Multiple sequence alignment - TraesCS1B01G150700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G150700 chr1B 100.000 3494 0 0 1 3494 231342275 231338782 0.000000e+00 6453
1 TraesCS1B01G150700 chr1B 97.135 2513 63 2 990 3494 580880 578369 0.000000e+00 4233
2 TraesCS1B01G150700 chr1B 94.038 738 42 2 1 737 529342091 529342827 0.000000e+00 1118
3 TraesCS1B01G150700 chr4B 97.527 2507 51 2 996 3494 636065178 636062675 0.000000e+00 4276
4 TraesCS1B01G150700 chr4B 94.166 737 42 1 1 737 154266626 154267361 0.000000e+00 1122
5 TraesCS1B01G150700 chr6B 97.214 2513 60 3 990 3494 17676489 17678999 0.000000e+00 4244
6 TraesCS1B01G150700 chr6B 96.976 2513 67 2 990 3494 461402520 461400009 0.000000e+00 4211
7 TraesCS1B01G150700 chr6B 97.323 1345 28 3 2158 3494 688727799 688729143 0.000000e+00 2278
8 TraesCS1B01G150700 chr6B 94.521 730 39 1 5 734 487725638 487726366 0.000000e+00 1125
9 TraesCS1B01G150700 chr6B 94.142 734 42 1 4 737 652463118 652463850 0.000000e+00 1116
10 TraesCS1B01G150700 chr7A 96.962 2502 67 2 1001 3494 46183537 46181037 0.000000e+00 4191
11 TraesCS1B01G150700 chr1A 96.643 2502 76 1 1001 3494 28906081 28903580 0.000000e+00 4148
12 TraesCS1B01G150700 chr6A 96.563 2502 76 3 1001 3494 38429650 38427151 0.000000e+00 4135
13 TraesCS1B01G150700 chr6A 96.754 2218 63 2 992 3201 3644275 3646491 0.000000e+00 3688
14 TraesCS1B01G150700 chr3A 96.622 2487 74 3 992 3469 610428357 610430842 0.000000e+00 4119
15 TraesCS1B01G150700 chr7B 97.462 1891 40 1 1612 3494 637244687 637242797 0.000000e+00 3219
16 TraesCS1B01G150700 chr7B 94.437 737 40 1 1 737 243131753 243132488 0.000000e+00 1133
17 TraesCS1B01G150700 chr7B 94.166 737 42 1 1 737 425490584 425489849 0.000000e+00 1122
18 TraesCS1B01G150700 chrUn 86.744 1471 182 4 2015 3476 386315703 386317169 0.000000e+00 1624
19 TraesCS1B01G150700 chr5B 94.437 737 40 1 1 737 410423864 410423129 0.000000e+00 1133
20 TraesCS1B01G150700 chr5B 94.030 737 43 1 1 737 431097723 431098458 0.000000e+00 1116
21 TraesCS1B01G150700 chr2B 94.030 737 43 1 1 737 474588661 474589396 0.000000e+00 1116
22 TraesCS1B01G150700 chr1D 90.204 245 7 9 741 984 366197198 366197426 1.580000e-78 303


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G150700 chr1B 231338782 231342275 3493 True 6453 6453 100.000 1 3494 1 chr1B.!!$R2 3493
1 TraesCS1B01G150700 chr1B 578369 580880 2511 True 4233 4233 97.135 990 3494 1 chr1B.!!$R1 2504
2 TraesCS1B01G150700 chr1B 529342091 529342827 736 False 1118 1118 94.038 1 737 1 chr1B.!!$F1 736
3 TraesCS1B01G150700 chr4B 636062675 636065178 2503 True 4276 4276 97.527 996 3494 1 chr4B.!!$R1 2498
4 TraesCS1B01G150700 chr4B 154266626 154267361 735 False 1122 1122 94.166 1 737 1 chr4B.!!$F1 736
5 TraesCS1B01G150700 chr6B 17676489 17678999 2510 False 4244 4244 97.214 990 3494 1 chr6B.!!$F1 2504
6 TraesCS1B01G150700 chr6B 461400009 461402520 2511 True 4211 4211 96.976 990 3494 1 chr6B.!!$R1 2504
7 TraesCS1B01G150700 chr6B 688727799 688729143 1344 False 2278 2278 97.323 2158 3494 1 chr6B.!!$F4 1336
8 TraesCS1B01G150700 chr6B 487725638 487726366 728 False 1125 1125 94.521 5 734 1 chr6B.!!$F2 729
9 TraesCS1B01G150700 chr6B 652463118 652463850 732 False 1116 1116 94.142 4 737 1 chr6B.!!$F3 733
10 TraesCS1B01G150700 chr7A 46181037 46183537 2500 True 4191 4191 96.962 1001 3494 1 chr7A.!!$R1 2493
11 TraesCS1B01G150700 chr1A 28903580 28906081 2501 True 4148 4148 96.643 1001 3494 1 chr1A.!!$R1 2493
12 TraesCS1B01G150700 chr6A 38427151 38429650 2499 True 4135 4135 96.563 1001 3494 1 chr6A.!!$R1 2493
13 TraesCS1B01G150700 chr6A 3644275 3646491 2216 False 3688 3688 96.754 992 3201 1 chr6A.!!$F1 2209
14 TraesCS1B01G150700 chr3A 610428357 610430842 2485 False 4119 4119 96.622 992 3469 1 chr3A.!!$F1 2477
15 TraesCS1B01G150700 chr7B 637242797 637244687 1890 True 3219 3219 97.462 1612 3494 1 chr7B.!!$R2 1882
16 TraesCS1B01G150700 chr7B 243131753 243132488 735 False 1133 1133 94.437 1 737 1 chr7B.!!$F1 736
17 TraesCS1B01G150700 chr7B 425489849 425490584 735 True 1122 1122 94.166 1 737 1 chr7B.!!$R1 736
18 TraesCS1B01G150700 chrUn 386315703 386317169 1466 False 1624 1624 86.744 2015 3476 1 chrUn.!!$F1 1461
19 TraesCS1B01G150700 chr5B 410423129 410423864 735 True 1133 1133 94.437 1 737 1 chr5B.!!$R1 736
20 TraesCS1B01G150700 chr5B 431097723 431098458 735 False 1116 1116 94.030 1 737 1 chr5B.!!$F1 736
21 TraesCS1B01G150700 chr2B 474588661 474589396 735 False 1116 1116 94.030 1 737 1 chr2B.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 856 0.037975 CGCTTGCCCTCTTTTGCATT 60.038 50.000 0.0 0.0 37.33 3.56 F
856 858 1.001181 GCTTGCCCTCTTTTGCATTCA 59.999 47.619 0.0 0.0 37.33 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2203 1.867233 GCACCTTGTACGCCATGATAG 59.133 52.381 0.0 0.0 0.00 2.08 R
2758 2770 2.173569 AGCCTTGAACTCCAAAGTGACT 59.826 45.455 0.0 0.0 35.36 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.203877 TTCCGGTGCTGGGGTAGT 60.204 61.111 0.00 0.00 0.00 2.73
101 102 1.409661 GGTGCTGGGGTAGTTATTGGG 60.410 57.143 0.00 0.00 0.00 4.12
140 141 1.202582 GCTCAGCTACGTTCTCCAGAA 59.797 52.381 0.00 0.00 0.00 3.02
197 198 5.016173 TGAAGCACTTTTATATGGGTTGCT 58.984 37.500 0.00 0.00 0.00 3.91
237 238 1.683917 GTCTGTCGCCTCATGGTCTAT 59.316 52.381 0.00 0.00 35.27 1.98
246 247 0.668535 TCATGGTCTATGGCGACTCG 59.331 55.000 0.00 0.00 37.39 4.18
304 305 0.392336 CAGGAGCCCAGCTATGACTC 59.608 60.000 0.00 0.00 39.88 3.36
360 361 1.075601 TTGAGGGGTTGGAGCTTCAT 58.924 50.000 0.00 0.00 0.00 2.57
620 621 7.339212 AGTGCCTTACATTGCATACATTCTTAA 59.661 33.333 0.00 0.00 40.07 1.85
621 622 7.973388 GTGCCTTACATTGCATACATTCTTAAA 59.027 33.333 0.00 0.00 40.07 1.52
737 739 5.183904 GTGTAATTGGAGTCAGCCAGAAATT 59.816 40.000 0.00 0.00 39.52 1.82
