Multiple sequence alignment - TraesCS1B01G153100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G153100 chr1B 100.000 4001 0 0 1 4001 249235317 249239317 0.000000e+00 7389
1 TraesCS1B01G153100 chr1D 95.961 3689 115 18 169 3841 179435224 179438894 0.000000e+00 5956
2 TraesCS1B01G153100 chr1D 94.798 173 8 1 1 173 179434927 179435098 6.590000e-68 268
3 TraesCS1B01G153100 chr1A 94.157 445 25 1 3558 4001 172968172 172968616 0.000000e+00 676
4 TraesCS1B01G153100 chr2D 90.036 281 25 2 3721 4001 332586476 332586753 1.060000e-95 361
5 TraesCS1B01G153100 chr2D 89.259 270 29 0 3718 3987 8384326 8384595 4.950000e-89 339
6 TraesCS1B01G153100 chrUn 89.825 285 21 5 3720 4001 93062557 93062836 3.800000e-95 359
7 TraesCS1B01G153100 chr7B 89.299 271 29 0 3731 4001 712737258 712736988 1.380000e-89 340
8 TraesCS1B01G153100 chr7B 88.930 271 28 2 3731 4001 94700528 94700796 2.300000e-87 333
9 TraesCS1B01G153100 chr7B 88.298 282 28 1 3720 4001 240925651 240925375 2.300000e-87 333
10 TraesCS1B01G153100 chr5B 88.889 270 29 1 3732 4001 112531205 112530937 8.290000e-87 331
11 TraesCS1B01G153100 chr6A 89.575 259 25 2 3731 3988 477511880 477512137 1.070000e-85 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G153100 chr1B 249235317 249239317 4000 False 7389 7389 100.0000 1 4001 1 chr1B.!!$F1 4000
1 TraesCS1B01G153100 chr1D 179434927 179438894 3967 False 3112 5956 95.3795 1 3841 2 chr1D.!!$F1 3840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 547 0.178861 AAAGAGAGGAAGGCTCCCCA 60.179 55.0 8.36 0.00 43.64 4.96 F
1116 1249 0.399833 TCCATGTGGCTGCTACAACA 59.600 50.0 22.56 11.04 34.44 3.33 F
1430 1563 0.597568 CCATTCAAGAAGGCGTGCAA 59.402 50.0 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1499 0.179026 CTAGACCTCGATCCGGACCA 60.179 60.0 6.12 0.0 0.0 4.02 R
2250 2383 0.390472 AAGCGCTCCTTTCTTCCTCG 60.390 55.0 12.06 0.0 0.0 4.63 R
3120 3256 0.464036 TGGAAGCAGTGTCGTTGTCT 59.536 50.0 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.587952 AATATTTCAAGAAAGAAAAACCCGTG 57.412 30.769 1.48 0.00 40.54 4.94
86 87 1.408340 AGCAGATGAGACACGAGGATG 59.592 52.381 0.00 0.00 0.00 3.51
97 98 1.056660 ACGAGGATGAAACTGGTGGT 58.943 50.000 0.00 0.00 0.00 4.16
161 162 5.869888 GTCAAGAAGTAACGGTGATGAAGAT 59.130 40.000 0.00 0.00 0.00 2.40
294 425 5.239744 TGCTTAAATTTCTCACCTTTACGCA 59.760 36.000 0.00 0.00 37.31 5.24
409 542 1.080329 AGAGGGAAAGAGAGGAAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
410 543 1.484653 GAGGGAAAGAGAGGAAGGCTC 59.515 57.143 0.00 0.00 0.00 4.70
412 545 0.544223 GGAAAGAGAGGAAGGCTCCC 59.456 60.000 0.00 0.00 43.64 4.30
413 546 0.544223 GAAAGAGAGGAAGGCTCCCC 59.456 60.000 0.00 0.00 43.64 4.81
414 547 0.178861 AAAGAGAGGAAGGCTCCCCA 60.179 55.000 8.36 0.00 43.64 4.96
415 548 0.912006 AAGAGAGGAAGGCTCCCCAC 60.912 60.000 8.36 2.61 43.64 4.61
416 549 1.306568 GAGAGGAAGGCTCCCCACT 60.307 63.158 8.36 7.03 43.64 4.00
417 550 1.614824 AGAGGAAGGCTCCCCACTG 60.615 63.158 8.36 0.00 43.64 3.66
418 551 1.920835 GAGGAAGGCTCCCCACTGT 60.921 63.158 8.36 0.00 43.64 3.55
428 561 0.402861 TCCCCACTGTCCCCTCTTTT 60.403 55.000 0.00 0.00 0.00 2.27
442 575 4.263949 CCCCTCTTTTCTACCAAGAACCAT 60.264 45.833 0.00 0.00 41.48 3.55
461 594 3.891366 CCATATTTCGCCCTCCAATCTTT 59.109 43.478 0.00 0.00 0.00 2.52
467 600 1.805254 CCCTCCAATCTTTGCTGCG 59.195 57.895 0.00 0.00 0.00 5.18
490 623 4.943705 GGATTCTAGCACACCTTTTGATCA 59.056 41.667 0.00 0.00 0.00 2.92
501 634 5.656416 ACACCTTTTGATCAGTTTTTCTCCA 59.344 36.000 0.00 0.00 0.00 3.86
502 635 6.183360 ACACCTTTTGATCAGTTTTTCTCCAG 60.183 38.462 0.00 0.00 0.00 3.86
524 657 3.565307 AGTCTCAGTTTGGGCAATTTGA 58.435 40.909 0.00 0.00 0.00 2.69
616 749 4.037923 TCTTGTGCCAATCTGAAAAGTTCC 59.962 41.667 0.00 0.00 0.00 3.62
895 1028 0.539438 GGCAATCCCAATCCCGCATA 60.539 55.000 0.00 0.00 0.00 3.14
