATCCCGAGCTACCATCTC 58.373 50.000 0.00 0.00 0.00 2.75
1761 1767 3.748645 AGATATCCCGAGCTACCATCT 57.251 47.619 0.00 0.00 0.00 2.90
1762 1768 3.764434 TGAAGATATCCCGAGCTACCATC 59.236 47.826 0.00 0.00 0.00 3.51
1763 1769 3.779444 TGAAGATATCCCGAGCTACCAT 58.221 45.455 0.00 0.00 0.00 3.55
1764 1770 3.238788 TGAAGATATCCCGAGCTACCA 57.761 47.619 0.00 0.00 0.00 3.25
1765 1771 3.306156 GGTTGAAGATATCCCGAGCTACC 60.306 52.174 0.00 0.00 0.00 3.18
1766 1772 3.612004 CGGTTGAAGATATCCCGAGCTAC 60.612 52.174 10.76 0.00 41.08 3.58
1767 1773 2.557056 CGGTTGAAGATATCCCGAGCTA 59.443 50.000 10.76 0.00 41.08 3.32
1768 1774 1.341531 CGGTTGAAGATATCCCGAGCT 59.658 52.381 10.76 0.00 41.08 4.09
1769 1775 1.605712 CCGGTTGAAGATATCCCGAGC 60.606 57.143 16.17 9.53 41.08 5.03
1770 1776 1.687123 ACCGGTTGAAGATATCCCGAG 59.313 52.381 16.17 10.10 41.08 4.63
1771 1777 1.784358 ACCGGTTGAAGATATCCCGA 58.216 50.000 16.17 0.00 41.08 5.14
1772 1778 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
1773 1779 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
1774 1780 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
1775 1781 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
1776 1782 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
1777 1783 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
1778 1784 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
1779 1785 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
1780 1786 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
1781 1787 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
1782 1788 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
1783 1789 1.312371 ATCGCCATCCAAACCGGTTG 61.312 55.000 23.08 14.70 36.94 3.77
1784 1790 1.001393 ATCGCCATCCAAACCGGTT 60.001 52.632 15.86 15.86 35.57 4.44
1785 1791 1.451387 GATCGCCATCCAAACCGGT 60.451 57.895 0.00 0.00 35.57 5.28
1786 1792 0.819259 ATGATCGCCATCCAAACCGG 60.819 55.000 0.00 0.00 0.00 5.28
1787 1793 0.308684 CATGATCGCCATCCAAACCG 59.691 55.000 0.00 0.00 31.94 4.44
1788 1794 1.392589 ACATGATCGCCATCCAAACC 58.607 50.000 0.00 0.00 31.94 3.27
1789 1795 4.836125 ATTACATGATCGCCATCCAAAC 57.164 40.909 0.00 0.00 31.94 2.93
1790 1796 5.003160 CCTATTACATGATCGCCATCCAAA 58.997 41.667 0.00 0.00 31.94 3.28
1791 1797 4.285775 TCCTATTACATGATCGCCATCCAA 59.714 41.667 0.00 0.00 31.94 3.53
1792 1798 3.837731 TCCTATTACATGATCGCCATCCA 59.162 43.478 0.00 0.00 31.94 3.41