738 740 6.374333 GTGTAATTGGAGTCAGCCAGAAATTA 59.626 38.462 0.00 0.00 39.52 1.40
739 741 5.904362 AATTGGAGTCAGCCAGAAATTAC 57.096 39.130 0.00 0.00 39.52 1.89
740 742 3.350219 TGGAGTCAGCCAGAAATTACC 57.650 47.619 0.00 0.00 33.10 2.85
741 743 2.642311 TGGAGTCAGCCAGAAATTACCA 59.358 45.455 0.00 0.00 33.10 3.25
742 744 3.274288 GGAGTCAGCCAGAAATTACCAG 58.726 50.000 0.00 0.00 0.00 4.00
743 745 3.307762 GGAGTCAGCCAGAAATTACCAGT 60.308 47.826 0.00 0.00 0.00 4.00
744 746 4.081087 GGAGTCAGCCAGAAATTACCAGTA 60.081 45.833 0.00 0.00 0.00 2.74
745 747 4.833390 AGTCAGCCAGAAATTACCAGTAC 58.167 43.478 0.00 0.00 0.00 2.73
746 748 4.532521 AGTCAGCCAGAAATTACCAGTACT 59.467 41.667 0.00 0.00 0.00 2.73
747 749 5.720041 AGTCAGCCAGAAATTACCAGTACTA 59.280 40.000 0.00 0.00 0.00 1.82
748 750 6.043411 GTCAGCCAGAAATTACCAGTACTAG 58.957 44.000 0.00 0.00 0.00 2.57
749 751 4.811557 CAGCCAGAAATTACCAGTACTAGC 59.188 45.833 0.00 0.00 0.00 3.42
750 752 4.469945 AGCCAGAAATTACCAGTACTAGCA 59.530 41.667 0.00 0.00 0.00 3.49
751 753 4.811557 GCCAGAAATTACCAGTACTAGCAG 59.188 45.833 0.00 0.00 0.00 4.24
752 754 4.811557 CCAGAAATTACCAGTACTAGCAGC 59.188 45.833 0.00 0.00 0.00 5.25
753 755 5.419542 CAGAAATTACCAGTACTAGCAGCA 58.580 41.667 0.00 0.00 0.00 4.41
754 756 5.521735 CAGAAATTACCAGTACTAGCAGCAG 59.478 44.000 0.00 0.00 0.00 4.24
755 757 5.422331 AGAAATTACCAGTACTAGCAGCAGA 59.578 40.000 0.00 0.00 0.00 4.26
756 758 4.657436 ATTACCAGTACTAGCAGCAGAC 57.343 45.455 0.00 0.00 0.00 3.51
757 759 1.924731 ACCAGTACTAGCAGCAGACA 58.075 50.000 0.00 0.00 0.00 3.41
758 760 1.821753 ACCAGTACTAGCAGCAGACAG 59.178 52.381 0.00 0.00 0.00 3.51
759 761 1.821753 CCAGTACTAGCAGCAGACAGT 59.178 52.381 0.00 0.00 0.00 3.55
760 762 2.232452 CCAGTACTAGCAGCAGACAGTT 59.768 50.000 0.00 0.00 0.00 3.16
761 763 3.249091 CAGTACTAGCAGCAGACAGTTG 58.751 50.000 0.00 0.00 0.00 3.16
767 769 3.859650 CAGCAGACAGTTGCCAAAG 57.140 52.632 4.63 0.00 45.18 2.77
768 770 0.313043 CAGCAGACAGTTGCCAAAGG 59.687 55.000 4.63 0.00 45.18 3.11
769 771 0.825010 AGCAGACAGTTGCCAAAGGG 60.825 55.000 4.63 0.00 45.18 3.95
770 772 1.809567 GCAGACAGTTGCCAAAGGGG 61.810 60.000 0.00 0.00 38.13 4.79
771 773 0.178992 CAGACAGTTGCCAAAGGGGA 60.179 55.000 0.00 0.00 40.01 4.81
772 774 0.555769 AGACAGTTGCCAAAGGGGAA 59.444 50.000 0.00 0.00 42.89 3.97
773 775 1.147817 AGACAGTTGCCAAAGGGGAAT 59.852 47.619 0.00 0.00 46.89 3.01
774 776 2.378547 AGACAGTTGCCAAAGGGGAATA 59.621 45.455 0.00 0.00 46.89 1.75
775 777 3.161866 GACAGTTGCCAAAGGGGAATAA 58.838 45.455 0.00 0.00 46.89 1.40
776 778 2.897326 ACAGTTGCCAAAGGGGAATAAC 59.103 45.455 0.00 0.00 46.89 1.89
777 779 3.165071 CAGTTGCCAAAGGGGAATAACT 58.835 45.455 0.00 0.00 46.89 2.24
778 780 4.202631 ACAGTTGCCAAAGGGGAATAACTA 60.203 41.667 0.00 0.00 46.89 2.24
779 781 4.770010 CAGTTGCCAAAGGGGAATAACTAA 59.230 41.667 0.00 0.00 46.89 2.24
780 782 5.245075 CAGTTGCCAAAGGGGAATAACTAAA 59.755 40.000 0.00 0.00 46.89 1.85
781 783 5.841783 AGTTGCCAAAGGGGAATAACTAAAA 59.158 36.000 0.00 0.00 46.89 1.52
782 784 6.327887 AGTTGCCAAAGGGGAATAACTAAAAA 59.672 34.615 0.00 0.00 46.89 1.94
783 785 6.104146 TGCCAAAGGGGAATAACTAAAAAC 57.896 37.500 0.00 0.00 40.01 2.43
784 786 5.841783 TGCCAAAGGGGAATAACTAAAAACT 59.158 36.000 0.00 0.00 40.01 2.66
785 787 6.014925 TGCCAAAGGGGAATAACTAAAAACTC 60.015 38.462 0.00 0.00 40.01 3.01
786 788 6.210784 GCCAAAGGGGAATAACTAAAAACTCT 59.789 38.462 0.00 0.00 40.01 3.24
787 789 7.256190 GCCAAAGGGGAATAACTAAAAACTCTT 60.256 37.037 0.00 0.00 40.01 2.85
788 790 8.088365 CCAAAGGGGAATAACTAAAAACTCTTG 58.912 37.037 0.00 0.00 40.01 3.02
789 791 6.835819 AGGGGAATAACTAAAAACTCTTGC 57.164 37.500 0.00 0.00 0.00 4.01
790 792 5.715279 AGGGGAATAACTAAAAACTCTTGCC 59.285 40.000 0.00 0.00 0.00 4.52
791 793 5.105473 GGGGAATAACTAAAAACTCTTGCCC 60.105 44.000 0.00 0.00 35.95 5.36
792 794 5.392703 GGGAATAACTAAAAACTCTTGCCCG 60.393 44.000 0.00 0.00 0.00 6.13
793 795 5.413523 GGAATAACTAAAAACTCTTGCCCGA 59.586 40.000 0.00 0.00 0.00 5.14
794 796 6.095021 GGAATAACTAAAAACTCTTGCCCGAT 59.905 38.462 0.00 0.00 0.00 4.18
795 797 6.679327 ATAACTAAAAACTCTTGCCCGATC 57.321 37.500 0.00 0.00 0.00 3.69
796 798 4.287766 ACTAAAAACTCTTGCCCGATCT 57.712 40.909 0.00 0.00 0.00 2.75
797 799 4.254492 ACTAAAAACTCTTGCCCGATCTC 58.746 43.478 0.00 0.00 0.00 2.75
798 800 3.425162 AAAAACTCTTGCCCGATCTCT 57.575 42.857 0.00 0.00 0.00 3.10
799 801 4.553330 AAAAACTCTTGCCCGATCTCTA 57.447 40.909 0.00 0.00 0.00 2.43
800 802 4.762289 AAAACTCTTGCCCGATCTCTAT 57.238 40.909 0.00 0.00 0.00 1.98
801 803 4.329462 AAACTCTTGCCCGATCTCTATC 57.671 45.455 0.00 0.00 0.00 2.08
802 804 2.243810 ACTCTTGCCCGATCTCTATCC 58.756 52.381 0.00 0.00 0.00 2.59
803 805 2.242926 CTCTTGCCCGATCTCTATCCA 58.757 52.381 0.00 0.00 0.00 3.41
804 806 1.964223 TCTTGCCCGATCTCTATCCAC 59.036 52.381 0.00 0.00 0.00 4.02
805 807 1.967066 CTTGCCCGATCTCTATCCACT 59.033 52.381 0.00 0.00 0.00 4.00
806 808 2.971901 TGCCCGATCTCTATCCACTA 57.028 50.000 0.00 0.00 0.00 2.74
807 809 3.458044 TGCCCGATCTCTATCCACTAT 57.542 47.619 0.00 0.00 0.00 2.12
808 810 3.779444 TGCCCGATCTCTATCCACTATT 58.221 45.455 0.00 0.00 0.00 1.73
809 811 4.930696 TGCCCGATCTCTATCCACTATTA 58.069 43.478 0.00 0.00 0.00 0.98
810 812 4.705507 TGCCCGATCTCTATCCACTATTAC 59.294 45.833 0.00 0.00 0.00 1.89
811 813 4.098196 GCCCGATCTCTATCCACTATTACC 59.902 50.000 0.00 0.00 0.00 2.85
812 814 5.262009 CCCGATCTCTATCCACTATTACCA 58.738 45.833 0.00 0.00 0.00 3.25
813 815 5.358442 CCCGATCTCTATCCACTATTACCAG 59.642 48.000 0.00 0.00 0.00 4.00
814 816 5.946972 CCGATCTCTATCCACTATTACCAGT 59.053 44.000 0.00 0.00 0.00 4.00
815 817 7.110810 CCGATCTCTATCCACTATTACCAGTA 58.889 42.308 0.00 0.00 0.00 2.74
816 818 7.281324 CCGATCTCTATCCACTATTACCAGTAG 59.719 44.444 0.00 0.00 0.00 2.57
817 819 8.041919 CGATCTCTATCCACTATTACCAGTAGA 58.958 40.741 0.00 0.00 0.00 2.59