945 1078 0.523072 GGTGTTGCCGAGACGTACTA 59.477 55.000 0.00 0.00 0.00 1.82
1062 1195 1.607251 CGGTTCTGGTACACCTTGTCC 60.607 57.143 0.00 0.00 36.82 4.02
1072 1205 2.264480 CCTTGTCCCGTGCGATCA 59.736 61.111 0.00 0.00 0.00 2.92
1116 1249 0.399833 TCCATGTGGCTGCTACAACA 59.600 50.000 22.56 11.04 34.44 3.33
1246 1379 1.299648 GTGTGTGCTGCCCATAGGA 59.700 57.895 0.00 0.00 33.47 2.94
1299 1432 4.581824 AGTCACAACAATCTTGCACATTCT 59.418 37.500 0.00 0.00 0.00 2.40
1366 1499 5.123979 GGCTTTGTCGATGAGGTTAATTCTT 59.876 40.000 0.00 0.00 0.00 2.52
1371 1504 4.571176 GTCGATGAGGTTAATTCTTGGTCC 59.429 45.833 0.00 0.00 0.00 4.46
1401 1534 5.725362 AGGTCTAGACAGTTATGTTCTTGC 58.275 41.667 23.91 1.87 40.68 4.01
1430 1563 0.597568 CCATTCAAGAAGGCGTGCAA 59.402 50.000 0.00 0.00 0.00 4.08
1455 1588 4.375305 GCACAAAAGCTTTATGAAACTGCG 60.375 41.667 21.67 7.69 0.00 5.18
1466 1599 3.410631 TGAAACTGCGGATGTTAAGGA 57.589 42.857 0.00 0.00 0.00 3.36
1467 1600 3.334691 TGAAACTGCGGATGTTAAGGAG 58.665 45.455 0.00 0.00 0.00 3.69
1520 1653 0.892814 AAGCAGAGGAGCCAAGTTGC 60.893 55.000 0.00 0.00 34.23 4.17
1558 1691 1.683365 CCTTCCATGCCACCCAAGG 60.683 63.158 0.00 0.00 33.58 3.61
1604 1737 7.661040 ACAGATCATTCAAAAGTTAAAGGTGG 58.339 34.615 0.00 0.00 0.00 4.61
1698 1831 6.053632 TCATTTCTGGAAATCTACTGAGCA 57.946 37.500 5.68 0.00 38.84 4.26
1771 1904 1.078918 TCAGATGCTTCACCAGGCG 60.079 57.895 2.07 0.00 0.00 5.52
1788 1921 3.059884 AGGCGCATATGAACAATCTACG 58.940 45.455 10.83 0.00 0.00 3.51
1794 1927 5.107837 CGCATATGAACAATCTACGAAGGAC 60.108 44.000 6.97 0.00 0.00 3.85
1905 2038 7.848491 ACAACAGTATTAAGAACACTTTCGTC 58.152 34.615 0.00 0.00 36.78 4.20
1906 2039 7.493320 ACAACAGTATTAAGAACACTTTCGTCA 59.507 33.333 0.00 0.00 36.78 4.35
1959 2092 1.273886 GAGATAATCTCTGCCCGGGAC 59.726 57.143 29.31 16.95 40.30 4.46
1971 2104 1.612199 GCCCGGGACAACAATTCTACA 60.612 52.381 29.31 0.00 0.00 2.74
2036 2169 4.291249 TGTAAGGGGCCTTGACTATTCTTT 59.709 41.667 0.84 0.00 37.47 2.52
2051 2184 8.088981 TGACTATTCTTTGACTGAAGGAGTAAC 58.911 37.037 0.00 0.00 33.83 2.50
2128 2261 6.207025 GCCATACCTCGAGAGAAATTACTCTA 59.793 42.308 15.71 0.00 45.69 2.43
2137 2270 7.974501 TCGAGAGAAATTACTCTATGTTGGAAC 59.025 37.037 0.00 0.00 45.69 3.62
2139 2272 7.042335 AGAGAAATTACTCTATGTTGGAACCG 58.958 38.462 0.00 0.00 44.17 4.44
2154 2287 0.953960 AACCGTCGGATGCAAACCTC 60.954 55.000 20.51 0.00 0.00 3.85
2157 2290 2.435938 TCGGATGCAAACCTCGGC 60.436 61.111 10.74 0.00 0.00 5.54
2187 2320 3.711863 AGCTGAAGGAGAGATCTCACTT 58.288 45.455 24.29 24.29 44.60 3.16
2214 2347 1.945387 TGAAGCGGCAGATTGAGATC 58.055 50.000 1.45 0.00 0.00 2.75
2271 2404 0.687354 AGGAAGAAAGGAGCGCTTCA 59.313 50.000 20.11 0.00 39.72 3.02
2331 2464 1.252904 TGCATGAGGAAAAGGCTGCC 61.253 55.000 11.65 11.65 0.00 4.85
2466 2599 2.159099 TGACATGGATGCCGAACTAGAC 60.159 50.000 0.00 0.00 0.00 2.59
2496 2629 2.662596 CTACTCCAGCACGGCCAA 59.337 61.111 2.24 0.00 33.14 4.52
2580 2713 6.071840 TGTCATTTGATGTCTTGAATGCATCA 60.072 34.615 0.00 7.43 44.72 3.07
2692 2825 7.201644 GCATTTCTACATACAAGCTTGCTTCTA 60.202 37.037 26.27 11.45 0.00 2.10
2698 2831 9.481340 CTACATACAAGCTTGCTTCTAATGATA 57.519 33.333 26.27 7.41 0.00 2.15
2702 2835 5.355350 ACAAGCTTGCTTCTAATGATACCAC 59.645 40.000 26.27 0.00 0.00 4.16
2750 2883 7.126879 TGGAGATCATATAGGGGATGAATCAAG 59.873 40.741 0.00 0.00 36.90 3.02
2803 2936 5.380043 ACAAGGATGAGTGTTCATGTTCTT 58.620 37.500 0.00 0.00 44.01 2.52
2872 3005 6.147164 TGAAATTTCACTCTTGGATACACGAC 59.853 38.462 16.91 0.00 38.34 4.34
3033 3166 5.937540 TGTTTTGTCTTGAGTTGAGAAGTCA 59.062 36.000 0.00 0.00 39.01 3.41
3056 3189 5.825593 ACCAACTCTTCTCAGTTCCATAA 57.174 39.130 0.00 0.00 34.17 1.90
3063 3196 9.525826 AACTCTTCTCAGTTCCATAATTGAAAT 57.474 29.630 0.00 0.00 31.72 2.17
