Multiple sequence alignment - TraesCS1B01G155100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G155100 chr1B 100.000 4278 0 0 1 4278 262063966 262068243 0.000000e+00 7901.0
1 TraesCS1B01G155100 chr1B 97.887 142 3 0 394 535 523222881 523223022 3.300000e-61 246.0
2 TraesCS1B01G155100 chr1B 95.364 151 7 0 385 535 306403084 306402934 1.540000e-59 241.0
3 TraesCS1B01G155100 chr1B 94.118 51 1 2 64 112 572678780 572678730 4.590000e-10 76.8
4 TraesCS1B01G155100 chr1D 96.434 1851 56 5 615 2461 174114341 174112497 0.000000e+00 3044.0
5 TraesCS1B01G155100 chr1D 92.975 1153 29 12 2519 3626 174112498 174111353 0.000000e+00 1633.0
6 TraesCS1B01G155100 chr1D 93.566 373 23 1 3907 4278 174110982 174110610 4.830000e-154 555.0
7 TraesCS1B01G155100 chr1D 89.247 279 19 6 103 370 414928277 414927999 5.300000e-89 339.0
8 TraesCS1B01G155100 chr1D 95.812 191 7 1 3623 3812 174111215 174111025 1.490000e-79 307.0
9 TraesCS1B01G155100 chr1D 92.381 105 4 2 3809 3909 473539221 473539117 3.450000e-31 147.0
10 TraesCS1B01G155100 chr1D 95.455 66 3 0 531 596 471123464 471123529 5.850000e-19 106.0
11 TraesCS1B01G155100 chr1D 95.385 65 3 0 531 595 28012285 28012349 2.100000e-18 104.0
12 TraesCS1B01G155100 chr1D 96.667 60 2 0 5 64 212378747 212378688 2.720000e-17 100.0
13 TraesCS1B01G155100 chr1D 96.610 59 2 0 6 64 492948129 492948071 9.790000e-17 99.0
14 TraesCS1B01G155100 chr1D 97.826 46 1 0 64 109 63428326 63428281 3.550000e-11 80.5
15 TraesCS1B01G155100 chr1A 95.719 1822 55 8 651 2461 213256042 213254233 0.000000e+00 2911.0
16 TraesCS1B01G155100 chr1A 93.066 1197 31 10 2519 3669 213254234 213253044 0.000000e+00 1703.0
17 TraesCS1B01G155100 chr1A 95.455 374 15 2 3907 4278 213252745 213252372 2.850000e-166 595.0
18 TraesCS1B01G155100 chr1A 95.960 99 2 1 3668 3764 213252884 213252786 4.430000e-35 159.0
19 TraesCS1B01G155100 chr7D 88.141 312 30 4 61 369 471866891 471867198 8.740000e-97 364.0
20 TraesCS1B01G155100 chr7D 93.089 246 15 1 129 372 209496604 209496849 4.070000e-95 359.0
21 TraesCS1B01G155100 chr7D 94.118 85 1 3 23 104 24495073 24495156 4.490000e-25 126.0
22 TraesCS1B01G155100 chr7D 91.781 73 2 3 2457 2526 95064815 95064744 9.790000e-17 99.0
23 TraesCS1B01G155100 chr7D 90.411 73 3 3 2457 2526 95064746 95064817 4.550000e-15 93.5
24 TraesCS1B01G155100 chr5B 93.443 244 14 1 129 370 633283715 633283958 1.130000e-95 361.0
25 TraesCS1B01G155100 chr5B 97.297 148 4 0 388 535 183153504 183153651 7.100000e-63 252.0
26 TraesCS1B01G155100 chr5B 93.137 102 3 2 3808 3905 671343383 671343282 3.450000e-31 147.0
27 TraesCS1B01G155100 chr5B 88.235 119 10 2 3802 3916 36231716 36231598 5.770000e-29 139.0
28 TraesCS1B01G155100 chr5B 96.552 58 2 0 5 62 687809772 687809715 3.520000e-16 97.1
29 TraesCS1B01G155100 chr5D 93.004 243 15 1 130 370 549921515 549921273 1.890000e-93 353.0
30 TraesCS1B01G155100 chr5D 92.000 250 18 1 125 372 484121307 484121556 2.450000e-92 350.0
31 TraesCS1B01G155100 chr5D 90.909 110 6 2 3803 3908 231925943 231925834 1.240000e-30 145.0
32 TraesCS1B01G155100 chr5D 89.565 115 6 4 3810 3920 500862547 500862435 1.600000e-29 141.0
33 TraesCS1B01G155100 chr3B 93.004 243 15 1 130 370 411604991 411605233 1.890000e-93 353.0
34 TraesCS1B01G155100 chr3B 96.026 151 6 0 385 535 342288808 342288658 3.300000e-61 246.0
35 TraesCS1B01G155100 chr3B 95.364 151 7 0 385 535 427096799 427096949 1.540000e-59 241.0
36 TraesCS1B01G155100 chr3B 92.381 105 3 3 3805 3904 5951325 5951429 1.240000e-30 145.0
37 TraesCS1B01G155100 chr3B 92.308 104 4 2 3803 3902 164032692 164032589 1.240000e-30 145.0
38 TraesCS1B01G155100 chr3B 92.537 67 4 1 2458 2523 768672124 768672190 1.270000e-15 95.3
39 TraesCS1B01G155100 chr3B 97.826 46 1 0 63 108 54302585 54302630 3.550000e-11 80.5
40 TraesCS1B01G155100 chr4A 89.630 270 21 5 108 372 599731780 599731513 1.910000e-88 337.0
41 TraesCS1B01G155100 chr4A 80.400 250 39 6 3038 3281 694762067 694761822 9.450000e-42 182.0
42 TraesCS1B01G155100 chr4A 95.455 66 2 1 533 597 608085844 608085909 2.100000e-18 104.0
43 TraesCS1B01G155100 chr4A 96.667 60 2 0 5 64 635878727 635878668 2.720000e-17 100.0
44 TraesCS1B01G155100 chr4D 88.889 279 21 4 107 375 149660094 149659816 6.850000e-88 335.0
45 TraesCS1B01G155100 chr4D 89.286 140 14 1 394 533 447984094 447983956 1.580000e-39 174.0
46 TraesCS1B01G155100 chr4D 90.654 107 10 0 392 498 50082292 50082186 4.460000e-30 143.0
47 TraesCS1B01G155100 chr6B 98.601 143 2 0 393 535 194036783 194036641 1.970000e-63 254.0
48 TraesCS1B01G155100 chr6B 87.500 88 4 7 2456 2537 135867653 135867567 1.270000e-15 95.3
49 TraesCS1B01G155100 chr7A 97.241 145 4 0 391 535 430841197 430841053 3.300000e-61 246.0
50 TraesCS1B01G155100 chr7A 94.030 67 2 1 2460 2524 735744296 735744230 2.720000e-17 100.0
51 TraesCS1B01G155100 chr7A 94.030 67 2 1 2460 2524 735777193 735777127 2.720000e-17 100.0
52 TraesCS1B01G155100 chr2B 97.902 143 2 1 393 535 173889726 173889867 3.300000e-61 246.0
53 TraesCS1B01G155100 chr2B 93.269 104 3 2 3803 3902 127747516 127747413 2.660000e-32 150.0
54 TraesCS1B01G155100 chr2B 81.176 170 32 0 1361 1530 391523628 391523797 2.070000e-28 137.0
55 TraesCS1B01G155100 chr2B 81.013 158 30 0 1376 1533 391493408 391493251 4.490000e-25 126.0
56 TraesCS1B01G155100 chr2B 95.161 62 2 1 2 62 254692212 254692273 3.520000e-16 97.1
57 TraesCS1B01G155100 chr2B 92.063 63 5 0 531 593 275893226 275893288 5.890000e-14 89.8
58 TraesCS1B01G155100 chr5A 96.000 150 4 2 387 535 697753182 697753330 4.270000e-60 243.0
59 TraesCS1B01G155100 chr5A 94.118 51 1 2 64 112 390558182 390558132 4.590000e-10 76.8
60 TraesCS1B01G155100 chr4B 92.453 106 4 2 3806 3907 538218850 538218745 9.580000e-32 148.0
61 TraesCS1B01G155100 chr4B 96.552 58 2 0 5 62 30369977 30370034 3.520000e-16 97.1
62 TraesCS1B01G155100 chr4B 91.304 69 4 1 2457 2523 387353320 387353252 4.550000e-15 93.5
63 TraesCS1B01G155100 chr2A 77.091 275 52 9 1260 1530 406997157 406997424 9.580000e-32 148.0
64 TraesCS1B01G155100 chr2A 77.091 275 52 9 1260 1530 407125654 407125921 9.580000e-32 148.0
65 TraesCS1B01G155100 chr2A 96.552 58 2 0 5 62 69386040 69385983 3.520000e-16 97.1
66 TraesCS1B01G155100 chr2A 95.082 61 3 0 533 593 766711952 766711892 3.520000e-16 97.1
67 TraesCS1B01G155100 chr2A 92.308 65 5 0 531 595 724498503 724498439 4.550000e-15 93.5
68 TraesCS1B01G155100 chr2A 92.453 53 2 2 64 114 360776512 360776460 1.650000e-09 75.0
69 TraesCS1B01G155100 chr2D 79.208 202 38 4 1329 1530 323561648 323561845 2.070000e-28 137.0
70 TraesCS1B01G155100 chr2D 96.923 65 2 0 531 595 570965542 570965606 4.520000e-20 110.0
71 TraesCS1B01G155100 chr3D 94.030 67 4 0 531 597 40324720 40324786 7.570000e-18 102.0
72 TraesCS1B01G155100 chr3D 88.312 77 5 4 2460 2532 474998257 474998181 5.890000e-14 89.8
73 TraesCS1B01G155100 chr3D 82.524 103 4 1 6 108 31774490 31774578 1.280000e-10 78.7
74 TraesCS1B01G155100 chr3D 87.097 62 6 1 64 123 923066 923005 7.680000e-08 69.4
75 TraesCS1B01G155100 chrUn 95.312 64 2 1 2457 2519 422881447 422881510 2.720000e-17 100.0
76 TraesCS1B01G155100 chr6D 95.000 60 3 0 5 64 97902319 97902378 1.270000e-15 95.3
77 TraesCS1B01G155100 chr6D 92.424 66 4 1 531 596 24215359 24215295 4.550000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G155100 chr1B 262063966 262068243 4277 False 7901.00 7901 100.00000 1 4278 1 chr1B.!!$F1 4277
1 TraesCS1B01G155100 chr1D 174110610 174114341 3731 True 1384.75 3044 94.69675 615 4278 4 chr1D.!!$R6 3663
2 TraesCS1B01G155100 chr1A 213252372 213256042 3670 True 1342.00 2911 95.05000 651 4278 4 chr1A.!!$R1 3627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 640 0.474184 ACCAGTGGTGAACCTTCCAG 59.526 55.0 15.86 0.0 32.98 3.86 F
2070 2087 0.899720 GACTGAATGGGGTGGTCGTA 59.100 55.0 0.00 0.0 0.00 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 2412 0.036952 CGTGCTGAGGACTGAACCAT 60.037 55.0 1.91 0.0 0.0 3.55 R
3883 4250 0.037975 GTACTCGCTCCGTCCCAAAA 60.038 55.0 0.00 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.718801 ACTAATACTCCCTCTGTCAGAGA 57.281 43.478 28.19 10.63 45.07 3.10
23 24 6.080969 ACTAATACTCCCTCTGTCAGAGAA 57.919 41.667 28.19 15.83 45.07 2.87
24 25 6.678547 ACTAATACTCCCTCTGTCAGAGAAT 58.321 40.000 28.19 13.86 45.07 2.40
25 26 7.817440 ACTAATACTCCCTCTGTCAGAGAATA 58.183 38.462 28.19 15.31 45.07 1.75
26 27 8.452868 ACTAATACTCCCTCTGTCAGAGAATAT 58.547 37.037 28.19 16.59 45.07 1.28
27 28 9.967451 CTAATACTCCCTCTGTCAGAGAATATA 57.033 37.037 28.19 15.91 45.07 0.86
29 30 8.877864 ATACTCCCTCTGTCAGAGAATATAAG 57.122 38.462 28.19 17.11 45.07 1.73