818 820 9.169592 GATCTCTATCCACTATTACCAGTAGAC 57.830 40.741 0.00 0.00 0.00 2.59
819 821 8.042286 TCTCTATCCACTATTACCAGTAGACA 57.958 38.462 0.00 0.00 0.00 3.41
820 822 7.937942 TCTCTATCCACTATTACCAGTAGACAC 59.062 40.741 0.00 0.00 0.00 3.67
821 823 7.813331 TCTATCCACTATTACCAGTAGACACT 58.187 38.462 0.00 0.00 34.42 3.55
822 824 8.942033 TCTATCCACTATTACCAGTAGACACTA 58.058 37.037 0.00 0.00 32.21 2.74
823 825 9.221933 CTATCCACTATTACCAGTAGACACTAG 57.778 40.741 0.00 0.00 32.21 2.57
824 826 7.204243 TCCACTATTACCAGTAGACACTAGA 57.796 40.000 0.00 0.00 32.21 2.43
825 827 7.052873 TCCACTATTACCAGTAGACACTAGAC 58.947 42.308 0.00 0.00 32.21 2.59
826 828 6.827251 CCACTATTACCAGTAGACACTAGACA 59.173 42.308 0.00 0.00 32.21 3.41
827 829 7.012515 CCACTATTACCAGTAGACACTAGACAG 59.987 44.444 0.00 0.00 32.21 3.51
828 830 7.553402 CACTATTACCAGTAGACACTAGACAGT 59.447 40.741 0.00 0.00 32.21 3.55
829 831 8.766476 ACTATTACCAGTAGACACTAGACAGTA 58.234 37.037 0.00 0.00 32.21 2.74
830 832 9.610705 CTATTACCAGTAGACACTAGACAGTAA 57.389 37.037 0.00 0.00 32.21 2.24
831 833 7.678947 TTACCAGTAGACACTAGACAGTAAC 57.321 40.000 0.00 0.00 32.21 2.50
832 834 5.628130 ACCAGTAGACACTAGACAGTAACA 58.372 41.667 0.00 0.00 32.21 2.41
833 835 6.066690 ACCAGTAGACACTAGACAGTAACAA 58.933 40.000 0.00 0.00 32.21 2.83
834 836 6.720288 ACCAGTAGACACTAGACAGTAACAAT 59.280 38.462 0.00 0.00 32.21 2.71
835 837 7.094291 ACCAGTAGACACTAGACAGTAACAATC 60.094 40.741 0.00 0.00 32.21 2.67
836 838 6.962116 CAGTAGACACTAGACAGTAACAATCG 59.038 42.308 0.00 0.00 32.21 3.34
837 839 4.734917 AGACACTAGACAGTAACAATCGC 58.265 43.478 0.00 0.00 32.21 4.58
838 840 4.459685 AGACACTAGACAGTAACAATCGCT 59.540 41.667 0.00 0.00 32.21 4.93
839 841 5.047943 AGACACTAGACAGTAACAATCGCTT 60.048 40.000 0.00 0.00 32.21 4.68
840 842 4.923871 ACACTAGACAGTAACAATCGCTTG 59.076 41.667 0.00 0.00 34.28 4.01
841 843 3.927142 ACTAGACAGTAACAATCGCTTGC 59.073 43.478 0.00 0.00 32.22 4.01
842 844 2.076863 AGACAGTAACAATCGCTTGCC 58.923 47.619 0.00 0.00 35.69 4.52
843 845 1.130561 GACAGTAACAATCGCTTGCCC 59.869 52.381 0.00 0.00 35.69 5.36
844 846 1.271379 ACAGTAACAATCGCTTGCCCT 60.271 47.619 0.00 0.00 35.69 5.19
845 847 1.398390 CAGTAACAATCGCTTGCCCTC 59.602 52.381 0.00 0.00 35.69 4.30
846 848 1.279271 AGTAACAATCGCTTGCCCTCT 59.721 47.619 0.00 0.00 35.69 3.69
847 849 2.084546 GTAACAATCGCTTGCCCTCTT 58.915 47.619 0.00 0.00 35.69 2.85
848 850 1.620822 AACAATCGCTTGCCCTCTTT 58.379 45.000 0.00 0.00 35.69 2.52
849 851 1.620822 ACAATCGCTTGCCCTCTTTT 58.379 45.000 0.00 0.00 35.69 2.27
850 852 1.270550 ACAATCGCTTGCCCTCTTTTG 59.729 47.619 0.00 0.00 35.69 2.44
851 853 0.244721 AATCGCTTGCCCTCTTTTGC 59.755 50.000 0.00 0.00 0.00 3.68
852 854 0.895100 ATCGCTTGCCCTCTTTTGCA 60.895 50.000 0.00 0.00 35.27 4.08
853 855 0.895100 TCGCTTGCCCTCTTTTGCAT 60.895 50.000 0.00 0.00 37.33 3.96
854 856 0.037975 CGCTTGCCCTCTTTTGCATT 60.038 50.000 0.00 0.00 37.33 3.56
855 857 1.718396 GCTTGCCCTCTTTTGCATTC 58.282 50.000 0.00 0.00 37.33 2.67
856 858 1.001181 GCTTGCCCTCTTTTGCATTCA 59.999 47.619 0.00 0.00 37.33 2.57
857 859 2.354403 GCTTGCCCTCTTTTGCATTCAT 60.354 45.455 0.00 0.00 37.33 2.57
858 860 3.518590 CTTGCCCTCTTTTGCATTCATC 58.481 45.455 0.00 0.00 37.33 2.92
859 861 1.473677 TGCCCTCTTTTGCATTCATCG 59.526 47.619 0.00 0.00 31.31 3.84
860 862 1.800286 GCCCTCTTTTGCATTCATCGC 60.800 52.381 0.00 0.00 0.00 4.58
861 863 1.202336 CCCTCTTTTGCATTCATCGCC 60.202 52.381 0.00 0.00 0.00 5.54
862 864 1.747355 CCTCTTTTGCATTCATCGCCT 59.253 47.619 0.00 0.00 0.00 5.52
863 865 2.223433 CCTCTTTTGCATTCATCGCCTC 60.223 50.000 0.00 0.00 0.00 4.70
864 866 2.421073 CTCTTTTGCATTCATCGCCTCA 59.579 45.455 0.00 0.00 0.00 3.86
865 867 3.018856 TCTTTTGCATTCATCGCCTCAT 58.981 40.909 0.00 0.00 0.00 2.90
866 868 3.065786 TCTTTTGCATTCATCGCCTCATC 59.934 43.478 0.00 0.00 0.00 2.92
867 869 2.336945 TTGCATTCATCGCCTCATCT 57.663 45.000 0.00 0.00 0.00 2.90
868 870 2.336945 TGCATTCATCGCCTCATCTT 57.663 45.000 0.00 0.00 0.00 2.40
869 871 2.646930 TGCATTCATCGCCTCATCTTT 58.353 42.857 0.00 0.00 0.00 2.52
870 872 2.615447 TGCATTCATCGCCTCATCTTTC 59.385 45.455 0.00 0.00 0.00 2.62
871 873 2.615447 GCATTCATCGCCTCATCTTTCA 59.385 45.455 0.00 0.00 0.00 2.69
872 874 3.252701 GCATTCATCGCCTCATCTTTCAT 59.747 43.478 0.00 0.00 0.00 2.57
873 875 4.613167 GCATTCATCGCCTCATCTTTCATC 60.613 45.833 0.00 0.00 0.00 2.92
874 876 3.825143 TCATCGCCTCATCTTTCATCA 57.175 42.857 0.00 0.00 0.00 3.07
875 877 3.461061 TCATCGCCTCATCTTTCATCAC 58.539 45.455 0.00 0.00 0.00 3.06
876 878 3.133542 TCATCGCCTCATCTTTCATCACT 59.866 43.478 0.00 0.00 0.00 3.41
877 879 4.342092 TCATCGCCTCATCTTTCATCACTA 59.658 41.667 0.00 0.00 0.00 2.74
878 880 4.736126 TCGCCTCATCTTTCATCACTAA 57.264 40.909 0.00 0.00 0.00 2.24
879 881 4.686972 TCGCCTCATCTTTCATCACTAAG 58.313 43.478 0.00 0.00 0.00 2.18
880 882 3.247173 CGCCTCATCTTTCATCACTAAGC 59.753 47.826 0.00 0.00 0.00 3.09
881 883 4.194640 GCCTCATCTTTCATCACTAAGCA 58.805 43.478 0.00 0.00 0.00 3.91
882 884 4.637534 GCCTCATCTTTCATCACTAAGCAA 59.362 41.667 0.00 0.00 0.00 3.91
883 885 5.124457 GCCTCATCTTTCATCACTAAGCAAA 59.876 40.000 0.00 0.00 0.00 3.68
884 886 6.549952 CCTCATCTTTCATCACTAAGCAAAC 58.450 40.000 0.00 0.00 0.00 2.93
885 887 6.149973 CCTCATCTTTCATCACTAAGCAAACA 59.850 38.462 0.00 0.00 0.00 2.83
886 888 7.308770 CCTCATCTTTCATCACTAAGCAAACAA 60.309 37.037 0.00 0.00 0.00 2.83
887 889 7.362662 TCATCTTTCATCACTAAGCAAACAAC 58.637 34.615 0.00 0.00 0.00 3.32
888 890 6.942532 TCTTTCATCACTAAGCAAACAACT 57.057 33.333 0.00 0.00 0.00 3.16
889 891 7.333528 TCTTTCATCACTAAGCAAACAACTT 57.666 32.000 0.00 0.00 0.00 2.66
890 892 7.771183 TCTTTCATCACTAAGCAAACAACTTT 58.229 30.769 0.00 0.00 0.00 2.66
891 893 8.250332 TCTTTCATCACTAAGCAAACAACTTTT 58.750 29.630 0.00 0.00 0.00 2.27
