Multiple sequence alignment - TraesCS1B01G148500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G148500 chr1B 100.000 6343 0 0 1 6343 217559163 217565505 0.000000e+00 11714.0
1 TraesCS1B01G148500 chr1B 92.593 810 39 11 1 792 540152979 540153785 0.000000e+00 1144.0
2 TraesCS1B01G148500 chr1D 94.774 3272 103 30 2934 6168 159142000 159145240 0.000000e+00 5033.0
3 TraesCS1B01G148500 chr1D 94.121 2024 69 21 836 2812 159139804 159141824 0.000000e+00 3033.0
4 TraesCS1B01G148500 chr1A 93.865 3325 112 39 2895 6168 233922596 233925879 0.000000e+00 4926.0
5 TraesCS1B01G148500 chr1A 93.800 1742 46 18 926 2633 233920894 233922607 0.000000e+00 2562.0
6 TraesCS1B01G148500 chr1A 88.293 820 72 11 1 796 566366623 566367442 0.000000e+00 961.0
7 TraesCS1B01G148500 chr1A 94.574 258 13 1 3384 3641 37396569 37396313 1.280000e-106 398.0
8 TraesCS1B01G148500 chr1A 100.000 28 0 0 2861 2888 233922766 233922739 1.100000e-02 52.8
9 TraesCS1B01G148500 chr6B 94.118 799 40 5 1 792 544640734 544639936 0.000000e+00 1208.0
10 TraesCS1B01G148500 chr7B 89.480 808 70 9 1 794 74104667 74105473 0.000000e+00 1007.0
11 TraesCS1B01G148500 chr5B 89.493 809 67 9 1 792 529336793 529335986 0.000000e+00 1007.0
12 TraesCS1B01G148500 chr4A 89.578 806 62 9 1 794 620003301 620002506 0.000000e+00 1003.0
13 TraesCS1B01G148500 chr4A 96.124 258 9 1 3384 3641 610428503 610428759 2.730000e-113 420.0
14 TraesCS1B01G148500 chr4A 94.186 258 15 0 3384 3641 555158802 555158545 1.660000e-105 394.0
15 TraesCS1B01G148500 chr3B 89.120 818 60 11 1 797 52620419 52621228 0.000000e+00 990.0
16 TraesCS1B01G148500 chr3B 94.961 258 13 0 3384 3641 365739429 365739686 7.660000e-109 405.0
17 TraesCS1B01G148500 chr3A 88.589 815 70 17 1 794 143020373 143021185 0.000000e+00 968.0
18 TraesCS1B01G148500 chr3A 88.684 813 67 9 7 794 502521635 502520823 0.000000e+00 968.0
19 TraesCS1B01G148500 chr4B 96.899 258 8 0 3384 3641 333372417 333372160 3.510000e-117 433.0
20 TraesCS1B01G148500 chrUn 96.124 258 10 0 3384 3641 114953319 114953062 7.600000e-114 422.0
21 TraesCS1B01G148500 chr2A 94.186 258 14 1 3384 3641 132706233 132705977 5.960000e-105 392.0
22 TraesCS1B01G148500 chr5D 92.571 175 13 0 6169 6343 547415592 547415418 1.060000e-62 252.0
23 TraesCS1B01G148500 chr5D 90.960 177 13 2 6167 6343 406422133 406421960 1.060000e-57 235.0
24 TraesCS1B01G148500 chr7D 89.714 175 18 0 6169 6343 549635023 549635197 2.300000e-54 224.0
25 TraesCS1B01G148500 chr5A 92.357 157 10 1 6172 6328 25024150 25024304 8.280000e-54 222.0
26 TraesCS1B01G148500 chr6A 91.803 122 9 1 6222 6343 396280707 396280587 1.090000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G148500 chr1B 217559163 217565505 6342 False 11714 11714 100.0000 1 6343 1 chr1B.!!$F1 6342
1 TraesCS1B01G148500 chr1B 540152979 540153785 806 False 1144 1144 92.5930 1 792 1 chr1B.!!$F2 791
2 TraesCS1B01G148500 chr1D 159139804 159145240 5436 False 4033 5033 94.4475 836 6168 2 chr1D.!!$F1 5332