1793 1799 4.471904 TCCTATTACATGATCGCCATCC 57.528 45.455 0.00 0.00 31.94 3.51
1794 1800 6.219473 CCTATCCTATTACATGATCGCCATC 58.781 44.000 0.00 0.00 31.94 3.51
1795 1801 5.453903 GCCTATCCTATTACATGATCGCCAT 60.454 44.000 0.00 0.00 35.44 4.40
1796 1802 4.141937 GCCTATCCTATTACATGATCGCCA 60.142 45.833 0.00 0.00 0.00 5.69
1797 1803 4.141937 TGCCTATCCTATTACATGATCGCC 60.142 45.833 0.00 0.00 0.00 5.54
1798 1804 5.011090 TGCCTATCCTATTACATGATCGC 57.989 43.478 0.00 0.00 0.00 4.58
1799 1805 9.254133 CTAAATGCCTATCCTATTACATGATCG 57.746 37.037 0.00 0.00 0.00 3.69
1805 1811 8.989131 GGGATACTAAATGCCTATCCTATTACA 58.011 37.037 0.00 0.00 37.26 2.41
1806 1812 9.214962 AGGGATACTAAATGCCTATCCTATTAC 57.785 37.037 0.00 0.00 38.13 1.89
1808 1814 9.975464 ATAGGGATACTAAATGCCTATCCTATT 57.025 33.333 11.11 0.00 45.79 1.73
1815 1821 9.839185 AAACTAGATAGGGATACTAAATGCCTA 57.161 33.333 7.59 7.59 44.40 3.93
1816 1822 8.743636 AAACTAGATAGGGATACTAAATGCCT 57.256 34.615 0.00 3.47 42.68 4.75
1821 1827 9.664777 TGGCTAAAACTAGATAGGGATACTAAA 57.335 33.333 0.00 0.00 34.79 1.85
1822 1828 9.310449 CTGGCTAAAACTAGATAGGGATACTAA 57.690 37.037 0.00 0.00 34.79 2.24
1823 1829 7.396623 GCTGGCTAAAACTAGATAGGGATACTA 59.603 40.741 0.00 0.00 35.80 1.82
1824 1830 6.211785 GCTGGCTAAAACTAGATAGGGATACT 59.788 42.308 0.00 0.00 0.00 2.12
1825 1831 6.399743 GCTGGCTAAAACTAGATAGGGATAC 58.600 44.000 0.00 0.00 0.00 2.24
1826 1832 5.484290 GGCTGGCTAAAACTAGATAGGGATA 59.516 44.000 0.00 0.00 0.00 2.59
1827 1833 4.287326 GGCTGGCTAAAACTAGATAGGGAT 59.713 45.833 0.00 0.00 0.00 3.85
1828 1834 3.646637 GGCTGGCTAAAACTAGATAGGGA 59.353 47.826 0.00 0.00 0.00 4.20
1829 1835 3.555168 CGGCTGGCTAAAACTAGATAGGG 60.555 52.174 0.00 0.00 0.00 3.53
1830 1836 3.555168 CCGGCTGGCTAAAACTAGATAGG 60.555 52.174 0.00 0.00 0.00 2.57
1831 1837 3.069729 ACCGGCTGGCTAAAACTAGATAG 59.930 47.826 12.89 0.00 39.70 2.08
1832 1838 3.036091 ACCGGCTGGCTAAAACTAGATA 58.964 45.455 12.89 0.00 39.70 1.98
1833 1839 1.838077 ACCGGCTGGCTAAAACTAGAT 59.162 47.619 12.89 0.00 39.70 1.98
1834 1840 1.272807 ACCGGCTGGCTAAAACTAGA 58.727 50.000 12.89 0.00 39.70 2.43
1835 1841 1.737793 CAACCGGCTGGCTAAAACTAG 59.262 52.381 12.89 0.00 39.70 2.57
1836 1842 1.072648 ACAACCGGCTGGCTAAAACTA 59.927 47.619 12.89 0.00 39.70 2.24
1837 1843 0.179001 ACAACCGGCTGGCTAAAACT 60.179 50.000 12.89 0.00 39.70 2.66