892 894 8.770438 TTTCATCACTAAGCAAACAACTTTTT 57.230 26.923 0.00 0.00 0.00 1.94
893 895 9.862371 TTTCATCACTAAGCAAACAACTTTTTA 57.138 25.926 0.00 0.00 0.00 1.52
894 896 9.862371 TTCATCACTAAGCAAACAACTTTTTAA 57.138 25.926 0.00 0.00 0.00 1.52
895 897 9.862371 TCATCACTAAGCAAACAACTTTTTAAA 57.138 25.926 0.00 0.00 0.00 1.52
896 898 9.900264 CATCACTAAGCAAACAACTTTTTAAAC 57.100 29.630 0.00 0.00 0.00 2.01
897 899 8.468720 TCACTAAGCAAACAACTTTTTAAACC 57.531 30.769 0.00 0.00 0.00 3.27
898 900 8.088981 TCACTAAGCAAACAACTTTTTAAACCA 58.911 29.630 0.00 0.00 0.00 3.67
899 901 8.379902 CACTAAGCAAACAACTTTTTAAACCAG 58.620 33.333 0.00 0.00 0.00 4.00
900 902 6.735678 AAGCAAACAACTTTTTAAACCAGG 57.264 33.333 0.00 0.00 0.00 4.45
901 903 4.634004 AGCAAACAACTTTTTAAACCAGGC 59.366 37.500 0.00 0.00 0.00 4.85
902 904 4.393371 GCAAACAACTTTTTAAACCAGGCA 59.607 37.500 0.00 0.00 0.00 4.75
903 905 5.065859 GCAAACAACTTTTTAAACCAGGCAT 59.934 36.000 0.00 0.00 0.00 4.40
904 906 6.714492 CAAACAACTTTTTAAACCAGGCATC 58.286 36.000 0.00 0.00 0.00 3.91
905 907 5.606348 ACAACTTTTTAAACCAGGCATCA 57.394 34.783 0.00 0.00 0.00 3.07
906 908 5.983540 ACAACTTTTTAAACCAGGCATCAA 58.016 33.333 0.00 0.00 0.00 2.57
907 909 6.410540 ACAACTTTTTAAACCAGGCATCAAA 58.589 32.000 0.00 0.00 0.00 2.69
908 910 6.881602 ACAACTTTTTAAACCAGGCATCAAAA 59.118 30.769 0.00 0.00 0.00 2.44
909 911 7.065683 ACAACTTTTTAAACCAGGCATCAAAAG 59.934 33.333 10.83 10.83 36.34 2.27
910 912 6.649155 ACTTTTTAAACCAGGCATCAAAAGT 58.351 32.000 11.77 11.77 37.88 2.66
911 913 7.109501 ACTTTTTAAACCAGGCATCAAAAGTT 58.890 30.769 11.77 1.75 39.00 2.66
912 914 7.279981 ACTTTTTAAACCAGGCATCAAAAGTTC 59.720 33.333 11.77 0.00 39.00 3.01
913 915 5.860941 TTAAACCAGGCATCAAAAGTTCA 57.139 34.783 0.00 0.00 0.00 3.18
914 916 4.751767 AAACCAGGCATCAAAAGTTCAA 57.248 36.364 0.00 0.00 0.00 2.69
915 917 4.751767 AACCAGGCATCAAAAGTTCAAA 57.248 36.364 0.00 0.00 0.00 2.69
916 918 4.751767 ACCAGGCATCAAAAGTTCAAAA 57.248 36.364 0.00 0.00 0.00 2.44
917 919 4.441792 ACCAGGCATCAAAAGTTCAAAAC 58.558 39.130 0.00 0.00 0.00 2.43
918 920 4.081198 ACCAGGCATCAAAAGTTCAAAACA 60.081 37.500 0.00 0.00 0.00 2.83
919 921 4.270808 CCAGGCATCAAAAGTTCAAAACAC 59.729 41.667 0.00 0.00 0.00 3.32
920 922 4.869297 CAGGCATCAAAAGTTCAAAACACA 59.131 37.500 0.00 0.00 0.00 3.72
921 923 5.524646 CAGGCATCAAAAGTTCAAAACACAT 59.475 36.000 0.00 0.00 0.00 3.21
922 924 5.754890 AGGCATCAAAAGTTCAAAACACATC 59.245 36.000 0.00 0.00 0.00 3.06
923 925 5.523188 GGCATCAAAAGTTCAAAACACATCA 59.477 36.000 0.00 0.00 0.00 3.07
924 926 6.292488 GGCATCAAAAGTTCAAAACACATCAG 60.292 38.462 0.00 0.00 0.00 2.90
925 927 6.476380 GCATCAAAAGTTCAAAACACATCAGA 59.524 34.615 0.00 0.00 0.00 3.27
926 928 7.010367 GCATCAAAAGTTCAAAACACATCAGAA 59.990 33.333 0.00 0.00 0.00 3.02
927 929 7.810766 TCAAAAGTTCAAAACACATCAGAAC 57.189 32.000 0.00 0.00 38.99 3.01
928 930 7.374272 TCAAAAGTTCAAAACACATCAGAACA 58.626 30.769 0.00 0.00 40.63 3.18
929 931 8.034215 TCAAAAGTTCAAAACACATCAGAACAT 58.966 29.630 0.00 0.00 40.63 2.71
930 932 8.658609 CAAAAGTTCAAAACACATCAGAACATT 58.341 29.630 0.00 0.00 40.63 2.71
931 933 9.868277 AAAAGTTCAAAACACATCAGAACATTA 57.132 25.926 0.00 0.00 40.63 1.90
932 934 9.868277 AAAGTTCAAAACACATCAGAACATTAA 57.132 25.926 0.00 0.00 40.63 1.40
934 936 9.467258 AGTTCAAAACACATCAGAACATTAATG 57.533 29.630 14.01 14.01 40.63 1.90
935 937 7.872163 TCAAAACACATCAGAACATTAATGC 57.128 32.000 15.48 0.15 0.00 3.56
936 938 7.432059 TCAAAACACATCAGAACATTAATGCA 58.568 30.769 15.48 0.00 0.00 3.96
937 939 7.924947 TCAAAACACATCAGAACATTAATGCAA 59.075 29.630 15.48 0.00 0.00 4.08
938 940 8.549548 CAAAACACATCAGAACATTAATGCAAA 58.450 29.630 15.48 0.00 0.00 3.68
939 941 8.836268 AAACACATCAGAACATTAATGCAAAT 57.164 26.923 15.48 0.00 0.00 2.32
940 942 7.821595 ACACATCAGAACATTAATGCAAATG 57.178 32.000 15.48 13.28 41.65 2.32
941 943 7.604549 ACACATCAGAACATTAATGCAAATGA 58.395 30.769 15.48 13.82 38.84 2.57
942 944 8.255206 ACACATCAGAACATTAATGCAAATGAT 58.745 29.630 15.48 15.25 38.84 2.45
943 945 9.738832 CACATCAGAACATTAATGCAAATGATA 57.261 29.630 15.48 0.00 38.84 2.15
944 946 9.740239 ACATCAGAACATTAATGCAAATGATAC 57.260 29.630 15.48 7.94 38.84 2.24
945 947 9.188588 CATCAGAACATTAATGCAAATGATACC 57.811 33.333 15.48 4.28 38.84 2.73
946 948 8.291191 TCAGAACATTAATGCAAATGATACCA 57.709 30.769 15.48 0.00 38.84 3.25
947 949 8.747471 TCAGAACATTAATGCAAATGATACCAA 58.253 29.630 15.48 0.00 38.84 3.67
948 950 9.027129 CAGAACATTAATGCAAATGATACCAAG 57.973 33.333 15.48 0.00 38.84 3.61
949 951 8.970020 AGAACATTAATGCAAATGATACCAAGA 58.030 29.630 15.48 0.00 38.84 3.02
950 952 9.754382 GAACATTAATGCAAATGATACCAAGAT 57.246 29.630 15.48 0.00 38.84 2.40
951 953 9.754382 AACATTAATGCAAATGATACCAAGATC 57.246 29.630 15.48 0.00 38.84 2.75
952 954 8.916062 ACATTAATGCAAATGATACCAAGATCA 58.084 29.630 15.48 0.00 38.84 2.92
953 955 9.752961 CATTAATGCAAATGATACCAAGATCAA 57.247 29.630 1.74 0.00 39.25 2.57
955 957 9.806203 TTAATGCAAATGATACCAAGATCAAAG 57.194 29.630 0.00 0.00 39.25 2.77
956 958 6.839124 TGCAAATGATACCAAGATCAAAGT 57.161 33.333 0.00 0.00 39.25 2.66
957 959 6.855836 TGCAAATGATACCAAGATCAAAGTC 58.144 36.000 0.00 0.00 39.25 3.01
958 960 6.660521 TGCAAATGATACCAAGATCAAAGTCT 59.339 34.615 0.00 0.00 39.25 3.24
959 961 7.828717 TGCAAATGATACCAAGATCAAAGTCTA 59.171 33.333 0.00 0.00 39.25 2.59
960 962 8.125448 GCAAATGATACCAAGATCAAAGTCTAC 58.875 37.037 0.00 0.00 39.25 2.59
961 963 9.166173 CAAATGATACCAAGATCAAAGTCTACA 57.834 33.333 0.00 0.00 39.25 2.74
962 964 9.911788 AAATGATACCAAGATCAAAGTCTACAT 57.088 29.630 0.00 0.00 39.25 2.29
963 965 8.899427 ATGATACCAAGATCAAAGTCTACATG 57.101 34.615 0.00 0.00 39.25 3.21
964 966 6.763135 TGATACCAAGATCAAAGTCTACATGC 59.237 38.462 0.00 0.00 32.84 4.06
965 967 5.171339 ACCAAGATCAAAGTCTACATGCT 57.829 39.130 0.00 0.00 0.00 3.79