3064 3197 8.954350 ACTCTTCTCAGTTCCATAATTGAAATG 58.046 33.333 0.00 0.00 38.71 2.32
3072 3208 8.084073 CAGTTCCATAATTGAAATGACACACTT 58.916 33.333 0.00 0.00 39.47 3.16
3120 3256 1.621317 TCGTGTGGAGATTTACAGCCA 59.379 47.619 0.00 0.00 0.00 4.75
3131 3267 1.860676 TTACAGCCAGACAACGACAC 58.139 50.000 0.00 0.00 0.00 3.67
3139 3275 0.464036 AGACAACGACACTGCTTCCA 59.536 50.000 0.00 0.00 0.00 3.53
3140 3276 1.134521 AGACAACGACACTGCTTCCAA 60.135 47.619 0.00 0.00 0.00 3.53
3141 3277 1.873591 GACAACGACACTGCTTCCAAT 59.126 47.619 0.00 0.00 0.00 3.16
3142 3278 2.290641 GACAACGACACTGCTTCCAATT 59.709 45.455 0.00 0.00 0.00 2.32
3153 3289 4.536489 ACTGCTTCCAATTAGTTAGTCCCT 59.464 41.667 0.00 0.00 0.00 4.20
3182 3318 5.105957 TGGCGTTGATTATAAATTGCAGTGT 60.106 36.000 0.00 0.00 0.00 3.55
3223 3359 8.867112 TTGTGTAAGATCATCCGTTATTCTAC 57.133 34.615 0.00 0.00 0.00 2.59
3230 3366 7.309177 AGATCATCCGTTATTCTACGATTCTG 58.691 38.462 0.00 0.00 43.99 3.02
3278 3421 3.243501 CCCACTGACCAAACATTCTTGTG 60.244 47.826 0.00 0.00 35.83 3.33
3279 3422 3.374745 CACTGACCAAACATTCTTGTGC 58.625 45.455 0.00 0.00 35.83 4.57
3291 3434 2.163818 TCTTGTGCTTACCTCGTTGG 57.836 50.000 0.00 0.00 42.93 3.77
3333 3476 9.486497 CACTACAGCAAATCACTGATATAGAAT 57.514 33.333 0.00 0.00 38.55 2.40
3377 3523 4.987963 ATTGATCATCTGATGGGTGCTA 57.012 40.909 17.06 0.00 34.37 3.49
3399 3545 8.079809 TGCTAAAATTAGGAGCAAGTTTGTAAC 58.920 33.333 6.42 0.00 43.03 2.50
3431 3577 1.969923 TGAAATGCTTGGGGTTCTTGG 59.030 47.619 0.00 0.00 0.00 3.61
3438 3584 2.487086 GCTTGGGGTTCTTGGCAAAAAT 60.487 45.455 0.00 0.00 0.00 1.82
3439 3585 3.244387 GCTTGGGGTTCTTGGCAAAAATA 60.244 43.478 0.00 0.00 0.00 1.40
3440 3586 4.565444 GCTTGGGGTTCTTGGCAAAAATAT 60.565 41.667 0.00 0.00 0.00 1.28
3441 3587 5.337975 GCTTGGGGTTCTTGGCAAAAATATA 60.338 40.000 0.00 0.00 0.00 0.86
3442 3588 6.632445 GCTTGGGGTTCTTGGCAAAAATATAT 60.632 38.462 0.00 0.00 0.00 0.86
3488 3634 0.675083 TTGATGCCAAACCAGTGCAG 59.325 50.000 0.00 0.00 38.58 4.41
3503 3649 1.069636 GTGCAGTCTCTTGCTTTTCCG 60.070 52.381 0.00 0.00 44.38 4.30
3668 3814 4.165779 GTCCGCATATTGTTTGGAACTTG 58.834 43.478 0.00 0.00 0.00 3.16
3703 3849 6.073440 CCTTTGGACTTCAAAAATTGCATCAG 60.073 38.462 0.00 0.00 43.88 2.90
3745 3891 3.166679 ACTCTCAGTGGGAGTAACTTCC 58.833 50.000 24.50 0.00 44.40 3.46
3749 3895 0.896940 AGTGGGAGTAACTTCCGCGA 60.897 55.000 8.23 0.00 43.96 5.87
3767 3913 3.489785 CGCGATAACATAAGGTCCAACTC 59.510 47.826 0.00 0.00 0.00 3.01
3769 3915 4.873827 GCGATAACATAAGGTCCAACTCAA 59.126 41.667 0.00 0.00 0.00 3.02
3777 3923 7.209475 ACATAAGGTCCAACTCAACAAATTTG 58.791 34.615 16.67 16.67 0.00 2.32
3799 3945 7.773864 TTGCTTATGTGGCAATGATTTAATG 57.226 32.000 0.00 0.00 43.50 1.90
3809 3955 5.472820 GGCAATGATTTAATGAGGAGAGAGG 59.527 44.000 0.00 0.00 0.00 3.69
3826 3972 7.069331 AGGAGAGAGGTGATTTGAGTAACATAG 59.931 40.741 0.00 0.00 0.00 2.23
3841 3987 5.946972 AGTAACATAGCTAGTCACTCACACT 59.053 40.000 0.00 0.00 0.00 3.55
3842 3988 7.110810 AGTAACATAGCTAGTCACTCACACTA 58.889 38.462 0.00 0.00 0.00 2.74
3843 3989 7.776030 AGTAACATAGCTAGTCACTCACACTAT 59.224 37.037 0.00 0.00 0.00 2.12
3844 3990 6.384258 ACATAGCTAGTCACTCACACTATG 57.616 41.667 0.00 11.81 39.38 2.23
3845 3991 6.122964 ACATAGCTAGTCACTCACACTATGA 58.877 40.000 17.05 0.00 37.60 2.15
3858 4004 6.339587 TCACACTATGAGTAACATCACACA 57.660 37.500 0.00 0.00 40.07 3.72
3859 4005 6.935167 TCACACTATGAGTAACATCACACAT 58.065 36.000 0.00 0.00 40.07 3.21
3860 4006 8.062065 TCACACTATGAGTAACATCACACATA 57.938 34.615 0.00 0.00 40.07 2.29
3861 4007 7.973944 TCACACTATGAGTAACATCACACATAC 59.026 37.037 0.00 0.00 40.07 2.39
3862 4008 7.222805 CACACTATGAGTAACATCACACATACC 59.777 40.741 0.00 0.00 40.07 2.73
3863 4009 7.093509 ACACTATGAGTAACATCACACATACCA 60.094 37.037 0.00 0.00 40.07 3.25