30 31 6.916909 ACTCCCTCTGTCAGAGAATATAAGA 58.083 40.000 28.19 12.73 45.07 2.10
31 32 7.358263 ACTCCCTCTGTCAGAGAATATAAGAA 58.642 38.462 28.19 0.00 45.07 2.52
32 33 7.286775 ACTCCCTCTGTCAGAGAATATAAGAAC 59.713 40.741 28.19 0.00 45.07 3.01
33 34 6.263392 TCCCTCTGTCAGAGAATATAAGAACG 59.737 42.308 28.19 8.94 45.07 3.95
34 35 6.039941 CCCTCTGTCAGAGAATATAAGAACGT 59.960 42.308 28.19 0.00 45.07 3.99
35 36 7.416890 CCCTCTGTCAGAGAATATAAGAACGTT 60.417 40.741 28.19 0.00 45.07 3.99
36 37 7.976734 CCTCTGTCAGAGAATATAAGAACGTTT 59.023 37.037 28.19 0.00 45.07 3.60
37 38 9.360093 CTCTGTCAGAGAATATAAGAACGTTTT 57.640 33.333 23.29 0.00 45.07 2.43
38 39 9.706691 TCTGTCAGAGAATATAAGAACGTTTTT 57.293 29.630 9.22 9.22 0.00 1.94
39 40 9.746711 CTGTCAGAGAATATAAGAACGTTTTTG 57.253 33.333 13.87 0.00 0.00 2.44
40 41 9.483916 TGTCAGAGAATATAAGAACGTTTTTGA 57.516 29.630 13.87 2.81 0.00 2.69
41 42 9.742552 GTCAGAGAATATAAGAACGTTTTTGAC 57.257 33.333 13.87 6.55 0.00 3.18
42 43 9.483916 TCAGAGAATATAAGAACGTTTTTGACA 57.516 29.630 13.87 0.01 0.00 3.58
43 44 9.530129 CAGAGAATATAAGAACGTTTTTGACAC 57.470 33.333 13.87 2.84 0.00 3.67
44 45 9.490379 AGAGAATATAAGAACGTTTTTGACACT 57.510 29.630 13.87 6.97 0.00 3.55
48 49 9.769093 AATATAAGAACGTTTTTGACACTATGC 57.231 29.630 13.87 0.00 0.00 3.14
49 50 5.751243 AAGAACGTTTTTGACACTATGCT 57.249 34.783 0.46 0.00 0.00 3.79
50 51 6.854496 AAGAACGTTTTTGACACTATGCTA 57.146 33.333 0.46 0.00 0.00 3.49
51 52 6.467723 AGAACGTTTTTGACACTATGCTAG 57.532 37.500 0.46 0.00 0.00 3.42
52 53 5.989777 AGAACGTTTTTGACACTATGCTAGT 59.010 36.000 0.46 0.00 40.28 2.57
68 69 9.720769 ACTATGCTAGTGTTAAAAACATAGTGT 57.279 29.630 10.92 0.00 44.13 3.55
99 100 6.373186 GTTCTTATATTTTGGAACGGAGGG 57.627 41.667 0.00 0.00 0.00 4.30
100 101 5.961398 TCTTATATTTTGGAACGGAGGGA 57.039 39.130 0.00 0.00 0.00 4.20
101 102 5.925509 TCTTATATTTTGGAACGGAGGGAG 58.074 41.667 0.00 0.00 0.00 4.30
102 103 5.427481 TCTTATATTTTGGAACGGAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
103 104 6.612456 TCTTATATTTTGGAACGGAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
104 105 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
105 106 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
106 107 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
107 108 3.393426 TTGGAACGGAGGGAGTAGTAT 57.607 47.619 0.00 0.00 0.00 2.12
108 109 4.524802 TTGGAACGGAGGGAGTAGTATA 57.475 45.455 0.00 0.00 0.00 1.47
109 110 4.524802 TGGAACGGAGGGAGTAGTATAA 57.475 45.455 0.00 0.00 0.00 0.98
110 111 4.467769 TGGAACGGAGGGAGTAGTATAAG 58.532 47.826 0.00 0.00 0.00 1.73
111 112 4.166725 TGGAACGGAGGGAGTAGTATAAGA 59.833 45.833 0.00 0.00 0.00 2.10
112 113 4.518590 GGAACGGAGGGAGTAGTATAAGAC 59.481 50.000 0.00 0.00 0.00 3.01
113 114 5.375773 GAACGGAGGGAGTAGTATAAGACT 58.624 45.833 0.00 0.00 42.69 3.24
114 115 6.465035 GGAACGGAGGGAGTAGTATAAGACTA 60.465 46.154 0.00 0.00 39.81 2.59
115 116 6.112927 ACGGAGGGAGTAGTATAAGACTAG 57.887 45.833 0.00 0.00 41.47 2.57
116 117 4.937015 CGGAGGGAGTAGTATAAGACTAGC 59.063 50.000 0.00 0.00 41.47 3.42
117 118 5.255687 GGAGGGAGTAGTATAAGACTAGCC 58.744 50.000 0.00 0.00 41.47 3.93
118 119 5.222089 GGAGGGAGTAGTATAAGACTAGCCA 60.222 48.000 0.00 0.00 41.47 4.75
119 120 5.633117 AGGGAGTAGTATAAGACTAGCCAC 58.367 45.833 0.00 0.00 41.47 5.01
120 121 5.133999 AGGGAGTAGTATAAGACTAGCCACA 59.866 44.000 0.00 0.00 41.47 4.17
121 122 5.832060 GGGAGTAGTATAAGACTAGCCACAA 59.168 44.000 0.00 0.00 41.47 3.33
122 123 6.494146 GGGAGTAGTATAAGACTAGCCACAAT 59.506 42.308 0.00 0.00 41.47 2.71
123 124 7.015389 GGGAGTAGTATAAGACTAGCCACAATT 59.985 40.741 0.00 0.00 41.47 2.32
124 125 9.075678 GGAGTAGTATAAGACTAGCCACAATTA 57.924 37.037 0.00 0.00 41.47 1.40
126 127 9.643735 AGTAGTATAAGACTAGCCACAATTAGT 57.356 33.333 0.00 0.00 41.47 2.24
132 133 7.849804 AAGACTAGCCACAATTAGTAACATG 57.150 36.000 0.00 0.00 30.58 3.21
133 134 6.947464 AGACTAGCCACAATTAGTAACATGT 58.053 36.000 0.00 0.00 30.58 3.21
134 135 7.394816 AGACTAGCCACAATTAGTAACATGTT 58.605 34.615 16.68 16.68 30.58 2.71
135 136 8.537016 AGACTAGCCACAATTAGTAACATGTTA 58.463 33.333 14.35 14.35 30.58 2.41
136 137 8.488651 ACTAGCCACAATTAGTAACATGTTAC 57.511 34.615 32.39 32.39 44.22 2.50
154 155 9.917887 ACATGTTACTACTCTATGTTACTACCT 57.082 33.333 0.00 0.00 0.00 3.08
163 164 8.466617 ACTCTATGTTACTACCTCTACAATGG 57.533 38.462 0.00 0.00 0.00 3.16
164 165 8.280084 ACTCTATGTTACTACCTCTACAATGGA 58.720 37.037 0.00 0.00 0.00 3.41
165 166 8.693120 TCTATGTTACTACCTCTACAATGGAG 57.307 38.462 0.00 0.00 0.00 3.86
166 167 8.280084 TCTATGTTACTACCTCTACAATGGAGT 58.720 37.037 0.00 0.00 0.00 3.85
167 168 9.570468 CTATGTTACTACCTCTACAATGGAGTA 57.430 37.037 0.00 0.00 0.00 2.59
168 169 8.834004 ATGTTACTACCTCTACAATGGAGTAA 57.166 34.615 0.00 0.00 0.00 2.24
169 170 8.834004 TGTTACTACCTCTACAATGGAGTAAT 57.166 34.615 0.00 0.00 33.31 1.89
170 171 9.925545 TGTTACTACCTCTACAATGGAGTAATA 57.074 33.333 0.00 0.00 33.31 0.98
177 178 9.381038 ACCTCTACAATGGAGTAATATATGTGT 57.619 33.333 0.00 0.00 0.00 3.72
178 179 9.645059 CCTCTACAATGGAGTAATATATGTGTG 57.355 37.037 0.00 0.00 0.00 3.82
179 180 9.645059 CTCTACAATGGAGTAATATATGTGTGG 57.355 37.037 0.00 0.00 0.00 4.17
180 181 9.154632 TCTACAATGGAGTAATATATGTGTGGT 57.845 33.333 0.00 0.00 0.00 4.16
183 184 9.555727 ACAATGGAGTAATATATGTGTGGTAAC 57.444 33.333 0.00 0.00 0.00 2.50
199 200 5.528043 TGGTAACATGCAACACTTCATTT 57.472 34.783 0.00 0.00 46.17 2.32
200 201 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
201 202 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
202 203 7.665690 TGGTAACATGCAACACTTCATTTATT 58.334 30.769 0.00 0.00 46.17 1.40
203 204 8.797438 TGGTAACATGCAACACTTCATTTATTA 58.203 29.630 0.00 0.00 46.17 0.98
204 205 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
205 206 9.289303 GTAACATGCAACACTTCATTTATTAGG 57.711 33.333 0.00 0.00 0.00 2.69
206 207 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
207 208 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
208 209 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
209 210 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
210 211 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
211 212 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
212 213 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
222 223 9.883142 ATTTATTAGGCTATAGACTCATCTTGC 57.117 33.333 12.64 0.00 36.29 4.01
223 224 5.730296 TTAGGCTATAGACTCATCTTGCC 57.270 43.478 12.64 0.00 41.26 4.52
224 225 3.855668 AGGCTATAGACTCATCTTGCCT 58.144 45.455 0.83 0.00 43.78 4.75
225 226 4.230455 AGGCTATAGACTCATCTTGCCTT 58.770 43.478 0.83 0.00 45.01 4.35
226 227 4.040217 AGGCTATAGACTCATCTTGCCTTG 59.960 45.833 0.83 0.00 45.01 3.61
227 228 4.039730 GGCTATAGACTCATCTTGCCTTGA 59.960 45.833 3.21 0.00 39.50 3.02
228 229 5.279910 GGCTATAGACTCATCTTGCCTTGAT 60.280 44.000 3.21 0.00 39.50 2.57
229 230 6.071108 GGCTATAGACTCATCTTGCCTTGATA 60.071 42.308 3.21 0.00 39.50 2.15
230 231 7.364585 GGCTATAGACTCATCTTGCCTTGATAT 60.365 40.741 3.21 0.00 39.50 1.63
231 232 7.492020 GCTATAGACTCATCTTGCCTTGATATG 59.508 40.741 3.21 0.00 36.29 1.78
232 233 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
233 234 5.366460 AGACTCATCTTGCCTTGATATGTG 58.634 41.667 0.00 0.00 0.00 3.21
234 235 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
235 236 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
236 237 5.101648 TCATCTTGCCTTGATATGTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
237 238 5.687780 TCATCTTGCCTTGATATGTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
238 239 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
239 240 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
240 241 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
241 242 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
242 243 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
243 244 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
244 245 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
245 246 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
246 247 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
247 248 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
248 249 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
249 250 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
255 256 8.803397 TGTGTGATGTTACTCATACTAGTAGT 57.197 34.615 8.85 8.14 37.92 2.73
256 257 9.895138 TGTGTGATGTTACTCATACTAGTAGTA 57.105 33.333 12.38 12.38 37.92 1.82
278 279 8.888579 AGTAACTAGTTATGTTATCACATGCC 57.111 34.615 18.03 0.98 43.92 4.40