966 968 6.299805 ACCAAGATCAAAGTCTACATGCTA 57.700 37.500 0.00 0.00 0.00 3.49
967 969 6.109359 ACCAAGATCAAAGTCTACATGCTAC 58.891 40.000 0.00 0.00 0.00 3.58
968 970 6.108687 CCAAGATCAAAGTCTACATGCTACA 58.891 40.000 0.00 0.00 0.00 2.74
969 971 6.765036 CCAAGATCAAAGTCTACATGCTACAT 59.235 38.462 0.00 0.00 0.00 2.29
970 972 7.281774 CCAAGATCAAAGTCTACATGCTACATT 59.718 37.037 0.00 0.00 0.00 2.71
971 973 8.671921 CAAGATCAAAGTCTACATGCTACATTT 58.328 33.333 0.00 0.00 0.00 2.32
972 974 9.890629 AAGATCAAAGTCTACATGCTACATTTA 57.109 29.630 0.00 0.00 0.00 1.40
973 975 9.890629 AGATCAAAGTCTACATGCTACATTTAA 57.109 29.630 0.00 0.00 0.00 1.52
974 976 9.922305 GATCAAAGTCTACATGCTACATTTAAC 57.078 33.333 0.00 0.00 0.00 2.01
975 977 9.672673 ATCAAAGTCTACATGCTACATTTAACT 57.327 29.630 0.00 0.00 0.00 2.24
980 982 8.634444 AGTCTACATGCTACATTTAACTAGAGG 58.366 37.037 0.00 0.00 0.00 3.69
981 983 7.868415 GTCTACATGCTACATTTAACTAGAGGG 59.132 40.741 0.00 0.00 0.00 4.30
982 984 5.368989 ACATGCTACATTTAACTAGAGGGC 58.631 41.667 0.00 0.00 0.00 5.19
983 985 5.104527 ACATGCTACATTTAACTAGAGGGCA 60.105 40.000 0.00 0.00 0.00 5.36
984 986 5.429681 TGCTACATTTAACTAGAGGGCAA 57.570 39.130 0.00 0.00 0.00 4.52
985 987 6.001449 TGCTACATTTAACTAGAGGGCAAT 57.999 37.500 0.00 0.00 0.00 3.56
986 988 7.131907 TGCTACATTTAACTAGAGGGCAATA 57.868 36.000 0.00 0.00 0.00 1.90
987 989 7.217200 TGCTACATTTAACTAGAGGGCAATAG 58.783 38.462 0.00 0.00 0.00 1.73
988 990 6.147985 GCTACATTTAACTAGAGGGCAATAGC 59.852 42.308 0.00 0.00 41.10 2.97
1074 1076 3.233980 CCGGCCGGATCTGGATCA 61.234 66.667 41.82 0.00 39.54 2.92
1321 1323 2.530958 AATTCATTCGCGGGGGTCGT 62.531 55.000 6.13 0.00 41.72 4.34
1499 1501 3.564027 GGCGCCTCCGATGTTTCG 61.564 66.667 22.15 0.00 45.08 3.46
1577 1579 1.189752 ATCTCAGGTGCGTCACATCT 58.810 50.000 11.20 0.00 41.88 2.90
1675 1677 3.898123 CCCTAATCTTCCTCGATCCTTCA 59.102 47.826 0.00 0.00 0.00 3.02
2000 2004 2.223735 CGCCGGTGTACTCATATCAACT 60.224 50.000 6.91 0.00 0.00 3.16
2156 2160 5.431179 AAAGGAAATCGGCCTAAGAACTA 57.569 39.130 0.00 0.00 33.76 2.24
2167 2171 3.869065 CCTAAGAACTATGCGGGAAACA 58.131 45.455 0.00 0.00 0.00 2.83
2189 2193 1.067084 CGATCATCGCTGCTCCACT 59.933 57.895 0.00 0.00 31.14 4.00
2199 2203 2.360475 GCTCCACTCACCTTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
2749 2761 3.750371 TGGTTTCACGGTCTTCATCAAT 58.250 40.909 0.00 0.00 0.00 2.57
2758 2770 4.634004 ACGGTCTTCATCAATTCGCATAAA 59.366 37.500 0.00 0.00 0.00 1.40
2860 2873 1.303398 AGTTCCTCACGCTCTCCGA 60.303 57.895 0.00 0.00 41.02 4.55
3142 3155 1.301293 GGAAGGGGACAAGGAGCAG 59.699 63.158 0.00 0.00 0.00 4.24
3477 3491 2.189521 GGCGATGGGATCACCGTT 59.810 61.111 0.00 0.00 44.64 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 7.484993 TCATTGTTGGAGGAATCAAAATGAT 57.515 32.000 0.00 0.00 39.09 2.45
189 190 1.830477 GAAATGGCCATAAGCAACCCA 59.170 47.619 21.15 0.00 46.50 4.51
197 198 1.388547 GCCGAGTGAAATGGCCATAA 58.611 50.000 21.15 4.99 43.06 1.90
237 238 1.375396 CACCAAATCCGAGTCGCCA 60.375 57.895 7.12 0.00 0.00 5.69
246 247 8.062065 TCATTACTTGATTAACCACCAAATCC 57.938 34.615 0.00 0.00 32.25 3.01
304 305 1.390803 TCTTACCGCGTTGCAATAACG 59.609 47.619 0.59 3.23 45.56 3.18
360 361 6.241882 TGATTTTTCAGTCGGGGTATATGA 57.758 37.500 0.00 0.00 0.00 2.15
620 621 2.642807 TCATCCTCCGGGAGTTCTTTTT 59.357 45.455 22.07 0.00 45.86 1.94
621 622 2.266279 TCATCCTCCGGGAGTTCTTTT 58.734 47.619 22.07 0.00 45.86 2.27
630 631 0.755686 CCTCTTCTTCATCCTCCGGG 59.244 60.000 0.00 0.00 0.00 5.73
633 634 1.068434 CGAGCCTCTTCTTCATCCTCC 59.932 57.143 0.00 0.00 0.00 4.30
737 739 3.017442 CTGTCTGCTGCTAGTACTGGTA 58.983 50.000 5.39 0.32 0.00 3.25
738 740 1.821753 CTGTCTGCTGCTAGTACTGGT 59.178 52.381 5.39 0.00 0.00 4.00
739 741 1.821753 ACTGTCTGCTGCTAGTACTGG 59.178 52.381 5.39 3.15 0.00 4.00
740 742 3.249091 CAACTGTCTGCTGCTAGTACTG 58.751 50.000 5.39 0.00 0.00 2.74
741 743 2.353208 GCAACTGTCTGCTGCTAGTACT 60.353 50.000 0.00 0.00 39.34 2.73
742 744 1.996191 GCAACTGTCTGCTGCTAGTAC 59.004 52.381 0.00 0.00 39.34 2.73
743 745 1.066858 GGCAACTGTCTGCTGCTAGTA 60.067 52.381 0.00 0.00 42.25 1.82
744 746 0.321122 GGCAACTGTCTGCTGCTAGT 60.321 55.000 0.00 0.00 42.25 2.57
745 747 0.321034 TGGCAACTGTCTGCTGCTAG 60.321 55.000 0.00 0.00 42.25 3.42
746 748 0.108396 TTGGCAACTGTCTGCTGCTA 59.892 50.000 0.00 0.00 42.25 3.49
747 749 0.752743 TTTGGCAACTGTCTGCTGCT 60.753 50.000 0.00 0.00 42.25 4.24
748 750 0.318445 CTTTGGCAACTGTCTGCTGC 60.318 55.000 0.00 0.00 42.25 5.25
749 751 0.313043 CCTTTGGCAACTGTCTGCTG 59.687 55.000 0.00 0.00 42.25 4.41
750 752 0.825010 CCCTTTGGCAACTGTCTGCT 60.825 55.000 0.00 0.00 42.25 4.24
751 753 1.662044 CCCTTTGGCAACTGTCTGC 59.338 57.895 0.00 6.46 41.85 4.26
752 754 0.178992 TCCCCTTTGGCAACTGTCTG 60.179 55.000 0.00 0.00 37.61 3.51
753 755 0.555769 TTCCCCTTTGGCAACTGTCT 59.444 50.000 0.00 0.00 37.61 3.41
754 756 1.632589 ATTCCCCTTTGGCAACTGTC 58.367 50.000 0.00 0.00 37.61 3.51
755 757 2.897326 GTTATTCCCCTTTGGCAACTGT 59.103 45.455 0.00 0.00 37.61 3.55
756 758 3.165071 AGTTATTCCCCTTTGGCAACTG 58.835 45.455 0.00 0.00 32.46 3.16
757 759 3.542969 AGTTATTCCCCTTTGGCAACT 57.457 42.857 0.00 0.00 37.61 3.16
758 760 5.731957 TTTAGTTATTCCCCTTTGGCAAC 57.268 39.130 0.00 0.00 0.00 4.17
759 761 6.327887 AGTTTTTAGTTATTCCCCTTTGGCAA 59.672 34.615 0.00 0.00 0.00 4.52
760 762 5.841783 AGTTTTTAGTTATTCCCCTTTGGCA 59.158 36.000 0.00 0.00 0.00 4.92
761 763 6.210784 AGAGTTTTTAGTTATTCCCCTTTGGC 59.789 38.462 0.00 0.00 0.00 4.52
762 764 7.776618 AGAGTTTTTAGTTATTCCCCTTTGG 57.223 36.000 0.00 0.00 0.00 3.28
763 765 7.598869 GCAAGAGTTTTTAGTTATTCCCCTTTG 59.401 37.037 0.00 0.00 0.00 2.77
764 766 7.256190 GGCAAGAGTTTTTAGTTATTCCCCTTT 60.256 37.037 0.00 0.00 0.00 3.11
765 767 6.210784 GGCAAGAGTTTTTAGTTATTCCCCTT 59.789 38.462 0.00 0.00 0.00 3.95
