Multiple sequence alignment - TraesCS1B01G150000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G150000 chr1B 100.000 9248 0 0 1 9248 228178721 228169474 0.000000e+00 17078.0
1 TraesCS1B01G150000 chr1B 75.389 321 60 14 8788 9095 10924472 10924158 4.500000e-28 137.0
2 TraesCS1B01G150000 chr1B 100.000 29 0 0 6822 6850 228171844 228171816 5.000000e-03 54.7
3 TraesCS1B01G150000 chr1B 100.000 29 0 0 6878 6906 228171900 228171872 5.000000e-03 54.7
4 TraesCS1B01G150000 chr1A 95.306 5859 143 36 2670 8490 186994586 186988822 0.000000e+00 9175.0
5 TraesCS1B01G150000 chr1A 96.916 1589 33 6 275 1863 186996707 186995135 0.000000e+00 2649.0
6 TraesCS1B01G150000 chr1A 95.329 471 22 0 2203 2673 186995143 186994673 0.000000e+00 749.0
7 TraesCS1B01G150000 chr1A 83.355 757 94 22 8482 9215 186988790 186988043 0.000000e+00 671.0
8 TraesCS1B01G150000 chr1A 100.000 29 0 0 6822 6850 186990421 186990393 5.000000e-03 54.7
9 TraesCS1B01G150000 chr1D 95.592 3494 91 20 5009 8490 127929804 127926362 0.000000e+00 5541.0
10 TraesCS1B01G150000 chr1D 95.835 2761 72 14 2205 4949 127933110 127930377 0.000000e+00 4421.0
11 TraesCS1B01G150000 chr1D 97.316 1155 21 1 358 1512 127934563 127933419 0.000000e+00 1953.0
12 TraesCS1B01G150000 chr1D 98.107 317 5 1 1547 1863 127933419 127933104 1.360000e-152 551.0
13 TraesCS1B01G150000 chr1D 85.570 298 25 8 8953 9248 127925769 127925488 7.020000e-76 296.0
14 TraesCS1B01G150000 chr1D 82.906 351 37 17 1857 2202 206966259 206966591 2.530000e-75 294.0
15 TraesCS1B01G150000 chr1D 83.912 317 27 19 1891 2202 206971481 206971778 1.970000e-71 281.0
16 TraesCS1B01G150000 chr1D 86.207 203 21 6 2003 2202 220593821 220593623 7.270000e-51 213.0
17 TraesCS1B01G150000 chr1D 96.364 110 4 0 257 366 127941194 127941085 2.050000e-41 182.0
18 TraesCS1B01G150000 chr1D 91.453 117 4 3 8484 8599 127926315 127926204 1.240000e-33 156.0
19 TraesCS1B01G150000 chr1D 100.000 29 0 0 6822 6850 127927981 127927953 5.000000e-03 54.7
20 TraesCS1B01G150000 chr4B 90.230 348 16 13 1858 2202 376160396 376160064 1.100000e-118 438.0
21 TraesCS1B01G150000 chr4B 89.884 346 18 12 1859 2202 432263708 432263378 6.640000e-116 429.0
22 TraesCS1B01G150000 chr4B 94.981 259 10 1 1 256 163312909 163313167 4.020000e-108 403.0
23 TraesCS1B01G150000 chr5B 94.981 259 10 1 1 256 363671747 363671489 4.020000e-108 403.0
24 TraesCS1B01G150000 chr6B 86.416 346 30 14 1859 2202 195799430 195799760 6.830000e-96 363.0
25 TraesCS1B01G150000 chr6B 89.691 194 11 2 2019 2203 195804715 195804908 1.200000e-58 239.0
26 TraesCS1B01G150000 chr6B 74.865 370 67 18 8788 9143 466767799 466767442 2.690000e-30 145.0
27 TraesCS1B01G150000 chr6D 92.213 244 14 3 17 256 277330673 277330915 3.200000e-89 340.0
28 TraesCS1B01G150000 chr6D 91.803 244 14 3 17 256 277331474 277331715 1.490000e-87 335.0
29 TraesCS1B01G150000 chr6D 91.393 244 15 3 17 256 277332229 277332470 6.920000e-86 329.0
30 TraesCS1B01G150000 chr6D 90.164 244 17 5 17 256 277329970 277330210 2.510000e-80 311.0
31 TraesCS1B01G150000 chr6D 82.500 120 14 5 143 257 7433166 7433283 2.130000e-16 99.0
32 TraesCS1B01G150000 chr6D 97.959 49 1 0 17 65 277331415 277331463 1.650000e-12 86.1
33 TraesCS1B01G150000 chr6D 96.154 52 1 1 17 68 277329912 277329962 5.950000e-12 84.2
34 TraesCS1B01G150000 chr6D 95.918 49 2 0 17 65 277330614 277330662 7.700000e-11 80.5
35 TraesCS1B01G150000 chr4D 84.000 350 34 18 1858 2203 242950550 242950881 5.390000e-82 316.0
36 TraesCS1B01G150000 chr4D 82.571 350 38 16 1858 2202 158895414 158895083 4.230000e-73 287.0
37 TraesCS1B01G150000 chr6A 83.046 348 40 16 1858 2202 102163633 102163302 1.950000e-76 298.0
38 TraesCS1B01G150000 chr3D 82.857 350 37 15 1858 2202 367404219 367403888 9.080000e-75 292.0
39 TraesCS1B01G150000 chr7D 85.577 104 15 0 9137 9240 625425585 625425688 9.820000e-20 110.0
40 TraesCS1B01G150000 chr7D 94.737 38 1 1 8549 8585 60328355 60328318 3.610000e-04 58.4
41 TraesCS1B01G150000 chr5A 75.000 308 40 25 1858 2151 245957663 245957379 3.530000e-19 108.0
42 TraesCS1B01G150000 chr5A 75.472 265 39 21 1850 2107 245959811 245959566 1.270000e-18 106.0
43 TraesCS1B01G150000 chr7B 95.312 64 2 1 1859 1922 743702655 743702717 5.910000e-17 100.0
44 TraesCS1B01G150000 chr7B 95.312 64 2 1 1859 1922 744105058 744105120 5.910000e-17 100.0
45 TraesCS1B01G150000 chr7B 82.143 112 16 4 9137 9246 281396604 281396495 9.890000e-15 93.5
46 TraesCS1B01G150000 chrUn 80.000 135 23 3 129 259 73934258 73934392 7.640000e-16 97.1
47 TraesCS1B01G150000 chr3B 82.927 82 12 2 4848 4929 414785701 414785780 1.290000e-08 73.1
48 TraesCS1B01G150000 chr2B 94.737 38 1 1 8549 8586 91492984 91493020 3.610000e-04 58.4
49 TraesCS1B01G150000 chr2A 94.595 37 1 1 8550 8586 59374152 59374117 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G150000 chr1B 228169474 228178721 9247 True 17078.000000 17078 100.000000 1 9248 1 chr1B.!!$R2 9247
1 TraesCS1B01G150000 chr1A 186988043 186994586 6543 True 4923.000000 9175 89.330500 2670 9215 2 chr1A.!!$R2 6545
2 TraesCS1B01G150000 chr1A 186994673 186996707 2034 True 1699.000000 2649 96.122500 275 2673 2 chr1A.!!$R3 2398
3 TraesCS1B01G150000 chr1D 127925488 127934563 9075 True 1853.242857 5541 94.839000 358 9248 7 chr1D.!!$R3 8890
4 TraesCS1B01G150000 chr6D 277329912 277332470 2558 False 223.685714 340 93.657714 17 256 7 chr6D.!!$F2 239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 1180 0.242555 TACAGCGATCGTGTGCTTCA 59.757 50.0 24.18 8.90 40.03 3.02 F
2160 3124 0.035725 AGCCCCTAACTAAACGTGCC 60.036 55.0 0.00 0.00 0.00 5.01 F
2402 3366 0.179234 TTTTCGGTGGTGCTCACTCA 59.821 50.0 9.83 0.00 45.38 3.41 F
3908 4882 0.314302 GTGTCAGTACAGACGGCAGT 59.686 55.0 13.04 0.00 41.41 4.40 F
4067 5041 0.458543 CCGAGTCCATGGTGTCTTCG 60.459 60.0 12.58 13.84 0.00 3.79 F
5514 7063 0.173255 GATGGTGCCCAATTTGGTCG 59.827 55.0 14.26 1.26 36.95 4.79 F
6622 8178 0.609151 TCCGCCGAACCTAATTGACA 59.391 50.0 0.00 0.00 0.00 3.58 F
7747 9367 5.355071 GTCAATGTCATTACATCTTCCAGCA 59.645 40.0 0.00 0.00 45.79 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 3165 0.034337 ACGCTGTGAATACCAACCGT 59.966 50.000 0.00 0.00 0.00 4.83 R
4099 5073 0.394565 AGACCACACAGCTTGTCCTC 59.605 55.000 0.00 0.00 35.67 3.71 R
4170 5144 3.032017 AGTGCAGTAGTGTCATGTCAC 57.968 47.619 14.28 14.28 38.46 3.67 R
5387 6936 0.037590 TGTTCCTTGCAATACCGCCT 59.962 50.000 0.00 0.00 0.00 5.52 R
5598 7147 0.250858 CTCAACCAGACACATGCCCA 60.251 55.000 0.00 0.00 0.00 5.36 R
6853 8411 0.041312 CGTGTAAACAGCTGTGGCAC 60.041 55.000 22.49 24.72 41.70 5.01 R
8085 9705 0.465460 TGAAGACACGGCCAAAGCTT 60.465 50.000 2.24 0.00 39.73 3.74 R
8786 10658 0.242825 ACCGCTCGTCGAAATGAAGA 59.757 50.000 0.00 0.00 41.67 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 809 1.255667 GGCGGGACCTACAAGTCAGA 61.256 60.000 0.00 0.00 38.59 3.27
95 841 1.661821 GCCGCGGCTGTACTAGATG 60.662 63.158 41.71 4.08 38.26 2.90
96 842 1.734137 CCGCGGCTGTACTAGATGT 59.266 57.895 14.67 0.00 0.00 3.06
134 881 7.385205 GTCAACAGATCAAATACGGTGCTATAT 59.615 37.037 0.00 0.00 0.00 0.86
165 912 4.041740 GTGACCGTATAATCACTGCAGA 57.958 45.455 23.35 0.00 41.69 4.26
173 1133 6.304922 CCGTATAATCACTGCAGAACGTATAC 59.695 42.308 23.35 21.25 0.00 1.47
176 1136 9.193133 GTATAATCACTGCAGAACGTATACAAT 57.807 33.333 23.35 3.16 0.00 2.71
197 1157 4.700268 TGACCGTAACAAGCGTATTCTA 57.300 40.909 0.00 0.00 0.00 2.10
205 1165 7.253552 CCGTAACAAGCGTATTCTAAAGTACAG 60.254 40.741 0.00 0.00 0.00 2.74
206 1166 6.404712 AACAAGCGTATTCTAAAGTACAGC 57.595 37.500 0.00 0.00 0.00 4.40
211 1171 4.086804 GCGTATTCTAAAGTACAGCGATCG 59.913 45.833 11.69 11.69 0.00 3.69
213 1173 5.113678 CGTATTCTAAAGTACAGCGATCGTG 59.886 44.000 17.81 15.38 0.00 4.35
214 1174 4.430137 TTCTAAAGTACAGCGATCGTGT 57.570 40.909 17.81 19.90 0.00 4.49
215 1175 3.754955 TCTAAAGTACAGCGATCGTGTG 58.245 45.455 24.18 20.19 0.00 3.82
216 1176 1.068474 AAAGTACAGCGATCGTGTGC 58.932 50.000 24.18 22.91 0.00 4.57
218 1178 0.243907 AGTACAGCGATCGTGTGCTT 59.756 50.000 24.25 14.69 37.57 3.91
219 1179 0.640768 GTACAGCGATCGTGTGCTTC 59.359 55.000 24.18 13.13 40.03 3.86
220 1180 0.242555 TACAGCGATCGTGTGCTTCA 59.757 50.000 24.18 8.90 40.03 3.02
228 1191 2.595124 TCGTGTGCTTCAGACTCAAA 57.405 45.000 0.00 0.00 0.00 2.69
231 1194 3.248363 TCGTGTGCTTCAGACTCAAATTG 59.752 43.478 0.00 0.00 0.00 2.32
