Multiple sequence alignment - TraesCS1B01G151200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G151200 chr1B 100.000 3511 0 0 1 3511 236952231 236955741 0.000000e+00 6484.0
1 TraesCS1B01G151200 chr1B 94.444 90 4 1 2825 2914 236954969 236955057 1.700000e-28 137.0
2 TraesCS1B01G151200 chr1B 94.444 90 4 1 2739 2827 236955055 236955144 1.700000e-28 137.0
3 TraesCS1B01G151200 chr1D 92.111 2459 72 32 427 2827 155738112 155735718 0.000000e+00 3354.0
4 TraesCS1B01G151200 chr1D 89.500 200 16 3 2825 3020 155735811 155735613 7.530000e-62 248.0
5 TraesCS1B01G151200 chr1D 90.370 135 11 1 3092 3224 155735487 155735353 3.600000e-40 176.0
6 TraesCS1B01G151200 chr1A 92.677 2185 65 24 427 2588 185116638 185118750 0.000000e+00 3061.0
7 TraesCS1B01G151200 chr1A 86.283 452 30 9 3050 3490 185119124 185119554 2.470000e-126 462.0
8 TraesCS1B01G151200 chr1A 91.353 266 10 5 2575 2827 185118767 185119032 5.580000e-93 351.0
9 TraesCS1B01G151200 chr1A 91.111 135 8 1 2825 2955 185118939 185119073 2.780000e-41 180.0
10 TraesCS1B01G151200 chr3B 94.915 413 19 1 1 413 673839824 673840234 0.000000e+00 645.0
11 TraesCS1B01G151200 chr3B 93.711 159 10 0 255 413 673837909 673838067 4.530000e-59 239.0
12 TraesCS1B01G151200 chr3B 83.071 254 37 6 3 253 617989522 617989272 3.530000e-55 226.0
13 TraesCS1B01G151200 chr3B 81.513 119 18 3 1548 1665 540455560 540455445 1.040000e-15 95.3
14 TraesCS1B01G151200 chr3B 92.857 42 2 1 3227 3267 381602036 381602077 3.780000e-05 60.2
15 TraesCS1B01G151200 chr7A 92.271 414 29 2 1 413 538836724 538837135 5.050000e-163 584.0
16 TraesCS1B01G151200 chr7A 85.285 333 44 4 1 331 706256910 706257239 4.340000e-89 339.0
17 TraesCS1B01G151200 chr7A 82.400 250 44 0 6 255 198799059 198799308 5.900000e-53 219.0
18 TraesCS1B01G151200 chr7D 92.271 414 26 5 1 411 631468420 631468830 1.820000e-162 582.0
19 TraesCS1B01G151200 chr7B 82.213 253 41 4 3 253 696369688 696369938 7.630000e-52 215.0
20 TraesCS1B01G151200 chr4A 81.298 262 42 7 3 261 688661712 688661969 4.590000e-49 206.0
21 TraesCS1B01G151200 chr6B 76.577 222 43 6 44 261 29740389 29740173 2.860000e-21 113.0
22 TraesCS1B01G151200 chr3D 78.710 155 24 7 1548 1700 414628033 414627886 1.040000e-15 95.3
23 TraesCS1B01G151200 chr3A 78.710 155 24 7 1548 1700 535825154 535825301 1.040000e-15 95.3
24 TraesCS1B01G151200 chr5A 84.043 94 15 0 2838 2931 438985303 438985396 1.340000e-14 91.6
25 TraesCS1B01G151200 chr5A 82.979 94 16 0 2838 2931 439062030 439062123 6.240000e-13 86.1
26 TraesCS1B01G151200 chr4B 100.000 34 0 0 3230 3263 602048713 602048680 2.930000e-06 63.9
27 TraesCS1B01G151200 chr5B 90.909 44 2 2 3233 3275 580928629 580928587 1.360000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G151200 chr1B 236952231 236955741 3510 False 2252.666667 6484 96.296000 1 3511 3 chr1B.!!$F1 3510
1 TraesCS1B01G151200 chr1D 155735353 155738112 2759 True 1259.333333 3354 90.660333 427 3224 3 chr1D.!!$R1 2797
2 TraesCS1B01G151200 chr1A 185116638 185119554 2916 False 1013.500000 3061 90.356000 427 3490 4 chr1A.!!$F1 3063
3 TraesCS1B01G151200 chr3B 673837909 673840234 2325 False 442.000000 645 94.313000 1 413 2 chr3B.!!$F2 412

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 2257 0.032815 GGATCTGAGCTTACTCCGGC 59.967 60.0 0.0 0.0 42.74 6.13 F
1269 3196 0.033504 GACGTGACAGCAAGGAGGAA 59.966 55.0 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 4306 0.811616 CTGTCATAGGCGGCCTTGAC 60.812 60.0 33.52 33.52 39.61 3.18 R
2910 4925 0.107654 GAGATTGGGCTAGGCGTGTT 60.108 55.0 10.58 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 1956 0.835971 TCAGTGCCTCCTACCTTGCA 60.836 55.000 0.00 0.00 0.00 4.08
112 2028 2.047655 GTTCGGGATCGTGTGGCA 60.048 61.111 0.00 0.00 37.69 4.92
133 2049 2.295349 ACTTGGCGAAGTTCGAGTCTTA 59.705 45.455 28.66 6.18 43.74 2.10
142 2058 2.299013 AGTTCGAGTCTTACATGTGCCA 59.701 45.455 9.11 0.00 0.00 4.92
143 2059 3.055819 AGTTCGAGTCTTACATGTGCCAT 60.056 43.478 9.11 0.00 0.00 4.40
144 2060 3.165058 TCGAGTCTTACATGTGCCATC 57.835 47.619 9.11 0.00 0.00 3.51
145 2061 2.159099 TCGAGTCTTACATGTGCCATCC 60.159 50.000 9.11 0.00 0.00 3.51
146 2062 2.418609 CGAGTCTTACATGTGCCATCCA 60.419 50.000 9.11 0.00 0.00 3.41
147 2063 3.201290 GAGTCTTACATGTGCCATCCAG 58.799 50.000 9.11 0.00 0.00 3.86
148 2064 2.573462 AGTCTTACATGTGCCATCCAGT 59.427 45.455 9.11 0.00 0.00 4.00
149 2065 3.009473 AGTCTTACATGTGCCATCCAGTT 59.991 43.478 9.11 0.00 0.00 3.16
150 2066 3.375299 GTCTTACATGTGCCATCCAGTTC 59.625 47.826 9.11 0.00 0.00 3.01
151 2067 2.022764 TACATGTGCCATCCAGTTCG 57.977 50.000 9.11 0.00 0.00 3.95
152 2068 1.308069 ACATGTGCCATCCAGTTCGC 61.308 55.000 0.00 0.00 0.00 4.70
153 2069 1.002257 ATGTGCCATCCAGTTCGCA 60.002 52.632 0.00 0.00 0.00 5.10
154 2070 1.028330 ATGTGCCATCCAGTTCGCAG 61.028 55.000 0.00 0.00 0.00 5.18
155 2071 1.672356 GTGCCATCCAGTTCGCAGT 60.672 57.895 0.00 0.00 0.00 4.40
156 2072 0.391130 GTGCCATCCAGTTCGCAGTA 60.391 55.000 0.00 0.00 0.00 2.74
157 2073 0.541392 TGCCATCCAGTTCGCAGTAT 59.459 50.000 0.00 0.00 0.00 2.12
158 2074 0.940126 GCCATCCAGTTCGCAGTATG 59.060 55.000 0.00 0.00 40.87 2.39
172 2088 2.205074 CAGTATGCCGACATCTTCACC 58.795 52.381 0.00 0.00 37.74 4.02
173 2089 1.831106 AGTATGCCGACATCTTCACCA 59.169 47.619 0.00 0.00 37.74 4.17
174 2090 2.236146 AGTATGCCGACATCTTCACCAA 59.764 45.455 0.00 0.00 37.74 3.67
175 2091 1.742761 ATGCCGACATCTTCACCAAG 58.257 50.000 0.00 0.00 0.00 3.61
176 2092 0.321564 TGCCGACATCTTCACCAAGG 60.322 55.000 0.00 0.00 0.00 3.61
177 2093 1.026718 GCCGACATCTTCACCAAGGG 61.027 60.000 0.00 0.00 0.00 3.95
178 2094 0.613260 CCGACATCTTCACCAAGGGA 59.387 55.000 0.00 0.00 0.00 4.20
179 2095 1.676014 CCGACATCTTCACCAAGGGAC 60.676 57.143 0.00 0.00 0.00 4.46
181 2097 2.704572 GACATCTTCACCAAGGGACTG 58.295 52.381 0.00 0.00 40.86 3.51
182 2098 1.271597 ACATCTTCACCAAGGGACTGC 60.272 52.381 0.00 0.00 40.86 4.40
183 2099 0.329596 ATCTTCACCAAGGGACTGCC 59.670 55.000 0.00 0.00 40.86 4.85
193 2109 4.459089 GGACTGCCCTCGCCAGTC 62.459 72.222 11.90 11.90 39.97 3.51
194 2110 3.386237 GACTGCCCTCGCCAGTCT 61.386 66.667 12.80 0.00 38.77 3.24
195 2111 2.925170 ACTGCCCTCGCCAGTCTT 60.925 61.111 0.00 0.00 0.00 3.01
196 2112 2.125350 CTGCCCTCGCCAGTCTTC 60.125 66.667 0.00 0.00 0.00 2.87
197 2113 2.922503 TGCCCTCGCCAGTCTTCA 60.923 61.111 0.00 0.00 0.00 3.02
198 2114 2.435059 GCCCTCGCCAGTCTTCAC 60.435 66.667 0.00 0.00 0.00 3.18
199 2115 2.948720 GCCCTCGCCAGTCTTCACT 61.949 63.158 0.00 0.00 0.00 3.41
211 2127 4.181309 AGTCTTCACTGAGTTTCGATCC 57.819 45.455 0.00 0.00 0.00 3.36
212 2128 3.574396 AGTCTTCACTGAGTTTCGATCCA 59.426 43.478 0.00 0.00 0.00 3.41
213 2129 3.923461 GTCTTCACTGAGTTTCGATCCAG 59.077 47.826 0.00 0.00 0.00 3.86
214 2130 2.370281 TCACTGAGTTTCGATCCAGC 57.630 50.000 0.00 0.00 0.00 4.85
215 2131 1.066858 TCACTGAGTTTCGATCCAGCC 60.067 52.381 0.00 0.00 0.00 4.85
216 2132 1.066573 CACTGAGTTTCGATCCAGCCT 60.067 52.381 0.00 0.00 0.00 4.58
217 2133 1.066573 ACTGAGTTTCGATCCAGCCTG 60.067 52.381 0.00 0.00 0.00 4.85