766 768 5.715279 GGCAAGAGTTTTTAGTTATTCCCCT 59.285 40.000 0.00 0.00 0.00 4.79
767 769 5.105473 GGGCAAGAGTTTTTAGTTATTCCCC 60.105 44.000 0.00 0.00 0.00 4.81
768 770 5.392703 CGGGCAAGAGTTTTTAGTTATTCCC 60.393 44.000 0.00 0.00 0.00 3.97
769 771 5.413523 TCGGGCAAGAGTTTTTAGTTATTCC 59.586 40.000 0.00 0.00 0.00 3.01
770 772 6.490566 TCGGGCAAGAGTTTTTAGTTATTC 57.509 37.500 0.00 0.00 0.00 1.75
771 773 6.884836 AGATCGGGCAAGAGTTTTTAGTTATT 59.115 34.615 0.00 0.00 0.00 1.40
772 774 6.415573 AGATCGGGCAAGAGTTTTTAGTTAT 58.584 36.000 0.00 0.00 0.00 1.89
773 775 5.801380 AGATCGGGCAAGAGTTTTTAGTTA 58.199 37.500 0.00 0.00 0.00 2.24
774 776 4.652822 AGATCGGGCAAGAGTTTTTAGTT 58.347 39.130 0.00 0.00 0.00 2.24
775 777 4.020128 AGAGATCGGGCAAGAGTTTTTAGT 60.020 41.667 0.00 0.00 0.00 2.24
776 778 4.508662 AGAGATCGGGCAAGAGTTTTTAG 58.491 43.478 0.00 0.00 0.00 1.85
777 779 4.553330 AGAGATCGGGCAAGAGTTTTTA 57.447 40.909 0.00 0.00 0.00 1.52
778 780 3.425162 AGAGATCGGGCAAGAGTTTTT 57.575 42.857 0.00 0.00 0.00 1.94
779 781 4.443598 GGATAGAGATCGGGCAAGAGTTTT 60.444 45.833 0.00 0.00 32.28 2.43
780 782 3.070302 GGATAGAGATCGGGCAAGAGTTT 59.930 47.826 0.00 0.00 32.28 2.66
781 783 2.630580 GGATAGAGATCGGGCAAGAGTT 59.369 50.000 0.00 0.00 32.28 3.01
782 784 2.243810 GGATAGAGATCGGGCAAGAGT 58.756 52.381 0.00 0.00 32.28 3.24
783 785 2.029470 GTGGATAGAGATCGGGCAAGAG 60.029 54.545 0.00 0.00 32.28 2.85
784 786 1.964223 GTGGATAGAGATCGGGCAAGA 59.036 52.381 0.00 0.00 32.28 3.02
785 787 1.967066 AGTGGATAGAGATCGGGCAAG 59.033 52.381 0.00 0.00 32.28 4.01
786 788 2.088104 AGTGGATAGAGATCGGGCAA 57.912 50.000 0.00 0.00 32.28 4.52
787 789 2.971901 TAGTGGATAGAGATCGGGCA 57.028 50.000 0.00 0.00 32.28 5.36
788 790 4.098196 GGTAATAGTGGATAGAGATCGGGC 59.902 50.000 0.00 0.00 32.28 6.13
789 791 5.262009 TGGTAATAGTGGATAGAGATCGGG 58.738 45.833 0.00 0.00 32.28 5.14
790 792 5.946972 ACTGGTAATAGTGGATAGAGATCGG 59.053 44.000 0.00 0.00 32.28 4.18
791 793 8.041919 TCTACTGGTAATAGTGGATAGAGATCG 58.958 40.741 0.00 0.00 33.88 3.69
792 794 9.169592 GTCTACTGGTAATAGTGGATAGAGATC 57.830 40.741 0.00 0.00 39.79 2.75
793 795 8.670490 TGTCTACTGGTAATAGTGGATAGAGAT 58.330 37.037 0.00 0.00 39.79 2.75
794 796 7.937942 GTGTCTACTGGTAATAGTGGATAGAGA 59.062 40.741 0.00 0.00 39.79 3.10
795 797 7.940137 AGTGTCTACTGGTAATAGTGGATAGAG 59.060 40.741 0.00 0.00 39.79 2.43
796 798 7.813331 AGTGTCTACTGGTAATAGTGGATAGA 58.187 38.462 0.00 0.00 39.79 1.98
797 799 9.221933 CTAGTGTCTACTGGTAATAGTGGATAG 57.778 40.741 0.00 0.00 39.79 2.08
798 800 8.942033 TCTAGTGTCTACTGGTAATAGTGGATA 58.058 37.037 0.00 0.00 39.79 2.59
799 801 7.720515 GTCTAGTGTCTACTGGTAATAGTGGAT 59.279 40.741 0.00 0.00 39.79 3.41
800 802 7.052873 GTCTAGTGTCTACTGGTAATAGTGGA 58.947 42.308 0.00 0.00 37.78 4.02
801 803 6.827251 TGTCTAGTGTCTACTGGTAATAGTGG 59.173 42.308 0.00 0.00 37.78 4.00
802 804 7.553402 ACTGTCTAGTGTCTACTGGTAATAGTG 59.447 40.741 0.00 0.00 37.78 2.74
803 805 7.631933 ACTGTCTAGTGTCTACTGGTAATAGT 58.368 38.462 0.00 0.00 37.78 2.12
804 806 9.610705 TTACTGTCTAGTGTCTACTGGTAATAG 57.389 37.037 0.00 0.00 37.78 1.73
805 807 9.388506 GTTACTGTCTAGTGTCTACTGGTAATA 57.611 37.037 0.00 0.00 37.78 0.98
806 808 7.886970 TGTTACTGTCTAGTGTCTACTGGTAAT 59.113 37.037 0.00 0.00 37.78 1.89
807 809 7.226441 TGTTACTGTCTAGTGTCTACTGGTAA 58.774 38.462 0.00 0.00 37.78 2.85
808 810 6.772605 TGTTACTGTCTAGTGTCTACTGGTA 58.227 40.000 0.00 0.00 37.78 3.25
809 811 5.628130 TGTTACTGTCTAGTGTCTACTGGT 58.372 41.667 0.00 0.00 37.78 4.00
810 812 6.570672 TTGTTACTGTCTAGTGTCTACTGG 57.429 41.667 0.00 0.00 37.78 4.00
811 813 6.962116 CGATTGTTACTGTCTAGTGTCTACTG 59.038 42.308 0.00 0.00 37.78 2.74
812 814 6.403418 GCGATTGTTACTGTCTAGTGTCTACT 60.403 42.308 0.00 0.00 37.78 2.57
813 815 5.738225 GCGATTGTTACTGTCTAGTGTCTAC 59.262 44.000 0.00 0.00 37.78 2.59
814 816 5.646793 AGCGATTGTTACTGTCTAGTGTCTA 59.353 40.000 0.00 0.00 37.78 2.59
815 817 4.459685 AGCGATTGTTACTGTCTAGTGTCT 59.540 41.667 0.00 0.00 37.78 3.41
816 818 4.734917 AGCGATTGTTACTGTCTAGTGTC 58.265 43.478 0.00 0.00 37.78 3.67
817 819 4.785511 AGCGATTGTTACTGTCTAGTGT 57.214 40.909 0.00 0.00 37.78 3.55
818 820 4.201628 GCAAGCGATTGTTACTGTCTAGTG 60.202 45.833 15.72 0.00 37.78 2.74
819 821 3.927142 GCAAGCGATTGTTACTGTCTAGT 59.073 43.478 15.72 0.00 40.99 2.57
820 822 3.307242 GGCAAGCGATTGTTACTGTCTAG 59.693 47.826 15.72 0.00 0.00 2.43
821 823 3.259064 GGCAAGCGATTGTTACTGTCTA 58.741 45.455 15.72 0.00 0.00 2.59
822 824 2.076863 GGCAAGCGATTGTTACTGTCT 58.923 47.619 15.72 0.00 0.00 3.41
823 825 1.130561 GGGCAAGCGATTGTTACTGTC 59.869 52.381 15.72 0.00 0.00 3.51
824 826 1.165270 GGGCAAGCGATTGTTACTGT 58.835 50.000 15.72 0.00 0.00 3.55
825 827 1.398390 GAGGGCAAGCGATTGTTACTG 59.602 52.381 15.72 0.00 0.00 2.74
826 828 1.279271 AGAGGGCAAGCGATTGTTACT 59.721 47.619 15.72 10.48 0.00 2.24
827 829 1.739067 AGAGGGCAAGCGATTGTTAC 58.261 50.000 15.72 5.85 0.00 2.50
828 830 2.489938 AAGAGGGCAAGCGATTGTTA 57.510 45.000 15.72 0.00 0.00 2.41
829 831 1.620822 AAAGAGGGCAAGCGATTGTT 58.379 45.000 15.72 0.97 0.00 2.83
830 832 1.270550 CAAAAGAGGGCAAGCGATTGT 59.729 47.619 15.72 0.00 0.00 2.71
831 833 1.986698 CAAAAGAGGGCAAGCGATTG 58.013 50.000 9.50 9.50 0.00 2.67
832 834 0.244721 GCAAAAGAGGGCAAGCGATT 59.755 50.000 0.00 0.00 0.00 3.34
833 835 0.895100 TGCAAAAGAGGGCAAGCGAT 60.895 50.000 0.00 0.00 37.03 4.58
834 836 0.895100 ATGCAAAAGAGGGCAAGCGA 60.895 50.000 0.00 0.00 44.20 4.93
835 837 0.037975 AATGCAAAAGAGGGCAAGCG 60.038 50.000 0.00 0.00 44.20 4.68
836 838 1.001181 TGAATGCAAAAGAGGGCAAGC 59.999 47.619 0.00 0.00 44.20 4.01
837 839 3.518590 GATGAATGCAAAAGAGGGCAAG 58.481 45.455 0.00 0.00 44.20 4.01
838 840 2.094597 CGATGAATGCAAAAGAGGGCAA 60.095 45.455 0.00 0.00 44.20 4.52