255 1218 8.893219 TGAGTGACCATGAATGTATTTATCTC 57.107 34.615 0.00 0.00 0.00 2.75
256 1219 8.485392 TGAGTGACCATGAATGTATTTATCTCA 58.515 33.333 0.00 0.00 0.00 3.27
258 1221 9.857656 AGTGACCATGAATGTATTTATCTCATT 57.142 29.630 0.00 0.00 35.00 2.57
373 1336 1.890979 CATCGCACATCTCCCTGCC 60.891 63.158 0.00 0.00 0.00 4.85
430 1394 3.263259 AAGCTGCCAGCCTTCCCT 61.263 61.111 14.25 0.00 43.77 4.20
431 1395 1.925455 AAGCTGCCAGCCTTCCCTA 60.925 57.895 14.25 0.00 43.77 3.53
432 1396 1.919600 AAGCTGCCAGCCTTCCCTAG 61.920 60.000 14.25 0.00 43.77 3.02
433 1397 2.370445 GCTGCCAGCCTTCCCTAGA 61.370 63.158 5.06 0.00 34.48 2.43
434 1398 1.828768 CTGCCAGCCTTCCCTAGAG 59.171 63.158 0.00 0.00 0.00 2.43
435 1399 0.980231 CTGCCAGCCTTCCCTAGAGT 60.980 60.000 0.00 0.00 0.00 3.24
436 1400 0.547712 TGCCAGCCTTCCCTAGAGTT 60.548 55.000 0.00 0.00 0.00 3.01
437 1401 0.621082 GCCAGCCTTCCCTAGAGTTT 59.379 55.000 0.00 0.00 0.00 2.66
438 1402 1.407575 GCCAGCCTTCCCTAGAGTTTC 60.408 57.143 0.00 0.00 0.00 2.78
439 1403 1.210722 CCAGCCTTCCCTAGAGTTTCC 59.789 57.143 0.00 0.00 0.00 3.13
453 1417 7.953493 CCCTAGAGTTTCCTATATCCTCTCTTT 59.047 40.741 0.00 0.00 34.51 2.52
559 1523 1.810151 CGATTGAACACCCCAATTCGT 59.190 47.619 0.00 0.00 34.67 3.85
576 1540 2.285368 TGCCCCTCCATTCGGTCT 60.285 61.111 0.00 0.00 0.00 3.85
645 1609 1.264749 ACTTATGCTCCACGCCCTGA 61.265 55.000 0.00 0.00 38.05 3.86
666 1630 4.226761 GACATTGGTTTCTTGCGTAAAGG 58.773 43.478 0.98 0.00 36.46 3.11
750 1714 1.299976 GCCTGACCCGAATCTTGGT 59.700 57.895 0.00 0.00 37.64 3.67
793 1757 5.899547 ACTGGGGAAAGTTTTTCTTCAATCT 59.100 36.000 2.03 0.00 35.02 2.40
831 1795 2.679450 TCTAACCGTGTCAAATGTCGG 58.321 47.619 0.00 0.00 46.98 4.79
897 1861 8.525316 TCATGAATAATTTGTTGCAAGACTGAT 58.475 29.630 0.00 0.00 0.00 2.90
989 1953 5.095145 TGAGCTTGCTGAATATCTGAAGT 57.905 39.130 0.00 0.00 0.00 3.01
1228 2192 2.564721 GCAACAGGGTTGGGAGCAC 61.565 63.158 10.73 0.00 0.00 4.40
1488 2452 8.223769 CGACTGATTTATTGCCAGATATACAAC 58.776 37.037 0.00 0.00 0.00 3.32
1512 2476 8.928270 ACCACAACTATTATAGTCGAAAGAAG 57.072 34.615 5.26 0.00 45.01 2.85
1528 2492 7.494952 GTCGAAAGAAGTATTTAAGGCACCTAT 59.505 37.037 0.00 0.00 45.01 2.57
1629 2593 2.710096 TGGTTTAGCAGTATGAGCCC 57.290 50.000 0.00 0.00 39.69 5.19
1853 2817 1.086067 TGTGCGAGCTGCTTAGATGC 61.086 55.000 2.53 4.32 46.63 3.91
1854 2818 1.879884 TGCGAGCTGCTTAGATGCG 60.880 57.895 2.53 2.38 46.63 4.73
1855 2819 2.593134 GCGAGCTGCTTAGATGCGG 61.593 63.158 2.53 0.00 41.73 5.69
1856 2820 1.227089 CGAGCTGCTTAGATGCGGT 60.227 57.895 2.53 0.00 41.12 5.68
1857 2821 0.807667 CGAGCTGCTTAGATGCGGTT 60.808 55.000 2.53 0.00 41.12 4.44
1858 2822 1.373570 GAGCTGCTTAGATGCGGTTT 58.626 50.000 2.53 0.00 41.12 3.27
1859 2823 1.063174 GAGCTGCTTAGATGCGGTTTG 59.937 52.381 2.53 0.00 41.12 2.93
1860 2824 0.099436 GCTGCTTAGATGCGGTTTGG 59.901 55.000 0.00 0.00 41.12 3.28
1861 2825 1.453155 CTGCTTAGATGCGGTTTGGT 58.547 50.000 0.00 0.00 34.82 3.67
1862 2826 2.627945 CTGCTTAGATGCGGTTTGGTA 58.372 47.619 0.00 0.00 34.82 3.25
1863 2827 2.609459 CTGCTTAGATGCGGTTTGGTAG 59.391 50.000 0.00 0.00 34.82 3.18
1864 2828 1.940613 GCTTAGATGCGGTTTGGTAGG 59.059 52.381 0.00 0.00 0.00 3.18
1865 2829 2.419574 GCTTAGATGCGGTTTGGTAGGA 60.420 50.000 0.00 0.00 0.00 2.94
1866 2830 3.869065 CTTAGATGCGGTTTGGTAGGAA 58.131 45.455 0.00 0.00 0.00 3.36
1867 2831 2.109425 AGATGCGGTTTGGTAGGAAC 57.891 50.000 0.00 0.00 0.00 3.62
1868 2832 1.628846 AGATGCGGTTTGGTAGGAACT 59.371 47.619 0.00 0.00 46.37 3.01
1869 2833 2.835764 AGATGCGGTTTGGTAGGAACTA 59.164 45.455 0.00 0.00 41.75 2.24
1870 2834 2.754946 TGCGGTTTGGTAGGAACTAG 57.245 50.000 0.00 0.00 44.14 2.57
1871 2835 1.276989 TGCGGTTTGGTAGGAACTAGG 59.723 52.381 0.00 0.00 44.14 3.02
1872 2836 1.406477 GCGGTTTGGTAGGAACTAGGG 60.406 57.143 0.00 0.00 44.14 3.53
1873 2837 1.904537 CGGTTTGGTAGGAACTAGGGT 59.095 52.381 0.00 0.00 44.14 4.34
1874 2838 2.303890 CGGTTTGGTAGGAACTAGGGTT 59.696 50.000 0.00 0.00 44.14 4.11
1875 2839 3.618263 CGGTTTGGTAGGAACTAGGGTTC 60.618 52.174 0.00 0.80 44.14 3.62
1883 2847 1.857965 GAACTAGGGTTCTACCGGGT 58.142 55.000 6.32 4.46 45.90 5.28
1884 2848 1.753649 GAACTAGGGTTCTACCGGGTC 59.246 57.143 6.32 0.00 45.90 4.46
1885 2849 1.006020 ACTAGGGTTCTACCGGGTCT 58.994 55.000 6.32 0.00 39.83 3.85
1886 2850 2.208872 ACTAGGGTTCTACCGGGTCTA 58.791 52.381 6.32 0.00 39.83 2.59
1887 2851 2.174424 ACTAGGGTTCTACCGGGTCTAG 59.826 54.545 6.32 9.74 39.83 2.43
1888 2852 0.261109 AGGGTTCTACCGGGTCTAGG 59.739 60.000 6.32 0.00 39.83 3.02
1889 2853 0.758310 GGGTTCTACCGGGTCTAGGG 60.758 65.000 6.32 0.00 39.83 3.53
1890 2854 1.398174 GGTTCTACCGGGTCTAGGGC 61.398 65.000 6.32 0.00 0.00 5.19
1891 2855 1.454479 TTCTACCGGGTCTAGGGCG 60.454 63.158 6.32 0.00 0.00 6.13
1892 2856 2.910994 CTACCGGGTCTAGGGCGG 60.911 72.222 6.32 0.00 0.00 6.13
1893 2857 3.419580 TACCGGGTCTAGGGCGGA 61.420 66.667 6.32 0.00 0.00 5.54
1894 2858 3.426309 TACCGGGTCTAGGGCGGAG 62.426 68.421 6.32 0.00 0.00 4.63
1895 2859 4.835891 CCGGGTCTAGGGCGGAGT 62.836 72.222 0.00 0.00 0.00 3.85
1896 2860 2.758737 CGGGTCTAGGGCGGAGTT 60.759 66.667 0.00 0.00 0.00 3.01
1897 2861 2.356780 CGGGTCTAGGGCGGAGTTT 61.357 63.158 0.00 0.00 0.00 2.66
1898 2862 1.221021 GGGTCTAGGGCGGAGTTTG 59.779 63.158 0.00 0.00 0.00 2.93
1899 2863 1.551019 GGGTCTAGGGCGGAGTTTGT 61.551 60.000 0.00 0.00 0.00 2.83
1900 2864 1.188863 GGTCTAGGGCGGAGTTTGTA 58.811 55.000 0.00 0.00 0.00 2.41
1901 2865 1.136500 GGTCTAGGGCGGAGTTTGTAG 59.864 57.143 0.00 0.00 0.00 2.74
1902 2866 1.136500 GTCTAGGGCGGAGTTTGTAGG 59.864 57.143 0.00 0.00 0.00 3.18
1903 2867 0.464452 CTAGGGCGGAGTTTGTAGGG 59.536 60.000 0.00 0.00 0.00 3.53
1904 2868 0.979187 TAGGGCGGAGTTTGTAGGGG 60.979 60.000 0.00 0.00 0.00 4.79
1905 2869 2.295602 GGGCGGAGTTTGTAGGGGA 61.296 63.158 0.00 0.00 0.00 4.81
1906 2870 1.681076 GGCGGAGTTTGTAGGGGAA 59.319 57.895 0.00 0.00 0.00 3.97
1907 2871 0.392595 GGCGGAGTTTGTAGGGGAAG 60.393 60.000 0.00 0.00 0.00 3.46
1908 2872 0.392595 GCGGAGTTTGTAGGGGAAGG 60.393 60.000 0.00 0.00 0.00 3.46
1909 2873 1.272807 CGGAGTTTGTAGGGGAAGGA 58.727 55.000 0.00 0.00 0.00 3.36
1910 2874 1.207329 CGGAGTTTGTAGGGGAAGGAG 59.793 57.143 0.00 0.00 0.00 3.69
1911 2875 1.560146 GGAGTTTGTAGGGGAAGGAGG 59.440 57.143 0.00 0.00 0.00 4.30
1912 2876 1.560146 GAGTTTGTAGGGGAAGGAGGG 59.440 57.143 0.00 0.00 0.00 4.30
1913 2877 1.153565 AGTTTGTAGGGGAAGGAGGGA 59.846 52.381 0.00 0.00 0.00 4.20
1914 2878 1.560146 GTTTGTAGGGGAAGGAGGGAG 59.440 57.143 0.00 0.00 0.00 4.30
1915 2879 0.044244 TTGTAGGGGAAGGAGGGAGG 59.956 60.000 0.00 0.00 0.00 4.30
1916 2880 1.766864 GTAGGGGAAGGAGGGAGGC 60.767 68.421 0.00 0.00 0.00 4.70
1917 2881 3.390671 TAGGGGAAGGAGGGAGGCG 62.391 68.421 0.00 0.00 0.00 5.52
1919 2883 4.798682 GGGAAGGAGGGAGGCGGA 62.799 72.222 0.00 0.00 0.00 5.54
1920 2884 2.446802 GGAAGGAGGGAGGCGGAT 60.447 66.667 0.00 0.00 0.00 4.18
1921 2885 2.812619 GGAAGGAGGGAGGCGGATG 61.813 68.421 0.00 0.00 0.00 3.51
1922 2886 1.762460 GAAGGAGGGAGGCGGATGA 60.762 63.158 0.00 0.00 0.00 2.92
1923 2887 1.753368 GAAGGAGGGAGGCGGATGAG 61.753 65.000 0.00 0.00 0.00 2.90
1924 2888 3.934962 GGAGGGAGGCGGATGAGC 61.935 72.222 0.00 0.00 0.00 4.26
1925 2889 2.841988 GAGGGAGGCGGATGAGCT 60.842 66.667 0.00 0.00 37.29 4.09
1926 2890 2.841988 AGGGAGGCGGATGAGCTC 60.842 66.667 6.82 6.82 37.29 4.09
1927 2891 2.841988 GGGAGGCGGATGAGCTCT 60.842 66.667 16.19 0.00 37.29 4.09
1928 2892 2.439104 GGGAGGCGGATGAGCTCTT 61.439 63.158 16.19 8.82 37.29 2.85
1929 2893 1.227497 GGAGGCGGATGAGCTCTTG 60.227 63.158 16.19 3.07 37.29 3.02
1930 2894 1.680522 GGAGGCGGATGAGCTCTTGA 61.681 60.000 16.19 0.00 37.29 3.02
1931 2895 0.529555 GAGGCGGATGAGCTCTTGAC 60.530 60.000 16.19 4.04 37.29 3.18
1932 2896 1.522580 GGCGGATGAGCTCTTGACC 60.523 63.158 16.19 11.38 37.29 4.02
1933 2897 1.880340 GCGGATGAGCTCTTGACCG 60.880 63.158 24.91 24.91 42.63 4.79
1934 2898 1.880340 CGGATGAGCTCTTGACCGC 60.880 63.158 16.19 0.00 34.36 5.68
1935 2899 1.880340 GGATGAGCTCTTGACCGCG 60.880 63.158 16.19 0.00 0.00 6.46
1936 2900 2.510238 ATGAGCTCTTGACCGCGC 60.510 61.111 16.19 0.00 0.00 6.86
1938 2902 4.778415 GAGCTCTTGACCGCGCGA 62.778 66.667 34.63 8.94 0.00 5.87
1939 2903 4.785512 AGCTCTTGACCGCGCGAG 62.786 66.667 34.63 23.58 0.00 5.03
1940 2904 4.778415 GCTCTTGACCGCGCGAGA 62.778 66.667 34.63 24.26 0.00 4.04
1941 2905 2.876645 CTCTTGACCGCGCGAGAC 60.877 66.667 34.63 21.14 0.00 3.36