1838 1844 0.039527 CACAACCGGCTGGCTAAAAC 60.040 55.000 12.89 0.00 39.70 2.43
1839 1845 1.175983 CCACAACCGGCTGGCTAAAA 61.176 55.000 12.89 0.00 39.70 1.52
1840 1846 1.602323 CCACAACCGGCTGGCTAAA 60.602 57.895 12.89 0.00 39.70 1.85
1841 1847 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
1849 1855 2.453983 AATCAAAATGCCACAACCGG 57.546 45.000 0.00 0.00 0.00 5.28
1850 1856 2.479656 CCAAATCAAAATGCCACAACCG 59.520 45.455 0.00 0.00 0.00 4.44
1851 1857 2.226200 GCCAAATCAAAATGCCACAACC 59.774 45.455 0.00 0.00 0.00 3.77
1852 1858 3.140623 AGCCAAATCAAAATGCCACAAC 58.859 40.909 0.00 0.00 0.00 3.32
1853 1859 3.488778 AGCCAAATCAAAATGCCACAA 57.511 38.095 0.00 0.00 0.00 3.33
1854 1860 3.577848 ACTAGCCAAATCAAAATGCCACA 59.422 39.130 0.00 0.00 0.00 4.17
1855 1861 4.192429 ACTAGCCAAATCAAAATGCCAC 57.808 40.909 0.00 0.00 0.00 5.01
1856 1862 4.567971 CAACTAGCCAAATCAAAATGCCA 58.432 39.130 0.00 0.00 0.00 4.92
1857 1863 3.371898 GCAACTAGCCAAATCAAAATGCC 59.628 43.478 0.00 0.00 37.23 4.40
1858 1864 4.588805 GCAACTAGCCAAATCAAAATGC 57.411 40.909 0.00 0.00 37.23 3.56
1872 1878 3.618690 AAGGCTAGGAACAGCAACTAG 57.381 47.619 0.00 0.00 43.67 2.57
1873 1879 4.367039 AAAAGGCTAGGAACAGCAACTA 57.633 40.909 0.00 0.00 43.67 2.24
1874 1880 2.959465 AAAGGCTAGGAACAGCAACT 57.041 45.000 0.00 0.00 43.67 3.16
1900 1906 3.407424 AGCACATAAAGCTCACACAGA 57.593 42.857 0.00 0.00 38.01 3.41
1901 1907 4.494350 AAAGCACATAAAGCTCACACAG 57.506 40.909 0.00 0.00 42.53 3.66
1902 1908 4.580167 AGAAAAGCACATAAAGCTCACACA 59.420 37.500 0.00 0.00 42.53 3.72
1903 1909 5.113502 AGAAAAGCACATAAAGCTCACAC 57.886 39.130 0.00 0.00 42.53 3.82
1904 1910 6.654582 TCATAGAAAAGCACATAAAGCTCACA 59.345 34.615 0.00 0.00 42.53 3.58
1905 1911 6.963805 GTCATAGAAAAGCACATAAAGCTCAC 59.036 38.462 0.00 0.00 42.53 3.51
1906 1912 6.881065 AGTCATAGAAAAGCACATAAAGCTCA 59.119 34.615 0.00 0.00 42.53 4.26
1907 1913 7.313951 AGTCATAGAAAAGCACATAAAGCTC 57.686 36.000 0.00 0.00 42.53 4.09
1908 1914 7.693969 AAGTCATAGAAAAGCACATAAAGCT 57.306 32.000 0.00 0.00 45.97 3.74
1909 1915 8.642020 CAAAAGTCATAGAAAAGCACATAAAGC 58.358 33.333 0.00 0.00 0.00 3.51
1910 1916 9.132521 CCAAAAGTCATAGAAAAGCACATAAAG 57.867 33.333 0.00 0.00 0.00 1.85
1911 1917 8.855110 TCCAAAAGTCATAGAAAAGCACATAAA 58.145 29.630 0.00 0.00 0.00 1.40
1912 1918 8.402798 TCCAAAAGTCATAGAAAAGCACATAA 57.597 30.769 0.00 0.00 0.00 1.90
1913 1919 7.882791 TCTCCAAAAGTCATAGAAAAGCACATA 59.117 33.333 0.00 0.00 0.00 2.29