3864 4010 7.763985 CACTATGAGTAACATCACACATACCAA 59.236 37.037 0.00 0.00 40.07 3.67
3865 4011 6.985188 ATGAGTAACATCACACATACCAAC 57.015 37.500 0.00 0.00 33.46 3.77
3866 4012 5.859495 TGAGTAACATCACACATACCAACA 58.141 37.500 0.00 0.00 0.00 3.33
3867 4013 5.699001 TGAGTAACATCACACATACCAACAC 59.301 40.000 0.00 0.00 0.00 3.32
3868 4014 5.616270 AGTAACATCACACATACCAACACA 58.384 37.500 0.00 0.00 0.00 3.72
3869 4015 6.058833 AGTAACATCACACATACCAACACAA 58.941 36.000 0.00 0.00 0.00 3.33
3870 4016 5.437289 AACATCACACATACCAACACAAG 57.563 39.130 0.00 0.00 0.00 3.16
3871 4017 4.713553 ACATCACACATACCAACACAAGA 58.286 39.130 0.00 0.00 0.00 3.02
3872 4018 5.316167 ACATCACACATACCAACACAAGAT 58.684 37.500 0.00 0.00 0.00 2.40
3873 4019 5.181811 ACATCACACATACCAACACAAGATG 59.818 40.000 0.00 0.00 36.24 2.90
3874 4020 4.967036 TCACACATACCAACACAAGATGA 58.033 39.130 0.00 0.00 0.00 2.92
3875 4021 4.996758 TCACACATACCAACACAAGATGAG 59.003 41.667 0.00 0.00 0.00 2.90
3876 4022 4.756642 CACACATACCAACACAAGATGAGT 59.243 41.667 0.00 0.00 0.00 3.41
3877 4023 4.997395 ACACATACCAACACAAGATGAGTC 59.003 41.667 0.00 0.00 0.00 3.36
3878 4024 5.221722 ACACATACCAACACAAGATGAGTCT 60.222 40.000 0.00 0.00 35.82 3.24
3879 4025 6.014584 ACACATACCAACACAAGATGAGTCTA 60.015 38.462 0.00 0.00 33.30 2.59
3880 4026 6.311445 CACATACCAACACAAGATGAGTCTAC 59.689 42.308 0.00 0.00 33.30 2.59
3881 4027 4.955811 ACCAACACAAGATGAGTCTACA 57.044 40.909 0.00 0.00 33.30 2.74
3882 4028 5.290493 ACCAACACAAGATGAGTCTACAA 57.710 39.130 0.00 0.00 33.30 2.41
3883 4029 5.300752 ACCAACACAAGATGAGTCTACAAG 58.699 41.667 0.00 0.00 33.30 3.16
3884 4030 5.163301 ACCAACACAAGATGAGTCTACAAGT 60.163 40.000 0.00 0.00 33.30 3.16
3885 4031 5.760253 CCAACACAAGATGAGTCTACAAGTT 59.240 40.000 0.00 0.00 33.30 2.66
3886 4032 6.929049 CCAACACAAGATGAGTCTACAAGTTA 59.071 38.462 0.00 0.00 33.30 2.24
3887 4033 7.441157 CCAACACAAGATGAGTCTACAAGTTAA 59.559 37.037 0.00 0.00 33.30 2.01
3888 4034 8.993121 CAACACAAGATGAGTCTACAAGTTAAT 58.007 33.333 0.00 0.00 33.30 1.40
3919 4065 5.868257 GTGTTACATGACACCACACATATG 58.132 41.667 0.00 0.00 43.16 1.78
3920 4066 5.411361 GTGTTACATGACACCACACATATGT 59.589 40.000 1.41 1.41 43.16 2.29
3921 4067 6.000840 TGTTACATGACACCACACATATGTT 58.999 36.000 5.37 0.00 36.72 2.71
3922 4068 7.118535 GTGTTACATGACACCACACATATGTTA 59.881 37.037 5.37 0.00 43.16 2.41
3923 4069 7.118535 TGTTACATGACACCACACATATGTTAC 59.881 37.037 5.37 0.00 36.72 2.50
3924 4070 5.804639 ACATGACACCACACATATGTTACT 58.195 37.500 5.37 0.00 36.72 2.24
3925 4071 5.874810 ACATGACACCACACATATGTTACTC 59.125 40.000 5.37 0.00 36.72 2.59
3926 4072 4.827692 TGACACCACACATATGTTACTCC 58.172 43.478 5.37 0.00 36.72 3.85
3927 4073 4.189231 GACACCACACATATGTTACTCCC 58.811 47.826 5.37 0.00 36.72 4.30
3928 4074 3.054655 ACACCACACATATGTTACTCCCC 60.055 47.826 5.37 0.00 36.72 4.81
3929 4075 3.054728 CACCACACATATGTTACTCCCCA 60.055 47.826 5.37 0.00 36.72 4.96
3930 4076 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
3931 4077 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
3932 4078 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
3933 4079 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
3934 4080 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
3935 4081 7.378966 CACACATATGTTACTCCCCACTATAG 58.621 42.308 5.37 0.00 36.72 1.31
3936 4082 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
3937 4083 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
3938 4084 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
3939 4085 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
3940 4086 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
3941 4087 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
3942 4088 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