1987 2951 4.838486 GTCTCGCGCGGTGGAGAG 62.838 72.222 31.69 18.82 39.80 3.20
1999 2963 4.899239 GGAGAGGCGGCGGTGATG 62.899 72.222 9.78 0.00 0.00 3.07
2000 2964 4.899239 GAGAGGCGGCGGTGATGG 62.899 72.222 9.78 0.00 0.00 3.51
2006 2970 4.227134 CGGCGGTGATGGGAGGAG 62.227 72.222 0.00 0.00 0.00 3.69
2007 2971 3.866582 GGCGGTGATGGGAGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
2008 2972 4.554036 GCGGTGATGGGAGGAGGC 62.554 72.222 0.00 0.00 0.00 4.70
2009 2973 4.227134 CGGTGATGGGAGGAGGCG 62.227 72.222 0.00 0.00 0.00 5.52
2010 2974 3.866582 GGTGATGGGAGGAGGCGG 61.867 72.222 0.00 0.00 0.00 6.13
2011 2975 4.554036 GTGATGGGAGGAGGCGGC 62.554 72.222 0.00 0.00 0.00 6.53
2027 2991 3.497031 GCGGCGCAGTTAGGGTTC 61.497 66.667 29.21 0.00 0.00 3.62
2028 2992 2.818274 CGGCGCAGTTAGGGTTCC 60.818 66.667 10.83 0.00 0.00 3.62
2029 2993 2.818274 GGCGCAGTTAGGGTTCCG 60.818 66.667 10.83 0.00 0.00 4.30
2030 2994 2.818274 GCGCAGTTAGGGTTCCGG 60.818 66.667 0.30 0.00 0.00 5.14
2031 2995 2.818274 CGCAGTTAGGGTTCCGGC 60.818 66.667 0.00 0.00 0.00 6.13
2032 2996 2.669240 GCAGTTAGGGTTCCGGCT 59.331 61.111 0.00 0.00 0.00 5.52
2033 2997 1.449778 GCAGTTAGGGTTCCGGCTC 60.450 63.158 0.00 0.00 0.00 4.70
2034 2998 1.221021 CAGTTAGGGTTCCGGCTCC 59.779 63.158 0.00 0.53 0.00 4.70
2035 2999 1.080538 AGTTAGGGTTCCGGCTCCT 59.919 57.895 13.24 13.24 34.85 3.69
2036 3000 0.976590 AGTTAGGGTTCCGGCTCCTC 60.977 60.000 12.29 4.77 32.46 3.71
2037 3001 0.976590 GTTAGGGTTCCGGCTCCTCT 60.977 60.000 12.29 10.56 32.46 3.69
2038 3002 0.686769 TTAGGGTTCCGGCTCCTCTC 60.687 60.000 12.29 0.00 32.46 3.20
2039 3003 2.905935 TAGGGTTCCGGCTCCTCTCG 62.906 65.000 12.29 0.00 32.46 4.04
2040 3004 3.839432 GGTTCCGGCTCCTCTCGG 61.839 72.222 0.00 0.00 46.89 4.63
2051 3015 3.854669 CTCTCGGAGCCGGGCAAT 61.855 66.667 23.09 0.00 40.19 3.56
2052 3016 2.443203 TCTCGGAGCCGGGCAATA 60.443 61.111 23.09 2.39 40.19 1.90
2053 3017 2.280186 CTCGGAGCCGGGCAATAC 60.280 66.667 23.09 9.21 40.25 1.89
2054 3018 3.078196 TCGGAGCCGGGCAATACA 61.078 61.111 23.09 0.00 40.25 2.29
2055 3019 2.124901 CGGAGCCGGGCAATACAA 60.125 61.111 23.09 0.00 35.56 2.41
2056 3020 1.525995 CGGAGCCGGGCAATACAAT 60.526 57.895 23.09 0.00 35.56 2.71
2057 3021 1.101049 CGGAGCCGGGCAATACAATT 61.101 55.000 23.09 0.00 35.56 2.32
2058 3022 0.385390 GGAGCCGGGCAATACAATTG 59.615 55.000 23.09 3.24 0.00 2.32
2059 3023 1.102978 GAGCCGGGCAATACAATTGT 58.897 50.000 23.09 16.68 0.00 2.71
2060 3024 1.065551 GAGCCGGGCAATACAATTGTC 59.934 52.381 23.09 0.00 0.00 3.18
2061 3025 1.102978 GCCGGGCAATACAATTGTCT 58.897 50.000 15.85 1.74 0.00 3.41
2062 3026 1.476488 GCCGGGCAATACAATTGTCTT 59.524 47.619 15.85 9.02 0.00 3.01
2063 3027 2.685897 GCCGGGCAATACAATTGTCTTA 59.314 45.455 15.85 0.00 0.00 2.10
2064 3028 3.317993 GCCGGGCAATACAATTGTCTTAT 59.682 43.478 15.85 0.00 0.00 1.73
2065 3029 4.202111 GCCGGGCAATACAATTGTCTTATT 60.202 41.667 15.85 6.81 0.00 1.40
2066 3030 5.280945 CCGGGCAATACAATTGTCTTATTG 58.719 41.667 20.85 20.85 40.53 1.90
2078 3042 9.995003 ACAATTGTCTTATTGCTTAATTTTCCA 57.005 25.926 4.92 0.00 38.74 3.53
2083 3047 9.912634 TGTCTTATTGCTTAATTTTCCAAAGAG 57.087 29.630 0.00 0.00 0.00 2.85
2084 3048 9.358872 GTCTTATTGCTTAATTTTCCAAAGAGG 57.641 33.333 0.00 0.00 39.47 3.69
2085 3049 9.088987 TCTTATTGCTTAATTTTCCAAAGAGGT 57.911 29.630 0.00 0.00 39.02 3.85
2086 3050 9.358872 CTTATTGCTTAATTTTCCAAAGAGGTC 57.641 33.333 0.00 0.00 39.02 3.85
2087 3051 6.976934 TTGCTTAATTTTCCAAAGAGGTCT 57.023 33.333 0.00 0.00 39.02 3.85
2088 3052 6.976934 TGCTTAATTTTCCAAAGAGGTCTT 57.023 33.333 0.00 0.00 39.02 3.01
2089 3053 8.472007 TTGCTTAATTTTCCAAAGAGGTCTTA 57.528 30.769 0.00 0.00 39.02 2.10
2090 3054 7.882179 TGCTTAATTTTCCAAAGAGGTCTTAC 58.118 34.615 0.00 0.00 39.02 2.34
2091 3055 7.504238 TGCTTAATTTTCCAAAGAGGTCTTACA 59.496 33.333 0.00 0.00 39.02 2.41
2092 3056 8.023706 GCTTAATTTTCCAAAGAGGTCTTACAG 58.976 37.037 0.00 0.00 39.02 2.74
2093 3057 5.966742 ATTTTCCAAAGAGGTCTTACAGC 57.033 39.130 0.00 0.00 39.02 4.40
2094 3058 4.706842 TTTCCAAAGAGGTCTTACAGCT 57.293 40.909 0.00 0.00 39.02 4.24
2095 3059 3.685139 TCCAAAGAGGTCTTACAGCTG 57.315 47.619 13.48 13.48 39.02 4.24
2096 3060 2.972713 TCCAAAGAGGTCTTACAGCTGT 59.027 45.455 25.12 25.12 39.02 4.40
2097 3061 3.391296 TCCAAAGAGGTCTTACAGCTGTT 59.609 43.478 27.06 5.20 37.70 3.16
2098 3062 4.137543 CCAAAGAGGTCTTACAGCTGTTT 58.862 43.478 27.06 7.56 44.66 2.83
2099 3063 5.071250 TCCAAAGAGGTCTTACAGCTGTTTA 59.929 40.000 27.06 12.78 42.58 2.01
2100 3064 5.940470 CCAAAGAGGTCTTACAGCTGTTTAT 59.060 40.000 27.06 1.44 42.58 1.40
2101 3065 7.038587 TCCAAAGAGGTCTTACAGCTGTTTATA 60.039 37.037 27.06 3.24 42.58 0.98
2102 3066 7.770897 CCAAAGAGGTCTTACAGCTGTTTATAT 59.229 37.037 27.06 7.28 42.58 0.86
2103 3067 9.817809 CAAAGAGGTCTTACAGCTGTTTATATA 57.182 33.333 27.06 1.88 42.58 0.86
2109 3073 9.130312 GGTCTTACAGCTGTTTATATAATCTCG 57.870 37.037 27.06 0.21 0.00 4.04
2110 3074 9.130312 GTCTTACAGCTGTTTATATAATCTCGG 57.870 37.037 27.06 0.00 0.00 4.63
2111 3075 8.857098 TCTTACAGCTGTTTATATAATCTCGGT 58.143 33.333 27.06 0.00 0.00 4.69
2112 3076 8.812147 TTACAGCTGTTTATATAATCTCGGTG 57.188 34.615 27.06 15.82 0.00 4.94
2113 3077 5.696724 ACAGCTGTTTATATAATCTCGGTGC 59.303 40.000 15.25 8.17 0.00 5.01
2114 3078 5.928839 CAGCTGTTTATATAATCTCGGTGCT 59.071 40.000 5.25 0.00 0.00 4.40
2115 3079 7.090808 CAGCTGTTTATATAATCTCGGTGCTA 58.909 38.462 5.25 0.00 0.00 3.49
2116 3080 7.598869 CAGCTGTTTATATAATCTCGGTGCTAA 59.401 37.037 5.25 0.00 0.00 3.09
2117 3081 8.148351 AGCTGTTTATATAATCTCGGTGCTAAA 58.852 33.333 0.00 0.00 0.00 1.85
2118 3082 8.936864 GCTGTTTATATAATCTCGGTGCTAAAT 58.063 33.333 0.00 0.00 0.00 1.40
2144 3108 6.961360 AAATAAGATAACTTGGGCTAAGCC 57.039 37.500 10.83 0.00 41.50 4.35
2156 3120 2.558378 GGCTAAGCCCCTAACTAAACG 58.442 52.381 0.00 0.00 44.06 3.60
2157 3121 2.093288 GGCTAAGCCCCTAACTAAACGT 60.093 50.000 0.00 0.00 44.06 3.99
2158 3122 2.934553 GCTAAGCCCCTAACTAAACGTG 59.065 50.000 0.00 0.00 0.00 4.49
2159 3123 1.817357 AAGCCCCTAACTAAACGTGC 58.183 50.000 0.00 0.00 0.00 5.34
2160 3124 0.035725 AGCCCCTAACTAAACGTGCC 60.036 55.000 0.00 0.00 0.00 5.01
2161 3125 1.028330 GCCCCTAACTAAACGTGCCC 61.028 60.000 0.00 0.00 0.00 5.36
2162 3126 0.325602 CCCCTAACTAAACGTGCCCA 59.674 55.000 0.00 0.00 0.00 5.36
2163 3127 1.064979 CCCCTAACTAAACGTGCCCAT 60.065 52.381 0.00 0.00 0.00 4.00
2164 3128 2.619590 CCCCTAACTAAACGTGCCCATT 60.620 50.000 0.00 0.00 0.00 3.16
2165 3129 2.422127 CCCTAACTAAACGTGCCCATTG 59.578 50.000 0.00 0.00 0.00 2.82
2166 3130 2.422127 CCTAACTAAACGTGCCCATTGG 59.578 50.000 0.00 0.00 0.00 3.16
2176 3140 4.195334 CCCATTGGGCCTCCTCCG 62.195 72.222 9.28 0.00 35.35 4.63
2177 3141 4.195334 CCATTGGGCCTCCTCCGG 62.195 72.222 4.53 0.00 0.00 5.14
2185 3149 2.748018 GCCTCCTCCGGCTATAAGT 58.252 57.895 0.00 0.00 46.63 2.24
2186 3150 1.049402 GCCTCCTCCGGCTATAAGTT 58.951 55.000 0.00 0.00 46.63 2.66
2187 3151 2.245582 GCCTCCTCCGGCTATAAGTTA 58.754 52.381 0.00 0.00 46.63 2.24
2188 3152 2.029200 GCCTCCTCCGGCTATAAGTTAC 60.029 54.545 0.00 0.00 46.63 2.50
2189 3153 3.228453 CCTCCTCCGGCTATAAGTTACA 58.772 50.000 0.00 0.00 0.00 2.41
2190 3154 3.005578 CCTCCTCCGGCTATAAGTTACAC 59.994 52.174 0.00 0.00 0.00 2.90
2191 3155 2.961062 TCCTCCGGCTATAAGTTACACC 59.039 50.000 0.00 0.00 0.00 4.16
2192 3156 2.288030 CCTCCGGCTATAAGTTACACCG 60.288 54.545 0.00 11.33 40.30 4.94
2194 3158 2.877043 CGGCTATAAGTTACACCGGT 57.123 50.000 0.00 0.00 37.04 5.28
2195 3159 2.735823 CGGCTATAAGTTACACCGGTC 58.264 52.381 2.59 0.00 37.04 4.79
2196 3160 2.099592 CGGCTATAAGTTACACCGGTCA 59.900 50.000 2.59 0.00 37.04 4.02
2197 3161 3.243636 CGGCTATAAGTTACACCGGTCAT 60.244 47.826 2.59 0.00 37.04 3.06
2198 3162 4.022935 CGGCTATAAGTTACACCGGTCATA 60.023 45.833 2.59 0.00 37.04 2.15
2199 3163 5.507817 CGGCTATAAGTTACACCGGTCATAA 60.508 44.000 2.59 3.54 37.04 1.90
2200 3164 5.693555 GGCTATAAGTTACACCGGTCATAAC 59.306 44.000 22.64 22.64 0.00 1.89
2201 3165 6.275335 GCTATAAGTTACACCGGTCATAACA 58.725 40.000 28.01 16.06 32.33 2.41
2310 3274 3.748568 GTCTGATGTTTCTGTTGAGGGAC 59.251 47.826 0.00 0.00 0.00 4.46
2344 3308 1.801309 ATTCCCACGTTTTGGCCACG 61.801 55.000 3.88 9.23 45.37 4.94
2402 3366 0.179234 TTTTCGGTGGTGCTCACTCA 59.821 50.000 9.83 0.00 45.38 3.41
2457 3421 1.452110 TGAACCAGCCGATGAACATG 58.548 50.000 0.00 0.00 0.00 3.21
2488 3452 1.414919 ACCTTGTACAGCTCCGTTTCA 59.585 47.619 0.00 0.00 0.00 2.69