3 TraesCS1B01G148500 chr1A 233920894 233925879 4985 False 3744 4926 93.8325 926 6168 2 chr1A.!!$F2 5242
4 TraesCS1B01G148500 chr1A 566366623 566367442 819 False 961 961 88.2930 1 796 1 chr1A.!!$F1 795
5 TraesCS1B01G148500 chr6B 544639936 544640734 798 True 1208 1208 94.1180 1 792 1 chr6B.!!$R1 791
6 TraesCS1B01G148500 chr7B 74104667 74105473 806 False 1007 1007 89.4800 1 794 1 chr7B.!!$F1 793
7 TraesCS1B01G148500 chr5B 529335986 529336793 807 True 1007 1007 89.4930 1 792 1 chr5B.!!$R1 791
8 TraesCS1B01G148500 chr4A 620002506 620003301 795 True 1003 1003 89.5780 1 794 1 chr4A.!!$R2 793
9 TraesCS1B01G148500 chr3B 52620419 52621228 809 False 990 990 89.1200 1 797 1 chr3B.!!$F1 796
10 TraesCS1B01G148500 chr3A 143020373 143021185 812 False 968 968 88.5890 1 794 1 chr3A.!!$F1 793
11 TraesCS1B01G148500 chr3A 502520823 502521635 812 True 968 968 88.6840 7 794 1 chr3A.!!$R1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 938 0.107459 AAAGAGGCCCTTCGATGCTC 60.107 55.000 0.00 0.0 33.02 4.26 F
2051 2144 0.031178 CACCCTTCAGCTGTTTGCAC 59.969 55.000 14.67 0.0 45.94 4.57 F
2878 2973 2.158726 TCCGTCCACATATAAAAGCCCC 60.159 50.000 0.00 0.0 0.00 5.80 F
3484 3643 1.534595 GTCAGCAAAGCACTCCAGAAG 59.465 52.381 0.00 0.0 0.00 2.85 F
4635 4807 0.319040 GCTTCTGTGACTCGTGCTCA 60.319 55.000 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2601 2695 0.524180 GCGCTAGGCAGATGCAAAAC 60.524 55.000 7.19 0.0 44.36 2.43 R
3048 3198 2.109128 TCCCTTGGTCCACATAAAAGCA 59.891 45.455 0.00 0.0 0.00 3.91 R
4612 4784 1.570813 CACGAGTCACAGAAGCACAA 58.429 50.000 0.00 0.0 0.00 3.33 R
5230 5412 2.040545 TGAATCCTCGCCCACCTTTTAA 59.959 45.455 0.00 0.0 0.00 1.52 R
6290 6492 0.039437 TTGTTCGCTCGTGTCTCTCC 60.039 55.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 232 1.594293 CGTCGAACACCCTGCAAGT 60.594 57.895 0.00 0.00 0.00 3.16
784 833 3.408634 GCTAGTTTAGTGCCAGTTGGAA 58.591 45.455 1.45 0.00 37.39 3.53
797 846 3.488047 CCAGTTGGAAATGCTCTAATGCG 60.488 47.826 0.00 0.00 37.39 4.73
798 847 2.684881 AGTTGGAAATGCTCTAATGCGG 59.315 45.455 0.00 0.00 35.36 5.69
799 848 1.024271 TGGAAATGCTCTAATGCGGC 58.976 50.000 0.00 0.00 35.36 6.53
800 849 0.312102 GGAAATGCTCTAATGCGGCC 59.688 55.000 0.00 0.00 35.36 6.13
801 850 1.024271 GAAATGCTCTAATGCGGCCA 58.976 50.000 2.24 0.00 35.36 5.36
802 851 1.405105 GAAATGCTCTAATGCGGCCAA 59.595 47.619 2.24 0.00 35.36 4.52
803 852 0.740737 AATGCTCTAATGCGGCCAAC 59.259 50.000 2.24 0.00 35.36 3.77
816 865 4.657824 CCAACGCGACGGACCTGT 62.658 66.667 15.93 0.00 0.00 4.00
817 866 2.256158 CAACGCGACGGACCTGTA 59.744 61.111 15.93 0.00 0.00 2.74
818 867 1.800315 CAACGCGACGGACCTGTAG 60.800 63.158 15.93 0.00 0.00 2.74
819 868 2.263741 AACGCGACGGACCTGTAGT 61.264 57.895 15.93 0.00 0.00 2.73
820 869 2.202440 CGCGACGGACCTGTAGTG 60.202 66.667 0.00 0.00 0.00 2.74
821 870 2.683859 CGCGACGGACCTGTAGTGA 61.684 63.158 0.00 0.00 0.00 3.41
822 871 1.582968 GCGACGGACCTGTAGTGAA 59.417 57.895 0.00 0.00 0.00 3.18