3943 4089 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
3944 4090 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
3945 4091 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
3946 4092 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
3947 4093 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
3948 4094 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
3949 4095 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
3950 4096 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
3951 4097 7.611079 CCCCACTATAGAGGTAGTAACATAGAC 59.389 44.444 14.29 0.00 33.29 2.59
3952 4098 8.384718 CCCACTATAGAGGTAGTAACATAGACT 58.615 40.741 14.29 0.00 33.29 3.24
3987 4133 7.769220 TGCATGTTACTAGTCTAAGTTACTCC 58.231 38.462 0.00 0.00 31.82 3.85
3988 4134 7.614583 TGCATGTTACTAGTCTAAGTTACTCCT 59.385 37.037 0.00 0.00 31.82 3.69
3989 4135 8.468399 GCATGTTACTAGTCTAAGTTACTCCTT 58.532 37.037 0.00 0.00 31.82 3.36
3996 4142 9.850198 ACTAGTCTAAGTTACTCCTTAGTATGG 57.150 37.037 7.59 0.00 42.88 2.74
3997 4143 9.287373 CTAGTCTAAGTTACTCCTTAGTATGGG 57.713 40.741 7.59 0.00 42.88 4.00
3998 4144 7.650660 AGTCTAAGTTACTCCTTAGTATGGGT 58.349 38.462 7.59 2.77 42.88 4.51
3999 4145 8.785859 AGTCTAAGTTACTCCTTAGTATGGGTA 58.214 37.037 7.59 1.94 42.88 3.69
4000 4146 9.065798 GTCTAAGTTACTCCTTAGTATGGGTAG 57.934 40.741 7.59 0.00 42.88 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.508777 CCACGGGTTTTTCTTTCTTGAAATA 58.491 36.000 0.00 0.00 36.07 1.40
6 7 4.749976 CCACGGGTTTTTCTTTCTTGAAA 58.250 39.130 0.00 0.00 34.55 2.69
12 13 0.318360 CGGCCACGGGTTTTTCTTTC 60.318 55.000 2.24 0.00 36.18 2.62
27 28 2.665008 TATCTGTCATGCTGCCGGCC 62.665 60.000 26.77 10.34 40.92 6.13
45 46 2.430248 TGTCATGGCTACTCCTCGTA 57.570 50.000 0.00 0.00 35.26 3.43
86 87 2.820197 GGATTCCTCAACCACCAGTTTC 59.180 50.000 0.00 0.00 36.18 2.78
97 98 4.289410 TCTCAACCATTCTGGATTCCTCAA 59.711 41.667 3.95 0.00 40.96 3.02
136 137 3.571571 TCATCACCGTTACTTCTTGACG 58.428 45.455 0.00 0.00 36.61 4.35
233 364 1.542030 ACGTTGCACAAAACAGGAACA 59.458 42.857 0.00 0.00 36.07 3.18
234 365 2.182014 GACGTTGCACAAAACAGGAAC 58.818 47.619 0.00 0.00 33.43 3.62
267 398 5.767816 AAAGGTGAGAAATTTAAGCACGT 57.232 34.783 9.88 8.36 0.00 4.49
294 425 5.279960 GGCATTTTCCCCTTCTAATGTTTGT 60.280 40.000 0.00 0.00 32.10 2.83
409 542 0.402861 AAAAGAGGGGACAGTGGGGA 60.403 55.000 0.00 0.00 0.00 4.81
410 543 0.038310 GAAAAGAGGGGACAGTGGGG 59.962 60.000 0.00 0.00 0.00 4.96
412 545 2.027100 GGTAGAAAAGAGGGGACAGTGG 60.027 54.545 0.00 0.00 0.00 4.00
413 546 2.637872 TGGTAGAAAAGAGGGGACAGTG 59.362 50.000 0.00 0.00 0.00 3.66
414 547 2.986050 TGGTAGAAAAGAGGGGACAGT 58.014 47.619 0.00 0.00 0.00 3.55
415 548 3.583086 TCTTGGTAGAAAAGAGGGGACAG 59.417 47.826 0.00 0.00 0.00 3.51
416 549 3.593942 TCTTGGTAGAAAAGAGGGGACA 58.406 45.455 0.00 0.00 0.00 4.02
417 550 4.325119 GTTCTTGGTAGAAAAGAGGGGAC 58.675 47.826 0.00 0.00 41.86 4.46
418 551 3.329814 GGTTCTTGGTAGAAAAGAGGGGA 59.670 47.826 0.00 0.00 41.86 4.81
428 561 4.448210 GGCGAAATATGGTTCTTGGTAGA 58.552 43.478 0.00 0.00 0.00 2.59
442 575 2.687935 GCAAAGATTGGAGGGCGAAATA 59.312 45.455 0.00 0.00 0.00 1.40
461 594 0.740868 GTGTGCTAGAATCCGCAGCA 60.741 55.000 0.00 0.00 42.77 4.41
467 600 4.943705 TGATCAAAAGGTGTGCTAGAATCC 59.056 41.667 0.00 0.00 0.00 3.01
490 623 5.622346 AACTGAGACTCTGGAGAAAAACT 57.378 39.130 13.28 0.00 0.00 2.66
501 634 3.515602 AATTGCCCAAACTGAGACTCT 57.484 42.857 3.68 0.00 0.00 3.24
502 635 3.569701 TCAAATTGCCCAAACTGAGACTC 59.430 43.478 0.00 0.00 0.00 3.36
524 657 1.332195 GAAACTTGCCCAGGAAGCTT 58.668 50.000 0.00 0.00 0.00 3.74
880 1013 3.524095 TGAAATATGCGGGATTGGGAT 57.476 42.857 0.00 0.00 0.00 3.85
890 1023 5.211454 TGACACAACTTGTTGAAATATGCG 58.789 37.500 18.82 0.00 39.17 4.73