279 280 8.705594 AGTAACTAGTTATGTTATCACATGCCT 58.294 33.333 18.03 3.19 43.92 4.75
280 281 8.979574 GTAACTAGTTATGTTATCACATGCCTC 58.020 37.037 18.03 0.00 43.92 4.70
281 282 7.366847 ACTAGTTATGTTATCACATGCCTCT 57.633 36.000 2.68 0.00 43.92 3.69
282 283 7.437748 ACTAGTTATGTTATCACATGCCTCTC 58.562 38.462 2.68 0.00 43.92 3.20
283 284 6.491714 AGTTATGTTATCACATGCCTCTCT 57.508 37.500 2.68 0.00 43.92 3.10
284 285 6.893583 AGTTATGTTATCACATGCCTCTCTT 58.106 36.000 2.68 0.00 43.92 2.85
285 286 7.341805 AGTTATGTTATCACATGCCTCTCTTT 58.658 34.615 2.68 0.00 43.92 2.52
286 287 7.497249 AGTTATGTTATCACATGCCTCTCTTTC 59.503 37.037 2.68 0.00 43.92 2.62
287 288 5.426689 TGTTATCACATGCCTCTCTTTCT 57.573 39.130 0.00 0.00 0.00 2.52
288 289 5.809001 TGTTATCACATGCCTCTCTTTCTT 58.191 37.500 0.00 0.00 0.00 2.52
289 290 5.877012 TGTTATCACATGCCTCTCTTTCTTC 59.123 40.000 0.00 0.00 0.00 2.87
290 291 4.564782 ATCACATGCCTCTCTTTCTTCA 57.435 40.909 0.00 0.00 0.00 3.02
291 292 4.564782 TCACATGCCTCTCTTTCTTCAT 57.435 40.909 0.00 0.00 0.00 2.57
292 293 4.914983 TCACATGCCTCTCTTTCTTCATT 58.085 39.130 0.00 0.00 0.00 2.57
293 294 5.319453 TCACATGCCTCTCTTTCTTCATTT 58.681 37.500 0.00 0.00 0.00 2.32
294 295 6.475504 TCACATGCCTCTCTTTCTTCATTTA 58.524 36.000 0.00 0.00 0.00 1.40
295 296 7.114754 TCACATGCCTCTCTTTCTTCATTTAT 58.885 34.615 0.00 0.00 0.00 1.40
296 297 7.613022 TCACATGCCTCTCTTTCTTCATTTATT 59.387 33.333 0.00 0.00 0.00 1.40
297 298 8.896744 CACATGCCTCTCTTTCTTCATTTATTA 58.103 33.333 0.00 0.00 0.00 0.98
298 299 8.897752 ACATGCCTCTCTTTCTTCATTTATTAC 58.102 33.333 0.00 0.00 0.00 1.89
299 300 9.118300 CATGCCTCTCTTTCTTCATTTATTACT 57.882 33.333 0.00 0.00 0.00 2.24
300 301 9.692325 ATGCCTCTCTTTCTTCATTTATTACTT 57.308 29.630 0.00 0.00 0.00 2.24
301 302 8.950210 TGCCTCTCTTTCTTCATTTATTACTTG 58.050 33.333 0.00 0.00 0.00 3.16
302 303 7.912773 GCCTCTCTTTCTTCATTTATTACTTGC 59.087 37.037 0.00 0.00 0.00 4.01
303 304 8.401709 CCTCTCTTTCTTCATTTATTACTTGCC 58.598 37.037 0.00 0.00 0.00 4.52
304 305 8.862325 TCTCTTTCTTCATTTATTACTTGCCA 57.138 30.769 0.00 0.00 0.00 4.92
305 306 8.730680 TCTCTTTCTTCATTTATTACTTGCCAC 58.269 33.333 0.00 0.00 0.00 5.01
306 307 8.402798 TCTTTCTTCATTTATTACTTGCCACA 57.597 30.769 0.00 0.00 0.00 4.17
307 308 9.023962 TCTTTCTTCATTTATTACTTGCCACAT 57.976 29.630 0.00 0.00 0.00 3.21
308 309 9.294030 CTTTCTTCATTTATTACTTGCCACATC 57.706 33.333 0.00 0.00 0.00 3.06
309 310 7.936496 TCTTCATTTATTACTTGCCACATCA 57.064 32.000 0.00 0.00 0.00 3.07
310 311 8.523915 TCTTCATTTATTACTTGCCACATCAT 57.476 30.769 0.00 0.00 0.00 2.45
311 312 8.970020 TCTTCATTTATTACTTGCCACATCATT 58.030 29.630 0.00 0.00 0.00 2.57
312 313 9.590451 CTTCATTTATTACTTGCCACATCATTT 57.410 29.630 0.00 0.00 0.00 2.32
363 364 8.561738 ACTATTTATGTTACTTTCACTGTGGG 57.438 34.615 8.11 1.76 0.00 4.61
364 365 8.161425 ACTATTTATGTTACTTTCACTGTGGGT 58.839 33.333 8.11 7.45 0.00 4.51
365 366 9.661563 CTATTTATGTTACTTTCACTGTGGGTA 57.338 33.333 8.11 6.54 0.00 3.69
366 367 7.972832 TTTATGTTACTTTCACTGTGGGTAG 57.027 36.000 8.11 5.69 0.00 3.18
367 368 5.562298 ATGTTACTTTCACTGTGGGTAGT 57.438 39.130 8.11 10.87 0.00 2.73
368 369 4.952460 TGTTACTTTCACTGTGGGTAGTC 58.048 43.478 8.11 7.15 0.00 2.59
369 370 4.652421 TGTTACTTTCACTGTGGGTAGTCT 59.348 41.667 8.11 0.00 0.00 3.24
370 371 5.834742 TGTTACTTTCACTGTGGGTAGTCTA 59.165 40.000 8.11 0.00 0.00 2.59
371 372 6.324512 TGTTACTTTCACTGTGGGTAGTCTAA 59.675 38.462 8.11 0.00 0.00 2.10
372 373 5.881923 ACTTTCACTGTGGGTAGTCTAAA 57.118 39.130 8.11 0.00 0.00 1.85
373 374 6.243216 ACTTTCACTGTGGGTAGTCTAAAA 57.757 37.500 8.11 0.00 0.00 1.52
374 375 6.655930 ACTTTCACTGTGGGTAGTCTAAAAA 58.344 36.000 8.11 0.00 0.00 1.94
398 399 8.908172 AAAAGCGTTTAGATGTACTAGTACTC 57.092 34.615 28.56 22.51 37.00 2.59
399 400 6.616774 AGCGTTTAGATGTACTAGTACTCC 57.383 41.667 28.56 20.59 37.00 3.85
400 401 5.530543 AGCGTTTAGATGTACTAGTACTCCC 59.469 44.000 28.56 18.56 37.00 4.30
401 402 5.530543 GCGTTTAGATGTACTAGTACTCCCT 59.469 44.000 28.56 23.04 37.00 4.20
402 403 6.039159 GCGTTTAGATGTACTAGTACTCCCTT 59.961 42.308 28.56 14.76 37.00 3.95
403 404 7.638134 CGTTTAGATGTACTAGTACTCCCTTC 58.362 42.308 28.56 18.09 37.00 3.46
404 405 7.281774 CGTTTAGATGTACTAGTACTCCCTTCA 59.718 40.741 28.56 11.24 37.00 3.02
405 406 9.134055 GTTTAGATGTACTAGTACTCCCTTCAT 57.866 37.037 28.56 15.04 37.00 2.57
406 407 9.710818 TTTAGATGTACTAGTACTCCCTTCATT 57.289 33.333 28.56 11.61 37.00 2.57
407 408 9.710818 TTAGATGTACTAGTACTCCCTTCATTT 57.289 33.333 28.56 12.95 37.00 2.32
408 409 8.611051 AGATGTACTAGTACTCCCTTCATTTT 57.389 34.615 28.56 6.95 37.00 1.82
409 410 9.047947 AGATGTACTAGTACTCCCTTCATTTTT 57.952 33.333 28.56 6.29 37.00 1.94
419 420 9.983804 GTACTCCCTTCATTTTTATTTAGTTCG 57.016 33.333 0.00 0.00 0.00 3.95
420 421 7.535997 ACTCCCTTCATTTTTATTTAGTTCGC 58.464 34.615 0.00 0.00 0.00 4.70
421 422 7.175990 ACTCCCTTCATTTTTATTTAGTTCGCA 59.824 33.333 0.00 0.00 0.00 5.10
422 423 8.062065 TCCCTTCATTTTTATTTAGTTCGCAT 57.938 30.769 0.00 0.00 0.00 4.73
423 424 9.179909 TCCCTTCATTTTTATTTAGTTCGCATA 57.820 29.630 0.00 0.00 0.00 3.14
424 425 9.965824 CCCTTCATTTTTATTTAGTTCGCATAT 57.034 29.630 0.00 0.00 0.00 1.78
433 434 9.944663 TTTATTTAGTTCGCATATTAGCTTTGG 57.055 29.630 0.00 0.00 0.00 3.28
434 435 6.995511 TTTAGTTCGCATATTAGCTTTGGT 57.004 33.333 0.00 0.00 0.00 3.67
435 436 6.598753 TTAGTTCGCATATTAGCTTTGGTC 57.401 37.500 0.00 0.00 0.00 4.02
436 437 4.513442 AGTTCGCATATTAGCTTTGGTCA 58.487 39.130 0.00 0.00 0.00 4.02
437 438 4.941263 AGTTCGCATATTAGCTTTGGTCAA 59.059 37.500 0.00 0.00 0.00 3.18
438 439 5.414454 AGTTCGCATATTAGCTTTGGTCAAA 59.586 36.000 0.00 0.00 0.00 2.69
453 454 8.527567 CTTTGGTCAAAGTCAAGTTTTACAAA 57.472 30.769 13.58 0.00 42.02 2.83
454 455 7.876896 TTGGTCAAAGTCAAGTTTTACAAAC 57.123 32.000 0.00 0.00 0.00 2.93
455 456 7.222000 TGGTCAAAGTCAAGTTTTACAAACT 57.778 32.000 0.00 0.00 0.00 2.66
456 457 7.662897 TGGTCAAAGTCAAGTTTTACAAACTT 58.337 30.769 8.50 8.50 40.80 2.66
457 458 8.145122 TGGTCAAAGTCAAGTTTTACAAACTTT 58.855 29.630 11.14 0.00 38.32 2.66
461 462 8.528917 AAAGTCAAGTTTTACAAACTTTGACC 57.471 30.769 23.38 14.76 38.32 4.02
462 463 7.222000 AGTCAAGTTTTACAAACTTTGACCA 57.778 32.000 23.38 6.08 38.32 4.02
463 464 7.662897 AGTCAAGTTTTACAAACTTTGACCAA 58.337 30.769 23.38 0.00 38.32 3.67
464 465 7.812669 AGTCAAGTTTTACAAACTTTGACCAAG 59.187 33.333 23.38 10.97 38.32 3.61
570 571 9.868277 AACTTCAGTCAACTCTAATATGAAGAG 57.132 33.333 16.44 11.91 42.92 2.85
588 589 8.857694 ATGAAGAGTAAATAAAAACGAAGGGA 57.142 30.769 0.00 0.00 0.00 4.20
589 590 8.319143 TGAAGAGTAAATAAAAACGAAGGGAG 57.681 34.615 0.00 0.00 0.00 4.30
590 591 7.935210 TGAAGAGTAAATAAAAACGAAGGGAGT 59.065 33.333 0.00 0.00 0.00 3.85
591 592 9.428097 GAAGAGTAAATAAAAACGAAGGGAGTA 57.572 33.333 0.00 0.00 0.00 2.59
592 593 8.768957 AGAGTAAATAAAAACGAAGGGAGTAC 57.231 34.615 0.00 0.00 0.00 2.73
593 594 8.370182 AGAGTAAATAAAAACGAAGGGAGTACA 58.630 33.333 0.00 0.00 0.00 2.90
594 595 9.159364 GAGTAAATAAAAACGAAGGGAGTACAT 57.841 33.333 0.00 0.00 0.00 2.29
595 596 8.943002 AGTAAATAAAAACGAAGGGAGTACATG 58.057 33.333 0.00 0.00 0.00 3.21
596 597 5.813080 ATAAAAACGAAGGGAGTACATGC 57.187 39.130 0.00 0.00 0.00 4.06
597 598 1.722011 AAACGAAGGGAGTACATGCG 58.278 50.000 0.00 0.00 0.00 4.73
598 599 0.892755 AACGAAGGGAGTACATGCGA 59.107 50.000 0.00 0.00 0.00 5.10
599 600 1.112113 ACGAAGGGAGTACATGCGAT 58.888 50.000 0.00 0.00 0.00 4.58
600 601 1.480954 ACGAAGGGAGTACATGCGATT 59.519 47.619 0.00 0.00 0.00 3.34
601 602 2.128035 CGAAGGGAGTACATGCGATTC 58.872 52.381 0.00 0.00 0.00 2.52
602 603 2.128035 GAAGGGAGTACATGCGATTCG 58.872 52.381 0.62 0.62 0.00 3.34
603 604 1.112113 AGGGAGTACATGCGATTCGT 58.888 50.000 8.03 0.00 0.00 3.85
604 605 1.202417 AGGGAGTACATGCGATTCGTG 60.202 52.381 8.03 1.53 37.70 4.35
605 606 1.202371 GGGAGTACATGCGATTCGTGA 60.202 52.381 8.03 0.00 35.66 4.35
606 607 2.545952 GGGAGTACATGCGATTCGTGAT 60.546 50.000 8.03 0.00 35.66 3.06
607 608 2.726760 GGAGTACATGCGATTCGTGATC 59.273 50.000 8.03 0.00 35.66 2.92
608 609 2.726760 GAGTACATGCGATTCGTGATCC 59.273 50.000 8.03 0.00 35.66 3.36
609 610 2.362397 AGTACATGCGATTCGTGATCCT 59.638 45.455 8.03 0.00 35.66 3.24
610 611 1.575244 ACATGCGATTCGTGATCCTG 58.425 50.000 8.03 0.00 35.66 3.86
611 612 1.134699 ACATGCGATTCGTGATCCTGT 60.135 47.619 8.03 0.00 35.66 4.00
612 613 1.259770 CATGCGATTCGTGATCCTGTG 59.740 52.381 8.03 0.00 33.49 3.66
613 614 1.083806 TGCGATTCGTGATCCTGTGC 61.084 55.000 8.03 0.00 0.00 4.57
623 624 1.632920 TGATCCTGTGCCATACAACCA 59.367 47.619 0.00 0.00 39.20 3.67