839 841 1.473677 CGATGAATGCAAAAGAGGGCA 59.526 47.619 0.00 0.00 45.23 5.36
840 842 1.800286 GCGATGAATGCAAAAGAGGGC 60.800 52.381 0.00 0.00 0.00 5.19
841 843 1.202336 GGCGATGAATGCAAAAGAGGG 60.202 52.381 0.00 0.00 0.00 4.30
842 844 1.747355 AGGCGATGAATGCAAAAGAGG 59.253 47.619 0.00 0.00 0.00 3.69
843 845 2.421073 TGAGGCGATGAATGCAAAAGAG 59.579 45.455 0.00 0.00 0.00 2.85
844 846 2.435422 TGAGGCGATGAATGCAAAAGA 58.565 42.857 0.00 0.00 0.00 2.52
845 847 2.925578 TGAGGCGATGAATGCAAAAG 57.074 45.000 0.00 0.00 0.00 2.27
846 848 3.018856 AGATGAGGCGATGAATGCAAAA 58.981 40.909 0.00 0.00 0.00 2.44
847 849 2.646930 AGATGAGGCGATGAATGCAAA 58.353 42.857 0.00 0.00 0.00 3.68
848 850 2.336945 AGATGAGGCGATGAATGCAA 57.663 45.000 0.00 0.00 0.00 4.08
849 851 2.336945 AAGATGAGGCGATGAATGCA 57.663 45.000 0.00 0.00 0.00 3.96
850 852 2.615447 TGAAAGATGAGGCGATGAATGC 59.385 45.455 0.00 0.00 0.00 3.56
851 853 4.514066 TGATGAAAGATGAGGCGATGAATG 59.486 41.667 0.00 0.00 0.00 2.67
852 854 4.514441 GTGATGAAAGATGAGGCGATGAAT 59.486 41.667 0.00 0.00 0.00 2.57
853 855 3.873361 GTGATGAAAGATGAGGCGATGAA 59.127 43.478 0.00 0.00 0.00 2.57
854 856 3.133542 AGTGATGAAAGATGAGGCGATGA 59.866 43.478 0.00 0.00 0.00 2.92
855 857 3.464907 AGTGATGAAAGATGAGGCGATG 58.535 45.455 0.00 0.00 0.00 3.84
856 858 3.834489 AGTGATGAAAGATGAGGCGAT 57.166 42.857 0.00 0.00 0.00 4.58
857 859 4.686972 CTTAGTGATGAAAGATGAGGCGA 58.313 43.478 0.00 0.00 0.00 5.54
858 860 3.247173 GCTTAGTGATGAAAGATGAGGCG 59.753 47.826 0.00 0.00 0.00 5.52
859 861 4.194640 TGCTTAGTGATGAAAGATGAGGC 58.805 43.478 0.00 0.00 0.00 4.70
860 862 6.149973 TGTTTGCTTAGTGATGAAAGATGAGG 59.850 38.462 0.00 0.00 0.00 3.86
861 863 7.137490 TGTTTGCTTAGTGATGAAAGATGAG 57.863 36.000 0.00 0.00 0.00 2.90
862 864 7.229306 AGTTGTTTGCTTAGTGATGAAAGATGA 59.771 33.333 0.00 0.00 0.00 2.92
863 865 7.365741 AGTTGTTTGCTTAGTGATGAAAGATG 58.634 34.615 0.00 0.00 0.00 2.90
864 866 7.516198 AGTTGTTTGCTTAGTGATGAAAGAT 57.484 32.000 0.00 0.00 0.00 2.40
865 867 6.942532 AGTTGTTTGCTTAGTGATGAAAGA 57.057 33.333 0.00 0.00 0.00 2.52
866 868 7.992180 AAAGTTGTTTGCTTAGTGATGAAAG 57.008 32.000 0.00 0.00 0.00 2.62
867 869 8.770438 AAAAAGTTGTTTGCTTAGTGATGAAA 57.230 26.923 0.00 0.00 0.00 2.69
868 870 9.862371 TTAAAAAGTTGTTTGCTTAGTGATGAA 57.138 25.926 0.00 0.00 0.00 2.57
869 871 9.862371 TTTAAAAAGTTGTTTGCTTAGTGATGA 57.138 25.926 0.00 0.00 0.00 2.92
870 872 9.900264 GTTTAAAAAGTTGTTTGCTTAGTGATG 57.100 29.630 0.00 0.00 0.00 3.07
871 873 9.093970 GGTTTAAAAAGTTGTTTGCTTAGTGAT 57.906 29.630 0.00 0.00 0.00 3.06
872 874 8.088981 TGGTTTAAAAAGTTGTTTGCTTAGTGA 58.911 29.630 0.00 0.00 0.00 3.41
873 875 8.245701 TGGTTTAAAAAGTTGTTTGCTTAGTG 57.754 30.769 0.00 0.00 0.00 2.74
874 876 7.547722 CCTGGTTTAAAAAGTTGTTTGCTTAGT 59.452 33.333 0.00 0.00 0.00 2.24
875 877 7.465379 GCCTGGTTTAAAAAGTTGTTTGCTTAG 60.465 37.037 0.00 0.00 0.00 2.18
876 878 6.314152 GCCTGGTTTAAAAAGTTGTTTGCTTA 59.686 34.615 0.00 0.00 0.00 3.09
877 879 5.123186 GCCTGGTTTAAAAAGTTGTTTGCTT 59.877 36.000 0.00 0.00 0.00 3.91
878 880 4.634004 GCCTGGTTTAAAAAGTTGTTTGCT 59.366 37.500 0.00 0.00 0.00 3.91
879 881 4.393371 TGCCTGGTTTAAAAAGTTGTTTGC 59.607 37.500 0.00 0.00 0.00 3.68
880 882 6.314896 TGATGCCTGGTTTAAAAAGTTGTTTG 59.685 34.615 0.00 0.00 0.00 2.93
881 883 6.410540 TGATGCCTGGTTTAAAAAGTTGTTT 58.589 32.000 0.00 0.00 0.00 2.83
882 884 5.983540 TGATGCCTGGTTTAAAAAGTTGTT 58.016 33.333 0.00 0.00 0.00 2.83
883 885 5.606348 TGATGCCTGGTTTAAAAAGTTGT 57.394 34.783 0.00 0.00 0.00 3.32
884 886 6.917217 TTTGATGCCTGGTTTAAAAAGTTG 57.083 33.333 0.00 0.00 0.00 3.16
885 887 7.109501 ACTTTTGATGCCTGGTTTAAAAAGTT 58.890 30.769 18.30 9.29 41.23 2.66
886 888 6.649155 ACTTTTGATGCCTGGTTTAAAAAGT 58.351 32.000 18.30 18.30 39.98 2.66
887 889 7.279758 TGAACTTTTGATGCCTGGTTTAAAAAG 59.720 33.333 17.45 17.45 38.49 2.27
888 890 7.106239 TGAACTTTTGATGCCTGGTTTAAAAA 58.894 30.769 0.00 0.00 0.00 1.94
889 891 6.644347 TGAACTTTTGATGCCTGGTTTAAAA 58.356 32.000 0.00 0.00 0.00 1.52
890 892 6.227298 TGAACTTTTGATGCCTGGTTTAAA 57.773 33.333 0.00 0.00 0.00 1.52
891 893 5.860941 TGAACTTTTGATGCCTGGTTTAA 57.139 34.783 0.00 0.00 0.00 1.52
892 894 5.860941 TTGAACTTTTGATGCCTGGTTTA 57.139 34.783 0.00 0.00 0.00 2.01
893 895 4.751767 TTGAACTTTTGATGCCTGGTTT 57.248 36.364 0.00 0.00 0.00 3.27
894 896 4.751767 TTTGAACTTTTGATGCCTGGTT 57.248 36.364 0.00 0.00 0.00 3.67
895 897 4.081198 TGTTTTGAACTTTTGATGCCTGGT 60.081 37.500 0.00 0.00 0.00 4.00
896 898 4.270808 GTGTTTTGAACTTTTGATGCCTGG 59.729 41.667 0.00 0.00 0.00 4.45
897 899 4.869297 TGTGTTTTGAACTTTTGATGCCTG 59.131 37.500 0.00 0.00 0.00 4.85
898 900 5.083533 TGTGTTTTGAACTTTTGATGCCT 57.916 34.783 0.00 0.00 0.00 4.75
899 901 5.523188 TGATGTGTTTTGAACTTTTGATGCC 59.477 36.000 0.00 0.00 0.00 4.40
900 902 6.476380 TCTGATGTGTTTTGAACTTTTGATGC 59.524 34.615 0.00 0.00 0.00 3.91
901 903 7.990541 TCTGATGTGTTTTGAACTTTTGATG 57.009 32.000 0.00 0.00 0.00 3.07
902 904 8.034215 TGTTCTGATGTGTTTTGAACTTTTGAT 58.966 29.630 0.00 0.00 38.17 2.57
903 905 7.374272 TGTTCTGATGTGTTTTGAACTTTTGA 58.626 30.769 0.00 0.00 38.17 2.69
904 906 7.579589 TGTTCTGATGTGTTTTGAACTTTTG 57.420 32.000 0.00 0.00 38.17 2.44
905 907 8.776376 AATGTTCTGATGTGTTTTGAACTTTT 57.224 26.923 0.00 0.00 38.17 2.27
906 908 9.868277 TTAATGTTCTGATGTGTTTTGAACTTT 57.132 25.926 0.00 0.00 38.17 2.66
908 910 9.467258 CATTAATGTTCTGATGTGTTTTGAACT 57.533 29.630 7.32 0.00 38.17 3.01
909 911 8.216453 GCATTAATGTTCTGATGTGTTTTGAAC 58.784 33.333 16.61 0.00 37.92 3.18
910 912 7.924947 TGCATTAATGTTCTGATGTGTTTTGAA 59.075 29.630 16.61 0.00 0.00 2.69
911 913 7.432059 TGCATTAATGTTCTGATGTGTTTTGA 58.568 30.769 16.61 0.00 0.00 2.69
912 914 7.640616 TGCATTAATGTTCTGATGTGTTTTG 57.359 32.000 16.61 0.00 0.00 2.44
913 915 8.659925 TTTGCATTAATGTTCTGATGTGTTTT 57.340 26.923 16.61 0.00 0.00 2.43