218 2134 1.205655 CTGAGTTTCGATCCAGCCTGA 59.794 52.381 0.00 0.00 0.00 3.86
219 2135 1.623311 TGAGTTTCGATCCAGCCTGAA 59.377 47.619 0.00 0.00 0.00 3.02
220 2136 2.003301 GAGTTTCGATCCAGCCTGAAC 58.997 52.381 0.00 0.00 0.00 3.18
221 2137 1.347707 AGTTTCGATCCAGCCTGAACA 59.652 47.619 0.00 0.00 0.00 3.18
222 2138 2.026822 AGTTTCGATCCAGCCTGAACAT 60.027 45.455 0.00 0.00 0.00 2.71
223 2139 2.315925 TTCGATCCAGCCTGAACATC 57.684 50.000 0.00 0.00 0.00 3.06
224 2140 0.465705 TCGATCCAGCCTGAACATCC 59.534 55.000 0.00 0.00 0.00 3.51
225 2141 0.467384 CGATCCAGCCTGAACATCCT 59.533 55.000 0.00 0.00 0.00 3.24
226 2142 1.134280 CGATCCAGCCTGAACATCCTT 60.134 52.381 0.00 0.00 0.00 3.36
227 2143 2.570135 GATCCAGCCTGAACATCCTTC 58.430 52.381 0.00 0.00 0.00 3.46
228 2144 0.620556 TCCAGCCTGAACATCCTTCC 59.379 55.000 0.00 0.00 0.00 3.46
229 2145 0.394899 CCAGCCTGAACATCCTTCCC 60.395 60.000 0.00 0.00 0.00 3.97
230 2146 0.329261 CAGCCTGAACATCCTTCCCA 59.671 55.000 0.00 0.00 0.00 4.37
231 2147 1.075601 AGCCTGAACATCCTTCCCAA 58.924 50.000 0.00 0.00 0.00 4.12
232 2148 1.642762 AGCCTGAACATCCTTCCCAAT 59.357 47.619 0.00 0.00 0.00 3.16
233 2149 1.753073 GCCTGAACATCCTTCCCAATG 59.247 52.381 0.00 0.00 0.00 2.82
234 2150 2.381911 CCTGAACATCCTTCCCAATGG 58.618 52.381 0.00 0.00 0.00 3.16
235 2151 2.025037 CCTGAACATCCTTCCCAATGGA 60.025 50.000 0.00 0.00 39.54 3.41
236 2152 3.285484 CTGAACATCCTTCCCAATGGAG 58.715 50.000 0.00 0.00 43.07 3.86
237 2153 2.649312 TGAACATCCTTCCCAATGGAGT 59.351 45.455 0.00 0.00 43.07 3.85
238 2154 3.075882 TGAACATCCTTCCCAATGGAGTT 59.924 43.478 0.00 0.00 43.07 3.01
239 2155 3.372440 ACATCCTTCCCAATGGAGTTC 57.628 47.619 0.00 0.00 43.07 3.01
240 2156 2.024941 ACATCCTTCCCAATGGAGTTCC 60.025 50.000 0.00 0.00 43.07 3.62
241 2157 0.618458 TCCTTCCCAATGGAGTTCCG 59.382 55.000 0.00 0.00 43.07 4.30
242 2158 0.394352 CCTTCCCAATGGAGTTCCGG 60.394 60.000 0.00 0.00 43.07 5.14
243 2159 1.001393 TTCCCAATGGAGTTCCGGC 60.001 57.895 0.00 0.00 43.07 6.13
244 2160 2.813226 TTCCCAATGGAGTTCCGGCG 62.813 60.000 0.00 0.00 43.07 6.46
245 2161 2.824041 CCAATGGAGTTCCGGCGG 60.824 66.667 22.51 22.51 39.43 6.13
246 2162 2.267642 CAATGGAGTTCCGGCGGA 59.732 61.111 27.46 27.46 39.43 5.54
247 2163 1.815421 CAATGGAGTTCCGGCGGAG 60.815 63.158 29.30 11.06 39.43 4.63
248 2164 3.031417 AATGGAGTTCCGGCGGAGG 62.031 63.158 29.30 1.23 39.43 4.30
272 2188 5.112129 GGGGGTGTTGAGTTGTATATTCT 57.888 43.478 0.00 0.00 0.00 2.40
273 2189 4.881850 GGGGGTGTTGAGTTGTATATTCTG 59.118 45.833 0.00 0.00 0.00 3.02
274 2190 5.497474 GGGGTGTTGAGTTGTATATTCTGT 58.503 41.667 0.00 0.00 0.00 3.41
275 2191 6.352394 GGGGGTGTTGAGTTGTATATTCTGTA 60.352 42.308 0.00 0.00 0.00 2.74
276 2192 6.537660 GGGGTGTTGAGTTGTATATTCTGTAC 59.462 42.308 0.00 0.00 0.00 2.90
277 2193 7.101054 GGGTGTTGAGTTGTATATTCTGTACA 58.899 38.462 0.00 0.00 0.00 2.90
278 2194 7.769044 GGGTGTTGAGTTGTATATTCTGTACAT 59.231 37.037 0.00 0.00 32.56 2.29
279 2195 9.162764 GGTGTTGAGTTGTATATTCTGTACATT 57.837 33.333 0.00 0.00 32.56 2.71
300 2216 7.599054 CATTATGTAATGTTGCATTGTCTCG 57.401 36.000 1.77 0.00 38.53 4.04
301 2217 4.621068 ATGTAATGTTGCATTGTCTCGG 57.379 40.909 4.78 0.00 28.76 4.63
302 2218 3.407698 TGTAATGTTGCATTGTCTCGGT 58.592 40.909 4.78 0.00 0.00 4.69
303 2219 2.995466 AATGTTGCATTGTCTCGGTG 57.005 45.000 0.00 0.00 0.00 4.94
304 2220 1.896220 ATGTTGCATTGTCTCGGTGT 58.104 45.000 0.00 0.00 0.00 4.16
305 2221 2.535012 TGTTGCATTGTCTCGGTGTA 57.465 45.000 0.00 0.00 0.00 2.90
306 2222 2.139917 TGTTGCATTGTCTCGGTGTAC 58.860 47.619 0.00 0.00 0.00 2.90
307 2223 1.463444 GTTGCATTGTCTCGGTGTACC 59.537 52.381 0.00 0.00 0.00 3.34
322 2238 5.373981 GGTGTACCGATCCTAGATTGTAG 57.626 47.826 0.00 0.00 0.00 2.74
323 2239 4.217983 GGTGTACCGATCCTAGATTGTAGG 59.782 50.000 0.31 0.31 36.06 3.18
324 2240 5.068636 GTGTACCGATCCTAGATTGTAGGA 58.931 45.833 11.68 11.68 46.65 2.94
332 2248 5.332106 TCCTAGATTGTAGGATCTGAGCT 57.668 43.478 5.49 0.00 38.71 4.09
333 2249 5.710646 TCCTAGATTGTAGGATCTGAGCTT 58.289 41.667 5.49 0.00 38.71 3.74
334 2250 6.853490 TCCTAGATTGTAGGATCTGAGCTTA 58.147 40.000 5.49 0.00 38.71 3.09
335 2251 6.717540 TCCTAGATTGTAGGATCTGAGCTTAC 59.282 42.308 5.49 8.09 38.71 2.34
336 2252 6.719370 CCTAGATTGTAGGATCTGAGCTTACT 59.281 42.308 14.84 0.00 37.01 2.24
337 2253 6.648879 AGATTGTAGGATCTGAGCTTACTC 57.351 41.667 14.84 6.56 43.76 2.59
338 2254 5.538433 AGATTGTAGGATCTGAGCTTACTCC 59.462 44.000 14.84 1.17 42.74 3.85
339 2255 3.215151 TGTAGGATCTGAGCTTACTCCG 58.785 50.000 14.84 0.00 42.74 4.63
340 2256 1.698506 AGGATCTGAGCTTACTCCGG 58.301 55.000 0.00 0.00 42.74 5.14
341 2257 0.032815 GGATCTGAGCTTACTCCGGC 59.967 60.000 0.00 0.00 42.74 6.13
342 2258 0.747255 GATCTGAGCTTACTCCGGCA 59.253 55.000 0.00 0.00 42.74 5.69
343 2259 1.342819 GATCTGAGCTTACTCCGGCAT 59.657 52.381 0.00 0.00 42.74 4.40
344 2260 0.461548 TCTGAGCTTACTCCGGCATG 59.538 55.000 0.00 0.00 42.74 4.06
345 2261 0.531532 CTGAGCTTACTCCGGCATGG 60.532 60.000 0.00 0.00 42.74 3.66
346 2262 1.889573 GAGCTTACTCCGGCATGGC 60.890 63.158 9.69 9.69 36.90 4.40
347 2263 2.902343 GCTTACTCCGGCATGGCC 60.902 66.667 14.46 0.00 46.75 5.36
362 2278 2.266055 GCCTGCGTGCCTAACTCT 59.734 61.111 0.00 0.00 0.00 3.24
363 2279 1.811679 GCCTGCGTGCCTAACTCTC 60.812 63.158 0.00 0.00 0.00 3.20
364 2280 1.517257 CCTGCGTGCCTAACTCTCG 60.517 63.158 0.00 0.00 0.00 4.04
365 2281 1.517257 CTGCGTGCCTAACTCTCGG 60.517 63.158 0.00 0.00 0.00 4.63
366 2282 2.202756 GCGTGCCTAACTCTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
367 2283 2.707849 GCGTGCCTAACTCTCGGGA 61.708 63.158 0.00 0.00 0.00 5.14
368 2284 1.433879 CGTGCCTAACTCTCGGGAG 59.566 63.158 11.78 11.78 44.62 4.30
387 2303 4.164843 GAGTCTCTCTCCCACTCTATGT 57.835 50.000 0.00 0.00 37.22 2.29
388 2304 5.298989 GAGTCTCTCTCCCACTCTATGTA 57.701 47.826 0.00 0.00 37.22 2.29
389 2305 5.686753 GAGTCTCTCTCCCACTCTATGTAA 58.313 45.833 0.00 0.00 37.22 2.41
390 2306 6.080969 AGTCTCTCTCCCACTCTATGTAAA 57.919 41.667 0.00 0.00 0.00 2.01
391 2307 5.889289 AGTCTCTCTCCCACTCTATGTAAAC 59.111 44.000 0.00 0.00 0.00 2.01
392 2308 5.889289 GTCTCTCTCCCACTCTATGTAAACT 59.111 44.000 0.00 0.00 0.00 2.66
393 2309 6.038936 GTCTCTCTCCCACTCTATGTAAACTC 59.961 46.154 0.00 0.00 0.00 3.01
394 2310 5.827756 TCTCTCCCACTCTATGTAAACTCA 58.172 41.667 0.00 0.00 0.00 3.41
395 2311 5.888724 TCTCTCCCACTCTATGTAAACTCAG 59.111 44.000 0.00 0.00 0.00 3.35
396 2312 4.956700 TCTCCCACTCTATGTAAACTCAGG 59.043 45.833 0.00 0.00 0.00 3.86
397 2313 4.684724 TCCCACTCTATGTAAACTCAGGT 58.315 43.478 0.00 0.00 0.00 4.00
398 2314 5.091552 TCCCACTCTATGTAAACTCAGGTT 58.908 41.667 0.00 0.00 37.24 3.50
399 2315 5.046591 TCCCACTCTATGTAAACTCAGGTTG 60.047 44.000 0.00 0.00 35.63 3.77
400 2316 5.280011 CCCACTCTATGTAAACTCAGGTTGT 60.280 44.000 0.00 0.00 35.63 3.32
401 2317 6.070995 CCCACTCTATGTAAACTCAGGTTGTA 60.071 42.308 0.00 0.00 35.63 2.41
402 2318 7.383687 CCACTCTATGTAAACTCAGGTTGTAA 58.616 38.462 0.00 0.00 35.63 2.41