639 640 0.474184 ACCAGTGGTGAACCTTCCAG 59.526 55.000 15.86 0.00 32.98 3.86
641 642 1.597742 CAGTGGTGAACCTTCCAGTG 58.402 55.000 0.37 4.93 44.92 3.66
642 643 1.134098 CAGTGGTGAACCTTCCAGTGT 60.134 52.381 9.92 0.00 45.08 3.55
650 651 5.244626 GGTGAACCTTCCAGTGTTAGTAGTA 59.755 44.000 0.00 0.00 0.00 1.82
651 652 6.070938 GGTGAACCTTCCAGTGTTAGTAGTAT 60.071 42.308 0.00 0.00 0.00 2.12
652 653 7.034397 GTGAACCTTCCAGTGTTAGTAGTATC 58.966 42.308 0.00 0.00 0.00 2.24
657 662 8.657712 ACCTTCCAGTGTTAGTAGTATCTTTTT 58.342 33.333 0.00 0.00 0.00 1.94
724 729 3.857854 GCATCCGCACTCGCACAG 61.858 66.667 0.00 0.00 38.40 3.66
1324 1329 4.856801 CGCCATCCAAGGACCCCG 62.857 72.222 0.00 0.00 0.00 5.73
1664 1671 4.503910 TGAAGTGGACAATATCGGAACAG 58.496 43.478 0.00 0.00 0.00 3.16
1767 1776 2.189594 TGCACTGAACCTTGAGGATG 57.810 50.000 3.59 0.00 38.94 3.51
1768 1777 1.271543 TGCACTGAACCTTGAGGATGG 60.272 52.381 3.59 0.00 38.94 3.51
1795 1804 7.573968 AAACATATTCTTTAGGATCAGTGCC 57.426 36.000 0.00 0.00 0.00 5.01
1817 1826 6.597280 TGCCTTGTGAGCAACTTTTTATTTTT 59.403 30.769 0.00 0.00 37.28 1.94
1860 1869 1.369625 GTTGCGAATCCGGAGACATT 58.630 50.000 11.34 0.00 37.45 2.71
1944 1961 6.621316 TTTATGTGTGTGTGTCGGTTTAAT 57.379 33.333 0.00 0.00 0.00 1.40
1947 1964 6.811253 ATGTGTGTGTGTCGGTTTAATATT 57.189 33.333 0.00 0.00 0.00 1.28
2013 2030 5.060427 TGCACCCAGTATATAATTTGCCT 57.940 39.130 5.99 0.00 0.00 4.75
2070 2087 0.899720 GACTGAATGGGGTGGTCGTA 59.100 55.000 0.00 0.00 0.00 3.43
2100 2117 2.610219 TTCAAATGAACCATGACGCG 57.390 45.000 3.53 3.53 0.00 6.01
2123 2140 5.001267 CGTTGAGAAATTTCACGTAAATCGC 59.999 40.000 19.99 4.05 44.19 4.58
2160 2177 6.533367 TCACAAGCAAGTTAATTTCACAAACC 59.467 34.615 0.00 0.00 0.00 3.27
2353 2370 6.183360 TGGATCATTACTTCTAGGCTTGTACC 60.183 42.308 0.00 0.00 0.00 3.34
2390 2407 3.248446 TACCACCGCTCAACCTGGC 62.248 63.158 0.00 0.00 0.00 4.85
2395 2412 1.003839 CCGCTCAACCTGGCTTGTA 60.004 57.895 0.00 0.00 0.00 2.41
2408 2425 2.027192 TGGCTTGTATGGTTCAGTCCTC 60.027 50.000 0.00 0.00 0.00 3.71
2452 2469 2.271497 GCTGGCTGTGAGGAGCAT 59.729 61.111 0.00 0.00 41.08 3.79
2459 2476 2.224719 GGCTGTGAGGAGCATGGATTAT 60.225 50.000 0.00 0.00 41.08 1.28
2460 2477 3.008375 GGCTGTGAGGAGCATGGATTATA 59.992 47.826 0.00 0.00 41.08 0.98
2461 2478 3.999663 GCTGTGAGGAGCATGGATTATAC 59.000 47.826 0.00 0.00 38.95 1.47
2462 2479 4.262808 GCTGTGAGGAGCATGGATTATACT 60.263 45.833 0.00 0.00 38.95 2.12
2463 2480 5.474578 TGTGAGGAGCATGGATTATACTC 57.525 43.478 0.00 0.00 0.00 2.59
2464 2481 4.284490 TGTGAGGAGCATGGATTATACTCC 59.716 45.833 2.15 2.15 46.03 3.85
2465 2482 3.840666 TGAGGAGCATGGATTATACTCCC 59.159 47.826 6.66 3.48 46.61 4.30
2466 2483 4.100373 GAGGAGCATGGATTATACTCCCT 58.900 47.826 6.66 0.00 46.61 4.20
2467 2484 4.100373 AGGAGCATGGATTATACTCCCTC 58.900 47.826 6.66 6.12 46.61 4.30
2468 2485 3.198853 GGAGCATGGATTATACTCCCTCC 59.801 52.174 13.55 13.55 41.69 4.30
2469 2486 2.834549 AGCATGGATTATACTCCCTCCG 59.165 50.000 6.66 0.00 34.12 4.63
2470 2487 2.567615 GCATGGATTATACTCCCTCCGT 59.432 50.000 6.66 0.00 34.12 4.69
2471 2488 3.368531 GCATGGATTATACTCCCTCCGTC 60.369 52.174 6.66 0.00 34.12 4.79
2472 2489 2.885616 TGGATTATACTCCCTCCGTCC 58.114 52.381 6.66 0.00 34.12 4.79
2473 2490 2.177734 GGATTATACTCCCTCCGTCCC 58.822 57.143 0.00 0.00 0.00 4.46
2474 2491 2.492196 GGATTATACTCCCTCCGTCCCA 60.492 54.545 0.00 0.00 0.00 4.37
2475 2492 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2476 2493 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2477 2494 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2478 2495 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2479 2496 0.328258 ACTCCCTCCGTCCCAAAATG 59.672 55.000 0.00 0.00 0.00 2.32
2480 2497 0.618458 CTCCCTCCGTCCCAAAATGA 59.382 55.000 0.00 0.00 0.00 2.57
2481 2498 0.618458 TCCCTCCGTCCCAAAATGAG 59.382 55.000 0.00 0.00 0.00 2.90
2482 2499 0.328258 CCCTCCGTCCCAAAATGAGT 59.672 55.000 0.00 0.00 0.00 3.41
2483 2500 1.453155 CCTCCGTCCCAAAATGAGTG 58.547 55.000 0.00 0.00 0.00 3.51
2484 2501 1.271379 CCTCCGTCCCAAAATGAGTGT 60.271 52.381 0.00 0.00 0.00 3.55
2485 2502 2.076863 CTCCGTCCCAAAATGAGTGTC 58.923 52.381 0.00 0.00 0.00 3.67
2486 2503 1.697432 TCCGTCCCAAAATGAGTGTCT 59.303 47.619 0.00 0.00 0.00 3.41
2487 2504 2.076863 CCGTCCCAAAATGAGTGTCTC 58.923 52.381 0.00 0.00 0.00 3.36
2488 2505 2.549992 CCGTCCCAAAATGAGTGTCTCA 60.550 50.000 1.92 1.92 44.99 3.27
2489 2506 3.138304 CGTCCCAAAATGAGTGTCTCAA 58.862 45.455 3.58 0.00 44.04 3.02
2490 2507 3.058914 CGTCCCAAAATGAGTGTCTCAAC 60.059 47.826 3.58 0.00 44.04 3.18
2491 2508 3.882888 GTCCCAAAATGAGTGTCTCAACA 59.117 43.478 3.58 0.00 44.04 3.33
2492 2509 4.338118 GTCCCAAAATGAGTGTCTCAACAA 59.662 41.667 3.58 0.00 44.04 2.83
2493 2510 4.580167 TCCCAAAATGAGTGTCTCAACAAG 59.420 41.667 3.58 0.00 44.04 3.16
2494 2511 4.580167 CCCAAAATGAGTGTCTCAACAAGA 59.420 41.667 3.58 0.00 44.04 3.02
2507 2524 6.633500 TCTCAACAAGACACTTATTTTGGG 57.367 37.500 0.00 0.00 0.00 4.12
2508 2525 6.361433 TCTCAACAAGACACTTATTTTGGGA 58.639 36.000 0.00 0.00 0.00 4.37
2509 2526 6.262273 TCTCAACAAGACACTTATTTTGGGAC 59.738 38.462 0.00 0.00 0.00 4.46
2510 2527 5.008217 TCAACAAGACACTTATTTTGGGACG 59.992 40.000 0.00 0.00 0.00 4.79
2511 2528 3.818773 ACAAGACACTTATTTTGGGACGG 59.181 43.478 0.00 0.00 0.00 4.79
2512 2529 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2513 2530 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2514 2531 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2515 2532 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2516 2533 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2517 2534 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2555 2572 0.874175 TCCTGCGATAATTGCGGACG 60.874 55.000 2.82 0.00 41.30 4.79
2560 2577 1.854434 GCGATAATTGCGGACGTTTGG 60.854 52.381 0.00 0.00 0.00 3.28
2663 2680 9.860898 AAAATCAAATAGCATTTACTGTCTTCC 57.139 29.630 0.00 0.00 0.00 3.46
2664 2681 7.573968 ATCAAATAGCATTTACTGTCTTCCC 57.426 36.000 0.00 0.00 0.00 3.97
2700 2717 6.305693 AGTTCAAACTGACTGCACTATTTC 57.694 37.500 0.00 0.00 37.98 2.17
2737 2755 0.737219 GCATGAGAGGTGATGGCAAC 59.263 55.000 0.00 0.00 0.00 4.17
2758 2776 6.810182 GCAACAATCAAATAGCATTCACTCTT 59.190 34.615 0.00 0.00 0.00 2.85
2759 2777 7.330208 GCAACAATCAAATAGCATTCACTCTTT 59.670 33.333 0.00 0.00 0.00 2.52
2760 2778 9.199982 CAACAATCAAATAGCATTCACTCTTTT 57.800 29.630 0.00 0.00 0.00 2.27
2761 2779 8.976986 ACAATCAAATAGCATTCACTCTTTTC 57.023 30.769 0.00 0.00 0.00 2.29
2762 2780 8.800332 ACAATCAAATAGCATTCACTCTTTTCT 58.200 29.630 0.00 0.00 0.00 2.52
2763 2781 9.635520 CAATCAAATAGCATTCACTCTTTTCTT 57.364 29.630 0.00 0.00 0.00 2.52
2901 2919 4.097741 TGTGTCAATTATGCCCATACTTGC 59.902 41.667 11.38 8.52 35.31 4.01
2977 2995 7.825761 TCTTCTCATGCTTTCTGATTATGTTGA 59.174 33.333 0.00 0.00 0.00 3.18
3032 3050 3.195610 TCACTGACCGGCCATATATGATC 59.804 47.826 14.54 5.47 0.00 2.92
3527 3589 6.207221 TGTGAGCAATGAACTGTTTGATGTAT 59.793 34.615 0.00 0.00 0.00 2.29
3603 3665 1.165284 TGCTGTGCAAAGCGTCATGA 61.165 50.000 23.62 2.01 46.65 3.07
3820 4187 5.095145 GGGATATTTTATACCCCTCCGTC 57.905 47.826 0.00 0.00 36.65 4.79
3821 4188 4.080695 GGGATATTTTATACCCCTCCGTCC 60.081 50.000 0.00 0.00 36.65 4.79
3822 4189 4.080695 GGATATTTTATACCCCTCCGTCCC 60.081 50.000 0.00 0.00 0.00 4.46
3825 4192 2.267160 TTATACCCCTCCGTCCCAAA 57.733 50.000 0.00 0.00 0.00 3.28
3827 4194 1.603634 ATACCCCTCCGTCCCAAAAT 58.396 50.000 0.00 0.00 0.00 1.82
3829 4196 1.374572 ACCCCTCCGTCCCAAAATAA 58.625 50.000 0.00 0.00 0.00 1.40
3830 4197 1.283905 ACCCCTCCGTCCCAAAATAAG 59.716 52.381 0.00 0.00 0.00 1.73
3831 4198 1.283905 CCCCTCCGTCCCAAAATAAGT 59.716 52.381 0.00 0.00 0.00 2.24
3832 4199 2.365582 CCCTCCGTCCCAAAATAAGTG 58.634 52.381 0.00 0.00 0.00 3.16
3833 4200 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3834 4201 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3836 4203 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3837 4204 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3839 4206 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
3840 4207 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
3841 4208 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
3843 4210 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3848 4215 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
3850 4217 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
3852 4219 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
3853 4220 7.659652 AGTGTCTTGAGCTTAGTACAAATTC 57.340 36.000 0.00 0.00 0.00 2.17
3854 4221 7.217200 AGTGTCTTGAGCTTAGTACAAATTCA 58.783 34.615 0.00 0.00 0.00 2.57