914 916 8.714179 CATTTGCATTAATGTTCTGATGTGTTT 58.286 29.630 16.61 0.00 32.17 2.83
915 917 8.089597 TCATTTGCATTAATGTTCTGATGTGTT 58.910 29.630 16.61 0.00 36.95 3.32
916 918 7.604549 TCATTTGCATTAATGTTCTGATGTGT 58.395 30.769 16.61 0.00 36.95 3.72
917 919 8.642908 ATCATTTGCATTAATGTTCTGATGTG 57.357 30.769 16.61 6.06 36.95 3.21
918 920 9.740239 GTATCATTTGCATTAATGTTCTGATGT 57.260 29.630 21.80 10.23 36.95 3.06
919 921 9.188588 GGTATCATTTGCATTAATGTTCTGATG 57.811 33.333 21.80 16.45 36.95 3.07
920 922 8.916062 TGGTATCATTTGCATTAATGTTCTGAT 58.084 29.630 16.61 18.34 36.95 2.90
921 923 8.291191 TGGTATCATTTGCATTAATGTTCTGA 57.709 30.769 16.61 13.70 36.95 3.27
922 924 8.929827 TTGGTATCATTTGCATTAATGTTCTG 57.070 30.769 16.61 9.45 36.95 3.02
923 925 8.970020 TCTTGGTATCATTTGCATTAATGTTCT 58.030 29.630 16.61 0.00 36.95 3.01
924 926 9.754382 ATCTTGGTATCATTTGCATTAATGTTC 57.246 29.630 16.61 1.98 36.95 3.18
925 927 9.754382 GATCTTGGTATCATTTGCATTAATGTT 57.246 29.630 16.61 5.70 36.95 2.71
926 928 8.916062 TGATCTTGGTATCATTTGCATTAATGT 58.084 29.630 16.61 0.00 36.95 2.71
927 929 9.752961 TTGATCTTGGTATCATTTGCATTAATG 57.247 29.630 11.27 11.27 35.84 1.90
929 931 9.806203 CTTTGATCTTGGTATCATTTGCATTAA 57.194 29.630 0.00 0.00 35.84 1.40
930 932 8.970020 ACTTTGATCTTGGTATCATTTGCATTA 58.030 29.630 0.00 0.00 35.84 1.90
931 933 7.844009 ACTTTGATCTTGGTATCATTTGCATT 58.156 30.769 0.00 0.00 35.84 3.56
932 934 7.341256 AGACTTTGATCTTGGTATCATTTGCAT 59.659 33.333 0.00 0.00 35.84 3.96
933 935 6.660521 AGACTTTGATCTTGGTATCATTTGCA 59.339 34.615 0.00 0.00 35.84 4.08
934 936 7.093322 AGACTTTGATCTTGGTATCATTTGC 57.907 36.000 0.00 0.00 35.84 3.68
935 937 9.166173 TGTAGACTTTGATCTTGGTATCATTTG 57.834 33.333 0.00 0.00 35.84 2.32
936 938 9.911788 ATGTAGACTTTGATCTTGGTATCATTT 57.088 29.630 0.00 0.00 35.84 2.32
937 939 9.334947 CATGTAGACTTTGATCTTGGTATCATT 57.665 33.333 0.00 0.00 35.84 2.57
938 940 7.443575 GCATGTAGACTTTGATCTTGGTATCAT 59.556 37.037 0.00 0.00 35.84 2.45
939 941 6.763135 GCATGTAGACTTTGATCTTGGTATCA 59.237 38.462 0.00 0.00 34.07 2.15
940 942 6.989169 AGCATGTAGACTTTGATCTTGGTATC 59.011 38.462 0.00 0.00 0.00 2.24
941 943 6.893583 AGCATGTAGACTTTGATCTTGGTAT 58.106 36.000 0.00 0.00 0.00 2.73
942 944 6.299805 AGCATGTAGACTTTGATCTTGGTA 57.700 37.500 0.00 0.00 0.00 3.25
943 945 5.171339 AGCATGTAGACTTTGATCTTGGT 57.829 39.130 0.00 0.00 0.00 3.67
944 946 6.108687 TGTAGCATGTAGACTTTGATCTTGG 58.891 40.000 0.00 0.00 0.00 3.61
945 947 7.783090 ATGTAGCATGTAGACTTTGATCTTG 57.217 36.000 0.00 0.00 0.00 3.02
946 948 8.798859 AAATGTAGCATGTAGACTTTGATCTT 57.201 30.769 0.00 0.00 0.00 2.40
947 949 9.890629 TTAAATGTAGCATGTAGACTTTGATCT 57.109 29.630 0.00 0.00 0.00 2.75
948 950 9.922305 GTTAAATGTAGCATGTAGACTTTGATC 57.078 33.333 0.00 0.00 0.00 2.92
949 951 9.672673 AGTTAAATGTAGCATGTAGACTTTGAT 57.327 29.630 0.00 0.00 0.00 2.57
954 956 8.634444 CCTCTAGTTAAATGTAGCATGTAGACT 58.366 37.037 0.00 0.00 0.00 3.24
955 957 7.868415 CCCTCTAGTTAAATGTAGCATGTAGAC 59.132 40.741 0.00 0.00 0.00 2.59
956 958 7.471539 GCCCTCTAGTTAAATGTAGCATGTAGA 60.472 40.741 0.00 0.00 0.00 2.59
957 959 6.647067 GCCCTCTAGTTAAATGTAGCATGTAG 59.353 42.308 0.00 0.00 0.00 2.74
958 960 6.099125 TGCCCTCTAGTTAAATGTAGCATGTA 59.901 38.462 0.00 0.00 0.00 2.29
959 961 5.104527 TGCCCTCTAGTTAAATGTAGCATGT 60.105 40.000 0.00 0.00 0.00 3.21
960 962 5.368145 TGCCCTCTAGTTAAATGTAGCATG 58.632 41.667 0.00 0.00 0.00 4.06
961 963 5.630415 TGCCCTCTAGTTAAATGTAGCAT 57.370 39.130 0.00 0.00 0.00 3.79
962 964 5.429681 TTGCCCTCTAGTTAAATGTAGCA 57.570 39.130 0.00 0.00 0.00 3.49
963 965 6.147985 GCTATTGCCCTCTAGTTAAATGTAGC 59.852 42.308 0.00 0.00 0.00 3.58
964 966 7.217200 TGCTATTGCCCTCTAGTTAAATGTAG 58.783 38.462 0.00 0.00 38.71 2.74
965 967 7.131907 TGCTATTGCCCTCTAGTTAAATGTA 57.868 36.000 0.00 0.00 38.71 2.29
966 968 6.001449 TGCTATTGCCCTCTAGTTAAATGT 57.999 37.500 0.00 0.00 38.71 2.71
967 969 5.049129 GCTGCTATTGCCCTCTAGTTAAATG 60.049 44.000 0.00 0.00 38.71 2.32
968 970 5.066593 GCTGCTATTGCCCTCTAGTTAAAT 58.933 41.667 0.00 0.00 38.71 1.40
969 971 4.164221 AGCTGCTATTGCCCTCTAGTTAAA 59.836 41.667 0.00 0.00 38.71 1.52
970 972 3.711704 AGCTGCTATTGCCCTCTAGTTAA 59.288 43.478 0.00 0.00 38.71 2.01
971 973 3.309296 AGCTGCTATTGCCCTCTAGTTA 58.691 45.455 0.00 0.00 38.71 2.24
972 974 2.103941 GAGCTGCTATTGCCCTCTAGTT 59.896 50.000 0.15 0.00 38.71 2.24
973 975 1.691434 GAGCTGCTATTGCCCTCTAGT 59.309 52.381 0.15 0.00 38.71 2.57
974 976 1.001860 GGAGCTGCTATTGCCCTCTAG 59.998 57.143 0.15 0.00 37.01 2.43
975 977 1.051812 GGAGCTGCTATTGCCCTCTA 58.948 55.000 0.15 0.00 37.01 2.43
976 978 1.835693 GGAGCTGCTATTGCCCTCT 59.164 57.895 0.15 2.02 37.01 3.69
977 979 1.596477 CGGAGCTGCTATTGCCCTC 60.596 63.158 0.15 7.90 38.71 4.30
978 980 2.507944 CGGAGCTGCTATTGCCCT 59.492 61.111 0.15 0.00 38.71 5.19
1074 1076 1.156736 CACGGAGGCAAGAAAATCGT 58.843 50.000 0.00 0.00 0.00 3.73
1096 1098 1.187087 GAGTCCTCACCTCCGTCATT 58.813 55.000 0.00 0.00 0.00 2.57
1182 1184 0.818040 GATACCCAATGTCGGCCCAC 60.818 60.000 0.00 0.00 0.00 4.61
2000 2004 2.045340 GCAAGAAAGGGCCGGCTA 60.045 61.111 28.56 0.00 0.00 3.93
2167 2171 3.157217 GAGCAGCGATGATCGGGGT 62.157 63.158 17.27 0.00 40.84 4.95
2199 2203 1.867233 GCACCTTGTACGCCATGATAG 59.133 52.381 0.00 0.00 0.00 2.08
2378 2382 8.109705 ACAATATTGCTGTGTTTCACAATCTA 57.890 30.769 15.48 0.00 44.08 1.98
2749 2761 4.385825 ACTCCAAAGTGACTTTATGCGAA 58.614 39.130 10.63 0.00 33.32 4.70
2758 2770 2.173569 AGCCTTGAACTCCAAAGTGACT 59.826 45.455 0.00 0.00 35.36 3.41
2860 2873 1.272147 GCCCAGAGACCCAAGAAATGT 60.272 52.381 0.00 0.00 0.00 2.71
3142 3155 2.159170 CCTTGAAGTGTCCTCTCGATCC 60.159 54.545 0.00 0.00 0.00 3.36
3306 3319 3.647771 GGTCCCCCGACAAAGGCT 61.648 66.667 0.00 0.00 41.13 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.