403 2319 7.331193 CCACTCTATGTAAACTCAGGTTGTAAC 59.669 40.741 0.00 0.00 35.63 2.50
404 2320 7.870954 CACTCTATGTAAACTCAGGTTGTAACA 59.129 37.037 0.00 0.00 35.63 2.41
405 2321 8.088981 ACTCTATGTAAACTCAGGTTGTAACAG 58.911 37.037 0.00 0.00 35.63 3.16
406 2322 8.185506 TCTATGTAAACTCAGGTTGTAACAGA 57.814 34.615 0.00 0.00 35.63 3.41
407 2323 8.644216 TCTATGTAAACTCAGGTTGTAACAGAA 58.356 33.333 0.00 0.00 35.63 3.02
408 2324 9.268268 CTATGTAAACTCAGGTTGTAACAGAAA 57.732 33.333 0.00 0.00 35.63 2.52
409 2325 7.311364 TGTAAACTCAGGTTGTAACAGAAAC 57.689 36.000 0.00 0.00 35.63 2.78
410 2326 6.879993 TGTAAACTCAGGTTGTAACAGAAACA 59.120 34.615 0.00 0.00 35.63 2.83
411 2327 5.813080 AACTCAGGTTGTAACAGAAACAC 57.187 39.130 0.00 0.00 33.96 3.32
412 2328 5.099042 ACTCAGGTTGTAACAGAAACACT 57.901 39.130 0.00 0.00 0.00 3.55
413 2329 6.229936 ACTCAGGTTGTAACAGAAACACTA 57.770 37.500 0.00 0.00 0.00 2.74
414 2330 6.047231 ACTCAGGTTGTAACAGAAACACTAC 58.953 40.000 0.00 0.00 0.00 2.73
415 2331 5.979993 TCAGGTTGTAACAGAAACACTACA 58.020 37.500 0.00 0.00 0.00 2.74
416 2332 6.046593 TCAGGTTGTAACAGAAACACTACAG 58.953 40.000 0.00 0.00 0.00 2.74
417 2333 5.815740 CAGGTTGTAACAGAAACACTACAGT 59.184 40.000 0.00 0.00 0.00 3.55
418 2334 6.315393 CAGGTTGTAACAGAAACACTACAGTT 59.685 38.462 0.00 0.00 0.00 3.16
419 2335 6.882678 AGGTTGTAACAGAAACACTACAGTTT 59.117 34.615 0.00 0.00 43.90 2.66
429 2345 5.615925 AACACTACAGTTTCCAACTCTCT 57.384 39.130 0.00 0.00 40.46 3.10
464 2381 6.688813 GCGCGATCTCTTTATCATTTCTTTTT 59.311 34.615 12.10 0.00 0.00 1.94
476 2393 4.220602 TCATTTCTTTTTGGGGAAGCTAGC 59.779 41.667 6.62 6.62 0.00 3.42
477 2394 3.525800 TTCTTTTTGGGGAAGCTAGCT 57.474 42.857 12.68 12.68 0.00 3.32
478 2395 4.650972 TTCTTTTTGGGGAAGCTAGCTA 57.349 40.909 19.70 0.00 0.00 3.32
479 2396 3.951663 TCTTTTTGGGGAAGCTAGCTAC 58.048 45.455 19.70 14.09 0.00 3.58
480 2397 3.329520 TCTTTTTGGGGAAGCTAGCTACA 59.670 43.478 19.70 12.11 0.00 2.74
498 2415 4.442733 GCTACAGTAGCGAAGATCACAATC 59.557 45.833 16.89 0.00 42.62 2.67
503 2420 5.457148 CAGTAGCGAAGATCACAATCAGTAC 59.543 44.000 0.00 0.00 34.07 2.73
504 2421 3.439293 AGCGAAGATCACAATCAGTACG 58.561 45.455 0.00 0.00 34.07 3.67
505 2422 3.119459 AGCGAAGATCACAATCAGTACGT 60.119 43.478 0.00 0.00 34.07 3.57
506 2423 4.095932 AGCGAAGATCACAATCAGTACGTA 59.904 41.667 0.00 0.00 34.07 3.57
507 2424 4.204573 GCGAAGATCACAATCAGTACGTAC 59.795 45.833 18.10 18.10 34.07 3.67
508 2425 4.433624 CGAAGATCACAATCAGTACGTACG 59.566 45.833 19.49 15.01 34.07 3.67
509 2426 3.692576 AGATCACAATCAGTACGTACGC 58.307 45.455 19.49 0.00 34.07 4.42
510 2427 2.993449 TCACAATCAGTACGTACGCA 57.007 45.000 19.49 10.74 0.00 5.24
511 2428 3.497297 TCACAATCAGTACGTACGCAT 57.503 42.857 19.49 12.51 0.00 4.73
512 2429 3.840468 TCACAATCAGTACGTACGCATT 58.160 40.909 19.49 17.19 0.00 3.56
535 2452 3.951775 TTTTAGAAATGGTTGCCGCAT 57.048 38.095 0.00 0.00 0.00 4.73
595 2512 0.040067 GCCAATTCGCGGATCCATTC 60.040 55.000 13.41 0.00 0.00 2.67
650 2570 3.193263 CTGTCAAATCAGATGTCCCTCG 58.807 50.000 0.00 0.00 37.61 4.63
694 2615 0.321387 AGGTACAGAGAGACGACGCA 60.321 55.000 0.00 0.00 0.00 5.24
738 2659 2.744202 GTTCATCGCCAGAACAAGACAT 59.256 45.455 8.82 0.00 43.64 3.06
944 2871 0.320421 CCTTCTTCTCGGCCGAAACA 60.320 55.000 30.53 13.35 0.00 2.83
968 2895 0.294014 GTTTAACGTCGAGCGCTAGC 59.706 55.000 11.50 4.06 46.11 3.42
1155 3082 1.063027 CACATGCACATCGATCACCAC 59.937 52.381 0.00 0.00 0.00 4.16
1166 3093 2.368221 TCGATCACCACCATATGCATCA 59.632 45.455 0.19 0.00 0.00 3.07
1167 3094 3.008266 TCGATCACCACCATATGCATCAT 59.992 43.478 0.19 0.00 0.00 2.45
1269 3196 0.033504 GACGTGACAGCAAGGAGGAA 59.966 55.000 0.00 0.00 0.00 3.36
1352 3308 7.418942 GCCAGTGGGGATATATTTGTGATTTTT 60.419 37.037 12.15 0.00 40.01 1.94
1602 3558 2.171209 CTGGTGCGTGGAGATGGTCA 62.171 60.000 0.00 0.00 0.00 4.02
2134 4100 2.396955 CCGGAGCAGTAGACGACGT 61.397 63.158 0.00 0.00 0.00 4.34
2256 4228 2.610859 TGCCTCCCAGGGACCTTC 60.611 66.667 3.01 0.00 35.37 3.46
2276 4248 1.664659 CTGCTCAGCGATTCCAAAGAG 59.335 52.381 0.00 0.00 0.00 2.85
2331 4303 2.429930 CAAAGGGTGCTCGGGACA 59.570 61.111 0.00 0.00 0.00 4.02
2332 4304 1.672356 CAAAGGGTGCTCGGGACAG 60.672 63.158 0.00 0.00 0.00 3.51
2333 4305 3.553095 AAAGGGTGCTCGGGACAGC 62.553 63.158 0.00 0.00 40.13 4.40
2337 4309 4.357947 GTGCTCGGGACAGCGTCA 62.358 66.667 10.14 0.00 42.92 4.35
2338 4310 3.611674 TGCTCGGGACAGCGTCAA 61.612 61.111 10.14 0.00 42.92 3.18
2339 4311 2.811317 GCTCGGGACAGCGTCAAG 60.811 66.667 10.14 6.05 33.68 3.02
2340 4312 2.125912 CTCGGGACAGCGTCAAGG 60.126 66.667 10.14 0.69 33.68 3.61
2341 4313 4.373116 TCGGGACAGCGTCAAGGC 62.373 66.667 10.14 0.00 33.68 4.35
2349 4321 3.272334 GCGTCAAGGCCGCCTATG 61.272 66.667 13.73 13.12 45.20 2.23
2350 4322 2.499205 CGTCAAGGCCGCCTATGA 59.501 61.111 13.73 15.19 31.13 2.15
2351 4323 1.883084 CGTCAAGGCCGCCTATGAC 60.883 63.158 27.72 27.72 37.81 3.06
2352 4324 1.220749 GTCAAGGCCGCCTATGACA 59.779 57.895 30.10 11.59 39.31 3.58
2523 4495 2.766263 ACAAGATGAGATGGAGCCGTAA 59.234 45.455 0.00 0.00 0.00 3.18
2615 4617 8.238631 AGATGTACTACTTCGTTTCTTTCTCTC 58.761 37.037 0.00 0.00 0.00 3.20
2693 4695 3.062763 CGTCTTCATCTGTGAGCAACTT 58.937 45.455 0.00 0.00 35.39 2.66
2798 4813 1.546548 GGAGCAGAAGAAAGGGTGCTT 60.547 52.381 0.00 0.00 46.21 3.91
2815 4830 2.012051 GCTTATCCCTCCAACACACGG 61.012 57.143 0.00 0.00 0.00 4.94
2825 4840 2.097791 TCCAACACACGGCAAACTAAAC 59.902 45.455 0.00 0.00 0.00 2.01
2826 4841 2.159366 CCAACACACGGCAAACTAAACA 60.159 45.455 0.00 0.00 0.00 2.83
2827 4842 3.502920 CAACACACGGCAAACTAAACAA 58.497 40.909 0.00 0.00 0.00 2.83
2828 4843 3.851976 ACACACGGCAAACTAAACAAA 57.148 38.095 0.00 0.00 0.00 2.83
2829 4844 3.503891 ACACACGGCAAACTAAACAAAC 58.496 40.909 0.00 0.00 0.00 2.93
2830 4845 3.057456 ACACACGGCAAACTAAACAAACA 60.057 39.130 0.00 0.00 0.00 2.83
2831 4846 4.109050 CACACGGCAAACTAAACAAACAT 58.891 39.130 0.00 0.00 0.00 2.71
2832 4847 5.163642 ACACACGGCAAACTAAACAAACATA 60.164 36.000 0.00 0.00 0.00 2.29
2833 4848 5.744345 CACACGGCAAACTAAACAAACATAA 59.256 36.000 0.00 0.00 0.00 1.90
2834 4849 6.253727 CACACGGCAAACTAAACAAACATAAA 59.746 34.615 0.00 0.00 0.00 1.40
2835 4850 6.474102 ACACGGCAAACTAAACAAACATAAAG 59.526 34.615 0.00 0.00 0.00 1.85
2836 4851 6.693545 CACGGCAAACTAAACAAACATAAAGA 59.306 34.615 0.00 0.00 0.00 2.52
2837 4852 6.915843 ACGGCAAACTAAACAAACATAAAGAG 59.084 34.615 0.00 0.00 0.00 2.85
2838 4853 7.136119 CGGCAAACTAAACAAACATAAAGAGA 58.864 34.615 0.00 0.00 0.00 3.10
2839 4854 7.646130 CGGCAAACTAAACAAACATAAAGAGAA 59.354 33.333 0.00 0.00 0.00 2.87
2840 4855 8.968242 GGCAAACTAAACAAACATAAAGAGAAG 58.032 33.333 0.00 0.00 0.00 2.85
2841 4856 8.968242 GCAAACTAAACAAACATAAAGAGAAGG 58.032 33.333 0.00 0.00 0.00 3.46
2844 4859 8.622948 ACTAAACAAACATAAAGAGAAGGAGG 57.377 34.615 0.00 0.00 0.00 4.30
2845 4860 5.966742 AACAAACATAAAGAGAAGGAGGC 57.033 39.130 0.00 0.00 0.00 4.70
2846 4861 4.985538 ACAAACATAAAGAGAAGGAGGCA 58.014 39.130 0.00 0.00 0.00 4.75
2847 4862 4.762251 ACAAACATAAAGAGAAGGAGGCAC 59.238 41.667 0.00 0.00 0.00 5.01