895 1028 5.816777 CCCAAATGACACAACTTGTTGAAAT 59.183 36.000 18.82 4.90 39.17 2.17
945 1078 7.039784 TGCAACATTTAGCTTGAGAAAACCTAT 60.040 33.333 0.00 0.00 0.00 2.57
1007 1140 2.135933 GAGACCTCACACCAGTTTTCG 58.864 52.381 0.00 0.00 0.00 3.46
1062 1195 1.875813 GAGCTCACTGATCGCACGG 60.876 63.158 9.40 0.00 0.00 4.94
1072 1205 0.822811 ATGATCACGCAGAGCTCACT 59.177 50.000 17.77 0.00 32.67 3.41
1116 1249 3.025978 CAACCTTGTGGCCACATATGAT 58.974 45.455 37.97 20.59 41.52 2.45
1203 1336 1.377725 AGCGGAGAACCATGCCTTG 60.378 57.895 0.00 0.00 35.59 3.61
1246 1379 4.630644 ATGCCAAAGATGATATCTCGGT 57.369 40.909 3.98 0.00 39.08 4.69
1366 1499 0.179026 CTAGACCTCGATCCGGACCA 60.179 60.000 6.12 0.00 0.00 4.02
1371 1504 1.956297 ACTGTCTAGACCTCGATCCG 58.044 55.000 20.11 1.61 0.00 4.18
1401 1534 3.057033 CCTTCTTGAATGGCTCCAAACAG 60.057 47.826 0.00 0.00 0.00 3.16
1430 1563 4.739716 CAGTTTCATAAAGCTTTTGTGCGT 59.260 37.500 18.47 0.00 38.13 5.24
1437 1570 4.218417 ACATCCGCAGTTTCATAAAGCTTT 59.782 37.500 17.30 17.30 0.00 3.51
1455 1588 1.559682 TGTGAGGGCTCCTTAACATCC 59.440 52.381 6.61 0.00 31.76 3.51
1490 1623 2.928757 CTCCTCTGCTTGATTTCGTCTG 59.071 50.000 0.00 0.00 0.00 3.51
1491 1624 2.676463 GCTCCTCTGCTTGATTTCGTCT 60.676 50.000 0.00 0.00 0.00 4.18
1543 1676 1.228831 CAACCTTGGGTGGCATGGA 60.229 57.895 0.00 0.00 35.34 3.41
1558 1691 4.280174 TGTAGAGACCTGTTCAGGTACAAC 59.720 45.833 22.26 17.34 43.24 3.32
1604 1737 6.761714 AGTACATCAATCCAGATTCGTAAACC 59.238 38.462 0.00 0.00 0.00 3.27
1726 1859 4.656112 CCTGACTTCCTCAATACCCACTAT 59.344 45.833 0.00 0.00 0.00 2.12
1771 1904 5.753438 TGTCCTTCGTAGATTGTTCATATGC 59.247 40.000 0.00 0.00 35.04 3.14
1788 1921 3.149196 TGAAGAAGCACCATTGTCCTTC 58.851 45.455 0.00 0.00 0.00 3.46
1794 1927 3.678072 CAGCATTTGAAGAAGCACCATTG 59.322 43.478 0.00 0.00 0.00 2.82
1905 2038 2.437281 AGATGGCAGATTGACCCTACTG 59.563 50.000 0.00 0.00 0.00 2.74
1906 2039 2.703007 GAGATGGCAGATTGACCCTACT 59.297 50.000 0.00 0.00 0.00 2.57
1959 2092 8.184192 ACTTCTTGTTGAGTTGTAGAATTGTTG 58.816 33.333 0.00 0.00 0.00 3.33
1971 2104 3.378427 GTGCCTTCACTTCTTGTTGAGTT 59.622 43.478 0.00 0.00 40.03 3.01
2036 2169 6.776744 TCAGTACTAGTTACTCCTTCAGTCA 58.223 40.000 0.00 0.00 39.18 3.41
2051 2184 9.636879 CATTCTGAATCATGGTATCAGTACTAG 57.363 37.037 17.20 0.00 41.04 2.57
2128 2261 1.024579 GCATCCGACGGTTCCAACAT 61.025 55.000 14.79 0.00 0.00 2.71
2137 2270 2.452813 CGAGGTTTGCATCCGACGG 61.453 63.158 7.84 7.84 0.00 4.79
2139 2272 2.750888 GCCGAGGTTTGCATCCGAC 61.751 63.158 0.00 0.00 0.00 4.79
2154 2287 1.401931 CCTTCAGCTTCACAAATGCCG 60.402 52.381 0.00 0.00 0.00 5.69
2157 2290 4.321718 TCTCTCCTTCAGCTTCACAAATG 58.678 43.478 0.00 0.00 0.00 2.32
2187 2320 0.392706 TCTGCCGCTTCAAACTCTCA 59.607 50.000 0.00 0.00 0.00 3.27
2250 2383 0.390472 AAGCGCTCCTTTCTTCCTCG 60.390 55.000 12.06 0.00 0.00 4.63
2271 2404 1.078214 TTGGCTAGCTGCAATCGCT 60.078 52.632 15.72 4.22 45.15 4.93
2331 2464 2.635714 TGTAGTGCTTCCATCTGCATG 58.364 47.619 0.00 0.00 41.45 4.06
2466 2599 3.723554 GAGTAGCCTCCGACAACTG 57.276 57.895 0.00 0.00 0.00 3.16
2580 2713 2.768253 TGGTGCTCGTCATGAAATCT 57.232 45.000 0.00 0.00 0.00 2.40
2692 2825 7.448161 TGTCTCTTGAATGTTTGTGGTATCATT 59.552 33.333 0.00 0.00 33.95 2.57
2698 2831 5.737063 GCAATGTCTCTTGAATGTTTGTGGT 60.737 40.000 0.00 0.00 0.00 4.16
2702 2835 5.404366 CCAAGCAATGTCTCTTGAATGTTTG 59.596 40.000 3.79 0.00 41.50 2.93
2750 2883 5.693104 TGCTCAATTGATTGCTGAAAAGAAC 59.307 36.000 17.57 0.00 37.68 3.01
2823 2956 3.691609 CCTGAAGATTGTTTAGGCCACTC 59.308 47.826 5.01 0.00 0.00 3.51
2872 3005 0.914644 TCATCTTCAAGGGCCCTCAG 59.085 55.000 28.84 21.49 0.00 3.35
3033 3166 4.713792 ATGGAACTGAGAAGAGTTGGTT 57.286 40.909 0.00 0.00 36.27 3.67
3056 3189 6.643770 GCAAGATCAAAGTGTGTCATTTCAAT 59.356 34.615 0.00 0.00 0.00 2.57