2530 3494 3.064324 GCCGAGTGCATGCCCTTT 61.064 61.111 16.68 0.00 40.77 3.11
2684 3649 7.812690 TCTCTGTAACTACAAGTCTACAACA 57.187 36.000 0.00 0.00 35.50 3.33
2700 3665 6.927381 GTCTACAACATGGTACTGTTAGTGTT 59.073 38.462 0.00 0.00 37.25 3.32
2770 3736 7.049133 TGTTAGTGTATGTTTGGTTGTACTGT 58.951 34.615 0.00 0.00 0.00 3.55
2771 3737 7.553402 TGTTAGTGTATGTTTGGTTGTACTGTT 59.447 33.333 0.00 0.00 0.00 3.16
2772 3738 8.400186 GTTAGTGTATGTTTGGTTGTACTGTTT 58.600 33.333 0.00 0.00 0.00 2.83
2773 3739 6.791303 AGTGTATGTTTGGTTGTACTGTTTG 58.209 36.000 0.00 0.00 0.00 2.93
2774 3740 5.974751 GTGTATGTTTGGTTGTACTGTTTGG 59.025 40.000 0.00 0.00 0.00 3.28
2775 3741 5.652891 TGTATGTTTGGTTGTACTGTTTGGT 59.347 36.000 0.00 0.00 0.00 3.67
2776 3742 5.669164 ATGTTTGGTTGTACTGTTTGGTT 57.331 34.783 0.00 0.00 0.00 3.67
2777 3743 4.810790 TGTTTGGTTGTACTGTTTGGTTG 58.189 39.130 0.00 0.00 0.00 3.77
2778 3744 4.281182 TGTTTGGTTGTACTGTTTGGTTGT 59.719 37.500 0.00 0.00 0.00 3.32
2779 3745 5.475909 TGTTTGGTTGTACTGTTTGGTTGTA 59.524 36.000 0.00 0.00 0.00 2.41
2780 3746 5.564048 TTGGTTGTACTGTTTGGTTGTAC 57.436 39.130 0.00 0.00 37.60 2.90
2781 3747 4.846040 TGGTTGTACTGTTTGGTTGTACT 58.154 39.130 0.00 0.00 37.85 2.73
2782 3748 4.636648 TGGTTGTACTGTTTGGTTGTACTG 59.363 41.667 0.00 0.00 37.85 2.74
2810 3776 1.206849 TGTTGAGTGCTCATATGCGGA 59.793 47.619 2.47 0.00 39.64 5.54
2909 3875 7.174253 ACAAAGAGCCACTTCGTGATTATTTTA 59.826 33.333 0.00 0.00 37.93 1.52
3006 3972 6.092670 TGGTACTCGTTATGTGTCTACACTAC 59.907 42.308 13.95 8.61 46.55 2.73
3074 4040 9.547753 GACTGCTGATAAGATTATTCTGGTTAA 57.452 33.333 0.00 0.00 30.72 2.01
3654 4620 2.169144 ACACGCATCATCCTCATTCAGA 59.831 45.455 0.00 0.00 0.00 3.27
3655 4621 3.181457 ACACGCATCATCCTCATTCAGAT 60.181 43.478 0.00 0.00 0.00 2.90
3756 4723 1.694133 GCTCCCAGGTCCAGATGAGG 61.694 65.000 0.00 0.00 0.00 3.86
3908 4882 0.314302 GTGTCAGTACAGACGGCAGT 59.686 55.000 13.04 0.00 41.41 4.40
4042 5016 1.207791 TCTTCCTCCCCTGAATCTGC 58.792 55.000 0.00 0.00 0.00 4.26
4067 5041 0.458543 CCGAGTCCATGGTGTCTTCG 60.459 60.000 12.58 13.84 0.00 3.79
4099 5073 6.701841 AGCGTTCTAATCATATACACCTTGTG 59.298 38.462 0.00 0.00 39.75 3.33
4170 5144 4.739046 GTTGGACTCATCAACTGACAAG 57.261 45.455 0.00 0.00 40.73 3.16
4197 5171 4.137116 TGACACTACTGCACTTGACTTT 57.863 40.909 0.00 0.00 0.00 2.66
4291 5265 5.163764 TGCAGTTTTGTTCTGTACTTCAGTG 60.164 40.000 0.00 0.00 43.97 3.66
4340 5314 2.708216 TCAGATTGCGGCCTAATTCA 57.292 45.000 0.00 0.00 0.00 2.57
4382 5356 5.845103 TGGTACGTTTCAGAAATCTGTACA 58.155 37.500 23.49 0.00 44.12 2.90
4470 5455 2.093973 CCCTGTCGTTTCTGCAGATACT 60.094 50.000 27.53 0.00 32.39 2.12
4514 5499 5.093457 CGATGAATCATTGCCAATCTATGC 58.907 41.667 0.00 0.00 0.00 3.14
4550 5535 2.036475 CTGTATCCCATCAAGGTCCTCG 59.964 54.545 0.00 0.00 34.66 4.63
4701 5686 3.439895 GGAGAACCGTCCAATCTCTAC 57.560 52.381 0.00 0.00 39.59 2.59
4839 5826 2.648059 GAAACTCCATGGTAGCTGCAT 58.352 47.619 12.58 0.00 0.00 3.96
4843 5830 1.696336 CTCCATGGTAGCTGCATACCT 59.304 52.381 12.58 3.01 44.76 3.08
4923 5910 1.272592 TGGGTAGTGTATGGGTCGTCA 60.273 52.381 0.00 0.00 0.00 4.35
4936 5923 1.217882 GTCGTCAACTTCACCCACTG 58.782 55.000 0.00 0.00 0.00 3.66
4951 5938 2.237893 CCCACTGGTAACCCGATTAGTT 59.762 50.000 0.00 0.00 0.00 2.24
5166 6715 2.257207 AGAAGTACAGCAAGTAGGCCA 58.743 47.619 5.01 0.00 32.19 5.36
5385 6934 2.439156 GGCAAGCCCTGTAGCCTG 60.439 66.667 0.00 0.00 43.70 4.85
5386 6935 2.352805 GCAAGCCCTGTAGCCTGT 59.647 61.111 0.00 0.00 0.00 4.00
5387 6936 1.602237 GCAAGCCCTGTAGCCTGTA 59.398 57.895 0.00 0.00 0.00 2.74
5388 6937 0.462759 GCAAGCCCTGTAGCCTGTAG 60.463 60.000 0.00 0.00 0.00 2.74
5458 7007 5.089970 TGTGGAATGTTGGTCAGAGATAG 57.910 43.478 0.00 0.00 0.00 2.08
5509 7058 1.078347 ACCCGATGGTGCCCAATTT 59.922 52.632 0.00 0.00 45.58 1.82
5514 7063 0.173255 GATGGTGCCCAATTTGGTCG 59.827 55.000 14.26 1.26 36.95 4.79
5727 7277 2.897969 ACACAGTTCTCGACCACCTTAT 59.102 45.455 0.00 0.00 0.00 1.73
5733 7283 2.569059 TCTCGACCACCTTATCCTACG 58.431 52.381 0.00 0.00 0.00 3.51
6012 7562 4.684724 TCCACTCCACCTTATCTTACACT 58.315 43.478 0.00 0.00 0.00 3.55
6033 7583 6.596106 ACACTATATTAATTTCGGCACACACA 59.404 34.615 0.00 0.00 0.00 3.72
6063 7613 0.974383 ACTTGAAGGTCCAGGTACCG 59.026 55.000 6.18 1.26 44.77 4.02
6327 7878 1.980951 ATGCACCATAGCGTTGCACG 61.981 55.000 0.00 4.61 45.88 5.34
6436 7990 2.521126 TCACAGTGGTAGATTCACCGA 58.479 47.619 0.00 0.00 41.88 4.69
6497 8051 7.443879 TGTGCTTTCTTTGTCATGTCATACTTA 59.556 33.333 0.00 0.00 0.00 2.24
6602 8157 6.758416 GTGAAGCTCAAAAAGTTTCTCCAAAT 59.242 34.615 0.00 0.00 43.51 2.32
6606 8161 5.175673 GCTCAAAAAGTTTCTCCAAATTCCG 59.824 40.000 0.00 0.00 0.00 4.30
6609 8164 1.165270 AGTTTCTCCAAATTCCGCCG 58.835 50.000 0.00 0.00 0.00 6.46
6622 8178 0.609151 TCCGCCGAACCTAATTGACA 59.391 50.000 0.00 0.00 0.00 3.58
6711 8269 6.002704 AGCTCATCAAACATCTCAAAGAAGT 58.997 36.000 0.00 0.00 0.00 3.01
7713 9333 6.866480 CATCCTTATGGTTGCTAAACACAAT 58.134 36.000 0.00 0.00 38.10 2.71
7747 9367 5.355071 GTCAATGTCATTACATCTTCCAGCA 59.645 40.000 0.00 0.00 45.79 4.41
8085 9705 2.995077 ATGCGGGGCTTTGATCCCA 61.995 57.895 0.06 0.00 45.73 4.37
8178 9798 1.270907 TTGGTTTTGCTTGGGTGTGT 58.729 45.000 0.00 0.00 0.00 3.72
8466 10092 3.117663 GGTGTAATATCCCTTGGCCTCAA 60.118 47.826 3.32 0.00 0.00 3.02
8471 10097 5.605540 AATATCCCTTGGCCTCAATATGT 57.394 39.130 3.32 0.00 31.75 2.29
8523 10204 7.158697 TCGAAAGTCCTCTTGATGAACAATAA 58.841 34.615 0.00 0.00 37.88 1.40
8599 10324 5.061560 TGCAAAGTTTTGTCGTTGAACATTC 59.938 36.000 6.48 0.00 40.24 2.67
8600 10325 5.703428 CAAAGTTTTGTCGTTGAACATTCG 58.297 37.500 0.00 0.00 33.59 3.34
8601 10326 4.609691 AGTTTTGTCGTTGAACATTCGT 57.390 36.364 0.00 0.00 0.00 3.85
8604 10329 6.544622 AGTTTTGTCGTTGAACATTCGTAAA 58.455 32.000 0.00 0.00 0.00 2.01
8605 10330 6.685403 AGTTTTGTCGTTGAACATTCGTAAAG 59.315 34.615 0.00 0.00 0.00 1.85
8606 10331 5.721876 TTGTCGTTGAACATTCGTAAAGT 57.278 34.783 0.00 0.00 0.00 2.66
8607 10332 5.721876 TGTCGTTGAACATTCGTAAAGTT 57.278 34.783 0.00 0.00 0.00 2.66
8611 10336 6.849305 GTCGTTGAACATTCGTAAAGTTTCAT 59.151 34.615 0.00 0.00 0.00 2.57
8612 10337 7.058016 GTCGTTGAACATTCGTAAAGTTTCATC 59.942 37.037 0.00 0.00 0.00 2.92
8614 10339 7.149351 CGTTGAACATTCGTAAAGTTTCATCAC 60.149 37.037 0.00 0.00 0.00 3.06
8615 10340 6.359545 TGAACATTCGTAAAGTTTCATCACG 58.640 36.000 2.86 2.86 0.00 4.35
8616 10341 5.277601 ACATTCGTAAAGTTTCATCACGG 57.722 39.130 8.37 0.00 33.59 4.94
8617 10342 4.992319 ACATTCGTAAAGTTTCATCACGGA 59.008 37.500 8.37 1.17 33.59 4.69
8618 10343 5.467399 ACATTCGTAAAGTTTCATCACGGAA 59.533 36.000 8.37 3.60 33.59 4.30
8621 10346 5.231702 TCGTAAAGTTTCATCACGGAATGA 58.768 37.500 8.37 0.00 43.13 2.57
8622 10347 5.119588 TCGTAAAGTTTCATCACGGAATGAC 59.880 40.000 8.37 0.00 41.24 3.06
8625 10350 5.964958 AAGTTTCATCACGGAATGACATT 57.035 34.783 0.00 0.00 41.24 2.71
8627 10352 5.003160 AGTTTCATCACGGAATGACATTCA 58.997 37.500 25.59 9.05 41.24 2.57
8628 10353 5.473162 AGTTTCATCACGGAATGACATTCAA 59.527 36.000 25.59 9.86 41.24 2.69
8629 10354 5.550232 TTCATCACGGAATGACATTCAAG 57.450 39.130 25.59 20.68 41.24 3.02
8630 10355 4.831107 TCATCACGGAATGACATTCAAGA 58.169 39.130 25.59 19.62 41.24 3.02
8632 10357 5.704978 TCATCACGGAATGACATTCAAGAAA 59.295 36.000 25.59 13.95 41.24 2.52
8633 10358 5.611796 TCACGGAATGACATTCAAGAAAG 57.388 39.130 25.59 14.91 41.03 2.62
8634 10359 5.063204 TCACGGAATGACATTCAAGAAAGT 58.937 37.500 25.59 13.77 41.03 2.66
8635 10360 5.530915 TCACGGAATGACATTCAAGAAAGTT 59.469 36.000 25.59 4.44 41.03 2.66
8636 10361 5.853282 CACGGAATGACATTCAAGAAAGTTC 59.147 40.000 25.59 7.61 41.03 3.01
8637 10362 5.530915 ACGGAATGACATTCAAGAAAGTTCA 59.469 36.000 25.59 0.00 41.03 3.18
8638 10363 6.207417 ACGGAATGACATTCAAGAAAGTTCAT 59.793 34.615 25.59 2.69 41.03 2.57
8639 10364 6.525628 CGGAATGACATTCAAGAAAGTTCATG 59.474 38.462 25.59 0.00 41.03 3.07
8640 10365 7.573656 CGGAATGACATTCAAGAAAGTTCATGA 60.574 37.037 25.59 0.00 41.03 3.07
8641 10366 8.084073 GGAATGACATTCAAGAAAGTTCATGAA 58.916 33.333 25.59 12.55 45.34 2.57
8681 10532 6.726258 CTTTCCAAGCACTCAAAACTTTTT 57.274 33.333 0.00 0.00 0.00 1.94
8719 10572 9.667989 ATTTAAGAGCAATTTTGAAAATTGTGC 57.332 25.926 31.85 24.25 39.25 4.57
8757 10610 3.058129 GCAGCAAGCGTATTTTCTTTTCG 59.942 43.478 0.00 0.00 0.00 3.46
8759 10612 4.909305 CAGCAAGCGTATTTTCTTTTCGAA 59.091 37.500 0.00 0.00 0.00 3.71