2848 4863 3.636153 ACATAAAGAGAAGGAGGCACC 57.364 47.619 0.00 0.00 39.35 5.01
2849 4864 2.239907 ACATAAAGAGAAGGAGGCACCC 59.760 50.000 0.00 0.00 40.05 4.61
2850 4865 1.286248 TAAAGAGAAGGAGGCACCCC 58.714 55.000 0.00 0.00 40.05 4.95
2851 4866 0.772124 AAAGAGAAGGAGGCACCCCA 60.772 55.000 0.00 0.00 40.05 4.96
2852 4867 1.492993 AAGAGAAGGAGGCACCCCAC 61.493 60.000 0.00 0.00 40.05 4.61
2853 4868 1.920835 GAGAAGGAGGCACCCCACT 60.921 63.158 0.00 0.00 40.05 4.00
2854 4869 0.617820 GAGAAGGAGGCACCCCACTA 60.618 60.000 0.00 0.00 40.05 2.74
2855 4870 0.178873 AGAAGGAGGCACCCCACTAA 60.179 55.000 0.00 0.00 40.05 2.24
2856 4871 0.253327 GAAGGAGGCACCCCACTAAG 59.747 60.000 0.00 0.00 40.05 2.18
2857 4872 0.475828 AAGGAGGCACCCCACTAAGT 60.476 55.000 0.00 0.00 40.05 2.24
2858 4873 1.201429 AGGAGGCACCCCACTAAGTG 61.201 60.000 0.00 0.00 40.05 3.16
2859 4874 1.489560 GGAGGCACCCCACTAAGTGT 61.490 60.000 0.00 0.00 36.35 3.55
2860 4875 0.321653 GAGGCACCCCACTAAGTGTG 60.322 60.000 0.00 0.00 45.80 3.82
2869 4884 2.930826 CACTAAGTGTGGGTTGGAGT 57.069 50.000 0.00 0.00 42.68 3.85
2871 4886 3.926616 CACTAAGTGTGGGTTGGAGTAG 58.073 50.000 0.00 0.00 42.68 2.57
2872 4887 3.576982 CACTAAGTGTGGGTTGGAGTAGA 59.423 47.826 0.00 0.00 42.68 2.59
2873 4888 4.039973 CACTAAGTGTGGGTTGGAGTAGAA 59.960 45.833 0.00 0.00 42.68 2.10
2874 4889 3.771577 AAGTGTGGGTTGGAGTAGAAG 57.228 47.619 0.00 0.00 0.00 2.85
2875 4890 2.972348 AGTGTGGGTTGGAGTAGAAGA 58.028 47.619 0.00 0.00 0.00 2.87
2876 4891 3.314693 AGTGTGGGTTGGAGTAGAAGAA 58.685 45.455 0.00 0.00 0.00 2.52
2877 4892 3.714798 AGTGTGGGTTGGAGTAGAAGAAA 59.285 43.478 0.00 0.00 0.00 2.52
2878 4893 4.065789 GTGTGGGTTGGAGTAGAAGAAAG 58.934 47.826 0.00 0.00 0.00 2.62
2879 4894 3.072476 TGTGGGTTGGAGTAGAAGAAAGG 59.928 47.826 0.00 0.00 0.00 3.11
2880 4895 2.642807 TGGGTTGGAGTAGAAGAAAGGG 59.357 50.000 0.00 0.00 0.00 3.95
2881 4896 2.643304 GGGTTGGAGTAGAAGAAAGGGT 59.357 50.000 0.00 0.00 0.00 4.34
2882 4897 3.559384 GGGTTGGAGTAGAAGAAAGGGTG 60.559 52.174 0.00 0.00 0.00 4.61
2883 4898 3.075148 GTTGGAGTAGAAGAAAGGGTGC 58.925 50.000 0.00 0.00 0.00 5.01
2884 4899 2.621070 TGGAGTAGAAGAAAGGGTGCT 58.379 47.619 0.00 0.00 0.00 4.40
2885 4900 2.979678 TGGAGTAGAAGAAAGGGTGCTT 59.020 45.455 0.00 0.00 0.00 3.91
2886 4901 4.164981 TGGAGTAGAAGAAAGGGTGCTTA 58.835 43.478 0.00 0.00 0.00 3.09
2887 4902 4.783227 TGGAGTAGAAGAAAGGGTGCTTAT 59.217 41.667 0.00 0.00 0.00 1.73
2888 4903 5.104900 TGGAGTAGAAGAAAGGGTGCTTATC 60.105 44.000 0.00 0.00 0.00 1.75
2889 4904 5.360649 AGTAGAAGAAAGGGTGCTTATCC 57.639 43.478 0.00 0.00 0.00 2.59
2890 4905 3.653835 AGAAGAAAGGGTGCTTATCCC 57.346 47.619 0.00 0.00 44.90 3.85
2896 4911 3.496675 GGGTGCTTATCCCTCCAAC 57.503 57.895 0.00 0.00 41.58 3.77
2897 4912 0.623723 GGGTGCTTATCCCTCCAACA 59.376 55.000 0.00 0.00 41.58 3.33
2898 4913 1.682087 GGGTGCTTATCCCTCCAACAC 60.682 57.143 0.00 0.00 41.58 3.32
2899 4914 1.004277 GGTGCTTATCCCTCCAACACA 59.996 52.381 0.00 0.00 0.00 3.72
2900 4915 2.357154 GGTGCTTATCCCTCCAACACAT 60.357 50.000 0.00 0.00 0.00 3.21
2901 4916 2.684881 GTGCTTATCCCTCCAACACATG 59.315 50.000 0.00 0.00 0.00 3.21
2940 4955 2.092968 AGCCCAATCTCATAGAACGCAA 60.093 45.455 0.00 0.00 0.00 4.85
2955 4970 1.202245 ACGCAAAGCACAAAATGTCGT 60.202 42.857 0.00 0.00 0.00 4.34
2991 5006 1.557651 GATACTCCGAAAGCACGACC 58.442 55.000 0.00 0.00 35.09 4.79
2999 5014 2.043411 CGAAAGCACGACCAAAACATG 58.957 47.619 0.00 0.00 35.09 3.21
3015 5030 3.686227 ACATGGGGCCAAATTAGATCA 57.314 42.857 4.39 0.00 0.00 2.92
3029 5052 2.080286 AGATCAACGTCAAGGAACGG 57.920 50.000 0.00 0.00 46.72 4.44
3031 5054 0.034896 ATCAACGTCAAGGAACGGCT 59.965 50.000 0.00 0.00 46.72 5.52
3078 5121 2.427506 GAGAAACCGAGCAATGAAGGT 58.572 47.619 0.00 0.00 38.88 3.50
3080 5123 2.151202 GAAACCGAGCAATGAAGGTGA 58.849 47.619 0.00 0.00 37.03 4.02
3087 5130 1.514678 GCAATGAAGGTGACGCCACA 61.515 55.000 7.99 7.56 44.93 4.17
3113 5182 0.179004 AACCCGAGTGGATTGCACAA 60.179 50.000 11.08 0.00 37.49 3.33
3147 5218 1.933115 AAATCACCAATGCCGACCGC 61.933 55.000 0.00 0.00 38.31 5.68
3226 5297 1.078143 AGTCAAAGCCGGCAGATCC 60.078 57.895 31.54 13.37 0.00 3.36
3236 5307 2.388347 GGCAGATCCGAGTCAAAGC 58.612 57.895 0.00 0.00 0.00 3.51
3237 5308 1.092345 GGCAGATCCGAGTCAAAGCC 61.092 60.000 0.00 0.00 0.00 4.35
3238 5309 1.424493 GCAGATCCGAGTCAAAGCCG 61.424 60.000 0.00 0.00 0.00 5.52
3239 5310 0.807667 CAGATCCGAGTCAAAGCCGG 60.808 60.000 0.00 0.00 44.22 6.13
3240 5311 2.125106 ATCCGAGTCAAAGCCGGC 60.125 61.111 21.89 21.89 42.70 6.13
3241 5312 2.852495 GATCCGAGTCAAAGCCGGCA 62.852 60.000 31.54 4.11 42.70 5.69
3242 5313 2.463589 ATCCGAGTCAAAGCCGGCAA 62.464 55.000 31.54 8.11 42.70 4.52
3243 5314 2.258013 CCGAGTCAAAGCCGGCAAA 61.258 57.895 31.54 7.69 36.62 3.68
3244 5315 1.586154 CCGAGTCAAAGCCGGCAAAT 61.586 55.000 31.54 11.91 36.62 2.32
3245 5316 0.179189 CGAGTCAAAGCCGGCAAATC 60.179 55.000 31.54 17.66 0.00 2.17
3255 5326 1.227556 CGGCAAATCTCGGGTAGGG 60.228 63.158 0.00 0.00 0.00 3.53
3276 5347 1.070289 GGTCCCGGGCTAATAGTCTTG 59.930 57.143 18.49 0.00 0.00 3.02
3288 5359 7.012421 GGGCTAATAGTCTTGAAACAATGGTAG 59.988 40.741 0.00 0.00 0.00 3.18
3292 5363 7.759489 ATAGTCTTGAAACAATGGTAGCAAA 57.241 32.000 0.00 0.00 0.00 3.68
3317 5393 7.184862 AGGATTCAATTGTATCCAAGGAGTTT 58.815 34.615 33.11 15.88 42.38 2.66
3318 5394 7.675619 AGGATTCAATTGTATCCAAGGAGTTTT 59.324 33.333 33.11 15.32 42.38 2.43
3320 5396 9.358872 GATTCAATTGTATCCAAGGAGTTTTTC 57.641 33.333 12.68 0.00 33.17 2.29
3338 5414 3.649277 CTACGCTTGCCTCGCCACT 62.649 63.158 0.00 0.00 0.00 4.00
3361 5437 8.058328 CACTATAAGTACATCGTCATTTTGCTG 58.942 37.037 0.00 0.00 0.00 4.41
3425 5504 9.528018 CAAAGTGGTTATCAAACACAAAGTATT 57.472 29.630 9.56 0.00 37.34 1.89
3430 5509 8.908903 TGGTTATCAAACACAAAGTATTTCTGT 58.091 29.630 0.00 0.00 38.89 3.41
3441 5520 5.339008 AAGTATTTCTGTGCTCGGTATGA 57.661 39.130 0.00 0.00 0.00 2.15
3459 5538 5.186797 GGTATGAGATAGCATGACCTAGCTT 59.813 44.000 0.00 0.00 42.05 3.74
3483 5562 8.768957 TTTGACAACACATCAATTCTCAAAAA 57.231 26.923 0.00 0.00 36.02 1.94
3484 5563 8.945481 TTGACAACACATCAATTCTCAAAAAT 57.055 26.923 0.00 0.00 31.11 1.82
3485 5564 8.355272 TGACAACACATCAATTCTCAAAAATG 57.645 30.769 0.00 0.00 0.00 2.32
3486 5565 7.980662 TGACAACACATCAATTCTCAAAAATGT 59.019 29.630 0.00 0.00 0.00 2.71
3487 5566 8.356533 ACAACACATCAATTCTCAAAAATGTC 57.643 30.769 0.00 0.00 0.00 3.06
3488 5567 8.199449 ACAACACATCAATTCTCAAAAATGTCT 58.801 29.630 0.00 0.00 0.00 3.41
3489 5568 9.681692 CAACACATCAATTCTCAAAAATGTCTA 57.318 29.630 0.00 0.00 0.00 2.59
3490 5569 9.903682 AACACATCAATTCTCAAAAATGTCTAG 57.096 29.630 0.00 0.00 0.00 2.43
3491 5570 9.288576 ACACATCAATTCTCAAAAATGTCTAGA 57.711 29.630 0.00 0.00 0.00 2.43
3494 5573 9.286946 CATCAATTCTCAAAAATGTCTAGAAGC 57.713 33.333 0.00 0.00 30.30 3.86
3495 5574 8.394971 TCAATTCTCAAAAATGTCTAGAAGCA 57.605 30.769 0.00 0.00 30.30 3.91
3496 5575 9.017509 TCAATTCTCAAAAATGTCTAGAAGCAT 57.982 29.630 0.00 0.00 30.30 3.79