3063 3196 3.213206 AGGCAAGATCAAAGTGTGTCA 57.787 42.857 0.00 0.00 0.00 3.58
3064 3197 4.574599 AAAGGCAAGATCAAAGTGTGTC 57.425 40.909 0.00 0.00 0.00 3.67
3072 3208 2.559668 CTGCTGGAAAAGGCAAGATCAA 59.440 45.455 0.00 0.00 38.02 2.57
3120 3256 0.464036 TGGAAGCAGTGTCGTTGTCT 59.536 50.000 0.00 0.00 0.00 3.41
3131 3267 4.878397 CAGGGACTAACTAATTGGAAGCAG 59.122 45.833 0.00 0.00 36.02 4.24
3139 3275 4.683400 CGCCACATCAGGGACTAACTAATT 60.683 45.833 0.00 0.00 36.02 1.40
3140 3276 3.181465 CGCCACATCAGGGACTAACTAAT 60.181 47.826 0.00 0.00 36.02 1.73
3141 3277 2.167693 CGCCACATCAGGGACTAACTAA 59.832 50.000 0.00 0.00 36.02 2.24
3142 3278 1.754803 CGCCACATCAGGGACTAACTA 59.245 52.381 0.00 0.00 36.02 2.24
3153 3289 5.976534 GCAATTTATAATCAACGCCACATCA 59.023 36.000 0.00 0.00 0.00 3.07
3191 3327 3.629398 GGATGATCTTACACAAGCTTGGG 59.371 47.826 27.12 27.12 37.67 4.12
3223 3359 4.297510 CAGAGTTAGCCAGATCAGAATCG 58.702 47.826 0.00 0.00 36.97 3.34
3230 3366 2.103941 CCCTTCCAGAGTTAGCCAGATC 59.896 54.545 0.00 0.00 0.00 2.75
3377 3523 8.007405 ACAGTTACAAACTTGCTCCTAATTTT 57.993 30.769 0.00 0.00 40.46 1.82
3392 3538 7.807433 GCATTTCATCACATGTACAGTTACAAA 59.193 33.333 0.00 0.00 41.64 2.83
3399 3545 5.337554 CCAAGCATTTCATCACATGTACAG 58.662 41.667 0.00 0.00 0.00 2.74
3463 3609 3.056393 CACTGGTTTGGCATCAACATCAT 60.056 43.478 4.59 0.00 31.78 2.45
3488 3634 5.408604 TCTTAACATCGGAAAAGCAAGAGAC 59.591 40.000 0.00 0.00 0.00 3.36
3503 3649 7.440523 AGTTTGAGGACACAATCTTAACATC 57.559 36.000 0.00 0.00 0.00 3.06
3598 3744 6.035368 TGGATATGGTTTGTTGAATGTTGG 57.965 37.500 0.00 0.00 0.00 3.77
3599 3745 6.927936 TGTTGGATATGGTTTGTTGAATGTTG 59.072 34.615 0.00 0.00 0.00 3.33
3668 3814 3.569701 TGAAGTCCAAAGGCATGAAGAAC 59.430 43.478 0.00 0.00 0.00 3.01
3724 3870 3.166679 GGAAGTTACTCCCACTGAGAGT 58.833 50.000 0.00 0.00 44.42 3.24
3726 3872 2.168496 CGGAAGTTACTCCCACTGAGA 58.832 52.381 0.00 0.00 44.42 3.27
3728 3874 0.606604 GCGGAAGTTACTCCCACTGA 59.393 55.000 0.00 0.00 31.03 3.41
3729 3875 0.736325 CGCGGAAGTTACTCCCACTG 60.736 60.000 0.00 0.00 31.03 3.66
3745 3891 3.454375 AGTTGGACCTTATGTTATCGCG 58.546 45.455 0.00 0.00 0.00 5.87
3749 3895 8.650143 ATTTGTTGAGTTGGACCTTATGTTAT 57.350 30.769 0.00 0.00 0.00 1.89
3767 3913 5.670149 TTGCCACATAAGCAAATTTGTTG 57.330 34.783 19.03 13.45 46.71 3.33
3777 3923 6.643770 CCTCATTAAATCATTGCCACATAAGC 59.356 38.462 0.00 0.00 0.00 3.09
3799 3945 5.186021 TGTTACTCAAATCACCTCTCTCCTC 59.814 44.000 0.00 0.00 0.00 3.71
3809 3955 7.976734 AGTGACTAGCTATGTTACTCAAATCAC 59.023 37.037 12.07 0.00 30.05 3.06
3841 3987 7.547722 GTGTTGGTATGTGTGATGTTACTCATA 59.452 37.037 0.00 0.00 36.51 2.15
3842 3988 6.371548 GTGTTGGTATGTGTGATGTTACTCAT 59.628 38.462 0.00 0.00 38.11 2.90
3843 3989 5.699001 GTGTTGGTATGTGTGATGTTACTCA 59.301 40.000 0.00 0.00 0.00 3.41
3844 3990 5.699001 TGTGTTGGTATGTGTGATGTTACTC 59.301 40.000 0.00 0.00 0.00 2.59
3845 3991 5.616270 TGTGTTGGTATGTGTGATGTTACT 58.384 37.500 0.00 0.00 0.00 2.24
3846 3992 5.933187 TGTGTTGGTATGTGTGATGTTAC 57.067 39.130 0.00 0.00 0.00 2.50
3847 3993 6.292150 TCTTGTGTTGGTATGTGTGATGTTA 58.708 36.000 0.00 0.00 0.00 2.41
3848 3994 5.129634 TCTTGTGTTGGTATGTGTGATGTT 58.870 37.500 0.00 0.00 0.00 2.71
3849 3995 4.713553 TCTTGTGTTGGTATGTGTGATGT 58.286 39.130 0.00 0.00 0.00 3.06
3850 3996 5.412286 TCATCTTGTGTTGGTATGTGTGATG 59.588 40.000 0.00 0.00 0.00 3.07
3851 3997 5.559770 TCATCTTGTGTTGGTATGTGTGAT 58.440 37.500 0.00 0.00 0.00 3.06
3852 3998 4.967036 TCATCTTGTGTTGGTATGTGTGA 58.033 39.130 0.00 0.00 0.00 3.58
3853 3999 4.756642 ACTCATCTTGTGTTGGTATGTGTG 59.243 41.667 0.00 0.00 0.00 3.82
3854 4000 4.973168 ACTCATCTTGTGTTGGTATGTGT 58.027 39.130 0.00 0.00 0.00 3.72
3855 4001 5.240891 AGACTCATCTTGTGTTGGTATGTG 58.759 41.667 0.00 0.00 0.00 3.21
3856 4002 5.489792 AGACTCATCTTGTGTTGGTATGT 57.510 39.130 0.00 0.00 0.00 2.29