8772 10644 5.873179 TCTTTTCGAAGGCGTATCATTTT 57.127 34.783 0.00 0.00 38.98 1.82
8780 10652 6.093495 TCGAAGGCGTATCATTTTCTTCATTT 59.907 34.615 0.00 0.00 38.98 2.32
8785 10657 6.456988 GGCGTATCATTTTCTTCATTTCGACT 60.457 38.462 0.00 0.00 0.00 4.18
8786 10658 6.961554 GCGTATCATTTTCTTCATTTCGACTT 59.038 34.615 0.00 0.00 0.00 3.01
8787 10659 7.162708 GCGTATCATTTTCTTCATTTCGACTTC 59.837 37.037 0.00 0.00 0.00 3.01
8791 10663 8.153479 TCATTTTCTTCATTTCGACTTCTTCA 57.847 30.769 0.00 0.00 0.00 3.02
8794 10666 9.971922 ATTTTCTTCATTTCGACTTCTTCATTT 57.028 25.926 0.00 0.00 0.00 2.32
8795 10667 9.450807 TTTTCTTCATTTCGACTTCTTCATTTC 57.549 29.630 0.00 0.00 0.00 2.17
8796 10668 6.821482 TCTTCATTTCGACTTCTTCATTTCG 58.179 36.000 0.00 0.00 0.00 3.46
8797 10669 6.645003 TCTTCATTTCGACTTCTTCATTTCGA 59.355 34.615 0.00 0.00 38.67 3.71
8798 10670 6.153212 TCATTTCGACTTCTTCATTTCGAC 57.847 37.500 0.00 0.00 40.06 4.20
8799 10671 4.624721 TTTCGACTTCTTCATTTCGACG 57.375 40.909 0.00 0.00 40.06 5.12
8800 10672 3.547649 TCGACTTCTTCATTTCGACGA 57.452 42.857 0.00 0.00 35.64 4.20
8801 10673 3.489444 TCGACTTCTTCATTTCGACGAG 58.511 45.455 0.00 0.00 35.64 4.18
8802 10674 2.026978 CGACTTCTTCATTTCGACGAGC 59.973 50.000 0.00 0.00 33.20 5.03
8803 10675 1.986378 ACTTCTTCATTTCGACGAGCG 59.014 47.619 0.00 0.00 42.69 5.03
8804 10676 1.321743 CTTCTTCATTTCGACGAGCGG 59.678 52.381 0.00 0.00 41.33 5.52
8805 10677 0.242825 TCTTCATTTCGACGAGCGGT 59.757 50.000 0.00 0.00 41.33 5.68
8806 10678 0.640768 CTTCATTTCGACGAGCGGTC 59.359 55.000 4.06 4.06 42.48 4.79
8807 10679 0.242825 TTCATTTCGACGAGCGGTCT 59.757 50.000 13.48 0.00 43.79 3.85
8808 10680 1.089112 TCATTTCGACGAGCGGTCTA 58.911 50.000 13.48 0.00 43.79 2.59
8809 10681 1.063616 TCATTTCGACGAGCGGTCTAG 59.936 52.381 13.48 3.89 43.79 2.43
8810 10682 1.063616 CATTTCGACGAGCGGTCTAGA 59.936 52.381 13.48 6.27 43.79 2.43
8836 10708 2.073117 TCACGAAAATGTGCTCGCTA 57.927 45.000 0.00 0.00 39.73 4.26
8838 10710 1.726791 CACGAAAATGTGCTCGCTACT 59.273 47.619 0.00 0.00 38.64 2.57
8840 10712 3.551890 CACGAAAATGTGCTCGCTACTAT 59.448 43.478 0.00 0.00 38.64 2.12
8845 10717 2.933495 TGTGCTCGCTACTATTCGTT 57.067 45.000 0.00 0.00 0.00 3.85
8851 10723 3.116300 CTCGCTACTATTCGTTGTGCAT 58.884 45.455 0.00 0.00 0.00 3.96
8869 10741 5.335827 TGCATCGCACAATTTTTAAAACC 57.664 34.783 0.00 0.00 31.71 3.27
8910 10782 7.973388 ACAAATCTCGAAAAGTTTTCAACATGA 59.027 29.630 24.27 13.64 0.00 3.07
8950 10908 2.086054 AGCTTTCCATCACACGTCTC 57.914 50.000 0.00 0.00 0.00 3.36
8951 10909 1.344438 AGCTTTCCATCACACGTCTCA 59.656 47.619 0.00 0.00 0.00 3.27
8992 11002 5.432885 AAACTGGATCAAAAACAGTACCG 57.567 39.130 2.52 0.00 44.08 4.02
8993 11003 3.408634 ACTGGATCAAAAACAGTACCGG 58.591 45.455 0.00 0.00 43.13 5.28
8994 11004 3.071892 ACTGGATCAAAAACAGTACCGGA 59.928 43.478 9.46 0.00 43.13 5.14
8996 11006 4.069304 TGGATCAAAAACAGTACCGGAAG 58.931 43.478 9.46 0.00 0.00 3.46
9006 11016 1.375013 TACCGGAAGAAAGGCACGC 60.375 57.895 9.46 0.00 0.00 5.34
9010 11020 1.577328 CGGAAGAAAGGCACGCACAT 61.577 55.000 0.00 0.00 0.00 3.21
9105 11115 6.491394 GTTGAACATGCAGTACAAAAGTGTA 58.509 36.000 0.00 0.00 39.30 2.90
9198 11253 6.200286 ACCACTCGCGTTTTCTATATTGTATG 59.800 38.462 5.77 0.00 0.00 2.39
9200 11255 7.057402 CACTCGCGTTTTCTATATTGTATGTG 58.943 38.462 5.77 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.807921 TGTAAGTGGAGGAAGAAAGAATAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
19 20 7.883311 CCTGTAAGTGGAGGAAGAAAGAATAAA 59.117 37.037 0.00 0.00 0.00 1.40
20 21 7.394816 CCTGTAAGTGGAGGAAGAAAGAATAA 58.605 38.462 0.00 0.00 0.00 1.40
95 841 4.423764 TTGACCGGTCAACGTGAC 57.576 55.556 39.59 12.24 46.23 3.67
134 881 1.860641 ATACGGTCACTGGATCACCA 58.139 50.000 0.00 0.00 44.76 4.17
165 912 5.062558 GCTTGTTACGGTCATTGTATACGTT 59.937 40.000 0.00 0.00 38.79 3.99
173 1133 4.328983 AGAATACGCTTGTTACGGTCATTG 59.671 41.667 0.00 0.00 34.00 2.82
176 1136 3.581024 AGAATACGCTTGTTACGGTCA 57.419 42.857 0.00 0.00 34.00 4.02
197 1157 1.068474 GCACACGATCGCTGTACTTT 58.932 50.000 16.60 0.00 0.00 2.66
205 1165 0.734253 AGTCTGAAGCACACGATCGC 60.734 55.000 16.60 0.00 0.00 4.58
206 1166 1.263776 GAGTCTGAAGCACACGATCG 58.736 55.000 14.88 14.88 0.00 3.69
211 1171 4.781071 CTCAATTTGAGTCTGAAGCACAC 58.219 43.478 16.71 0.00 39.58 3.82
228 1191 9.857656 AGATAAATACATTCATGGTCACTCAAT 57.142 29.630 0.00 0.00 0.00 2.57
231 1194 8.893219 TGAGATAAATACATTCATGGTCACTC 57.107 34.615 0.00 0.00 0.00 3.51
255 1218 9.703892 TTTACTTTCATCCATGGTTTACAAATG 57.296 29.630 12.58 6.32 0.00 2.32
256 1219 9.927668 CTTTACTTTCATCCATGGTTTACAAAT 57.072 29.630 12.58 0.00 0.00 2.32
258 1221 7.039363 CCCTTTACTTTCATCCATGGTTTACAA 60.039 37.037 12.58 0.00 0.00 2.41
259 1222 6.435904 CCCTTTACTTTCATCCATGGTTTACA 59.564 38.462 12.58 0.00 0.00 2.41
260 1223 6.627287 GCCCTTTACTTTCATCCATGGTTTAC 60.627 42.308 12.58 0.00 0.00 2.01
261 1224 5.420739 GCCCTTTACTTTCATCCATGGTTTA 59.579 40.000 12.58 0.00 0.00 2.01
265 1228 2.358898 CGCCCTTTACTTTCATCCATGG 59.641 50.000 4.97 4.97 0.00 3.66
266 1229 2.223572 GCGCCCTTTACTTTCATCCATG 60.224 50.000 0.00 0.00 0.00 3.66
268 1231 1.459450 GCGCCCTTTACTTTCATCCA 58.541 50.000 0.00 0.00 0.00 3.41
269 1232 0.377203 CGCGCCCTTTACTTTCATCC 59.623 55.000 0.00 0.00 0.00 3.51
270 1233 0.248094 GCGCGCCCTTTACTTTCATC 60.248 55.000 23.24 0.00 0.00 2.92
271 1234 0.676782 AGCGCGCCCTTTACTTTCAT 60.677 50.000 30.33 0.00 0.00 2.57
272 1235 1.302192 AGCGCGCCCTTTACTTTCA 60.302 52.632 30.33 0.00 0.00 2.69
273 1236 1.134694 CAGCGCGCCCTTTACTTTC 59.865 57.895 30.33 0.00 0.00 2.62
389 1352 0.457337 CGCACACGGGTCTAACTACC 60.457 60.000 0.00 0.00 38.94 3.18
430 1394 8.738592 AGGAAAGAGAGGATATAGGAAACTCTA 58.261 37.037 0.00 0.00 43.67 2.43
431 1395 7.601017 AGGAAAGAGAGGATATAGGAAACTCT 58.399 38.462 0.00 0.00 43.67 3.24
432 1396 7.728532 AGAGGAAAGAGAGGATATAGGAAACTC 59.271 40.741 0.00 0.00 43.67 3.01
434 1398 7.039293 GGAGAGGAAAGAGAGGATATAGGAAAC 60.039 44.444 0.00 0.00 0.00 2.78
435 1399 7.013834 GGAGAGGAAAGAGAGGATATAGGAAA 58.986 42.308 0.00 0.00 0.00 3.13
436 1400 6.557568 GGAGAGGAAAGAGAGGATATAGGAA 58.442 44.000 0.00 0.00 0.00 3.36
437 1401 5.280779 CGGAGAGGAAAGAGAGGATATAGGA 60.281 48.000 0.00 0.00 0.00 2.94
438 1402 4.947388 CGGAGAGGAAAGAGAGGATATAGG 59.053 50.000 0.00 0.00 0.00 2.57
439 1403 4.398044 GCGGAGAGGAAAGAGAGGATATAG 59.602 50.000 0.00 0.00 0.00 1.31
559 1523 0.619255 TTAGACCGAATGGAGGGGCA 60.619 55.000 0.00 0.00 39.21 5.36
576 1540 4.086457 GCTTCCAAAGAACCTCCCAATTA 58.914 43.478 0.00 0.00 0.00 1.40
645 1609 3.634910 ACCTTTACGCAAGAAACCAATGT 59.365 39.130 0.00 0.00 43.62 2.71
771 1735 5.660864 ACAGATTGAAGAAAAACTTTCCCCA 59.339 36.000 0.00 0.00 39.13 4.96
793 1757 6.018588 CGGTTAGATACAACAAACAGTTCACA 60.019 38.462 0.00 0.00 38.74 3.58
831 1795 0.893447 AAAGCTCCAATCCTGCAAGC 59.107 50.000 0.00 0.00 32.67 4.01
897 1861 1.001181 GTAGTTACCTCAACACCCGCA 59.999 52.381 0.00 0.00 39.81 5.69
989 1953 7.762615 CGACTTTTCTATCCATGGTTACTTGTA 59.237 37.037 12.58 0.00 0.00 2.41
1228 2192 2.822561 GCTCCAGGAAAAAGAAGGGAAG 59.177 50.000 0.00 0.00 0.00 3.46
1266 2230 1.482748 CCAACCCATTGCAAAGGCCT 61.483 55.000 15.33 0.00 40.13 5.19
1467 2431 8.165239 TGTGGTTGTATATCTGGCAATAAATC 57.835 34.615 0.00 0.00 0.00 2.17
1488 2452 8.928270 ACTTCTTTCGACTATAATAGTTGTGG 57.072 34.615 0.00 0.00 40.40 4.17
1512 2476 7.607991 AGCATACATCATAGGTGCCTTAAATAC 59.392 37.037 0.00 0.00 36.50 1.89
1515 2479 5.940617 AGCATACATCATAGGTGCCTTAAA 58.059 37.500 0.00 0.00 36.50 1.52
1528 2492 5.859205 TTCTTGAGCTAGAGCATACATCA 57.141 39.130 4.01 0.00 45.16 3.07
1629 2593 5.977635 TGTGGATCCAAGACTATGTAAGTG 58.022 41.667 18.20 0.00 39.07 3.16
1853 2817 1.904537 ACCCTAGTTCCTACCAAACCG 59.095 52.381 0.00 0.00 0.00 4.44
1854 2818 3.947868 GAACCCTAGTTCCTACCAAACC 58.052 50.000 0.00 0.00 45.65 3.27
1865 2829 1.360507 AGACCCGGTAGAACCCTAGTT 59.639 52.381 0.00 0.00 39.54 2.24
1866 2830 1.006020 AGACCCGGTAGAACCCTAGT 58.994 55.000 0.00 0.00 33.75 2.57
1867 2831 2.488710 CCTAGACCCGGTAGAACCCTAG 60.489 59.091 0.00 0.00 33.75 3.02
1868 2832 1.496429 CCTAGACCCGGTAGAACCCTA 59.504 57.143 0.00 0.00 33.75 3.53
1869 2833 0.261109 CCTAGACCCGGTAGAACCCT 59.739 60.000 0.00 0.00 33.75 4.34
1870 2834 0.758310 CCCTAGACCCGGTAGAACCC 60.758 65.000 0.00 0.00 33.75 4.11
1871 2835 1.398174 GCCCTAGACCCGGTAGAACC 61.398 65.000 0.00 0.00 34.05 3.62