3499 5578 7.525688 TCTCAAAAATGTCTAGAAGCATACG 57.474 36.000 0.00 0.00 0.00 3.06
3500 5579 6.036083 TCTCAAAAATGTCTAGAAGCATACGC 59.964 38.462 0.00 0.00 38.99 4.42
3501 5580 4.778842 AAAATGTCTAGAAGCATACGCG 57.221 40.909 3.53 3.53 45.49 6.01
3502 5581 1.772182 ATGTCTAGAAGCATACGCGC 58.228 50.000 5.73 0.00 45.49 6.86
3503 5582 0.591488 TGTCTAGAAGCATACGCGCG 60.591 55.000 30.96 30.96 45.49 6.86
3504 5583 1.657487 TCTAGAAGCATACGCGCGC 60.657 57.895 32.58 23.91 45.49 6.86
3505 5584 2.649257 CTAGAAGCATACGCGCGCC 61.649 63.158 32.58 15.94 45.49 6.53
3506 5585 3.133767 TAGAAGCATACGCGCGCCT 62.134 57.895 32.58 17.53 45.49 5.52
3507 5586 2.622903 TAGAAGCATACGCGCGCCTT 62.623 55.000 32.58 25.15 45.49 4.35
3508 5587 3.773649 GAAGCATACGCGCGCCTTG 62.774 63.158 32.58 24.59 45.49 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.165079 GTTGTCGCAATACACCACGG 59.835 55.000 0.00 0.00 0.00 4.94
1 2 0.862490 TGTTGTCGCAATACACCACG 59.138 50.000 0.00 0.00 0.00 4.94
4 5 2.742053 ACTGATGTTGTCGCAATACACC 59.258 45.455 0.00 0.00 0.00 4.16
22 1938 0.036732 TTGCAAGGTAGGAGGCACTG 59.963 55.000 0.00 0.00 41.55 3.66
40 1956 0.749454 GATGCTGGACCGGATTGCTT 60.749 55.000 9.46 5.01 0.00 3.91
112 2028 0.674534 AGACTCGAACTTCGCCAAGT 59.325 50.000 6.29 5.13 45.43 3.16
142 2058 0.530650 CGGCATACTGCGAACTGGAT 60.531 55.000 0.00 0.00 46.21 3.41
143 2059 1.153647 CGGCATACTGCGAACTGGA 60.154 57.895 0.00 0.00 46.21 3.86
144 2060 1.153647 TCGGCATACTGCGAACTGG 60.154 57.895 0.00 0.00 46.21 4.00
145 2061 0.735978 TGTCGGCATACTGCGAACTG 60.736 55.000 0.00 0.00 46.21 3.16
146 2062 0.175760 ATGTCGGCATACTGCGAACT 59.824 50.000 0.00 0.00 46.21 3.01
147 2063 0.577269 GATGTCGGCATACTGCGAAC 59.423 55.000 0.51 0.00 46.21 3.95
148 2064 0.459899 AGATGTCGGCATACTGCGAA 59.540 50.000 0.51 0.00 46.21 4.70
149 2065 0.459899 AAGATGTCGGCATACTGCGA 59.540 50.000 0.51 0.00 46.21 5.10
150 2066 0.855349 GAAGATGTCGGCATACTGCG 59.145 55.000 0.51 0.00 46.21 5.18
151 2067 1.594862 GTGAAGATGTCGGCATACTGC 59.405 52.381 0.51 1.29 44.08 4.40
152 2068 2.205074 GGTGAAGATGTCGGCATACTG 58.795 52.381 0.51 0.00 35.07 2.74
153 2069 1.831106 TGGTGAAGATGTCGGCATACT 59.169 47.619 0.51 0.00 35.07 2.12
154 2070 2.309528 TGGTGAAGATGTCGGCATAC 57.690 50.000 0.51 0.00 35.07 2.39
155 2071 2.419990 CCTTGGTGAAGATGTCGGCATA 60.420 50.000 0.51 0.00 35.07 3.14
156 2072 1.679944 CCTTGGTGAAGATGTCGGCAT 60.680 52.381 0.00 0.00 38.18 4.40
157 2073 0.321564 CCTTGGTGAAGATGTCGGCA 60.322 55.000 0.00 0.00 0.00 5.69
158 2074 1.026718 CCCTTGGTGAAGATGTCGGC 61.027 60.000 0.00 0.00 0.00 5.54
159 2075 0.613260 TCCCTTGGTGAAGATGTCGG 59.387 55.000 0.00 0.00 0.00 4.79
160 2076 1.276421 AGTCCCTTGGTGAAGATGTCG 59.724 52.381 0.00 0.00 0.00 4.35
161 2077 2.704572 CAGTCCCTTGGTGAAGATGTC 58.295 52.381 0.00 0.00 0.00 3.06
162 2078 1.271597 GCAGTCCCTTGGTGAAGATGT 60.272 52.381 0.00 0.00 0.00 3.06
163 2079 1.457346 GCAGTCCCTTGGTGAAGATG 58.543 55.000 0.00 0.00 0.00 2.90
164 2080 0.329596 GGCAGTCCCTTGGTGAAGAT 59.670 55.000 0.00 0.00 0.00 2.40
165 2081 1.761174 GGCAGTCCCTTGGTGAAGA 59.239 57.895 0.00 0.00 0.00 2.87
166 2082 4.404691 GGCAGTCCCTTGGTGAAG 57.595 61.111 0.00 0.00 0.00 3.02
180 2096 2.922503 TGAAGACTGGCGAGGGCA 60.923 61.111 0.00 0.00 42.47 5.36
181 2097 2.435059 GTGAAGACTGGCGAGGGC 60.435 66.667 0.00 0.00 38.90 5.19
182 2098 1.079543 CAGTGAAGACTGGCGAGGG 60.080 63.158 0.00 0.00 45.26 4.30
183 2099 4.586618 CAGTGAAGACTGGCGAGG 57.413 61.111 0.00 0.00 45.26 4.63
190 2106 3.574396 TGGATCGAAACTCAGTGAAGACT 59.426 43.478 0.00 0.00 0.00 3.24
191 2107 3.914312 TGGATCGAAACTCAGTGAAGAC 58.086 45.455 0.00 0.00 0.00 3.01
192 2108 3.615110 GCTGGATCGAAACTCAGTGAAGA 60.615 47.826 0.00 0.00 0.00 2.87
193 2109 2.670414 GCTGGATCGAAACTCAGTGAAG 59.330 50.000 0.00 0.00 0.00 3.02
194 2110 2.612972 GGCTGGATCGAAACTCAGTGAA 60.613 50.000 0.00 0.00 0.00 3.18
195 2111 1.066858 GGCTGGATCGAAACTCAGTGA 60.067 52.381 0.00 0.00 0.00 3.41
196 2112 1.066573 AGGCTGGATCGAAACTCAGTG 60.067 52.381 0.00 0.00 0.00 3.66
197 2113 1.066573 CAGGCTGGATCGAAACTCAGT 60.067 52.381 6.61 0.00 0.00 3.41
198 2114 1.205655 TCAGGCTGGATCGAAACTCAG 59.794 52.381 15.73 0.00 0.00 3.35
199 2115 1.266178 TCAGGCTGGATCGAAACTCA 58.734 50.000 15.73 0.00 0.00 3.41
200 2116 2.003301 GTTCAGGCTGGATCGAAACTC 58.997 52.381 15.73 0.00 0.00 3.01
201 2117 1.347707 TGTTCAGGCTGGATCGAAACT 59.652 47.619 15.73 0.00 0.00 2.66
202 2118 1.808411 TGTTCAGGCTGGATCGAAAC 58.192 50.000 15.73 10.84 0.00 2.78
203 2119 2.632377 GATGTTCAGGCTGGATCGAAA 58.368 47.619 15.73 0.00 0.00 3.46
204 2120 1.134401 GGATGTTCAGGCTGGATCGAA 60.134 52.381 15.73 0.00 0.00 3.71
205 2121 0.465705 GGATGTTCAGGCTGGATCGA 59.534 55.000 15.73 0.00 0.00 3.59
206 2122 0.467384 AGGATGTTCAGGCTGGATCG 59.533 55.000 15.73 0.00 0.00 3.69
207 2123 2.570135 GAAGGATGTTCAGGCTGGATC 58.430 52.381 15.73 13.06 0.00 3.36
208 2124 1.213926 GGAAGGATGTTCAGGCTGGAT 59.786 52.381 15.73 4.47 0.00 3.41
209 2125 0.620556 GGAAGGATGTTCAGGCTGGA 59.379 55.000 15.73 1.78 0.00 3.86
210 2126 0.394899 GGGAAGGATGTTCAGGCTGG 60.395 60.000 15.73 0.00 0.00 4.85
211 2127 0.329261 TGGGAAGGATGTTCAGGCTG 59.671 55.000 8.58 8.58 0.00 4.85
212 2128 1.075601 TTGGGAAGGATGTTCAGGCT 58.924 50.000 0.00 0.00 0.00 4.58
213 2129 1.753073 CATTGGGAAGGATGTTCAGGC 59.247 52.381 0.00 0.00 0.00 4.85
214 2130 2.025037 TCCATTGGGAAGGATGTTCAGG 60.025 50.000 2.09 0.00 41.32 3.86
215 2131 3.285484 CTCCATTGGGAAGGATGTTCAG 58.715 50.000 2.09 0.00 44.38 3.02
216 2132 2.649312 ACTCCATTGGGAAGGATGTTCA 59.351 45.455 2.09 0.00 44.38 3.18
217 2133 3.372440 ACTCCATTGGGAAGGATGTTC 57.628 47.619 2.09 0.00 44.38 3.18
218 2134 3.564352 GGAACTCCATTGGGAAGGATGTT 60.564 47.826 2.09 0.00 44.38 2.71
219 2135 2.024941 GGAACTCCATTGGGAAGGATGT 60.025 50.000 2.09 0.00 44.38 3.06
220 2136 2.659428 GGAACTCCATTGGGAAGGATG 58.341 52.381 2.09 0.00 44.38 3.51
221 2137 1.212935 CGGAACTCCATTGGGAAGGAT 59.787 52.381 2.09 0.00 44.38 3.24
222 2138 0.618458 CGGAACTCCATTGGGAAGGA 59.382 55.000 2.09 0.00 44.38 3.36
223 2139 0.394352 CCGGAACTCCATTGGGAAGG 60.394 60.000 0.00 0.00 44.38 3.46
224 2140 1.032114 GCCGGAACTCCATTGGGAAG 61.032 60.000 5.05 0.00 44.38 3.46
225 2141 1.001393 GCCGGAACTCCATTGGGAA 60.001 57.895 5.05 0.00 44.38 3.97
226 2142 2.674754 GCCGGAACTCCATTGGGA 59.325 61.111 5.05 0.00 42.29 4.37
227 2143 2.824041 CGCCGGAACTCCATTGGG 60.824 66.667 5.05 0.00 35.14 4.12
228 2144 2.824041 CCGCCGGAACTCCATTGG 60.824 66.667 5.05 0.00 35.14 3.16
229 2145 1.815421 CTCCGCCGGAACTCCATTG 60.815 63.158 7.50 0.00 35.14 2.82
230 2146 2.584608 CTCCGCCGGAACTCCATT 59.415 61.111 7.50 0.00 35.14 3.16
231 2147 3.470888 CCTCCGCCGGAACTCCAT 61.471 66.667 7.50 0.00 35.14 3.41
250 2166 4.881850 CAGAATATACAACTCAACACCCCC 59.118 45.833 0.00 0.00 0.00 5.40
251 2167 5.497474 ACAGAATATACAACTCAACACCCC 58.503 41.667 0.00 0.00 0.00 4.95
252 2168 7.101054 TGTACAGAATATACAACTCAACACCC 58.899 38.462 0.00 0.00 29.59 4.61
253 2169 8.718102 ATGTACAGAATATACAACTCAACACC 57.282 34.615 0.33 0.00 36.19 4.16