3855 4222 7.880195 AGTGTCTTGAGCTTAGTACAAATTCAT 59.120 33.333 0.00 0.00 0.00 2.57
3856 4223 9.151471 GTGTCTTGAGCTTAGTACAAATTCATA 57.849 33.333 0.00 0.00 0.00 2.15
3857 4224 9.151471 TGTCTTGAGCTTAGTACAAATTCATAC 57.849 33.333 0.00 0.00 0.00 2.39
3858 4225 9.372369 GTCTTGAGCTTAGTACAAATTCATACT 57.628 33.333 0.00 6.76 35.76 2.12
3863 4230 9.187455 GAGCTTAGTACAAATTCATACTAGAGC 57.813 37.037 19.64 19.64 37.74 4.09
3864 4231 8.919145 AGCTTAGTACAAATTCATACTAGAGCT 58.081 33.333 21.56 21.56 39.80 4.09
3879 4246 6.746745 ACTAGAGCTAGTAAGTTGAGACAC 57.253 41.667 8.35 0.00 43.98 3.67
3880 4247 6.478129 ACTAGAGCTAGTAAGTTGAGACACT 58.522 40.000 8.35 0.00 43.98 3.55
3881 4248 6.943718 ACTAGAGCTAGTAAGTTGAGACACTT 59.056 38.462 8.35 0.00 43.98 3.16
3882 4249 8.102047 ACTAGAGCTAGTAAGTTGAGACACTTA 58.898 37.037 8.35 0.00 43.98 2.24
3883 4250 7.948034 AGAGCTAGTAAGTTGAGACACTTAT 57.052 36.000 0.00 0.00 40.55 1.73
3884 4251 8.356000 AGAGCTAGTAAGTTGAGACACTTATT 57.644 34.615 0.00 0.00 40.55 1.40
3885 4252 8.808092 AGAGCTAGTAAGTTGAGACACTTATTT 58.192 33.333 0.00 0.00 40.55 1.40
3886 4253 9.425577 GAGCTAGTAAGTTGAGACACTTATTTT 57.574 33.333 0.00 0.00 40.55 1.82
3887 4254 9.209175 AGCTAGTAAGTTGAGACACTTATTTTG 57.791 33.333 0.00 0.00 40.55 2.44
3888 4255 8.443937 GCTAGTAAGTTGAGACACTTATTTTGG 58.556 37.037 0.00 0.00 40.55 3.28
3889 4256 7.745620 AGTAAGTTGAGACACTTATTTTGGG 57.254 36.000 0.00 0.00 40.55 4.12
3890 4257 7.514721 AGTAAGTTGAGACACTTATTTTGGGA 58.485 34.615 0.00 0.00 40.55 4.37
3891 4258 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3892 4259 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3893 4260 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3894 4261 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3895 4262 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3896 4263 2.418976 GACACTTATTTTGGGACGGAGC 59.581 50.000 0.00 0.00 0.00 4.70
3897 4264 1.396996 CACTTATTTTGGGACGGAGCG 59.603 52.381 0.00 0.00 0.00 5.03
3898 4265 1.276989 ACTTATTTTGGGACGGAGCGA 59.723 47.619 0.00 0.00 0.00 4.93
3899 4266 1.933853 CTTATTTTGGGACGGAGCGAG 59.066 52.381 0.00 0.00 0.00 5.03
3900 4267 0.899720 TATTTTGGGACGGAGCGAGT 59.100 50.000 0.00 0.00 0.00 4.18
3901 4268 0.899720 ATTTTGGGACGGAGCGAGTA 59.100 50.000 0.00 0.00 0.00 2.59
3902 4269 0.037975 TTTTGGGACGGAGCGAGTAC 60.038 55.000 0.00 0.00 0.00 2.73
3903 4270 1.180456 TTTGGGACGGAGCGAGTACA 61.180 55.000 0.00 0.00 0.00 2.90
3904 4271 1.180456 TTGGGACGGAGCGAGTACAA 61.180 55.000 0.00 0.00 0.00 2.41
3905 4272 1.139095 GGGACGGAGCGAGTACAAG 59.861 63.158 0.00 0.00 0.00 3.16
4082 4450 4.371590 TCGCACGCAGGCAAGCTA 62.372 61.111 0.00 0.00 0.00 3.32
4094 4462 5.039333 GCAGGCAAGCTAAAATGATTACAG 58.961 41.667 0.00 0.00 0.00 2.74
4125 4493 3.716195 TGGCCCGACCACTGGATG 61.716 66.667 0.00 0.00 46.36 3.51
4164 4532 1.227674 GATCGCCCCGCTCATCTTT 60.228 57.895 0.00 0.00 0.00 2.52
4257 4626 0.833834 CCAGGATATCCAGGGAGCGT 60.834 60.000 22.68 0.00 38.87 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.877864 ATATTCTCTGACAGAGGGAGTATTAG 57.122 38.462 28.13 3.93 42.54 1.73
3 4 9.308000 CTTATATTCTCTGACAGAGGGAGTATT 57.692 37.037 28.13 10.56 42.54 1.89
4 5 8.674173 TCTTATATTCTCTGACAGAGGGAGTAT 58.326 37.037 28.13 21.13 42.54 2.12
6 7 6.916909 TCTTATATTCTCTGACAGAGGGAGT 58.083 40.000 28.13 16.26 42.54 3.85
7 8 7.521423 CGTTCTTATATTCTCTGACAGAGGGAG 60.521 44.444 28.13 17.23 42.54 4.30
8 9 6.263392 CGTTCTTATATTCTCTGACAGAGGGA 59.737 42.308 28.13 18.87 42.54 4.20
9 10 6.039941 ACGTTCTTATATTCTCTGACAGAGGG 59.960 42.308 28.13 8.82 42.54 4.30
10 11 7.033530 ACGTTCTTATATTCTCTGACAGAGG 57.966 40.000 28.13 13.07 42.54 3.69
12 13 9.706691 AAAAACGTTCTTATATTCTCTGACAGA 57.293 29.630 0.00 4.78 0.00 3.41
13 14 9.746711 CAAAAACGTTCTTATATTCTCTGACAG 57.253 33.333 0.00 0.00 0.00 3.51
14 15 9.483916 TCAAAAACGTTCTTATATTCTCTGACA 57.516 29.630 0.00 0.00 0.00 3.58
15 16 9.742552 GTCAAAAACGTTCTTATATTCTCTGAC 57.257 33.333 0.00 0.00 0.00 3.51
16 17 9.483916 TGTCAAAAACGTTCTTATATTCTCTGA 57.516 29.630 0.00 0.00 0.00 3.27
17 18 9.530129 GTGTCAAAAACGTTCTTATATTCTCTG 57.470 33.333 0.00 0.00 0.00 3.35
18 19 9.490379 AGTGTCAAAAACGTTCTTATATTCTCT 57.510 29.630 0.00 0.00 0.00 3.10
22 23 9.769093 GCATAGTGTCAAAAACGTTCTTATATT 57.231 29.630 0.00 0.00 0.00 1.28
23 24 9.162764 AGCATAGTGTCAAAAACGTTCTTATAT 57.837 29.630 0.00 0.00 0.00 0.86
24 25 8.542497 AGCATAGTGTCAAAAACGTTCTTATA 57.458 30.769 0.00 0.00 0.00 0.98
25 26 7.435068 AGCATAGTGTCAAAAACGTTCTTAT 57.565 32.000 0.00 0.00 0.00 1.73
26 27 6.854496 AGCATAGTGTCAAAAACGTTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
27 28 5.751243 AGCATAGTGTCAAAAACGTTCTT 57.249 34.783 0.00 0.00 0.00 2.52
28 29 6.467723 CTAGCATAGTGTCAAAAACGTTCT 57.532 37.500 0.00 0.00 32.85 3.01
76 77 6.117488 TCCCTCCGTTCCAAAATATAAGAAC 58.883 40.000 0.00 0.00 36.19 3.01
77 78 6.069847 ACTCCCTCCGTTCCAAAATATAAGAA 60.070 38.462 0.00 0.00 0.00 2.52
78 79 5.427481 ACTCCCTCCGTTCCAAAATATAAGA 59.573 40.000 0.00 0.00 0.00 2.10
79 80 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
80 81 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
81 82 5.901276 ACTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
82 83 4.720273 ACTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
83 84 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
84 85 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
85 86 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
86 87 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
87 88 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
88 89 4.166725 TCTTATACTACTCCCTCCGTTCCA 59.833 45.833 0.00 0.00 0.00 3.53
89 90 4.518590 GTCTTATACTACTCCCTCCGTTCC 59.481 50.000 0.00 0.00 0.00 3.62
90 91 5.375773 AGTCTTATACTACTCCCTCCGTTC 58.624 45.833 0.00 0.00 36.36 3.95
91 92 5.385628 AGTCTTATACTACTCCCTCCGTT 57.614 43.478 0.00 0.00 36.36 4.44
92 93 5.512921 GCTAGTCTTATACTACTCCCTCCGT 60.513 48.000 0.00 0.00 39.80 4.69
93 94 4.937015 GCTAGTCTTATACTACTCCCTCCG 59.063 50.000 0.00 0.00 39.80 4.63
94 95 5.222089 TGGCTAGTCTTATACTACTCCCTCC 60.222 48.000 0.00 0.00 39.80 4.30
95 96 5.706833 GTGGCTAGTCTTATACTACTCCCTC 59.293 48.000 0.00 0.00 39.80 4.30
96 97 5.133999 TGTGGCTAGTCTTATACTACTCCCT 59.866 44.000 0.00 0.00 39.80 4.20
97 98 5.383476 TGTGGCTAGTCTTATACTACTCCC 58.617 45.833 0.00 0.00 39.80 4.30
98 99 6.956202 TTGTGGCTAGTCTTATACTACTCC 57.044 41.667 0.00 0.00 39.80 3.85
100 101 9.643735 ACTAATTGTGGCTAGTCTTATACTACT 57.356 33.333 0.00 0.00 39.80 2.57
106 107 9.547753 CATGTTACTAATTGTGGCTAGTCTTAT 57.452 33.333 0.00 0.00 30.98 1.73
107 108 8.537016 ACATGTTACTAATTGTGGCTAGTCTTA 58.463 33.333 0.00 0.00 30.98 2.10
108 109 7.394816 ACATGTTACTAATTGTGGCTAGTCTT 58.605 34.615 0.00 0.00 30.98 3.01
109 110 6.947464 ACATGTTACTAATTGTGGCTAGTCT 58.053 36.000 0.00 0.00 30.98 3.24
110 111 7.611213 AACATGTTACTAATTGTGGCTAGTC 57.389 36.000 9.97 0.00 30.98 2.59
111 112 8.488651 GTAACATGTTACTAATTGTGGCTAGT 57.511 34.615 32.21 0.82 41.51 2.57
128 129 9.917887 AGGTAGTAACATAGAGTAGTAACATGT 57.082 33.333 0.00 0.00 0.00 3.21
137 138 9.570468 CCATTGTAGAGGTAGTAACATAGAGTA 57.430 37.037 0.00 0.00 0.00 2.59
138 139 8.280084 TCCATTGTAGAGGTAGTAACATAGAGT 58.720 37.037 0.00 0.00 0.00 3.24
139 140 8.693120 TCCATTGTAGAGGTAGTAACATAGAG 57.307 38.462 0.00 0.00 0.00 2.43
140 141 8.280084 ACTCCATTGTAGAGGTAGTAACATAGA 58.720 37.037 0.00 0.00 35.58 1.98
141 142 8.466617 ACTCCATTGTAGAGGTAGTAACATAG 57.533 38.462 0.00 0.00 35.58 2.23
142 143 9.925545 TTACTCCATTGTAGAGGTAGTAACATA 57.074 33.333 0.00 0.00 35.58 2.29
143 144 8.834004 TTACTCCATTGTAGAGGTAGTAACAT 57.166 34.615 0.00 0.00 35.58 2.71
144 145 8.834004 ATTACTCCATTGTAGAGGTAGTAACA 57.166 34.615 0.00 0.00 34.00 2.41
151 152 9.381038 ACACATATATTACTCCATTGTAGAGGT 57.619 33.333 0.00 0.00 35.58 3.85
152 153 9.645059 CACACATATATTACTCCATTGTAGAGG 57.355 37.037 0.00 0.00 35.58 3.69
153 154 9.645059 CCACACATATATTACTCCATTGTAGAG 57.355 37.037 0.00 0.00 37.39 2.43
154 155 9.154632 ACCACACATATATTACTCCATTGTAGA 57.845 33.333 0.00 0.00 0.00 2.59
157 158 9.555727 GTTACCACACATATATTACTCCATTGT 57.444 33.333 0.00 0.00 0.00 2.71
158 159 9.554395 TGTTACCACACATATATTACTCCATTG 57.446 33.333 0.00 0.00 0.00 2.82
160 161 9.725019 CATGTTACCACACATATATTACTCCAT 57.275 33.333 0.00 0.00 35.51 3.41
161 162 7.659799 GCATGTTACCACACATATATTACTCCA 59.340 37.037 0.00 0.00 35.51 3.86
162 163 7.659799 TGCATGTTACCACACATATATTACTCC 59.340 37.037 0.00 0.00 35.51 3.85
163 164 8.601845 TGCATGTTACCACACATATATTACTC 57.398 34.615 0.00 0.00 35.51 2.59