1872 2836 1.732417 CGCCCTAGACCCGGTAGAAC 61.732 65.000 0.00 0.00 0.00 3.01
1873 2837 1.454479 CGCCCTAGACCCGGTAGAA 60.454 63.158 0.00 0.00 0.00 2.10
1874 2838 2.194056 CGCCCTAGACCCGGTAGA 59.806 66.667 0.00 0.00 0.00 2.59
1875 2839 2.910994 CCGCCCTAGACCCGGTAG 60.911 72.222 0.00 0.00 37.36 3.18
1876 2840 3.419580 TCCGCCCTAGACCCGGTA 61.420 66.667 0.00 0.00 42.48 4.02
1877 2841 4.835891 CTCCGCCCTAGACCCGGT 62.836 72.222 0.00 0.00 42.48 5.28
1878 2842 4.835891 ACTCCGCCCTAGACCCGG 62.836 72.222 0.00 0.00 43.21 5.73
1879 2843 2.356780 AAACTCCGCCCTAGACCCG 61.357 63.158 0.00 0.00 0.00 5.28
1880 2844 1.221021 CAAACTCCGCCCTAGACCC 59.779 63.158 0.00 0.00 0.00 4.46
1881 2845 1.136500 CTACAAACTCCGCCCTAGACC 59.864 57.143 0.00 0.00 0.00 3.85
1882 2846 1.136500 CCTACAAACTCCGCCCTAGAC 59.864 57.143 0.00 0.00 0.00 2.59
1883 2847 1.481871 CCTACAAACTCCGCCCTAGA 58.518 55.000 0.00 0.00 0.00 2.43
1884 2848 0.464452 CCCTACAAACTCCGCCCTAG 59.536 60.000 0.00 0.00 0.00 3.02
1885 2849 0.979187 CCCCTACAAACTCCGCCCTA 60.979 60.000 0.00 0.00 0.00 3.53
1886 2850 2.298661 CCCCTACAAACTCCGCCCT 61.299 63.158 0.00 0.00 0.00 5.19
1887 2851 1.844544 TTCCCCTACAAACTCCGCCC 61.845 60.000 0.00 0.00 0.00 6.13
1888 2852 0.392595 CTTCCCCTACAAACTCCGCC 60.393 60.000 0.00 0.00 0.00 6.13
1889 2853 0.392595 CCTTCCCCTACAAACTCCGC 60.393 60.000 0.00 0.00 0.00 5.54
1890 2854 1.207329 CTCCTTCCCCTACAAACTCCG 59.793 57.143 0.00 0.00 0.00 4.63
1891 2855 1.560146 CCTCCTTCCCCTACAAACTCC 59.440 57.143 0.00 0.00 0.00 3.85
1892 2856 1.560146 CCCTCCTTCCCCTACAAACTC 59.440 57.143 0.00 0.00 0.00 3.01
1893 2857 1.153565 TCCCTCCTTCCCCTACAAACT 59.846 52.381 0.00 0.00 0.00 2.66
1894 2858 1.560146 CTCCCTCCTTCCCCTACAAAC 59.440 57.143 0.00 0.00 0.00 2.93
1895 2859 1.557188 CCTCCCTCCTTCCCCTACAAA 60.557 57.143 0.00 0.00 0.00 2.83
1896 2860 0.044244 CCTCCCTCCTTCCCCTACAA 59.956 60.000 0.00 0.00 0.00 2.41
1897 2861 1.710341 CCTCCCTCCTTCCCCTACA 59.290 63.158 0.00 0.00 0.00 2.74
1898 2862 1.766864 GCCTCCCTCCTTCCCCTAC 60.767 68.421 0.00 0.00 0.00 3.18
1899 2863 2.703430 GCCTCCCTCCTTCCCCTA 59.297 66.667 0.00 0.00 0.00 3.53
1900 2864 4.806339 CGCCTCCCTCCTTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
1902 2866 4.798682 TCCGCCTCCCTCCTTCCC 62.799 72.222 0.00 0.00 0.00 3.97
1903 2867 2.446802 ATCCGCCTCCCTCCTTCC 60.447 66.667 0.00 0.00 0.00 3.46
1904 2868 1.753368 CTCATCCGCCTCCCTCCTTC 61.753 65.000 0.00 0.00 0.00 3.46
1905 2869 1.764054 CTCATCCGCCTCCCTCCTT 60.764 63.158 0.00 0.00 0.00 3.36
1906 2870 2.123077 CTCATCCGCCTCCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
1907 2871 3.934962 GCTCATCCGCCTCCCTCC 61.935 72.222 0.00 0.00 0.00 4.30
1908 2872 2.841988 AGCTCATCCGCCTCCCTC 60.842 66.667 0.00 0.00 0.00 4.30
1909 2873 2.841988 GAGCTCATCCGCCTCCCT 60.842 66.667 9.40 0.00 0.00 4.20
1910 2874 2.439104 AAGAGCTCATCCGCCTCCC 61.439 63.158 17.77 0.00 0.00 4.30
1911 2875 1.227497 CAAGAGCTCATCCGCCTCC 60.227 63.158 17.77 0.00 0.00 4.30
1912 2876 0.529555 GTCAAGAGCTCATCCGCCTC 60.530 60.000 17.77 0.00 0.00 4.70
1913 2877 1.519719 GTCAAGAGCTCATCCGCCT 59.480 57.895 17.77 0.00 0.00 5.52
1914 2878 1.522580 GGTCAAGAGCTCATCCGCC 60.523 63.158 17.77 7.50 0.00 6.13
1915 2879 1.880340 CGGTCAAGAGCTCATCCGC 60.880 63.158 17.77 1.67 0.00 5.54
1916 2880 1.880340 GCGGTCAAGAGCTCATCCG 60.880 63.158 24.04 24.04 40.72 4.18
1917 2881 1.880340 CGCGGTCAAGAGCTCATCC 60.880 63.158 17.77 10.95 0.00 3.51
1918 2882 2.520904 GCGCGGTCAAGAGCTCATC 61.521 63.158 17.77 2.80 34.09 2.92
1919 2883 2.510238 GCGCGGTCAAGAGCTCAT 60.510 61.111 17.77 0.00 34.09 2.90
1921 2885 4.778415 TCGCGCGGTCAAGAGCTC 62.778 66.667 31.69 5.27 34.75 4.09
1922 2886 4.785512 CTCGCGCGGTCAAGAGCT 62.786 66.667 31.69 0.00 34.75 4.09
1923 2887 4.778415 TCTCGCGCGGTCAAGAGC 62.778 66.667 31.69 0.00 0.00 4.09
1924 2888 2.876645 GTCTCGCGCGGTCAAGAG 60.877 66.667 31.69 18.82 0.00 2.85
1925 2889 4.753877 CGTCTCGCGCGGTCAAGA 62.754 66.667 31.69 22.17 0.00 3.02
1970 2934 4.838486 CTCTCCACCGCGCGAGAC 62.838 72.222 34.63 0.00 31.86 3.36
1982 2946 4.899239 CATCACCGCCGCCTCTCC 62.899 72.222 0.00 0.00 0.00 3.71
1983 2947 4.899239 CCATCACCGCCGCCTCTC 62.899 72.222 0.00 0.00 0.00 3.20
1989 2953 4.227134 CTCCTCCCATCACCGCCG 62.227 72.222 0.00 0.00 0.00 6.46
1990 2954 3.866582 CCTCCTCCCATCACCGCC 61.867 72.222 0.00 0.00 0.00 6.13
1991 2955 4.554036 GCCTCCTCCCATCACCGC 62.554 72.222 0.00 0.00 0.00 5.68
1992 2956 4.227134 CGCCTCCTCCCATCACCG 62.227 72.222 0.00 0.00 0.00 4.94
1993 2957 3.866582 CCGCCTCCTCCCATCACC 61.867 72.222 0.00 0.00 0.00 4.02
1994 2958 4.554036 GCCGCCTCCTCCCATCAC 62.554 72.222 0.00 0.00 0.00 3.06
2010 2974 3.497031 GAACCCTAACTGCGCCGC 61.497 66.667 4.18 0.00 0.00 6.53
2011 2975 2.818274 GGAACCCTAACTGCGCCG 60.818 66.667 4.18 0.00 0.00 6.46
2012 2976 2.818274 CGGAACCCTAACTGCGCC 60.818 66.667 4.18 0.00 0.00 6.53
2013 2977 2.818274 CCGGAACCCTAACTGCGC 60.818 66.667 0.00 0.00 0.00 6.09
2014 2978 2.818274 GCCGGAACCCTAACTGCG 60.818 66.667 5.05 0.00 0.00 5.18
2015 2979 1.449778 GAGCCGGAACCCTAACTGC 60.450 63.158 5.05 0.00 0.00 4.40
2016 2980 1.221021 GGAGCCGGAACCCTAACTG 59.779 63.158 5.05 0.00 0.00 3.16
2017 2981 0.976590 GAGGAGCCGGAACCCTAACT 60.977 60.000 5.05 0.00 0.00 2.24
2018 2982 0.976590 AGAGGAGCCGGAACCCTAAC 60.977 60.000 5.05 0.00 0.00 2.34
2019 2983 0.686769 GAGAGGAGCCGGAACCCTAA 60.687 60.000 5.05 0.00 0.00 2.69
2020 2984 1.076192 GAGAGGAGCCGGAACCCTA 60.076 63.158 5.05 0.00 0.00 3.53
2021 2985 2.364448 GAGAGGAGCCGGAACCCT 60.364 66.667 5.05 7.67 0.00 4.34
2022 2986 3.839432 CGAGAGGAGCCGGAACCC 61.839 72.222 5.05 1.57 0.00 4.11
2034 2998 2.498941 TATTGCCCGGCTCCGAGAG 61.499 63.158 11.61 0.00 42.83 3.20
2035 2999 2.443203 TATTGCCCGGCTCCGAGA 60.443 61.111 11.61 0.00 42.83 4.04
2036 3000 2.280186 GTATTGCCCGGCTCCGAG 60.280 66.667 11.61 0.00 42.83 4.63
2037 3001 1.978455 ATTGTATTGCCCGGCTCCGA 61.978 55.000 11.61 0.00 42.83 4.55
2038 3002 1.101049 AATTGTATTGCCCGGCTCCG 61.101 55.000 11.61 0.48 39.44 4.63
2039 3003 0.385390 CAATTGTATTGCCCGGCTCC 59.615 55.000 11.61 0.00 0.00 4.70
2040 3004 1.065551 GACAATTGTATTGCCCGGCTC 59.934 52.381 11.95 0.00 0.00 4.70
2041 3005 1.102978 GACAATTGTATTGCCCGGCT 58.897 50.000 11.95 0.00 0.00 5.52
2042 3006 1.102978 AGACAATTGTATTGCCCGGC 58.897 50.000 11.95 1.04 0.00 6.13
2043 3007 5.280945 CAATAAGACAATTGTATTGCCCGG 58.719 41.667 24.90 8.93 33.11 5.73
2052 3016 9.995003 TGGAAAATTAAGCAATAAGACAATTGT 57.005 25.926 11.78 11.78 38.78 2.71
2057 3021 9.912634 CTCTTTGGAAAATTAAGCAATAAGACA 57.087 29.630 0.00 0.00 0.00 3.41
2058 3022 9.358872 CCTCTTTGGAAAATTAAGCAATAAGAC 57.641 33.333 0.00 0.00 38.35 3.01
2059 3023 9.088987 ACCTCTTTGGAAAATTAAGCAATAAGA 57.911 29.630 0.00 0.00 39.71 2.10
2060 3024 9.358872 GACCTCTTTGGAAAATTAAGCAATAAG 57.641 33.333 0.00 0.00 39.71 1.73
2061 3025 9.088987 AGACCTCTTTGGAAAATTAAGCAATAA 57.911 29.630 0.00 0.00 39.71 1.40
2062 3026 8.650143 AGACCTCTTTGGAAAATTAAGCAATA 57.350 30.769 0.00 0.00 39.71 1.90
2063 3027 7.544804 AGACCTCTTTGGAAAATTAAGCAAT 57.455 32.000 0.00 0.00 39.71 3.56
2064 3028 6.976934 AGACCTCTTTGGAAAATTAAGCAA 57.023 33.333 0.00 0.00 39.71 3.91
2065 3029 6.976934 AAGACCTCTTTGGAAAATTAAGCA 57.023 33.333 0.00 0.00 39.71 3.91
2066 3030 7.882179 TGTAAGACCTCTTTGGAAAATTAAGC 58.118 34.615 0.00 0.00 39.71 3.09
2067 3031 8.023706 GCTGTAAGACCTCTTTGGAAAATTAAG 58.976 37.037 0.00 0.00 39.71 1.85
2068 3032 7.724061 AGCTGTAAGACCTCTTTGGAAAATTAA 59.276 33.333 0.00 0.00 39.71 1.40
2069 3033 7.174946 CAGCTGTAAGACCTCTTTGGAAAATTA 59.825 37.037 5.25 0.00 39.71 1.40
2070 3034 6.015940 CAGCTGTAAGACCTCTTTGGAAAATT 60.016 38.462 5.25 0.00 39.71 1.82
2071 3035 5.474876 CAGCTGTAAGACCTCTTTGGAAAAT 59.525 40.000 5.25 0.00 39.71 1.82
2072 3036 4.821805 CAGCTGTAAGACCTCTTTGGAAAA 59.178 41.667 5.25 0.00 39.71 2.29
2073 3037 4.141482 ACAGCTGTAAGACCTCTTTGGAAA 60.141 41.667 20.16 0.00 39.71 3.13
2074 3038 3.391296 ACAGCTGTAAGACCTCTTTGGAA 59.609 43.478 20.16 0.00 39.71 3.53
2075 3039 2.972713 ACAGCTGTAAGACCTCTTTGGA 59.027 45.455 20.16 0.00 39.71 3.53
2076 3040 3.409026 ACAGCTGTAAGACCTCTTTGG 57.591 47.619 20.16 0.00 42.93 3.28
2077 3041 8.723942 ATATAAACAGCTGTAAGACCTCTTTG 57.276 34.615 22.01 0.00 37.40 2.77
2083 3047 9.130312 CGAGATTATATAAACAGCTGTAAGACC 57.870 37.037 22.01 3.79 34.07 3.85
2084 3048 9.130312 CCGAGATTATATAAACAGCTGTAAGAC 57.870 37.037 22.01 8.00 34.07 3.01