276 2192 6.634035 CCGAGACAATGCAACATTACATAATG 59.366 38.462 9.59 9.59 46.41 1.90
277 2193 6.318648 ACCGAGACAATGCAACATTACATAAT 59.681 34.615 0.00 0.00 0.00 1.28
278 2194 5.645929 ACCGAGACAATGCAACATTACATAA 59.354 36.000 0.00 0.00 0.00 1.90
279 2195 5.064579 CACCGAGACAATGCAACATTACATA 59.935 40.000 0.00 0.00 0.00 2.29
280 2196 4.009675 ACCGAGACAATGCAACATTACAT 58.990 39.130 0.00 0.00 0.00 2.29
281 2197 3.188254 CACCGAGACAATGCAACATTACA 59.812 43.478 0.00 0.00 0.00 2.41
282 2198 3.188460 ACACCGAGACAATGCAACATTAC 59.812 43.478 0.00 0.00 0.00 1.89
283 2199 3.407698 ACACCGAGACAATGCAACATTA 58.592 40.909 0.00 0.00 0.00 1.90
284 2200 2.229792 ACACCGAGACAATGCAACATT 58.770 42.857 0.00 0.00 0.00 2.71
285 2201 1.896220 ACACCGAGACAATGCAACAT 58.104 45.000 0.00 0.00 0.00 2.71
286 2202 2.139917 GTACACCGAGACAATGCAACA 58.860 47.619 0.00 0.00 0.00 3.33
287 2203 1.463444 GGTACACCGAGACAATGCAAC 59.537 52.381 0.00 0.00 0.00 4.17
288 2204 1.803334 GGTACACCGAGACAATGCAA 58.197 50.000 0.00 0.00 0.00 4.08
289 2205 3.525619 GGTACACCGAGACAATGCA 57.474 52.632 0.00 0.00 0.00 3.96
300 2216 4.217983 CCTACAATCTAGGATCGGTACACC 59.782 50.000 0.00 0.00 36.85 4.16
301 2217 5.068636 TCCTACAATCTAGGATCGGTACAC 58.931 45.833 0.00 0.00 38.71 2.90
302 2218 5.314718 TCCTACAATCTAGGATCGGTACA 57.685 43.478 0.00 0.00 38.71 2.90
310 2226 5.332106 AGCTCAGATCCTACAATCTAGGA 57.668 43.478 0.00 0.00 46.65 2.94
311 2227 6.719370 AGTAAGCTCAGATCCTACAATCTAGG 59.281 42.308 0.00 0.00 34.21 3.02
312 2228 7.094377 GGAGTAAGCTCAGATCCTACAATCTAG 60.094 44.444 0.00 0.00 43.37 2.43
313 2229 6.717540 GGAGTAAGCTCAGATCCTACAATCTA 59.282 42.308 0.00 0.00 43.37 1.98
314 2230 5.538433 GGAGTAAGCTCAGATCCTACAATCT 59.462 44.000 0.00 0.00 43.37 2.40
315 2231 5.563867 CGGAGTAAGCTCAGATCCTACAATC 60.564 48.000 0.00 0.00 43.37 2.67
316 2232 4.279671 CGGAGTAAGCTCAGATCCTACAAT 59.720 45.833 0.00 0.00 43.37 2.71
317 2233 3.632604 CGGAGTAAGCTCAGATCCTACAA 59.367 47.826 0.00 0.00 43.37 2.41
318 2234 3.215151 CGGAGTAAGCTCAGATCCTACA 58.785 50.000 0.00 0.00 43.37 2.74
319 2235 2.554893 CCGGAGTAAGCTCAGATCCTAC 59.445 54.545 0.00 0.00 43.37 3.18
320 2236 2.865079 CCGGAGTAAGCTCAGATCCTA 58.135 52.381 0.00 0.00 43.37 2.94
321 2237 1.698506 CCGGAGTAAGCTCAGATCCT 58.301 55.000 0.00 0.00 43.37 3.24
322 2238 0.032815 GCCGGAGTAAGCTCAGATCC 59.967 60.000 5.05 0.00 43.37 3.36
323 2239 0.747255 TGCCGGAGTAAGCTCAGATC 59.253 55.000 5.05 0.00 43.37 2.75
324 2240 1.069823 CATGCCGGAGTAAGCTCAGAT 59.930 52.381 5.05 0.00 43.37 2.90
325 2241 0.461548 CATGCCGGAGTAAGCTCAGA 59.538 55.000 5.05 0.00 43.37 3.27
326 2242 0.531532 CCATGCCGGAGTAAGCTCAG 60.532 60.000 5.05 0.00 43.37 3.35
327 2243 1.522092 CCATGCCGGAGTAAGCTCA 59.478 57.895 5.05 0.00 43.37 4.26
328 2244 1.889573 GCCATGCCGGAGTAAGCTC 60.890 63.158 5.05 0.00 40.93 4.09
329 2245 2.190578 GCCATGCCGGAGTAAGCT 59.809 61.111 5.05 0.00 36.56 3.74
330 2246 2.902343 GGCCATGCCGGAGTAAGC 60.902 66.667 5.05 0.00 39.62 3.09
345 2261 1.811679 GAGAGTTAGGCACGCAGGC 60.812 63.158 0.00 0.00 44.61 4.85
346 2262 1.517257 CGAGAGTTAGGCACGCAGG 60.517 63.158 0.00 0.00 0.00 4.85
347 2263 1.517257 CCGAGAGTTAGGCACGCAG 60.517 63.158 0.00 0.00 0.00 5.18
348 2264 2.571757 CCGAGAGTTAGGCACGCA 59.428 61.111 0.00 0.00 0.00 5.24
349 2265 2.202756 CCCGAGAGTTAGGCACGC 60.203 66.667 0.00 0.00 0.00 5.34
350 2266 1.433879 CTCCCGAGAGTTAGGCACG 59.566 63.158 0.00 0.00 35.21 5.34
366 2282 4.164843 ACATAGAGTGGGAGAGAGACTC 57.835 50.000 0.00 0.00 44.24 3.36
367 2283 5.718801 TTACATAGAGTGGGAGAGAGACT 57.281 43.478 0.00 0.00 0.00 3.24
368 2284 5.889289 AGTTTACATAGAGTGGGAGAGAGAC 59.111 44.000 0.00 0.00 0.00 3.36
369 2285 6.080969 AGTTTACATAGAGTGGGAGAGAGA 57.919 41.667 0.00 0.00 0.00 3.10
370 2286 5.888724 TGAGTTTACATAGAGTGGGAGAGAG 59.111 44.000 0.00 0.00 0.00 3.20
371 2287 5.827756 TGAGTTTACATAGAGTGGGAGAGA 58.172 41.667 0.00 0.00 0.00 3.10
372 2288 5.068460 CCTGAGTTTACATAGAGTGGGAGAG 59.932 48.000 0.00 0.00 0.00 3.20
373 2289 4.956700 CCTGAGTTTACATAGAGTGGGAGA 59.043 45.833 0.00 0.00 0.00 3.71
374 2290 4.712337 ACCTGAGTTTACATAGAGTGGGAG 59.288 45.833 0.00 0.00 0.00 4.30
375 2291 4.684724 ACCTGAGTTTACATAGAGTGGGA 58.315 43.478 0.00 0.00 0.00 4.37
376 2292 5.178797 CAACCTGAGTTTACATAGAGTGGG 58.821 45.833 0.00 0.00 32.45 4.61
377 2293 5.794894 ACAACCTGAGTTTACATAGAGTGG 58.205 41.667 0.00 0.00 32.45 4.00
378 2294 7.870954 TGTTACAACCTGAGTTTACATAGAGTG 59.129 37.037 0.00 0.00 32.45 3.51
379 2295 7.959175 TGTTACAACCTGAGTTTACATAGAGT 58.041 34.615 0.00 0.00 32.45 3.24
380 2296 8.304596 TCTGTTACAACCTGAGTTTACATAGAG 58.695 37.037 0.00 0.00 32.45 2.43
381 2297 8.185506 TCTGTTACAACCTGAGTTTACATAGA 57.814 34.615 0.00 0.00 32.45 1.98
382 2298 8.827177 TTCTGTTACAACCTGAGTTTACATAG 57.173 34.615 0.00 0.00 32.45 2.23
383 2299 9.048446 GTTTCTGTTACAACCTGAGTTTACATA 57.952 33.333 0.00 0.00 32.45 2.29
384 2300 7.554835 TGTTTCTGTTACAACCTGAGTTTACAT 59.445 33.333 0.00 0.00 32.45 2.29
385 2301 6.879993 TGTTTCTGTTACAACCTGAGTTTACA 59.120 34.615 0.00 0.00 32.45 2.41
386 2302 7.065443 AGTGTTTCTGTTACAACCTGAGTTTAC 59.935 37.037 0.00 0.00 32.45 2.01
387 2303 7.107542 AGTGTTTCTGTTACAACCTGAGTTTA 58.892 34.615 0.00 0.00 32.45 2.01
388 2304 5.944007 AGTGTTTCTGTTACAACCTGAGTTT 59.056 36.000 0.00 0.00 32.45 2.66
389 2305 5.497474 AGTGTTTCTGTTACAACCTGAGTT 58.503 37.500 0.00 0.00 36.33 3.01
390 2306 5.099042 AGTGTTTCTGTTACAACCTGAGT 57.901 39.130 0.00 0.00 0.00 3.41
391 2307 6.046593 TGTAGTGTTTCTGTTACAACCTGAG 58.953 40.000 0.00 0.00 0.00 3.35
392 2308 5.979993 TGTAGTGTTTCTGTTACAACCTGA 58.020 37.500 0.00 0.00 0.00 3.86
393 2309 5.815740 ACTGTAGTGTTTCTGTTACAACCTG 59.184 40.000 0.00 0.00 0.00 4.00
394 2310 5.985911 ACTGTAGTGTTTCTGTTACAACCT 58.014 37.500 0.00 0.00 0.00 3.50
395 2311 6.673154 AACTGTAGTGTTTCTGTTACAACC 57.327 37.500 0.00 0.00 0.00 3.77
417 2333 3.679389 GCAATCTCCAGAGAGTTGGAAA 58.321 45.455 15.41 0.00 46.20 3.13
418 2334 2.354103 CGCAATCTCCAGAGAGTTGGAA 60.354 50.000 15.41 0.00 46.20 3.53
419 2335 1.205655 CGCAATCTCCAGAGAGTTGGA 59.794 52.381 15.41 2.47 44.84 3.53
420 2336 1.649664 CGCAATCTCCAGAGAGTTGG 58.350 55.000 15.41 0.00 41.33 3.77
421 2337 1.005340 GCGCAATCTCCAGAGAGTTG 58.995 55.000 0.30 8.81 41.33 3.16
422 2338 0.459237 CGCGCAATCTCCAGAGAGTT 60.459 55.000 8.75 0.00 41.33 3.01
423 2339 1.140589 CGCGCAATCTCCAGAGAGT 59.859 57.895 8.75 0.00 41.33 3.24
424 2340 2.236382 GCGCGCAATCTCCAGAGAG 61.236 63.158 29.10 0.00 41.33 3.20
425 2341 2.202797 GCGCGCAATCTCCAGAGA 60.203 61.111 29.10 0.00 42.37 3.10
429 2345 2.961721 GATCGCGCGCAATCTCCA 60.962 61.111 32.61 5.24 0.00 3.86
464 2381 2.667470 CTACTGTAGCTAGCTTCCCCA 58.333 52.381 24.88 13.38 0.00 4.96
476 2393 5.582550 TGATTGTGATCTTCGCTACTGTAG 58.417 41.667 10.48 10.48 33.28 2.74
477 2394 5.125578 ACTGATTGTGATCTTCGCTACTGTA 59.874 40.000 0.00 0.00 33.28 2.74
478 2395 4.081972 ACTGATTGTGATCTTCGCTACTGT 60.082 41.667 0.00 0.00 33.28 3.55
479 2396 4.428209 ACTGATTGTGATCTTCGCTACTG 58.572 43.478 0.00 0.00 33.28 2.74