164 165 8.836413 GTTGCATGTTACCACACATATATTACT 58.164 33.333 0.00 0.00 35.51 2.24
165 166 8.616942 TGTTGCATGTTACCACACATATATTAC 58.383 33.333 0.00 0.00 35.51 1.89
166 167 8.616942 GTGTTGCATGTTACCACACATATATTA 58.383 33.333 10.02 0.00 35.51 0.98
167 168 7.339212 AGTGTTGCATGTTACCACACATATATT 59.661 33.333 15.74 0.00 35.51 1.28
168 169 6.828273 AGTGTTGCATGTTACCACACATATAT 59.172 34.615 15.74 0.00 35.51 0.86
169 170 6.176896 AGTGTTGCATGTTACCACACATATA 58.823 36.000 15.74 0.00 35.51 0.86
170 171 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
171 172 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
172 173 3.221771 AGTGTTGCATGTTACCACACAT 58.778 40.909 15.74 1.51 37.93 3.21
173 174 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
174 175 3.066064 TGAAGTGTTGCATGTTACCACAC 59.934 43.478 7.36 7.36 35.03 3.82
175 176 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
176 177 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
177 178 5.528043 AAATGAAGTGTTGCATGTTACCA 57.472 34.783 0.00 0.00 0.00 3.25
178 179 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
179 180 9.289303 CCTAATAAATGAAGTGTTGCATGTTAC 57.711 33.333 0.00 0.00 0.00 2.50
180 181 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
181 182 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
182 183 6.153340 AGCCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
183 184 6.567050 AGCCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
184 185 6.780457 AGCCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
185 186 7.880160 ATAGCCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
186 187 9.273016 TCTATAGCCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
196 197 9.883142 GCAAGATGAGTCTATAGCCTAATAAAT 57.117 33.333 0.00 0.00 33.30 1.40
197 198 8.314751 GGCAAGATGAGTCTATAGCCTAATAAA 58.685 37.037 0.00 0.00 40.78 1.40
198 199 7.676043 AGGCAAGATGAGTCTATAGCCTAATAA 59.324 37.037 13.74 0.00 46.63 1.40
199 200 7.185565 AGGCAAGATGAGTCTATAGCCTAATA 58.814 38.462 13.74 0.00 46.63 0.98
200 201 6.022315 AGGCAAGATGAGTCTATAGCCTAAT 58.978 40.000 13.74 0.00 46.63 1.73
201 202 5.398236 AGGCAAGATGAGTCTATAGCCTAA 58.602 41.667 13.74 0.00 46.63 2.69
202 203 5.004361 AGGCAAGATGAGTCTATAGCCTA 57.996 43.478 13.74 0.00 46.63 3.93
203 204 3.855668 AGGCAAGATGAGTCTATAGCCT 58.144 45.455 11.05 11.05 45.15 4.58
204 205 4.039730 TCAAGGCAAGATGAGTCTATAGCC 59.960 45.833 0.00 0.00 42.62 3.93
205 206 5.207110 TCAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
206 207 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
207 208 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
208 209 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
209 210 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
210 211 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
211 212 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
212 213 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
213 214 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
214 215 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
215 216 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
216 217 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
217 218 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
218 219 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
219 220 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
220 221 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
221 222 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
222 223 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
223 224 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
229 230 9.409918 ACTACTAGTATGAGTAACATCACACAT 57.590 33.333 2.33 0.00 40.07 3.21
230 231 8.803397 ACTACTAGTATGAGTAACATCACACA 57.197 34.615 2.33 0.00 40.07 3.72
252 253 9.976511 GGCATGTGATAACATAACTAGTTACTA 57.023 33.333 17.45 9.78 34.59 1.82
253 254 8.705594 AGGCATGTGATAACATAACTAGTTACT 58.294 33.333 17.45 7.99 34.59 2.24
254 255 8.888579 AGGCATGTGATAACATAACTAGTTAC 57.111 34.615 17.45 5.78 34.59 2.50
255 256 8.924303 AGAGGCATGTGATAACATAACTAGTTA 58.076 33.333 17.41 17.41 36.06 2.24
256 257 7.796054 AGAGGCATGTGATAACATAACTAGTT 58.204 34.615 13.68 13.68 0.00 2.24
257 258 7.288852 AGAGAGGCATGTGATAACATAACTAGT 59.711 37.037 0.00 0.00 0.00 2.57
258 259 7.665690 AGAGAGGCATGTGATAACATAACTAG 58.334 38.462 0.00 0.00 0.00 2.57
259 260 7.603180 AGAGAGGCATGTGATAACATAACTA 57.397 36.000 0.00 0.00 0.00 2.24
260 261 6.491714 AGAGAGGCATGTGATAACATAACT 57.508 37.500 0.00 0.00 0.00 2.24
261 262 7.497249 AGAAAGAGAGGCATGTGATAACATAAC 59.503 37.037 0.00 0.00 0.00 1.89
262 263 7.568349 AGAAAGAGAGGCATGTGATAACATAA 58.432 34.615 0.00 0.00 0.00 1.90
263 264 7.129457 AGAAAGAGAGGCATGTGATAACATA 57.871 36.000 0.00 0.00 0.00 2.29
264 265 5.999044 AGAAAGAGAGGCATGTGATAACAT 58.001 37.500 0.00 0.00 0.00 2.71
265 266 5.426689 AGAAAGAGAGGCATGTGATAACA 57.573 39.130 0.00 0.00 0.00 2.41
266 267 5.877012 TGAAGAAAGAGAGGCATGTGATAAC 59.123 40.000 0.00 0.00 0.00 1.89
267 268 6.053632 TGAAGAAAGAGAGGCATGTGATAA 57.946 37.500 0.00 0.00 0.00 1.75
268 269 5.682234 TGAAGAAAGAGAGGCATGTGATA 57.318 39.130 0.00 0.00 0.00 2.15
269 270 4.564782 TGAAGAAAGAGAGGCATGTGAT 57.435 40.909 0.00 0.00 0.00 3.06
270 271 4.564782 ATGAAGAAAGAGAGGCATGTGA 57.435 40.909 0.00 0.00 0.00 3.58
271 272 5.640189 AAATGAAGAAAGAGAGGCATGTG 57.360 39.130 0.00 0.00 0.00 3.21
272 273 7.951347 AATAAATGAAGAAAGAGAGGCATGT 57.049 32.000 0.00 0.00 0.00 3.21
273 274 9.118300 AGTAATAAATGAAGAAAGAGAGGCATG 57.882 33.333 0.00 0.00 0.00 4.06
274 275 9.692325 AAGTAATAAATGAAGAAAGAGAGGCAT 57.308 29.630 0.00 0.00 0.00 4.40
275 276 8.950210 CAAGTAATAAATGAAGAAAGAGAGGCA 58.050 33.333 0.00 0.00 0.00 4.75
276 277 7.912773 GCAAGTAATAAATGAAGAAAGAGAGGC 59.087 37.037 0.00 0.00 0.00 4.70
277 278 8.401709 GGCAAGTAATAAATGAAGAAAGAGAGG 58.598 37.037 0.00 0.00 0.00 3.69
278 279 8.950210 TGGCAAGTAATAAATGAAGAAAGAGAG 58.050 33.333 0.00 0.00 0.00 3.20
279 280 8.730680 GTGGCAAGTAATAAATGAAGAAAGAGA 58.269 33.333 0.00 0.00 0.00 3.10
280 281 8.514594 TGTGGCAAGTAATAAATGAAGAAAGAG 58.485 33.333 0.00 0.00 0.00 2.85
281 282 8.402798 TGTGGCAAGTAATAAATGAAGAAAGA 57.597 30.769 0.00 0.00 0.00 2.52
282 283 9.294030 GATGTGGCAAGTAATAAATGAAGAAAG 57.706 33.333 0.00 0.00 0.00 2.62
283 284 8.801299 TGATGTGGCAAGTAATAAATGAAGAAA 58.199 29.630 0.00 0.00 0.00 2.52
284 285 8.347004 TGATGTGGCAAGTAATAAATGAAGAA 57.653 30.769 0.00 0.00 0.00 2.52
285 286 7.936496 TGATGTGGCAAGTAATAAATGAAGA 57.064 32.000 0.00 0.00 0.00 2.87
286 287 9.590451 AAATGATGTGGCAAGTAATAAATGAAG 57.410 29.630 0.00 0.00 0.00 3.02
337 338 9.661563 CCCACAGTGAAAGTAACATAAATAGTA 57.338 33.333 0.62 0.00 0.00 1.82
338 339 8.161425 ACCCACAGTGAAAGTAACATAAATAGT 58.839 33.333 0.62 0.00 0.00 2.12
339 340 8.561738 ACCCACAGTGAAAGTAACATAAATAG 57.438 34.615 0.62 0.00 0.00 1.73
340 341 9.661563 CTACCCACAGTGAAAGTAACATAAATA 57.338 33.333 0.62 0.00 0.00 1.40
341 342 8.161425 ACTACCCACAGTGAAAGTAACATAAAT 58.839 33.333 0.62 0.00 0.00 1.40
342 343 7.511268 ACTACCCACAGTGAAAGTAACATAAA 58.489 34.615 0.62 0.00 0.00 1.40
343 344 7.015877 AGACTACCCACAGTGAAAGTAACATAA 59.984 37.037 0.62 0.00 0.00 1.90
344 345 6.495872 AGACTACCCACAGTGAAAGTAACATA 59.504 38.462 0.62 0.00 0.00 2.29
345 346 5.307196 AGACTACCCACAGTGAAAGTAACAT 59.693 40.000 0.62 0.00 0.00 2.71
346 347 4.652421 AGACTACCCACAGTGAAAGTAACA 59.348 41.667 0.62 0.00 0.00 2.41
347 348 5.211174 AGACTACCCACAGTGAAAGTAAC 57.789 43.478 0.62 0.00 0.00 2.50
348 349 6.982160 TTAGACTACCCACAGTGAAAGTAA 57.018 37.500 0.62 0.00 0.00 2.24
349 350 6.982160 TTTAGACTACCCACAGTGAAAGTA 57.018 37.500 0.62 0.26 0.00 2.24
350 351 5.881923 TTTAGACTACCCACAGTGAAAGT 57.118 39.130 0.62 2.09 0.00 2.66
372 373 9.351570 GAGTACTAGTACATCTAAACGCTTTTT 57.648 33.333 29.87 7.72 38.48 1.94
373 374 7.972832 GGAGTACTAGTACATCTAAACGCTTTT 59.027 37.037 29.87 8.32 38.48 2.27
374 375 7.416101 GGGAGTACTAGTACATCTAAACGCTTT 60.416 40.741 29.87 8.72 38.48 3.51
375 376 6.039159 GGGAGTACTAGTACATCTAAACGCTT 59.961 42.308 29.87 8.91 38.48 4.68
376 377 5.530543 GGGAGTACTAGTACATCTAAACGCT 59.469 44.000 29.87 9.38 38.48 5.07
377 378 5.530543 AGGGAGTACTAGTACATCTAAACGC 59.469 44.000 29.87 18.87 38.48 4.84
378 379 7.281774 TGAAGGGAGTACTAGTACATCTAAACG 59.718 40.741 29.87 0.00 38.48 3.60
379 380 8.517062 TGAAGGGAGTACTAGTACATCTAAAC 57.483 38.462 29.87 17.05 38.48 2.01
380 381 9.710818 AATGAAGGGAGTACTAGTACATCTAAA 57.289 33.333 29.87 16.47 38.48 1.85
381 382 9.710818 AAATGAAGGGAGTACTAGTACATCTAA 57.289 33.333 29.87 16.73 38.48 2.10