2085 3049 8.857098 ACCGAGATTATATAAACAGCTGTAAGA 58.143 33.333 22.01 9.42 34.07 2.10
2086 3050 8.916654 CACCGAGATTATATAAACAGCTGTAAG 58.083 37.037 22.01 0.00 0.00 2.34
2087 3051 7.384115 GCACCGAGATTATATAAACAGCTGTAA 59.616 37.037 22.01 12.23 0.00 2.41
2088 3052 6.866770 GCACCGAGATTATATAAACAGCTGTA 59.133 38.462 22.01 5.63 0.00 2.74
2089 3053 5.696724 GCACCGAGATTATATAAACAGCTGT 59.303 40.000 15.25 15.25 0.00 4.40
2090 3054 5.928839 AGCACCGAGATTATATAAACAGCTG 59.071 40.000 13.48 13.48 0.00 4.24
2091 3055 6.102897 AGCACCGAGATTATATAAACAGCT 57.897 37.500 0.00 0.69 0.00 4.24
2092 3056 7.884816 TTAGCACCGAGATTATATAAACAGC 57.115 36.000 0.00 0.00 0.00 4.40
2118 3082 8.909923 GGCTTAGCCCAAGTTATCTTATTTTTA 58.090 33.333 13.12 0.00 44.06 1.52
2119 3083 7.782049 GGCTTAGCCCAAGTTATCTTATTTTT 58.218 34.615 13.12 0.00 44.06 1.94
2120 3084 7.348080 GGCTTAGCCCAAGTTATCTTATTTT 57.652 36.000 13.12 0.00 44.06 1.82
2121 3085 6.961360 GGCTTAGCCCAAGTTATCTTATTT 57.039 37.500 13.12 0.00 44.06 1.40
2137 3101 2.934553 CACGTTTAGTTAGGGGCTTAGC 59.065 50.000 0.00 0.00 0.00 3.09
2138 3102 2.934553 GCACGTTTAGTTAGGGGCTTAG 59.065 50.000 0.00 0.00 30.00 2.18
2139 3103 2.355007 GGCACGTTTAGTTAGGGGCTTA 60.355 50.000 0.00 0.00 33.06 3.09
2140 3104 1.612462 GGCACGTTTAGTTAGGGGCTT 60.612 52.381 0.00 0.00 33.06 4.35
2141 3105 0.035725 GGCACGTTTAGTTAGGGGCT 60.036 55.000 0.00 0.00 33.06 5.19
2142 3106 1.028330 GGGCACGTTTAGTTAGGGGC 61.028 60.000 0.00 0.00 0.00 5.80
2143 3107 0.325602 TGGGCACGTTTAGTTAGGGG 59.674 55.000 0.00 0.00 0.00 4.79
2144 3108 2.413310 ATGGGCACGTTTAGTTAGGG 57.587 50.000 0.00 0.00 0.00 3.53
2145 3109 2.422127 CCAATGGGCACGTTTAGTTAGG 59.578 50.000 0.00 0.00 0.00 2.69
2146 3110 2.422127 CCCAATGGGCACGTTTAGTTAG 59.578 50.000 4.89 0.00 35.35 2.34
2147 3111 2.438411 CCCAATGGGCACGTTTAGTTA 58.562 47.619 4.89 0.00 35.35 2.24
2148 3112 1.253100 CCCAATGGGCACGTTTAGTT 58.747 50.000 4.89 0.00 35.35 2.24
2149 3113 2.955609 CCCAATGGGCACGTTTAGT 58.044 52.632 4.89 0.00 35.35 2.24
2168 3132 6.063461 GGTGTAACTTATAGCCGGAGGAGG 62.063 54.167 5.05 0.00 46.63 4.30
2169 3133 3.005578 GGTGTAACTTATAGCCGGAGGAG 59.994 52.174 5.05 0.00 46.63 3.69
2170 3134 2.961062 GGTGTAACTTATAGCCGGAGGA 59.039 50.000 5.05 0.00 46.63 3.71
2171 3135 2.288030 CGGTGTAACTTATAGCCGGAGG 60.288 54.545 5.05 0.00 46.45 4.30
2172 3136 3.009301 CGGTGTAACTTATAGCCGGAG 57.991 52.381 5.05 0.00 36.74 4.63
2175 3139 2.099592 TGACCGGTGTAACTTATAGCCG 59.900 50.000 14.63 0.00 36.74 5.52
2176 3140 3.806625 TGACCGGTGTAACTTATAGCC 57.193 47.619 14.63 0.00 36.74 3.93
2177 3141 6.199719 GTGTTATGACCGGTGTAACTTATAGC 59.800 42.308 27.00 12.63 36.74 2.97
2178 3142 6.415867 CGTGTTATGACCGGTGTAACTTATAG 59.584 42.308 27.00 16.05 36.74 1.31
2179 3143 6.264832 CGTGTTATGACCGGTGTAACTTATA 58.735 40.000 27.00 13.35 36.74 0.98
2180 3144 5.104374 CGTGTTATGACCGGTGTAACTTAT 58.896 41.667 27.00 10.11 36.74 1.73
2181 3145 4.484236 CGTGTTATGACCGGTGTAACTTA 58.516 43.478 27.00 14.10 36.74 2.24
2182 3146 3.319755 CGTGTTATGACCGGTGTAACTT 58.680 45.455 27.00 11.17 36.74 2.66
2183 3147 2.353011 CCGTGTTATGACCGGTGTAACT 60.353 50.000 27.00 8.10 35.91 2.24
2184 3148 1.994779 CCGTGTTATGACCGGTGTAAC 59.005 52.381 23.21 23.21 35.91 2.50
2185 3149 1.617850 ACCGTGTTATGACCGGTGTAA 59.382 47.619 14.63 8.53 45.10 2.41
2186 3150 1.255882 ACCGTGTTATGACCGGTGTA 58.744 50.000 14.63 0.00 45.10 2.90
2187 3151 0.393820 AACCGTGTTATGACCGGTGT 59.606 50.000 14.63 2.27 45.65 4.16
2188 3152 0.793861 CAACCGTGTTATGACCGGTG 59.206 55.000 14.63 11.87 45.65 4.94
2190 3154 0.320946 ACCAACCGTGTTATGACCGG 60.321 55.000 13.48 13.48 42.01 5.28
2191 3155 2.367030 TACCAACCGTGTTATGACCG 57.633 50.000 0.00 0.00 0.00 4.79
2192 3156 4.093850 GTGAATACCAACCGTGTTATGACC 59.906 45.833 0.00 0.00 0.00 4.02
2193 3157 4.691685 TGTGAATACCAACCGTGTTATGAC 59.308 41.667 0.00 0.00 0.00 3.06
2194 3158 4.895961 TGTGAATACCAACCGTGTTATGA 58.104 39.130 0.00 0.00 0.00 2.15
2195 3159 4.436852 GCTGTGAATACCAACCGTGTTATG 60.437 45.833 0.00 0.00 0.00 1.90
2196 3160 3.687698 GCTGTGAATACCAACCGTGTTAT 59.312 43.478 0.00 0.00 0.00 1.89
2197 3161 3.068560 GCTGTGAATACCAACCGTGTTA 58.931 45.455 0.00 0.00 0.00 2.41
2198 3162 1.877443 GCTGTGAATACCAACCGTGTT 59.123 47.619 0.00 0.00 0.00 3.32
2199 3163 1.519408 GCTGTGAATACCAACCGTGT 58.481 50.000 0.00 0.00 0.00 4.49
2200 3164 0.442310 CGCTGTGAATACCAACCGTG 59.558 55.000 0.00 0.00 0.00 4.94
2201 3165 0.034337 ACGCTGTGAATACCAACCGT 59.966 50.000 0.00 0.00 0.00 4.83
2310 3274 2.943402 GGGAATGACCAGCATTGAGCG 61.943 57.143 0.00 0.00 46.90 5.03
2344 3308 1.006701 GTATTACCGTTCGCGAACTGC 60.007 52.381 39.54 25.00 44.71 4.40
2402 3366 2.635915 TCATTCTACACCCGTTTGAGGT 59.364 45.455 0.00 0.00 38.48 3.85
2407 3371 2.353406 CGGTCTCATTCTACACCCGTTT 60.353 50.000 0.00 0.00 0.00 3.60
2457 3421 1.447140 TACAAGGTCATGCCGACGC 60.447 57.895 0.00 0.00 46.42 5.19
2488 3452 1.089920 GGCTGATGCTCAACGTTGAT 58.910 50.000 29.79 16.64 39.59 2.57
2530 3494 2.041301 AGCGGTACAGGGCCCATA 60.041 61.111 27.56 13.68 0.00 2.74
2575 3539 0.899717 GCCATTCCTTTCCTGCCACA 60.900 55.000 0.00 0.00 0.00 4.17
2659 3623 8.229253 TGTTGTAGACTTGTAGTTACAGAGAA 57.771 34.615 7.82 0.00 37.52 2.87
2663 3628 7.152645 ACCATGTTGTAGACTTGTAGTTACAG 58.847 38.462 0.00 0.00 37.52 2.74
2723 3688 8.902540 AACAAACCCTTTGAAAAAGATATTCC 57.097 30.769 1.75 0.00 43.26 3.01
2770 3736 4.141287 ACATTAGCTGCAGTACAACCAAA 58.859 39.130 16.64 0.00 0.00 3.28
2771 3737 3.750371 ACATTAGCTGCAGTACAACCAA 58.250 40.909 16.64 0.00 0.00 3.67
2772 3738 3.417069 ACATTAGCTGCAGTACAACCA 57.583 42.857 16.64 0.00 0.00 3.67
2773 3739 3.751175 TCAACATTAGCTGCAGTACAACC 59.249 43.478 16.64 0.00 0.00 3.77
2774 3740 4.452455 ACTCAACATTAGCTGCAGTACAAC 59.548 41.667 16.64 0.00 0.00 3.32
2775 3741 4.452114 CACTCAACATTAGCTGCAGTACAA 59.548 41.667 16.64 7.38 0.00 2.41
2776 3742 3.996363 CACTCAACATTAGCTGCAGTACA 59.004 43.478 16.64 0.00 0.00 2.90
2777 3743 3.181516 GCACTCAACATTAGCTGCAGTAC 60.182 47.826 16.64 0.00 0.00 2.73
2778 3744 3.002791 GCACTCAACATTAGCTGCAGTA 58.997 45.455 16.64 3.74 0.00 2.74
2779 3745 1.808945 GCACTCAACATTAGCTGCAGT 59.191 47.619 16.64 4.79 0.00 4.40
2780 3746 2.082231 AGCACTCAACATTAGCTGCAG 58.918 47.619 10.11 10.11 33.67 4.41
2781 3747 2.079158 GAGCACTCAACATTAGCTGCA 58.921 47.619 1.02 0.00 35.36 4.41
2782 3748 2.079158 TGAGCACTCAACATTAGCTGC 58.921 47.619 0.00 0.00 36.53 5.25
2810 3776 3.081804 GGCACAATGTTAGCTGGTAAGT 58.918 45.455 0.00 0.00 0.00 2.24
3074 4040 5.376625 TGACATTTAAGGTTTCAGCTCAGT 58.623 37.500 0.00 0.00 0.00 3.41
3147 4113 6.019762 GCGGTTAACAAGTTTATTCTAGTGC 58.980 40.000 8.10 0.00 0.00 4.40
3465 4431 3.521560 TGTTGTGCACTGCTATAGCTAC 58.478 45.455 24.61 15.22 42.66 3.58
3756 4723 7.798596 TCTCAATAAGAATGAAGATTCCAGC 57.201 36.000 0.00 0.00 39.14 4.85
3783 4757 3.206150 CTGGAATGCAGCTACGGTTAAT 58.794 45.455 0.00 0.00 0.00 1.40
3861 4835 4.634012 AATGGAGCAGCCCGTATTAATA 57.366 40.909 0.00 0.00 34.97 0.98
4042 5016 2.296471 GACACCATGGACTCGGTATAGG 59.704 54.545 21.47 0.00 32.98 2.57
4067 5041 7.115095 GTGTATATGATTAGAACGCTGAAGGAC 59.885 40.741 0.00 0.00 0.00 3.85
4099 5073 0.394565 AGACCACACAGCTTGTCCTC 59.605 55.000 0.00 0.00 35.67 3.71
4164 5138 4.620982 CAGTAGTGTCATGTCACTTGTCA 58.379 43.478 26.66 9.58 44.92 3.58
4165 5139 3.430218 GCAGTAGTGTCATGTCACTTGTC 59.570 47.826 26.66 17.86 44.92 3.18
4166 5140 3.181466 TGCAGTAGTGTCATGTCACTTGT 60.181 43.478 26.66 13.99 44.92 3.16
4167 5141 3.185188 GTGCAGTAGTGTCATGTCACTTG 59.815 47.826 26.66 20.80 44.92 3.16
4168 5142 3.070159 AGTGCAGTAGTGTCATGTCACTT 59.930 43.478 26.66 10.57 44.92 3.16
4170 5144 3.032017 AGTGCAGTAGTGTCATGTCAC 57.968 47.619 14.28 14.28 38.46 3.67
4291 5265 6.926272 ACTTGAGTTTAGATGAGTTCTCACAC 59.074 38.462 4.58 3.28 35.79 3.82
4340 5314 3.793827 ACCATTCCATACAAGGGGAAGAT 59.206 43.478 0.00 0.00 45.70 2.40
4382 5356 7.390440 TCAGTCGATGAATTGTTCACCTATTTT 59.610 33.333 0.00 0.00 43.48 1.82
4470 5455 4.704833 GGAGACAGCAAGCCGGCA 62.705 66.667 31.54 0.00 35.83 5.69
4478 5463 1.248101 TTCATCGACGGGAGACAGCA 61.248 55.000 0.00 0.00 0.00 4.41
4514 5499 3.118592 GGATACAGAAAGGTGTGGAGGAG 60.119 52.174 0.00 0.00 31.46 3.69
4550 5535 1.351017 TGGGTGGACCATGAAGAACTC 59.649 52.381 0.00 0.00 46.80 3.01
4700 5685 4.572985 CCAATATTTGGCGATGTGATGT 57.427 40.909 0.00 0.00 45.17 3.06
4843 5830 1.136110 CATGATTGCCAGCTTGATGCA 59.864 47.619 0.00 0.00 45.94 3.96