480 2397 4.727507 ACTGATTGTGATCTTCGCTACT 57.272 40.909 0.00 0.00 33.28 2.57
498 2415 9.910511 ATTTCTAAAATTAATGCGTACGTACTG 57.089 29.630 22.55 16.51 0.00 2.74
503 2420 8.520258 CAACCATTTCTAAAATTAATGCGTACG 58.480 33.333 11.84 11.84 0.00 3.67
504 2421 8.318167 GCAACCATTTCTAAAATTAATGCGTAC 58.682 33.333 0.00 0.00 0.00 3.67
505 2422 7.489757 GGCAACCATTTCTAAAATTAATGCGTA 59.510 33.333 0.00 0.00 0.00 4.42
506 2423 6.312672 GGCAACCATTTCTAAAATTAATGCGT 59.687 34.615 0.00 0.00 0.00 5.24
507 2424 6.507771 CGGCAACCATTTCTAAAATTAATGCG 60.508 38.462 0.00 0.00 0.00 4.73
508 2425 6.704819 CGGCAACCATTTCTAAAATTAATGC 58.295 36.000 0.00 0.00 0.00 3.56
509 2426 6.312426 TGCGGCAACCATTTCTAAAATTAATG 59.688 34.615 0.00 0.00 0.00 1.90
510 2427 6.402222 TGCGGCAACCATTTCTAAAATTAAT 58.598 32.000 0.00 0.00 0.00 1.40
511 2428 5.784177 TGCGGCAACCATTTCTAAAATTAA 58.216 33.333 0.00 0.00 0.00 1.40
512 2429 5.392767 TGCGGCAACCATTTCTAAAATTA 57.607 34.783 0.00 0.00 0.00 1.40
650 2570 0.464554 GGGCAGATTGTAGGGCACTC 60.465 60.000 0.00 0.00 0.00 3.51
694 2615 2.923020 GCGCGGTGAATGATTTTGATTT 59.077 40.909 8.83 0.00 0.00 2.17
762 2683 4.394729 ACGGCGAATCCCATTGTTTATAT 58.605 39.130 16.62 0.00 0.00 0.86
944 2871 1.538276 CGCTCGACGTTAAACCGTAT 58.462 50.000 0.00 0.00 41.98 3.06
952 2879 0.580578 CTAGCTAGCGCTCGACGTTA 59.419 55.000 16.34 2.74 45.15 3.18
968 2895 1.663643 CTCGCCTCGATAGCTAGCTAG 59.336 57.143 27.42 16.84 34.61 3.42
969 2896 1.676314 CCTCGCCTCGATAGCTAGCTA 60.676 57.143 26.09 26.09 34.61 3.32
970 2897 0.958382 CCTCGCCTCGATAGCTAGCT 60.958 60.000 23.12 23.12 34.61 3.32
971 2898 0.956410 TCCTCGCCTCGATAGCTAGC 60.956 60.000 6.62 6.62 34.61 3.42
972 2899 1.083489 CTCCTCGCCTCGATAGCTAG 58.917 60.000 0.00 4.48 34.61 3.42
973 2900 0.956410 GCTCCTCGCCTCGATAGCTA 60.956 60.000 0.00 0.00 39.76 3.32
974 2901 2.265182 GCTCCTCGCCTCGATAGCT 61.265 63.158 13.11 0.00 39.76 3.32
975 2902 1.872197 ATGCTCCTCGCCTCGATAGC 61.872 60.000 13.35 13.35 41.70 2.97
976 2903 0.600557 AATGCTCCTCGCCTCGATAG 59.399 55.000 0.00 0.00 38.05 2.08
1112 3039 3.499737 GCATCCACGCCTTGACCG 61.500 66.667 0.00 0.00 0.00 4.79
1113 3040 3.499737 CGCATCCACGCCTTGACC 61.500 66.667 0.00 0.00 0.00 4.02
1114 3041 3.499737 CCGCATCCACGCCTTGAC 61.500 66.667 0.00 0.00 0.00 3.18
1155 3082 1.728425 CCGTCACGATGATGCATATGG 59.272 52.381 0.00 0.00 32.19 2.74
1269 3196 1.916777 CACGGGACTTACCAGGGGT 60.917 63.158 0.00 0.00 41.20 4.95
1331 3275 7.255660 GCCGTAAAAATCACAAATATATCCCCA 60.256 37.037 0.00 0.00 0.00 4.96
1352 3308 1.477553 AGGACCGTTCATTAGCCGTA 58.522 50.000 0.00 0.00 0.00 4.02
2049 4015 1.920051 CGATGTTGATGCCGTCGAG 59.080 57.895 0.00 0.00 42.46 4.04
2256 4228 1.664659 CTCTTTGGAATCGCTGAGCAG 59.335 52.381 4.88 0.00 0.00 4.24
2333 4305 1.883084 GTCATAGGCGGCCTTGACG 60.883 63.158 30.32 18.47 34.61 4.35
2334 4306 0.811616 CTGTCATAGGCGGCCTTGAC 60.812 60.000 33.52 33.52 39.61 3.18
2335 4307 1.522092 CTGTCATAGGCGGCCTTGA 59.478 57.895 29.02 24.56 34.61 3.02
2336 4308 2.182842 GCTGTCATAGGCGGCCTTG 61.183 63.158 29.02 22.81 34.61 3.61
2337 4309 2.190578 GCTGTCATAGGCGGCCTT 59.809 61.111 29.02 12.29 34.61 4.35
2338 4310 4.227134 CGCTGTCATAGGCGGCCT 62.227 66.667 26.95 26.95 46.42 5.19
2343 4315 1.878522 CACCGTCGCTGTCATAGGC 60.879 63.158 0.00 0.00 0.00 3.93
2344 4316 1.226974 CCACCGTCGCTGTCATAGG 60.227 63.158 0.00 0.00 0.00 2.57
2345 4317 1.878522 GCCACCGTCGCTGTCATAG 60.879 63.158 0.00 0.00 0.00 2.23
2346 4318 2.183300 GCCACCGTCGCTGTCATA 59.817 61.111 0.00 0.00 0.00 2.15
2347 4319 3.695606 AGCCACCGTCGCTGTCAT 61.696 61.111 0.00 0.00 34.56 3.06
2348 4320 4.662961 CAGCCACCGTCGCTGTCA 62.663 66.667 9.75 0.00 46.97 3.58
2420 4392 3.299977 GCCGGACCAAACCAACCC 61.300 66.667 5.05 0.00 0.00 4.11
2489 4461 1.513178 CATCTTGTCGATGCGTACGTC 59.487 52.381 17.90 9.82 42.75 4.34
2501 4473 1.137872 ACGGCTCCATCTCATCTTGTC 59.862 52.381 0.00 0.00 0.00 3.18
2523 4495 0.613777 GCCTATTATGCCGCCCTACT 59.386 55.000 0.00 0.00 0.00 2.57
2615 4617 1.755179 AGCTTTTGGATGTCCATCGG 58.245 50.000 1.98 0.00 46.97 4.18
2704 4707 6.794158 GTCTATCAATGACATTGCTTATTCGC 59.206 38.462 21.17 5.11 40.05 4.70
2709 4712 8.260114 TCTTCTGTCTATCAATGACATTGCTTA 58.740 33.333 21.17 14.27 42.57 3.09
2711 4714 6.647229 TCTTCTGTCTATCAATGACATTGCT 58.353 36.000 21.17 15.23 42.57 3.91
2731 4741 8.608844 TTCTTCTCTTTATGTTTGTCCTCTTC 57.391 34.615 0.00 0.00 0.00 2.87
2732 4742 7.174080 GCTTCTTCTCTTTATGTTTGTCCTCTT 59.826 37.037 0.00 0.00 0.00 2.85
2774 4785 1.202940 ACCCTTTCTTCTGCTCCAACC 60.203 52.381 0.00 0.00 0.00 3.77
2798 4813 1.195442 TGCCGTGTGTTGGAGGGATA 61.195 55.000 0.00 0.00 0.00 2.59
2815 4830 8.968242 CCTTCTCTTTATGTTTGTTTAGTTTGC 58.032 33.333 0.00 0.00 0.00 3.68
2825 4840 4.156739 GGTGCCTCCTTCTCTTTATGTTTG 59.843 45.833 0.00 0.00 0.00 2.93
2826 4841 4.336280 GGTGCCTCCTTCTCTTTATGTTT 58.664 43.478 0.00 0.00 0.00 2.83
2827 4842 3.308473 GGGTGCCTCCTTCTCTTTATGTT 60.308 47.826 0.00 0.00 36.25 2.71
2828 4843 2.239907 GGGTGCCTCCTTCTCTTTATGT 59.760 50.000 0.00 0.00 36.25 2.29
2829 4844 2.422093 GGGGTGCCTCCTTCTCTTTATG 60.422 54.545 0.00 0.00 36.25 1.90
2830 4845 1.847088 GGGGTGCCTCCTTCTCTTTAT 59.153 52.381 0.00 0.00 36.25 1.40
2831 4846 1.286248 GGGGTGCCTCCTTCTCTTTA 58.714 55.000 0.00 0.00 36.25 1.85
2832 4847 0.772124 TGGGGTGCCTCCTTCTCTTT 60.772 55.000 0.00 0.00 36.25 2.52
2833 4848 1.151810 TGGGGTGCCTCCTTCTCTT 60.152 57.895 0.00 0.00 36.25 2.85
2834 4849 1.920835 GTGGGGTGCCTCCTTCTCT 60.921 63.158 0.00 0.00 36.25 3.10
2835 4850 0.617820 TAGTGGGGTGCCTCCTTCTC 60.618 60.000 0.00 0.00 36.25 2.87
2836 4851 0.178873 TTAGTGGGGTGCCTCCTTCT 60.179 55.000 0.00 0.00 36.25 2.85
2837 4852 0.253327 CTTAGTGGGGTGCCTCCTTC 59.747 60.000 0.00 0.00 36.25 3.46
2838 4853 0.475828 ACTTAGTGGGGTGCCTCCTT 60.476 55.000 0.00 0.00 36.25 3.36
2839 4854 1.161113 ACTTAGTGGGGTGCCTCCT 59.839 57.895 0.00 0.00 36.25 3.69
2840 4855 1.299976 CACTTAGTGGGGTGCCTCC 59.700 63.158 4.14 0.00 0.00 4.30
2841 4856 0.321653 CACACTTAGTGGGGTGCCTC 60.322 60.000 17.21 0.00 44.69 4.70
2842 4857 1.761174 CACACTTAGTGGGGTGCCT 59.239 57.895 17.21 0.00 44.69 4.75
2843 4858 4.397348 CACACTTAGTGGGGTGCC 57.603 61.111 17.21 0.00 44.69 5.01
2851 4866 3.853207 TCTACTCCAACCCACACTTAGT 58.147 45.455 0.00 0.00 0.00 2.24
2852 4867 4.527038 TCTTCTACTCCAACCCACACTTAG 59.473 45.833 0.00 0.00 0.00 2.18
2853 4868 4.485875 TCTTCTACTCCAACCCACACTTA 58.514 43.478 0.00 0.00 0.00 2.24
2854 4869 3.314693 TCTTCTACTCCAACCCACACTT 58.685 45.455 0.00 0.00 0.00 3.16
2855 4870 2.972348 TCTTCTACTCCAACCCACACT 58.028 47.619 0.00 0.00 0.00 3.55
2856 4871 3.764237 TTCTTCTACTCCAACCCACAC 57.236 47.619 0.00 0.00 0.00 3.82
2857 4872 3.072476 CCTTTCTTCTACTCCAACCCACA 59.928 47.826 0.00 0.00 0.00 4.17
2858 4873 3.559384 CCCTTTCTTCTACTCCAACCCAC 60.559 52.174 0.00 0.00 0.00 4.61
2859 4874 2.642807 CCCTTTCTTCTACTCCAACCCA 59.357 50.000 0.00 0.00 0.00 4.51
2860 4875 2.643304 ACCCTTTCTTCTACTCCAACCC 59.357 50.000 0.00 0.00 0.00 4.11
2861 4876 3.676093 CACCCTTTCTTCTACTCCAACC 58.324 50.000 0.00 0.00 0.00 3.77