382 383 9.710818 AAAATGAAGGGAGTACTAGTACATCTA 57.289 33.333 29.87 12.99 38.48 1.98
383 384 8.611051 AAAATGAAGGGAGTACTAGTACATCT 57.389 34.615 29.87 20.95 38.48 2.90
393 394 9.983804 CGAACTAAATAAAAATGAAGGGAGTAC 57.016 33.333 0.00 0.00 0.00 2.73
394 395 8.671028 GCGAACTAAATAAAAATGAAGGGAGTA 58.329 33.333 0.00 0.00 0.00 2.59
395 396 7.175990 TGCGAACTAAATAAAAATGAAGGGAGT 59.824 33.333 0.00 0.00 0.00 3.85
396 397 7.535139 TGCGAACTAAATAAAAATGAAGGGAG 58.465 34.615 0.00 0.00 0.00 4.30
397 398 7.455641 TGCGAACTAAATAAAAATGAAGGGA 57.544 32.000 0.00 0.00 0.00 4.20
398 399 9.965824 ATATGCGAACTAAATAAAAATGAAGGG 57.034 29.630 0.00 0.00 0.00 3.95
407 408 9.944663 CCAAAGCTAATATGCGAACTAAATAAA 57.055 29.630 0.00 0.00 38.13 1.40
408 409 9.116067 ACCAAAGCTAATATGCGAACTAAATAA 57.884 29.630 0.00 0.00 38.13 1.40
409 410 8.671384 ACCAAAGCTAATATGCGAACTAAATA 57.329 30.769 0.00 0.00 38.13 1.40
410 411 7.282224 TGACCAAAGCTAATATGCGAACTAAAT 59.718 33.333 0.00 0.00 38.13 1.40
411 412 6.596106 TGACCAAAGCTAATATGCGAACTAAA 59.404 34.615 0.00 0.00 38.13 1.85
412 413 6.110033 TGACCAAAGCTAATATGCGAACTAA 58.890 36.000 0.00 0.00 38.13 2.24
413 414 5.666462 TGACCAAAGCTAATATGCGAACTA 58.334 37.500 0.00 0.00 38.13 2.24
414 415 4.513442 TGACCAAAGCTAATATGCGAACT 58.487 39.130 0.00 0.00 38.13 3.01
415 416 4.875544 TGACCAAAGCTAATATGCGAAC 57.124 40.909 0.00 0.00 38.13 3.95
416 417 5.879237 CTTTGACCAAAGCTAATATGCGAA 58.121 37.500 9.25 0.00 40.94 4.70
417 418 5.484173 CTTTGACCAAAGCTAATATGCGA 57.516 39.130 9.25 0.00 40.94 5.10
429 430 8.145122 AGTTTGTAAAACTTGACTTTGACCAAA 58.855 29.630 0.00 0.00 0.00 3.28
430 431 7.662897 AGTTTGTAAAACTTGACTTTGACCAA 58.337 30.769 0.00 0.00 0.00 3.67
431 432 7.222000 AGTTTGTAAAACTTGACTTTGACCA 57.778 32.000 0.00 0.00 0.00 4.02
432 433 8.528917 AAAGTTTGTAAAACTTGACTTTGACC 57.471 30.769 16.50 0.00 40.10 4.02
436 437 8.145122 TGGTCAAAGTTTGTAAAACTTGACTTT 58.855 29.630 25.79 12.21 40.10 2.66
437 438 7.662897 TGGTCAAAGTTTGTAAAACTTGACTT 58.337 30.769 25.79 11.60 40.10 3.01
438 439 7.222000 TGGTCAAAGTTTGTAAAACTTGACT 57.778 32.000 25.79 11.83 40.10 3.41
439 440 7.876896 TTGGTCAAAGTTTGTAAAACTTGAC 57.123 32.000 22.81 22.81 40.10 3.18
544 545 9.868277 CTCTTCATATTAGAGTTGACTGAAGTT 57.132 33.333 8.68 0.00 39.25 2.66
562 563 9.947433 TCCCTTCGTTTTTATTTACTCTTCATA 57.053 29.630 0.00 0.00 0.00 2.15
563 564 8.857694 TCCCTTCGTTTTTATTTACTCTTCAT 57.142 30.769 0.00 0.00 0.00 2.57
564 565 7.935210 ACTCCCTTCGTTTTTATTTACTCTTCA 59.065 33.333 0.00 0.00 0.00 3.02
565 566 8.320396 ACTCCCTTCGTTTTTATTTACTCTTC 57.680 34.615 0.00 0.00 0.00 2.87
566 567 9.212641 GTACTCCCTTCGTTTTTATTTACTCTT 57.787 33.333 0.00 0.00 0.00 2.85
567 568 8.370182 TGTACTCCCTTCGTTTTTATTTACTCT 58.630 33.333 0.00 0.00 0.00 3.24
568 569 8.538409 TGTACTCCCTTCGTTTTTATTTACTC 57.462 34.615 0.00 0.00 0.00 2.59
569 570 8.943002 CATGTACTCCCTTCGTTTTTATTTACT 58.057 33.333 0.00 0.00 0.00 2.24
570 571 7.695201 GCATGTACTCCCTTCGTTTTTATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
571 572 7.413219 CGCATGTACTCCCTTCGTTTTTATTTA 60.413 37.037 0.00 0.00 0.00 1.40
572 573 6.617879 GCATGTACTCCCTTCGTTTTTATTT 58.382 36.000 0.00 0.00 0.00 1.40
573 574 5.163794 CGCATGTACTCCCTTCGTTTTTATT 60.164 40.000 0.00 0.00 0.00 1.40
574 575 4.331717 CGCATGTACTCCCTTCGTTTTTAT 59.668 41.667 0.00 0.00 0.00 1.40
575 576 3.680937 CGCATGTACTCCCTTCGTTTTTA 59.319 43.478 0.00 0.00 0.00 1.52
576 577 2.482721 CGCATGTACTCCCTTCGTTTTT 59.517 45.455 0.00 0.00 0.00 1.94
577 578 2.073816 CGCATGTACTCCCTTCGTTTT 58.926 47.619 0.00 0.00 0.00 2.43
578 579 1.274167 TCGCATGTACTCCCTTCGTTT 59.726 47.619 0.00 0.00 0.00 3.60
579 580 0.892755 TCGCATGTACTCCCTTCGTT 59.107 50.000 0.00 0.00 0.00 3.85
580 581 1.112113 ATCGCATGTACTCCCTTCGT 58.888 50.000 0.00 0.00 0.00 3.85
581 582 2.128035 GAATCGCATGTACTCCCTTCG 58.872 52.381 0.00 0.00 0.00 3.79
582 583 2.128035 CGAATCGCATGTACTCCCTTC 58.872 52.381 0.00 0.00 0.00 3.46
583 584 1.480954 ACGAATCGCATGTACTCCCTT 59.519 47.619 1.15 0.00 0.00 3.95
584 585 1.112113 ACGAATCGCATGTACTCCCT 58.888 50.000 1.15 0.00 0.00 4.20
585 586 1.202371 TCACGAATCGCATGTACTCCC 60.202 52.381 1.15 0.00 0.00 4.30
586 587 2.203800 TCACGAATCGCATGTACTCC 57.796 50.000 1.15 0.00 0.00 3.85
587 588 2.726760 GGATCACGAATCGCATGTACTC 59.273 50.000 1.15 0.00 34.99 2.59
588 589 2.362397 AGGATCACGAATCGCATGTACT 59.638 45.455 1.15 0.00 34.99 2.73
589 590 2.472861 CAGGATCACGAATCGCATGTAC 59.527 50.000 1.15 0.00 34.99 2.90
590 591 2.100749 ACAGGATCACGAATCGCATGTA 59.899 45.455 1.15 0.00 34.99 2.29
591 592 1.134699 ACAGGATCACGAATCGCATGT 60.135 47.619 1.15 0.00 34.99 3.21
592 593 1.259770 CACAGGATCACGAATCGCATG 59.740 52.381 1.15 0.00 34.99 4.06
593 594 1.575244 CACAGGATCACGAATCGCAT 58.425 50.000 1.15 0.00 34.99 4.73
594 595 1.083806 GCACAGGATCACGAATCGCA 61.084 55.000 1.15 0.00 34.99 5.10
595 596 1.638467 GCACAGGATCACGAATCGC 59.362 57.895 1.15 0.00 34.99 4.58
596 597 0.460109 TGGCACAGGATCACGAATCG 60.460 55.000 0.00 0.00 34.99 3.34
597 598 3.458872 TGGCACAGGATCACGAATC 57.541 52.632 0.00 0.00 0.00 2.52
607 608 4.788967 ACCACTGGTTGTATGGCACAGG 62.789 54.545 0.00 0.00 34.12 4.00
608 609 1.545428 ACCACTGGTTGTATGGCACAG 60.545 52.381 0.00 0.00 34.12 3.66
609 610 0.476338 ACCACTGGTTGTATGGCACA 59.524 50.000 0.00 0.00 35.25 4.57
610 611 0.881118 CACCACTGGTTGTATGGCAC 59.119 55.000 0.00 0.00 36.96 5.01
611 612 0.767998 TCACCACTGGTTGTATGGCA 59.232 50.000 0.00 0.00 36.96 4.92
612 613 1.539827 GTTCACCACTGGTTGTATGGC 59.460 52.381 0.00 0.00 36.96 4.40
613 614 2.159382 GGTTCACCACTGGTTGTATGG 58.841 52.381 0.00 0.00 39.57 2.74
623 624 1.213296 ACACTGGAAGGTTCACCACT 58.787 50.000 0.00 0.00 39.30 4.00
639 640 7.148523 CGTTGGGGAAAAAGATACTACTAACAC 60.149 40.741 0.00 0.00 0.00 3.32
641 642 6.183360 GCGTTGGGGAAAAAGATACTACTAAC 60.183 42.308 0.00 0.00 0.00 2.34
642 643 5.876460 GCGTTGGGGAAAAAGATACTACTAA 59.124 40.000 0.00 0.00 0.00 2.24
650 651 0.902984 GGGGCGTTGGGGAAAAAGAT 60.903 55.000 0.00 0.00 0.00 2.40
651 652 1.532078 GGGGCGTTGGGGAAAAAGA 60.532 57.895 0.00 0.00 0.00 2.52
652 653 2.926420 CGGGGCGTTGGGGAAAAAG 61.926 63.158 0.00 0.00 0.00 2.27
724 729 2.761767 GGGAGAAGAAGACTGGGAGTAC 59.238 54.545 0.00 0.00 0.00 2.73
1148 1153 2.890847 GATGTACAGCCGCAGCGTCT 62.891 60.000 15.05 2.24 46.67 4.18
1588 1593 6.293955 GCATAATAACGAGCACCACCATAAAT 60.294 38.462 0.00 0.00 0.00 1.40
1664 1671 3.082055 GGGTCCGGGAGAGGGAAC 61.082 72.222 0.00 0.00 40.69 3.62
1724 1731 7.385478 GCAACACCTAGAAGGCTAGAAATATAC 59.615 40.741 0.00 0.00 45.71 1.47
1725 1732 7.070696 TGCAACACCTAGAAGGCTAGAAATATA 59.929 37.037 0.00 0.00 45.71 0.86
1795 1804 8.330302 CCAGAAAAATAAAAAGTTGCTCACAAG 58.670 33.333 0.00 0.00 36.16 3.16
1817 1826 3.254470 TGAAGTCGTGAAAACACCAGA 57.746 42.857 0.00 0.00 0.00 3.86
1947 1964 9.109393 GCACTGGAATGATTTAAAGTAGATACA 57.891 33.333 0.00 0.00 0.00 2.29
2013 2030 5.356751 AGTTAGTGTTGAACATGAGTGCAAA 59.643 36.000 0.00 0.00 44.76 3.68
2070 2087 4.149598 GGTTCATTTGAAACACCCCTACT 58.850 43.478 3.49 0.00 41.25 2.57
2100 2117 5.283012 GGCGATTTACGTGAAATTTCTCAAC 59.717 40.000 18.64 8.19 44.60 3.18
2160 2177 6.093082 ACATCACCATCATATGCATTATGTCG 59.907 38.462 3.54 1.01 39.06 4.35
2324 2341 3.069729 GCCTAGAAGTAATGATCCACGGT 59.930 47.826 0.00 0.00 0.00 4.83
2353 2370 4.142160 TGGTACAACAGATTCTCTGATCCG 60.142 45.833 10.94 0.00 46.84 4.18
2390 2407 3.265791 GCTGAGGACTGAACCATACAAG 58.734 50.000 0.00 0.00 0.00 3.16
2395 2412 0.036952 CGTGCTGAGGACTGAACCAT 60.037 55.000 1.91 0.00 0.00 3.55
2452 2469 2.492196 GGGACGGAGGGAGTATAATCCA 60.492 54.545 20.23 0.00 41.52 3.41
2459 2476 1.557832 CATTTTGGGACGGAGGGAGTA 59.442 52.381 0.00 0.00 0.00 2.59
2460 2477 0.328258 CATTTTGGGACGGAGGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
2461 2478 0.618458 TCATTTTGGGACGGAGGGAG 59.382 55.000 0.00 0.00 0.00 4.30
2462 2479 0.618458 CTCATTTTGGGACGGAGGGA 59.382 55.000 0.00 0.00 0.00 4.20
2463 2480 0.328258 ACTCATTTTGGGACGGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
2464 2481 1.271379 ACACTCATTTTGGGACGGAGG 60.271 52.381 0.00 0.00 0.00 4.30
2465 2482 2.076863 GACACTCATTTTGGGACGGAG 58.923 52.381 0.00 0.00 0.00 4.63
2466 2483 1.697432 AGACACTCATTTTGGGACGGA 59.303 47.619 0.00 0.00 0.00 4.69
2467 2484 2.076863 GAGACACTCATTTTGGGACGG 58.923 52.381 0.00 0.00 0.00 4.79
2468 2485 2.766313 TGAGACACTCATTTTGGGACG 58.234 47.619 0.00 0.00 35.39 4.79
2469 2486 3.882888 TGTTGAGACACTCATTTTGGGAC 59.117 43.478 2.30 0.00 40.39 4.46
2470 2487 4.163441 TGTTGAGACACTCATTTTGGGA 57.837 40.909 2.30 0.00 40.39 4.37
2471 2488 4.580167 TCTTGTTGAGACACTCATTTTGGG 59.420 41.667 2.30 0.00 40.39 4.12