1914 1920 6.716628 TCTCCAAAAGTCATAGAAAAGCACAT 59.283 34.615 0.00 0.00 0.00 3.21
1915 1921 6.061441 TCTCCAAAAGTCATAGAAAAGCACA 58.939 36.000 0.00 0.00 0.00 4.57
1916 1922 6.560253 TCTCCAAAAGTCATAGAAAAGCAC 57.440 37.500 0.00 0.00 0.00 4.40
1917 1923 7.170965 AGATCTCCAAAAGTCATAGAAAAGCA 58.829 34.615 0.00 0.00 0.00 3.91
1918 1924 7.622893 AGATCTCCAAAAGTCATAGAAAAGC 57.377 36.000 0.00 0.00 0.00 3.51
1919 1925 9.837525 CAAAGATCTCCAAAAGTCATAGAAAAG 57.162 33.333 0.00 0.00 0.00 2.27
1920 1926 8.796475 CCAAAGATCTCCAAAAGTCATAGAAAA 58.204 33.333 0.00 0.00 0.00 2.29
1921 1927 8.163408 TCCAAAGATCTCCAAAAGTCATAGAAA 58.837 33.333 0.00 0.00 0.00 2.52
1922 1928 7.689299 TCCAAAGATCTCCAAAAGTCATAGAA 58.311 34.615 0.00 0.00 0.00 2.10
1923 1929 7.257790 TCCAAAGATCTCCAAAAGTCATAGA 57.742 36.000 0.00 0.00 0.00 1.98
1924 1930 7.148171 GGTTCCAAAGATCTCCAAAAGTCATAG 60.148 40.741 0.00 0.00 0.00 2.23
1925 1931 6.659242 GGTTCCAAAGATCTCCAAAAGTCATA 59.341 38.462 0.00 0.00 0.00 2.15
1926 1932 5.478332 GGTTCCAAAGATCTCCAAAAGTCAT 59.522 40.000 0.00 0.00 0.00 3.06
1927 1933 4.827284 GGTTCCAAAGATCTCCAAAAGTCA 59.173 41.667 0.00 0.00 0.00 3.41
1928 1934 4.827284 TGGTTCCAAAGATCTCCAAAAGTC 59.173 41.667 0.00 0.00 0.00 3.01
1929 1935 4.803452 TGGTTCCAAAGATCTCCAAAAGT 58.197 39.130 0.00 0.00 0.00 2.66
1930 1936 5.244626 ACATGGTTCCAAAGATCTCCAAAAG 59.755 40.000 0.00 0.00 0.00 2.27
1931 1937 5.147032 ACATGGTTCCAAAGATCTCCAAAA 58.853 37.500 0.00 0.00 0.00 2.44
1932 1938 4.739793 ACATGGTTCCAAAGATCTCCAAA 58.260 39.130 0.00 0.00 0.00 3.28
1933 1939 4.387026 ACATGGTTCCAAAGATCTCCAA 57.613 40.909 0.00 0.00 0.00 3.53
1934 1940 4.081406 CAACATGGTTCCAAAGATCTCCA 58.919 43.478 0.00 0.00 0.00 3.86
1935 1941 3.445096 CCAACATGGTTCCAAAGATCTCC 59.555 47.826 0.00 0.00 31.35 3.71
1936 1942 4.708726 CCAACATGGTTCCAAAGATCTC 57.291 45.455 0.00 0.00 31.35 2.75
1966 1972 9.632807 GCATACGGCCATTTTATTATCAAAATA 57.367 29.630 2.24 0.00 36.26 1.40
1967 1973 8.147058 TGCATACGGCCATTTTATTATCAAAAT 58.853 29.630 2.24 0.00 43.89 1.82
1968 1974 7.492524 TGCATACGGCCATTTTATTATCAAAA 58.507 30.769 2.24 0.00 43.89 2.44
1969 1975 7.043961 TGCATACGGCCATTTTATTATCAAA 57.956 32.000 2.24 0.00 43.89 2.69
1970 1976 6.641169 TGCATACGGCCATTTTATTATCAA 57.359 33.333 2.24 0.00 43.89 2.57
1971 1977 6.403092 CGATGCATACGGCCATTTTATTATCA 60.403 38.462 2.24 0.00 43.89 2.15