2862 4877 3.075148 GCACCCTTTCTTCTACTCCAAC 58.925 50.000 0.00 0.00 0.00 3.77
2863 4878 2.979678 AGCACCCTTTCTTCTACTCCAA 59.020 45.455 0.00 0.00 0.00 3.53
2864 4879 2.621070 AGCACCCTTTCTTCTACTCCA 58.379 47.619 0.00 0.00 0.00 3.86
2865 4880 3.704800 AAGCACCCTTTCTTCTACTCC 57.295 47.619 0.00 0.00 0.00 3.85
2866 4881 5.361427 GGATAAGCACCCTTTCTTCTACTC 58.639 45.833 0.00 0.00 32.47 2.59
2867 4882 4.164413 GGGATAAGCACCCTTTCTTCTACT 59.836 45.833 0.00 0.00 43.65 2.57
2868 4883 4.452825 GGGATAAGCACCCTTTCTTCTAC 58.547 47.826 0.00 0.00 43.65 2.59
2869 4884 4.772886 GGGATAAGCACCCTTTCTTCTA 57.227 45.455 0.00 0.00 43.65 2.10
2870 4885 3.653835 GGGATAAGCACCCTTTCTTCT 57.346 47.619 0.00 0.00 43.65 2.85
2879 4894 1.004277 TGTGTTGGAGGGATAAGCACC 59.996 52.381 0.00 0.00 0.00 5.01
2880 4895 2.489938 TGTGTTGGAGGGATAAGCAC 57.510 50.000 0.00 0.00 0.00 4.40
2881 4896 3.003394 CATGTGTTGGAGGGATAAGCA 57.997 47.619 0.00 0.00 0.00 3.91
2893 4908 3.485378 CGTGTTTAGTTTGCCATGTGTTG 59.515 43.478 0.00 0.00 0.00 3.33
2894 4909 3.701241 CGTGTTTAGTTTGCCATGTGTT 58.299 40.909 0.00 0.00 0.00 3.32
2895 4910 2.542824 GCGTGTTTAGTTTGCCATGTGT 60.543 45.455 0.00 0.00 0.00 3.72
2896 4911 2.050691 GCGTGTTTAGTTTGCCATGTG 58.949 47.619 0.00 0.00 0.00 3.21
2897 4912 1.000717 GGCGTGTTTAGTTTGCCATGT 60.001 47.619 0.00 0.00 45.06 3.21
2898 4913 1.696988 GGCGTGTTTAGTTTGCCATG 58.303 50.000 0.00 0.00 45.06 3.66
2901 4916 1.135774 GCTAGGCGTGTTTAGTTTGCC 60.136 52.381 0.00 0.00 46.07 4.52
2902 4917 1.135774 GGCTAGGCGTGTTTAGTTTGC 60.136 52.381 0.00 0.00 0.00 3.68
2903 4918 1.467342 GGGCTAGGCGTGTTTAGTTTG 59.533 52.381 10.58 0.00 0.00 2.93
2904 4919 1.072648 TGGGCTAGGCGTGTTTAGTTT 59.927 47.619 10.58 0.00 0.00 2.66
2905 4920 0.688487 TGGGCTAGGCGTGTTTAGTT 59.312 50.000 10.58 0.00 0.00 2.24
2906 4921 0.688487 TTGGGCTAGGCGTGTTTAGT 59.312 50.000 10.58 0.00 0.00 2.24
2907 4922 1.940613 GATTGGGCTAGGCGTGTTTAG 59.059 52.381 10.58 0.00 0.00 1.85
2908 4923 1.557832 AGATTGGGCTAGGCGTGTTTA 59.442 47.619 10.58 0.00 0.00 2.01
2909 4924 0.328258 AGATTGGGCTAGGCGTGTTT 59.672 50.000 10.58 0.00 0.00 2.83
2910 4925 0.107654 GAGATTGGGCTAGGCGTGTT 60.108 55.000 10.58 0.00 0.00 3.32
2911 4926 1.264749 TGAGATTGGGCTAGGCGTGT 61.265 55.000 10.58 0.00 0.00 4.49
2940 4955 2.421775 TGTGACACGACATTTTGTGCTT 59.578 40.909 0.22 0.00 40.47 3.91
2955 4970 6.222038 GAGTATCCTACTTTGGATGTGACA 57.778 41.667 6.32 0.00 45.58 3.58
2981 4996 1.068434 CCCATGTTTTGGTCGTGCTTT 59.932 47.619 0.00 0.00 44.83 3.51
2985 5000 1.288752 GCCCCATGTTTTGGTCGTG 59.711 57.895 0.00 0.00 44.83 4.35
2991 5006 4.550076 TCTAATTTGGCCCCATGTTTTG 57.450 40.909 0.00 0.00 0.00 2.44
2999 5014 2.357952 GACGTTGATCTAATTTGGCCCC 59.642 50.000 0.00 0.00 0.00 5.80
3002 5017 4.394920 TCCTTGACGTTGATCTAATTTGGC 59.605 41.667 0.00 0.00 0.00 4.52
3015 5030 0.677842 ACTAGCCGTTCCTTGACGTT 59.322 50.000 0.00 0.00 41.26 3.99
3029 5052 0.391793 GGTTCCTGCTGTCCACTAGC 60.392 60.000 0.00 0.00 41.49 3.42
3031 5054 0.541063 TCGGTTCCTGCTGTCCACTA 60.541 55.000 0.00 0.00 0.00 2.74
3061 5104 1.880027 GTCACCTTCATTGCTCGGTTT 59.120 47.619 0.00 0.00 0.00 3.27
3078 5121 1.098712 GGTTGGTCTTTGTGGCGTCA 61.099 55.000 0.00 0.00 0.00 4.35
3080 5123 1.826487 GGGTTGGTCTTTGTGGCGT 60.826 57.895 0.00 0.00 0.00 5.68
3087 5130 1.064825 ATCCACTCGGGTTGGTCTTT 58.935 50.000 0.00 0.00 38.11 2.52
3113 5182 1.079503 GATTTCAGCGCTTCGGTCTT 58.920 50.000 7.50 0.00 34.62 3.01
3147 5218 0.683179 GGAACCCCAATCCCCTTTCG 60.683 60.000 0.00 0.00 0.00 3.46
3205 5276 1.137086 GATCTGCCGGCTTTGACTCTA 59.863 52.381 29.70 1.91 0.00 2.43
3206 5277 0.107945 GATCTGCCGGCTTTGACTCT 60.108 55.000 29.70 8.36 0.00 3.24
3226 5297 0.179189 GATTTGCCGGCTTTGACTCG 60.179 55.000 29.70 0.00 0.00 4.18
3227 5298 1.131315 GAGATTTGCCGGCTTTGACTC 59.869 52.381 29.70 22.92 0.00 3.36
3228 5299 1.168714 GAGATTTGCCGGCTTTGACT 58.831 50.000 29.70 19.27 0.00 3.41
3229 5300 0.179189 CGAGATTTGCCGGCTTTGAC 60.179 55.000 29.70 14.83 0.00 3.18
3230 5301 1.305219 CCGAGATTTGCCGGCTTTGA 61.305 55.000 29.70 11.07 39.22 2.69
3231 5302 1.137404 CCGAGATTTGCCGGCTTTG 59.863 57.895 29.70 11.30 39.22 2.77
3232 5303 2.046285 CCCGAGATTTGCCGGCTTT 61.046 57.895 29.70 12.35 44.07 3.51
3233 5304 1.906105 TACCCGAGATTTGCCGGCTT 61.906 55.000 29.70 12.77 44.07 4.35
3234 5305 2.311688 CTACCCGAGATTTGCCGGCT 62.312 60.000 29.70 7.33 44.07 5.52
3235 5306 1.887707 CTACCCGAGATTTGCCGGC 60.888 63.158 22.73 22.73 44.07 6.13
3236 5307 1.227556 CCTACCCGAGATTTGCCGG 60.228 63.158 0.00 0.00 44.94 6.13
3237 5308 1.227556 CCCTACCCGAGATTTGCCG 60.228 63.158 0.00 0.00 0.00 5.69
3238 5309 1.148498 CCCCTACCCGAGATTTGCC 59.852 63.158 0.00 0.00 0.00 4.52
3239 5310 1.148498 CCCCCTACCCGAGATTTGC 59.852 63.158 0.00 0.00 0.00 3.68
3240 5311 0.468648 GACCCCCTACCCGAGATTTG 59.531 60.000 0.00 0.00 0.00 2.32
3241 5312 0.693430 GGACCCCCTACCCGAGATTT 60.693 60.000 0.00 0.00 0.00 2.17
3242 5313 1.074699 GGACCCCCTACCCGAGATT 60.075 63.158 0.00 0.00 0.00 2.40
3243 5314 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
3244 5315 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
3255 5326 0.471401 AGACTATTAGCCCGGGACCC 60.471 60.000 29.31 6.57 0.00 4.46
3263 5334 6.759497 ACCATTGTTTCAAGACTATTAGCC 57.241 37.500 0.00 0.00 0.00 3.93
3264 5335 7.065803 TGCTACCATTGTTTCAAGACTATTAGC 59.934 37.037 0.00 0.00 29.61 3.09
3268 5339 7.094205 CCTTTGCTACCATTGTTTCAAGACTAT 60.094 37.037 0.00 0.00 0.00 2.12
3276 5347 6.024552 TGAATCCTTTGCTACCATTGTTTC 57.975 37.500 0.00 0.00 0.00 2.78
3317 5393 1.740296 GGCGAGGCAAGCGTAGAAA 60.740 57.895 0.00 0.00 35.00 2.52
3318 5394 2.125673 GGCGAGGCAAGCGTAGAA 60.126 61.111 0.00 0.00 35.00 2.10
3320 5396 2.279502 TAGTGGCGAGGCAAGCGTAG 62.280 60.000 0.00 0.00 35.00 3.51
3338 5414 8.887036 ATCAGCAAAATGACGATGTACTTATA 57.113 30.769 0.00 0.00 30.46 0.98
3406 5482 8.690840 GCACAGAAATACTTTGTGTTTGATAAC 58.309 33.333 5.83 0.00 43.65 1.89
3425 5504 3.004839 GCTATCTCATACCGAGCACAGAA 59.995 47.826 0.00 0.00 41.98 3.02
3430 5509 3.057245 GTCATGCTATCTCATACCGAGCA 60.057 47.826 0.00 0.00 46.42 4.26
3441 5520 4.406972 TGTCAAAGCTAGGTCATGCTATCT 59.593 41.667 0.00 0.00 38.75 1.98
3459 5538 8.819015 CATTTTTGAGAATTGATGTGTTGTCAA 58.181 29.630 0.00 0.00 39.65 3.18
3483 5562 1.772182 GCGCGTATGCTTCTAGACAT 58.228 50.000 8.43 0.00 39.65 3.06
3484 5563 0.591488 CGCGCGTATGCTTCTAGACA 60.591 55.000 24.19 0.00 39.65 3.41
3485 5564 1.867193 GCGCGCGTATGCTTCTAGAC 61.867 60.000 32.35 5.47 39.65 2.59
3486 5565 1.657487 GCGCGCGTATGCTTCTAGA 60.657 57.895 32.35 0.00 39.65 2.43
3487 5566 2.649257 GGCGCGCGTATGCTTCTAG 61.649 63.158 32.35 0.00 39.65 2.43
3488 5567 2.622903 AAGGCGCGCGTATGCTTCTA 62.623 55.000 32.35 0.00 39.65 2.10
3489 5568 4.514577 AGGCGCGCGTATGCTTCT 62.515 61.111 32.35 10.74 39.65 2.85
3490 5569 3.564027 AAGGCGCGCGTATGCTTC 61.564 61.111 32.35 12.47 39.65 3.86
3491 5570 3.864686 CAAGGCGCGCGTATGCTT 61.865 61.111 32.35 19.64 39.65 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.