2472 2489 5.756195 TCTTGTTGAGACACTCATTTTGG 57.244 39.130 2.30 0.00 40.39 3.28
2484 2501 6.262273 GTCCCAAAATAAGTGTCTTGTTGAGA 59.738 38.462 0.00 0.00 0.00 3.27
2485 2502 6.438763 GTCCCAAAATAAGTGTCTTGTTGAG 58.561 40.000 0.00 0.00 0.00 3.02
2486 2503 5.008217 CGTCCCAAAATAAGTGTCTTGTTGA 59.992 40.000 0.00 0.00 0.00 3.18
2487 2504 5.212194 CGTCCCAAAATAAGTGTCTTGTTG 58.788 41.667 0.00 0.00 0.00 3.33
2488 2505 4.277423 CCGTCCCAAAATAAGTGTCTTGTT 59.723 41.667 0.00 0.00 0.00 2.83
2489 2506 3.818773 CCGTCCCAAAATAAGTGTCTTGT 59.181 43.478 0.00 0.00 0.00 3.16
2490 2507 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2491 2508 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2492 2509 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2493 2510 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2494 2511 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2495 2512 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2496 2513 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2497 2514 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2498 2515 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2499 2516 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2500 2517 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2501 2518 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2502 2519 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2503 2520 3.400322 ACTATATACTCCCTCCGTCCCAA 59.600 47.826 0.00 0.00 0.00 4.12
2504 2521 2.991713 ACTATATACTCCCTCCGTCCCA 59.008 50.000 0.00 0.00 0.00 4.37
2505 2522 3.735720 ACTATATACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
2506 2523 6.421485 TGAATACTATATACTCCCTCCGTCC 58.579 44.000 0.00 0.00 0.00 4.79
2507 2524 9.624373 TTATGAATACTATATACTCCCTCCGTC 57.376 37.037 0.00 0.00 0.00 4.79
2508 2525 9.986157 TTTATGAATACTATATACTCCCTCCGT 57.014 33.333 0.00 0.00 0.00 4.69
2555 2572 8.424274 AGTGAGTTGAAATTTGAATTCCAAAC 57.576 30.769 9.70 3.13 46.41 2.93
2700 2717 1.002366 GCTAGACACGCATTGGTCAG 58.998 55.000 0.00 0.00 36.50 3.51
2737 2755 9.635520 AAGAAAAGAGTGAATGCTATTTGATTG 57.364 29.630 0.00 0.00 31.30 2.67
2931 2949 6.760770 AGAAGAGTACAGAAGCAATTCATAGC 59.239 38.462 0.00 0.00 0.00 2.97
2977 2995 2.961062 AGCAAAGGCACAGACTGAAAAT 59.039 40.909 10.08 0.00 44.61 1.82
2987 3005 1.442567 CCAGCAAAGCAAAGGCACA 59.557 52.632 0.00 0.00 44.61 4.57
3032 3050 1.066002 CCAACTGCAGTGAACAACCAG 59.934 52.381 22.49 2.20 0.00 4.00
3527 3589 7.230712 AGCATCTGATTGAAATGCATGAATCTA 59.769 33.333 19.42 9.59 46.43 1.98
3724 4091 7.719483 TCTATTTCTGCATGAATTTGGGATTC 58.281 34.615 0.00 0.00 34.24 2.52
3801 4168 4.505367 TGGGACGGAGGGGTATAAAATAT 58.495 43.478 0.00 0.00 0.00 1.28
3812 4179 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3813 4180 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3814 4181 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3816 4183 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
3818 4185 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3819 4186 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3820 4187 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3821 4188 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
3822 4189 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
3825 4192 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
3827 4194 9.204570 GAATTTGTACTAAGCTCAAGACACTTA 57.795 33.333 3.19 0.00 0.00 2.24
3829 4196 7.217200 TGAATTTGTACTAAGCTCAAGACACT 58.783 34.615 3.19 0.00 0.00 3.55
3830 4197 7.421530 TGAATTTGTACTAAGCTCAAGACAC 57.578 36.000 3.19 2.09 0.00 3.67
3831 4198 9.151471 GTATGAATTTGTACTAAGCTCAAGACA 57.849 33.333 3.19 0.00 0.00 3.41
3832 4199 9.372369 AGTATGAATTTGTACTAAGCTCAAGAC 57.628 33.333 3.19 8.96 29.75 3.01
3837 4204 9.187455 GCTCTAGTATGAATTTGTACTAAGCTC 57.813 37.037 20.29 0.00 36.29 4.09
3850 4217 9.854668 TCTCAACTTACTAGCTCTAGTATGAAT 57.145 33.333 24.60 15.47 45.07 2.57
3852 4219 8.265764 TGTCTCAACTTACTAGCTCTAGTATGA 58.734 37.037 24.60 19.16 45.07 2.15
3853 4220 8.339714 GTGTCTCAACTTACTAGCTCTAGTATG 58.660 40.741 19.80 19.80 45.07 2.39
3854 4221 8.269317 AGTGTCTCAACTTACTAGCTCTAGTAT 58.731 37.037 15.24 2.05 45.07 2.12
3855 4222 7.622713 AGTGTCTCAACTTACTAGCTCTAGTA 58.377 38.462 11.59 11.59 43.98 1.82
3857 4224 6.995511 AGTGTCTCAACTTACTAGCTCTAG 57.004 41.667 0.00 2.55 39.04 2.43
3858 4225 9.463902 AATAAGTGTCTCAACTTACTAGCTCTA 57.536 33.333 0.00 0.00 43.53 2.43
3859 4226 7.948034 ATAAGTGTCTCAACTTACTAGCTCT 57.052 36.000 0.00 0.00 43.53 4.09
3860 4227 8.989653 AAATAAGTGTCTCAACTTACTAGCTC 57.010 34.615 0.00 0.00 43.53 4.09
3861 4228 9.209175 CAAAATAAGTGTCTCAACTTACTAGCT 57.791 33.333 0.00 0.00 43.53 3.32
3862 4229 8.443937 CCAAAATAAGTGTCTCAACTTACTAGC 58.556 37.037 0.00 0.00 43.53 3.42
3863 4230 8.936864 CCCAAAATAAGTGTCTCAACTTACTAG 58.063 37.037 0.00 0.00 43.53 2.57
3864 4231 8.653191 TCCCAAAATAAGTGTCTCAACTTACTA 58.347 33.333 0.00 0.00 43.53 1.82
3865 4232 7.444487 GTCCCAAAATAAGTGTCTCAACTTACT 59.556 37.037 0.00 0.00 43.53 2.24
3866 4233 7.570691 CGTCCCAAAATAAGTGTCTCAACTTAC 60.571 40.741 0.00 0.00 43.53 2.34
3867 4234 6.425721 CGTCCCAAAATAAGTGTCTCAACTTA 59.574 38.462 0.00 0.00 44.52 2.24
3868 4235 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3869 4236 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3870 4237 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3871 4238 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3872 4239 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3873 4240 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3874 4241 3.868754 GCTCCGTCCCAAAATAAGTGTCT 60.869 47.826 0.00 0.00 0.00 3.41
3875 4242 2.418976 GCTCCGTCCCAAAATAAGTGTC 59.581 50.000 0.00 0.00 0.00 3.67
3876 4243 2.433436 GCTCCGTCCCAAAATAAGTGT 58.567 47.619 0.00 0.00 0.00 3.55
3877 4244 1.396996 CGCTCCGTCCCAAAATAAGTG 59.603 52.381 0.00 0.00 0.00 3.16
3878 4245 1.276989 TCGCTCCGTCCCAAAATAAGT 59.723 47.619 0.00 0.00 0.00 2.24
3879 4246 1.933853 CTCGCTCCGTCCCAAAATAAG 59.066 52.381 0.00 0.00 0.00 1.73
3880 4247 1.276989 ACTCGCTCCGTCCCAAAATAA 59.723 47.619 0.00 0.00 0.00 1.40
3881 4248 0.899720 ACTCGCTCCGTCCCAAAATA 59.100 50.000 0.00 0.00 0.00 1.40
3882 4249 0.899720 TACTCGCTCCGTCCCAAAAT 59.100 50.000 0.00 0.00 0.00 1.82
3883 4250 0.037975 GTACTCGCTCCGTCCCAAAA 60.038 55.000 0.00 0.00 0.00 2.44
3884 4251 1.180456 TGTACTCGCTCCGTCCCAAA 61.180 55.000 0.00 0.00 0.00 3.28
3885 4252 1.180456 TTGTACTCGCTCCGTCCCAA 61.180 55.000 0.00 0.00 0.00 4.12
3886 4253 1.592400 CTTGTACTCGCTCCGTCCCA 61.592 60.000 0.00 0.00 0.00 4.37
3887 4254 1.139095 CTTGTACTCGCTCCGTCCC 59.861 63.158 0.00 0.00 0.00 4.46
3888 4255 0.243095 AACTTGTACTCGCTCCGTCC 59.757 55.000 0.00 0.00 0.00 4.79
3889 4256 2.061740 AAACTTGTACTCGCTCCGTC 57.938 50.000 0.00 0.00 0.00 4.79
3890 4257 2.521105 AAAACTTGTACTCGCTCCGT 57.479 45.000 0.00 0.00 0.00 4.69
3891 4258 3.829948 TCTAAAACTTGTACTCGCTCCG 58.170 45.455 0.00 0.00 0.00 4.63
3892 4259 5.408356 TGATCTAAAACTTGTACTCGCTCC 58.592 41.667 0.00 0.00 0.00 4.70
3893 4260 6.975772 AGATGATCTAAAACTTGTACTCGCTC 59.024 38.462 0.00 0.00 0.00 5.03
3894 4261 6.754209 CAGATGATCTAAAACTTGTACTCGCT 59.246 38.462 0.00 0.00 0.00 4.93
3895 4262 6.019479 CCAGATGATCTAAAACTTGTACTCGC 60.019 42.308 0.00 0.00 0.00 5.03
3896 4263 6.477033 CCCAGATGATCTAAAACTTGTACTCG 59.523 42.308 0.00 0.00 0.00 4.18
3897 4264 7.556844 TCCCAGATGATCTAAAACTTGTACTC 58.443 38.462 0.00 0.00 0.00 2.59
3898 4265 7.496346 TCCCAGATGATCTAAAACTTGTACT 57.504 36.000 0.00 0.00 0.00 2.73
3899 4266 7.169982 CGATCCCAGATGATCTAAAACTTGTAC 59.830 40.741 0.00 0.00 39.20 2.90
3900 4267 7.210174 CGATCCCAGATGATCTAAAACTTGTA 58.790 38.462 0.00 0.00 39.20 2.41
3901 4268 6.051717 CGATCCCAGATGATCTAAAACTTGT 58.948 40.000 0.00 0.00 39.20 3.16
3902 4269 5.049818 GCGATCCCAGATGATCTAAAACTTG 60.050 44.000 0.00 0.00 39.20 3.16
3903 4270 5.059833 GCGATCCCAGATGATCTAAAACTT 58.940 41.667 0.00 0.00 39.20 2.66
3904 4271 4.503991 GGCGATCCCAGATGATCTAAAACT 60.504 45.833 0.00 0.00 39.20 2.66
3905 4272 3.748568 GGCGATCCCAGATGATCTAAAAC 59.251 47.826 0.00 0.00 39.20 2.43
4082 4450 5.288804 ACTTGCAAACGCTGTAATCATTTT 58.711 33.333 0.00 0.00 0.00 1.82
4094 4462 1.641140 GGCCAAAACTTGCAAACGC 59.359 52.632 0.00 0.00 0.00 4.84
4125 4493 0.110104 CAGCCATGGATCTTCCCTCC 59.890 60.000 18.40 0.00 35.03 4.30
4164 4532 2.337879 GACACCCAGGGACAAGCACA 62.338 60.000 14.54 0.00 0.00 4.57
4257 4626 2.589540 CATGGCAGCGGGACCTAA 59.410 61.111 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.