1972 1978 5.965334 CGATGCATACGGCCATTTTATTATC 59.035 40.000 2.24 0.00 43.89 1.75
1973 1979 5.414454 ACGATGCATACGGCCATTTTATTAT 59.586 36.000 18.34 0.00 43.89 1.28
1974 1980 4.757657 ACGATGCATACGGCCATTTTATTA 59.242 37.500 18.34 0.00 43.89 0.98
1975 1981 3.568007 ACGATGCATACGGCCATTTTATT 59.432 39.130 18.34 0.00 43.89 1.40
1976 1982 3.146066 ACGATGCATACGGCCATTTTAT 58.854 40.909 18.34 0.00 43.89 1.40
1977 1983 2.566913 ACGATGCATACGGCCATTTTA 58.433 42.857 18.34 0.00 43.89 1.52
1978 1984 1.388547 ACGATGCATACGGCCATTTT 58.611 45.000 18.34 0.00 43.89 1.82
1979 1985 1.333619 GAACGATGCATACGGCCATTT 59.666 47.619 18.34 7.07 43.89 2.32
1980 1986 0.944386 GAACGATGCATACGGCCATT 59.056 50.000 18.34 7.35 43.89 3.16
1981 1987 0.106708 AGAACGATGCATACGGCCAT 59.893 50.000 18.34 0.00 43.89 4.40
1982 1988 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
1983 1989 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
1984 1990 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
1993 1999 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
1994 2000 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
1995 2001 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
1996 2002 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
1997 2003 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
1998 2004 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
1999 2005 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2001 2007 3.125376 ATTCCCCGGCCTCTGCATC 62.125 63.158 0.00 0.00 40.13 3.91
2002 2008 3.099170 ATTCCCCGGCCTCTGCAT 61.099 61.111 0.00 0.00 40.13 3.96
2003 2009 3.797353 GATTCCCCGGCCTCTGCA 61.797 66.667 0.00 0.00 40.13 4.41
2004 2010 4.570874 GGATTCCCCGGCCTCTGC 62.571 72.222 0.00 0.00 0.00 4.26
2005 2011 3.878667 GGGATTCCCCGGCCTCTG 61.879 72.222 11.02 0.00 44.02 3.35
2043 2049 8.953313 GGTAGTTACTATGCAGGTTACATTTTT 58.047 33.333 12.11 0.00 0.00 1.94
2044 2050 8.326529 AGGTAGTTACTATGCAGGTTACATTTT 58.673 33.333 12.11 0.00 0.00 1.82
2045 2051 7.858498 AGGTAGTTACTATGCAGGTTACATTT 58.142 34.615 12.11 0.00 0.00 2.32
2046 2052 7.433537 AGGTAGTTACTATGCAGGTTACATT 57.566 36.000 12.11 0.00 0.00 2.71
2073 2079 3.758755 TCTGCCATGTCAGATACCATC 57.241 47.619 1.46 0.00 38.11 3.51
2136 2142 4.878397 CGCTACAGAAAGATTTGGAATCCT 59.122 41.667 0.00 0.00 0.00 3.24
2137 2143 4.636206 ACGCTACAGAAAGATTTGGAATCC 59.364 41.667 0.00 0.00 0.00 3.01