3857 4003 6.398095 TGTAGACTCATCTTGTGTTGGTATG 58.602 40.000 0.00 0.00 36.29 2.39
3858 4004 6.605471 TGTAGACTCATCTTGTGTTGGTAT 57.395 37.500 0.00 0.00 36.29 2.73
3859 4005 6.041637 ACTTGTAGACTCATCTTGTGTTGGTA 59.958 38.462 0.00 0.00 36.29 3.25
3860 4006 4.955811 TGTAGACTCATCTTGTGTTGGT 57.044 40.909 0.00 0.00 36.29 3.67
3861 4007 5.300752 ACTTGTAGACTCATCTTGTGTTGG 58.699 41.667 0.00 0.00 36.29 3.77
3862 4008 6.851222 AACTTGTAGACTCATCTTGTGTTG 57.149 37.500 0.00 0.00 36.29 3.33
3887 4033 9.290988 TGTGGTGTCATGTAACACTTTATTTAT 57.709 29.630 15.09 0.00 46.96 1.40
3888 4034 8.561212 GTGTGGTGTCATGTAACACTTTATTTA 58.439 33.333 15.09 0.00 46.96 1.40
3889 4035 7.067615 TGTGTGGTGTCATGTAACACTTTATTT 59.932 33.333 15.09 0.00 46.96 1.40
3890 4036 6.544197 TGTGTGGTGTCATGTAACACTTTATT 59.456 34.615 15.09 0.00 46.96 1.40
3891 4037 6.058833 TGTGTGGTGTCATGTAACACTTTAT 58.941 36.000 15.09 0.00 46.96 1.40
3892 4038 5.429130 TGTGTGGTGTCATGTAACACTTTA 58.571 37.500 15.09 2.94 46.96 1.85
3893 4039 4.265893 TGTGTGGTGTCATGTAACACTTT 58.734 39.130 15.09 0.00 46.96 2.66
3894 4040 3.879998 TGTGTGGTGTCATGTAACACTT 58.120 40.909 15.09 0.00 46.96 3.16
3895 4041 3.552132 TGTGTGGTGTCATGTAACACT 57.448 42.857 15.09 0.00 46.96 3.55
3896 4042 6.072728 AACATATGTGTGGTGTCATGTAACAC 60.073 38.462 9.63 8.76 42.28 3.32
3897 4043 5.555966 ACATATGTGTGGTGTCATGTAACA 58.444 37.500 7.78 0.00 37.14 2.41
3898 4044 6.494893 AACATATGTGTGGTGTCATGTAAC 57.505 37.500 9.63 0.00 38.92 2.50
3899 4045 7.390823 AGTAACATATGTGTGGTGTCATGTAA 58.609 34.615 9.63 0.00 38.92 2.41
3900 4046 6.941857 AGTAACATATGTGTGGTGTCATGTA 58.058 36.000 9.63 0.00 38.92 2.29
3901 4047 5.804639 AGTAACATATGTGTGGTGTCATGT 58.195 37.500 9.63 0.00 38.92 3.21
3902 4048 5.294306 GGAGTAACATATGTGTGGTGTCATG 59.706 44.000 9.63 0.00 38.92 3.07
3903 4049 5.428253 GGAGTAACATATGTGTGGTGTCAT 58.572 41.667 9.63 0.00 38.92 3.06
3904 4050 4.323180 GGGAGTAACATATGTGTGGTGTCA 60.323 45.833 9.63 0.00 38.92 3.58
3905 4051 4.189231 GGGAGTAACATATGTGTGGTGTC 58.811 47.826 9.63 1.25 38.92 3.67
3906 4052 3.054655 GGGGAGTAACATATGTGTGGTGT 60.055 47.826 9.63 0.00 38.92 4.16
3907 4053 3.054728 TGGGGAGTAACATATGTGTGGTG 60.055 47.826 9.63 0.00 38.92 4.17
3908 4054 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
3909 4055 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
3910 4056 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
3911 4057 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
3912 4058 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
3913 4059 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
3914 4060 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
3915 4061 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
3916 4062 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
3917 4063 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
3918 4064 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
3919 4065 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
3920 4066 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
3921 4067 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
3922 4068 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
3923 4069 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
3924 4070 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
3925 4071 7.611079 GTCTATGTTACTACCTCTATAGTGGGG 59.389 44.444 21.82 16.35 36.09 4.96
3926 4072 8.384718 AGTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
3961 4107 8.414778 GGAGTAACTTAGACTAGTAACATGCAT 58.585 37.037 0.00 0.00 0.00 3.96
3962 4108 7.614583 AGGAGTAACTTAGACTAGTAACATGCA 59.385 37.037 0.00 0.00 0.00 3.96
3963 4109 7.998580 AGGAGTAACTTAGACTAGTAACATGC 58.001 38.462 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.