4936 5923 2.635714 CCCACAACTAATCGGGTTACC 58.364 52.381 0.00 0.00 33.67 2.85
4951 5938 3.778075 AGTTATGCACATACCTACCCACA 59.222 43.478 0.00 0.00 0.00 4.17
5166 6715 5.413523 ACGTTGTGTTAGTCTTGGACTTTTT 59.586 36.000 5.50 0.00 40.28 1.94
5382 6931 1.299541 CTTGCAATACCGCCTACAGG 58.700 55.000 0.00 0.00 38.53 4.00
5383 6932 1.134521 TCCTTGCAATACCGCCTACAG 60.135 52.381 0.00 0.00 0.00 2.74
5384 6933 0.906066 TCCTTGCAATACCGCCTACA 59.094 50.000 0.00 0.00 0.00 2.74
5385 6934 1.669265 GTTCCTTGCAATACCGCCTAC 59.331 52.381 0.00 0.00 0.00 3.18
5386 6935 1.279558 TGTTCCTTGCAATACCGCCTA 59.720 47.619 0.00 0.00 0.00 3.93
5387 6936 0.037590 TGTTCCTTGCAATACCGCCT 59.962 50.000 0.00 0.00 0.00 5.52
5388 6937 0.885196 TTGTTCCTTGCAATACCGCC 59.115 50.000 0.00 0.00 0.00 6.13
5394 6943 9.553064 TTGTATGTTAAAATTGTTCCTTGCAAT 57.447 25.926 0.00 0.00 38.09 3.56
5437 6986 5.344743 TCTATCTCTGACCAACATTCCAC 57.655 43.478 0.00 0.00 0.00 4.02
5509 7058 1.128200 CCCATCAGGTAATCCGACCA 58.872 55.000 0.00 0.00 42.47 4.02
5557 7106 0.541063 CAAACCCACAACCCTACCCC 60.541 60.000 0.00 0.00 0.00 4.95
5587 7136 2.178580 CACATGCCCAAACCCACTATT 58.821 47.619 0.00 0.00 0.00 1.73
5598 7147 0.250858 CTCAACCAGACACATGCCCA 60.251 55.000 0.00 0.00 0.00 5.36
5727 7277 0.742505 CGGGTAAGCATCACGTAGGA 59.257 55.000 0.00 0.00 0.00 2.94
5733 7283 1.463444 GAACACACGGGTAAGCATCAC 59.537 52.381 0.00 0.00 0.00 3.06
6012 7562 6.366315 GGTGTGTGTGCCGAAATTAATATA 57.634 37.500 0.00 0.00 0.00 0.86
6033 7583 1.308998 CCTTCAAGTTTGAGTGCGGT 58.691 50.000 0.00 0.00 38.61 5.68
6063 7613 2.223618 GCTCGGGAGTACAGATGAACTC 60.224 54.545 0.00 0.00 41.16 3.01
6174 7725 9.016623 GGACACAAAAACTAACATACAAAAGAC 57.983 33.333 0.00 0.00 0.00 3.01
6188 7739 4.493547 CAACACACATGGACACAAAAACT 58.506 39.130 0.00 0.00 0.00 2.66
6527 8082 4.811557 GCACTTAGCCTTATTGGACTACAG 59.188 45.833 0.00 0.00 38.35 2.74
6602 8157 1.002201 TGTCAATTAGGTTCGGCGGAA 59.998 47.619 7.21 2.05 0.00 4.30
6606 8161 5.054390 TGATTTTGTCAATTAGGTTCGGC 57.946 39.130 0.00 0.00 32.78 5.54
6711 8269 4.705991 TGTGATGCCATTTCTCTAATTGCA 59.294 37.500 0.00 0.00 45.57 4.08
6830 8388 8.717821 GCACAAGTCATTCACAAAGTAATACTA 58.282 33.333 0.00 0.00 0.00 1.82
6831 8389 7.308589 GGCACAAGTCATTCACAAAGTAATACT 60.309 37.037 0.00 0.00 0.00 2.12
6832 8390 6.801862 GGCACAAGTCATTCACAAAGTAATAC 59.198 38.462 0.00 0.00 0.00 1.89
6833 8391 6.488344 TGGCACAAGTCATTCACAAAGTAATA 59.512 34.615 0.00 0.00 31.92 0.98
6834 8392 5.301551 TGGCACAAGTCATTCACAAAGTAAT 59.698 36.000 0.00 0.00 31.92 1.89
6835 8393 4.642437 TGGCACAAGTCATTCACAAAGTAA 59.358 37.500 0.00 0.00 31.92 2.24
6836 8394 4.036262 GTGGCACAAGTCATTCACAAAGTA 59.964 41.667 13.86 0.00 44.16 2.24
6837 8395 3.023119 TGGCACAAGTCATTCACAAAGT 58.977 40.909 0.00 0.00 31.92 2.66
6838 8396 3.181488 TGTGGCACAAGTCATTCACAAAG 60.181 43.478 19.74 0.00 44.16 2.77
6839 8397 2.757314 TGTGGCACAAGTCATTCACAAA 59.243 40.909 19.74 0.00 44.16 2.83
6840 8398 2.358582 CTGTGGCACAAGTCATTCACAA 59.641 45.455 22.31 0.00 44.16 3.33
6841 8399 1.948834 CTGTGGCACAAGTCATTCACA 59.051 47.619 22.31 0.00 44.16 3.58
6842 8400 1.335324 GCTGTGGCACAAGTCATTCAC 60.335 52.381 22.31 0.00 44.16 3.18
6843 8401 0.953727 GCTGTGGCACAAGTCATTCA 59.046 50.000 22.31 0.00 44.16 2.57
6844 8402 1.068748 CAGCTGTGGCACAAGTCATTC 60.069 52.381 22.31 5.00 44.16 2.67
6845 8403 0.956633 CAGCTGTGGCACAAGTCATT 59.043 50.000 22.31 0.84 44.16 2.57
6846 8404 0.179009 ACAGCTGTGGCACAAGTCAT 60.179 50.000 20.97 3.55 44.16 3.06
6847 8405 0.394216 AACAGCTGTGGCACAAGTCA 60.394 50.000 22.49 0.00 44.16 3.41
6848 8406 0.740737 AAACAGCTGTGGCACAAGTC 59.259 50.000 22.49 13.19 44.16 3.01
6849 8407 1.676006 GTAAACAGCTGTGGCACAAGT 59.324 47.619 22.49 16.71 44.16 3.16
6850 8408 1.675483 TGTAAACAGCTGTGGCACAAG 59.325 47.619 22.49 16.07 44.16 3.16
6851 8409 1.403679 GTGTAAACAGCTGTGGCACAA 59.596 47.619 28.47 1.28 44.16 3.33
6852 8410 1.021202 GTGTAAACAGCTGTGGCACA 58.979 50.000 28.47 24.22 41.70 4.57
6853 8411 0.041312 CGTGTAAACAGCTGTGGCAC 60.041 55.000 22.49 24.72 41.70 5.01
6854 8412 0.462937 ACGTGTAAACAGCTGTGGCA 60.463 50.000 22.49 16.36 41.70 4.92
7258 8816 3.450457 CAGAGGCTACTTGAGATGGAGTT 59.550 47.826 0.00 0.00 0.00 3.01
7713 9333 8.675705 ATGTAATGACATTGACGGATGATTTA 57.324 30.769 11.05 0.00 44.18 1.40
7747 9367 2.310349 TGAGGACACTAAGAGAGAGCCT 59.690 50.000 0.00 0.00 0.00 4.58
8085 9705 0.465460 TGAAGACACGGCCAAAGCTT 60.465 50.000 2.24 0.00 39.73 3.74
8146 9766 5.086621 AGCAAAACCAAAACCTATCAGGAT 58.913 37.500 0.00 0.00 37.67 3.24
8178 9798 5.183530 AGATGAATCTGGTGGACATCAAA 57.816 39.130 0.00 0.00 39.49 2.69
8313 9933 7.040478 TCACTTTGTTCATACAAGGAAAGGATG 60.040 37.037 7.08 0.00 44.56 3.51
8395 10021 4.439016 GGCGGTCTTTTCTTTTGTGTTGTA 60.439 41.667 0.00 0.00 0.00 2.41
8466 10092 1.473965 CCTCGTGCTCAGCCAACATAT 60.474 52.381 0.00 0.00 0.00 1.78
8471 10097 1.881903 CTCTCCTCGTGCTCAGCCAA 61.882 60.000 0.00 0.00 0.00 4.52
8599 10324 5.107259 TGTCATTCCGTGATGAAACTTTACG 60.107 40.000 0.15 0.00 39.48 3.18
8600 10325 6.236017 TGTCATTCCGTGATGAAACTTTAC 57.764 37.500 0.15 0.00 39.48 2.01
8601 10326 7.174080 TGAATGTCATTCCGTGATGAAACTTTA 59.826 33.333 20.41 0.00 39.48 1.85
8604 10329 5.003160 TGAATGTCATTCCGTGATGAAACT 58.997 37.500 20.41 0.00 39.48 2.66
8605 10330 5.295431 TGAATGTCATTCCGTGATGAAAC 57.705 39.130 20.41 0.00 39.48 2.78
8606 10331 5.704978 TCTTGAATGTCATTCCGTGATGAAA 59.295 36.000 20.41 6.77 39.48 2.69
8607 10332 5.244755 TCTTGAATGTCATTCCGTGATGAA 58.755 37.500 20.41 7.39 39.48 2.57
8611 10336 5.063204 ACTTTCTTGAATGTCATTCCGTGA 58.937 37.500 20.41 13.34 38.50 4.35
8612 10337 5.362556 ACTTTCTTGAATGTCATTCCGTG 57.637 39.130 20.41 11.58 38.50 4.94
8614 10339 6.000891 TGAACTTTCTTGAATGTCATTCCG 57.999 37.500 20.41 12.66 38.50 4.30
8615 10340 7.596494 TCATGAACTTTCTTGAATGTCATTCC 58.404 34.615 20.41 5.76 38.10 3.01
8638 10363 9.187996 TGGAAAGCTATCATAAAATGACATTCA 57.812 29.630 0.05 0.00 43.01 2.57
8681 10532 6.552859 TTGCTCTTAAATTGTGACGAATCA 57.447 33.333 0.00 0.00 0.00 2.57
8719 10572 3.945434 GCCACTCATCATGCGCCG 61.945 66.667 4.18 0.00 0.00 6.46
8740 10593 4.473199 GCCTTCGAAAAGAAAATACGCTT 58.527 39.130 0.00 0.00 38.57 4.68
8755 10608 4.500127 TGAAGAAAATGATACGCCTTCGA 58.500 39.130 0.00 0.00 39.41 3.71
8757 10610 6.412072 CGAAATGAAGAAAATGATACGCCTTC 59.588 38.462 0.00 0.00 0.00 3.46
8759 10612 5.584649 TCGAAATGAAGAAAATGATACGCCT 59.415 36.000 0.00 0.00 0.00 5.52
8772 10644 6.645003 TCGAAATGAAGAAGTCGAAATGAAGA 59.355 34.615 0.00 0.00 39.40 2.87
8780 10652 3.489444 CTCGTCGAAATGAAGAAGTCGA 58.511 45.455 0.00 0.00 40.00 4.20
8785 10657 1.336517 ACCGCTCGTCGAAATGAAGAA 60.337 47.619 0.00 0.00 41.67 2.52
8786 10658 0.242825 ACCGCTCGTCGAAATGAAGA 59.757 50.000 0.00 0.00 41.67 2.87
8787 10659 0.640768 GACCGCTCGTCGAAATGAAG 59.359 55.000 0.00 0.00 41.67 3.02
8789 10661 1.063616 CTAGACCGCTCGTCGAAATGA 59.936 52.381 0.00 0.00 46.92 2.57
8790 10662 1.063616 TCTAGACCGCTCGTCGAAATG 59.936 52.381 0.00 0.00 46.92 2.32
8791 10663 1.376543 TCTAGACCGCTCGTCGAAAT 58.623 50.000 0.00 0.00 46.92 2.17
8794 10666 1.159285 TTTTCTAGACCGCTCGTCGA 58.841 50.000 0.00 0.00 46.92 4.20
8795 10667 1.973138 TTTTTCTAGACCGCTCGTCG 58.027 50.000 0.00 0.00 46.92 5.12
8836 10708 1.720805 TGCGATGCACAACGAATAGT 58.279 45.000 12.67 0.00 31.71 2.12
8851 10723 3.707793 AGCGGTTTTAAAAATTGTGCGA 58.292 36.364 1.31 0.00 0.00 5.10
8869 10741 6.472486 TCGAGATTTGTCATAGTTTAAGAGCG 59.528 38.462 0.00 0.00 0.00 5.03
8910 10782 2.851263 TGGAATAGGCACAACTTCGT 57.149 45.000 0.00 0.00 0.00 3.85
8927 10877 2.609459 GACGTGTGATGGAAAGCTATGG 59.391 50.000 0.00 0.00 0.00 2.74
8950 10908 7.749539 AGTTTTTAAACTGTTTGTCGGAATG 57.250 32.000 15.69 0.00 46.80 2.67
8979 10989 4.791734 GCCTTTCTTCCGGTACTGTTTTTG 60.792 45.833 0.00 0.00 0.00 2.44
8992 11002 0.598065 AATGTGCGTGCCTTTCTTCC 59.402 50.000 0.00 0.00 0.00 3.46
8993 11003 2.422276 AAATGTGCGTGCCTTTCTTC 57.578 45.000 0.00 0.00 0.00 2.87
8994 11004 2.888834 AAAATGTGCGTGCCTTTCTT 57.111 40.000 0.00 0.00 0.00 2.52
9030 11040 5.481200 GTACTGCAGTACTGAGACGAATA 57.519 43.478 38.13 10.99 45.47 1.75
9032 11042 3.826236 GTACTGCAGTACTGAGACGAA 57.174 47.619 38.13 11.70 45.47 3.85
9138 11163 8.906867 CCACTGATGGTAAGAAATATTTGTCAT 58.093 33.333 5.17 1.76 41.64 3.06
9139 11164 8.279970 CCACTGATGGTAAGAAATATTTGTCA 57.720 34.615 5.17 0.00 41.64 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.