2138 2144 5.563842 CACGCTACAGAAAGATTTGGAATC 58.436 41.667 0.00 0.00 0.00 2.52
2139 2145 4.142600 GCACGCTACAGAAAGATTTGGAAT 60.143 41.667 0.00 0.00 0.00 3.01
2140 2146 3.188460 GCACGCTACAGAAAGATTTGGAA 59.812 43.478 0.00 0.00 0.00 3.53
2326 2346 0.809385 CATGAAAGGCCAGTGCTCAG 59.191 55.000 5.01 0.00 37.74 3.35
2333 2353 3.274288 GAGTAACCTCATGAAAGGCCAG 58.726 50.000 5.01 0.00 40.34 4.85
2352 2372 7.724490 TGAGGGTAATCATGATAGGTATGAG 57.276 40.000 9.04 0.00 37.91 2.90
2411 2431 7.593875 TGAAAATTCAGTGGTTTTCAAACAG 57.406 32.000 23.26 0.00 45.85 3.16
2473 2493 0.112412 TTGGAGCCTTTGGGGTTCTC 59.888 55.000 0.00 0.00 44.22 2.87
2518 2538 0.732880 GCTTCACGTCGAGCAGCTTA 60.733 55.000 13.30 0.00 0.00 3.09
2635 2655 1.846712 AAACTCTGGGAGAGGCTGCC 61.847 60.000 11.65 11.65 46.45 4.85
2730 2759 5.284864 TGAGACATGAGAAGCGATATCAAC 58.715 41.667 0.00 0.00 31.99 3.18
2735 2764 4.823989 TGAGATGAGACATGAGAAGCGATA 59.176 41.667 0.00 0.00 0.00 2.92
2775 2804 7.935755 ACCCAGAGACATGACATAAATGATAAG 59.064 37.037 0.00 0.00 0.00 1.73
2835 2865 7.284034 ACCATGATTATCCAAGATGACAAAGAC 59.716 37.037 0.00 0.00 0.00 3.01
2837 2867 7.283807 TGACCATGATTATCCAAGATGACAAAG 59.716 37.037 0.00 0.00 0.00 2.77
2839 2869 6.661777 TGACCATGATTATCCAAGATGACAA 58.338 36.000 0.00 0.00 0.00 3.18
2905 2935 1.271379 ACTTTGGTCCTTATGCGCAGT 60.271 47.619 18.32 6.92 0.00 4.40
2984 3014 8.784043 AGACACCAATTTTGAAACACTAGTATC 58.216 33.333 0.00 0.00 0.00 2.24
2988 3018 5.687285 GCAGACACCAATTTTGAAACACTAG 59.313 40.000 0.00 0.00 0.00 2.57
2990 3020 4.160252 AGCAGACACCAATTTTGAAACACT 59.840 37.500 0.00 0.00 0.00 3.55
2991 3021 4.432712 AGCAGACACCAATTTTGAAACAC 58.567 39.130 0.00 0.00 0.00 3.32
2993 3023 6.922957 TGATAAGCAGACACCAATTTTGAAAC 59.077 34.615 0.00 0.00 0.00 2.78
3073 4966 5.041951 TCGGCATCATCAAACTTTACAAC 57.958 39.130 0.00 0.00 0.00 3.32
3093 4986 2.541178 GCTACGGTCTGTGGTAGATTCG 60.541 54.545 2.60 0.00 38.69 3.34
3152 5045 0.470456 ACACCTACCACCTCACCGAA 60.470 55.000 0.00 0.00 0.00 4.30
3218 5111 4.908687 ACGCTCACCTGCAACGCA 62.909 61.111 0.00 0.00 36.92 5.24
3219 5112 4.077188 GACGCTCACCTGCAACGC 62.077 66.667 0.00 0.00 0.00 4.84
3220 5113 2.661537 TGACGCTCACCTGCAACG 60.662 61.111 0.00 0.00 0.00 4.10
3388 5281 3.452786 CGGCGCTGGAGAAGGAGA 61.453 66.667 8.83 0.00 0.00 3.71
3536 5429 2.437359 ATCCAGAAGCTGCACGGC 60.437 61.111 1.02 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.