823 872 0.172803 GCGACGGACCTGTAGTGAAT 59.827 55.000 0.00 0.00 0.00 2.57
824 873 1.403780 GCGACGGACCTGTAGTGAATT 60.404 52.381 0.00 0.00 0.00 2.17
825 874 2.929592 GCGACGGACCTGTAGTGAATTT 60.930 50.000 0.00 0.00 0.00 1.82
826 875 3.323243 CGACGGACCTGTAGTGAATTTT 58.677 45.455 0.00 0.00 0.00 1.82
827 876 3.744426 CGACGGACCTGTAGTGAATTTTT 59.256 43.478 0.00 0.00 0.00 1.94
828 877 4.143179 CGACGGACCTGTAGTGAATTTTTC 60.143 45.833 0.00 0.00 0.00 2.29
829 878 4.969484 ACGGACCTGTAGTGAATTTTTCT 58.031 39.130 0.00 0.00 0.00 2.52
830 879 4.995487 ACGGACCTGTAGTGAATTTTTCTC 59.005 41.667 0.00 0.00 0.00 2.87
831 880 4.994852 CGGACCTGTAGTGAATTTTTCTCA 59.005 41.667 0.00 0.00 0.00 3.27
832 881 5.468746 CGGACCTGTAGTGAATTTTTCTCAA 59.531 40.000 0.00 0.00 0.00 3.02
833 882 6.149474 CGGACCTGTAGTGAATTTTTCTCAAT 59.851 38.462 0.00 0.00 0.00 2.57
834 883 7.308589 CGGACCTGTAGTGAATTTTTCTCAATT 60.309 37.037 0.00 0.00 0.00 2.32
858 907 1.094785 ATTACACGCACATTCTGCCC 58.905 50.000 0.00 0.00 43.84 5.36
860 909 1.836999 TACACGCACATTCTGCCCCT 61.837 55.000 0.00 0.00 43.84 4.79
883 938 0.107459 AAAGAGGCCCTTCGATGCTC 60.107 55.000 0.00 0.00 33.02 4.26
885 940 3.798954 GAGGCCCTTCGATGCTCCG 62.799 68.421 0.00 0.00 0.00 4.63
887 942 4.838152 GCCCTTCGATGCTCCGCA 62.838 66.667 0.00 0.00 44.86 5.69
889 944 2.464459 CCCTTCGATGCTCCGCAAC 61.464 63.158 0.00 0.00 43.62 4.17
890 945 2.464459 CCTTCGATGCTCCGCAACC 61.464 63.158 0.00 0.00 43.62 3.77
891 946 2.435938 TTCGATGCTCCGCAACCC 60.436 61.111 0.00 0.00 43.62 4.11
895 950 3.011517 ATGCTCCGCAACCCCTCT 61.012 61.111 0.00 0.00 43.62 3.69
898 953 3.068881 CTCCGCAACCCCTCTTCA 58.931 61.111 0.00 0.00 0.00 3.02
899 954 1.376037 CTCCGCAACCCCTCTTCAC 60.376 63.158 0.00 0.00 0.00 3.18
900 955 2.359975 CCGCAACCCCTCTTCACC 60.360 66.667 0.00 0.00 0.00 4.02
902 957 2.035783 GCAACCCCTCTTCACCCC 59.964 66.667 0.00 0.00 0.00 4.95
941 998 1.073923 AGCCTTTCCCATCGAGTTTGT 59.926 47.619 0.00 0.00 0.00 2.83
981 1038 4.397730 TCGCCTAGCATTTGCAAGAAATTA 59.602 37.500 5.20 0.00 45.16 1.40
982 1039 5.101628 CGCCTAGCATTTGCAAGAAATTAA 58.898 37.500 5.20 0.00 45.16 1.40
983 1040 5.750067 CGCCTAGCATTTGCAAGAAATTAAT 59.250 36.000 5.20 0.00 45.16 1.40
984 1041 6.256321 CGCCTAGCATTTGCAAGAAATTAATT 59.744 34.615 5.20 0.00 45.16 1.40
985 1042 7.515684 CGCCTAGCATTTGCAAGAAATTAATTC 60.516 37.037 0.10 0.00 45.16 2.17
986 1043 7.254556 GCCTAGCATTTGCAAGAAATTAATTCC 60.255 37.037 0.10 0.00 45.16 3.01
987 1044 7.765360 CCTAGCATTTGCAAGAAATTAATTCCA 59.235 33.333 0.10 0.00 45.16 3.53
988 1045 7.605410 AGCATTTGCAAGAAATTAATTCCAG 57.395 32.000 0.10 0.00 45.16 3.86
989 1046 7.388437 AGCATTTGCAAGAAATTAATTCCAGA 58.612 30.769 0.10 0.00 45.16 3.86
1063 1141 1.538876 CTCCTCAACACCCCCTCCA 60.539 63.158 0.00 0.00 0.00 3.86
1134 1212 3.747852 TCCCCATCCATTTACTCCTTCT 58.252 45.455 0.00 0.00 0.00 2.85
1171 1249 6.462487 CCGCCTATATCAGTGGTTCTCTAAAA 60.462 42.308 0.00 0.00 0.00 1.52
1202 1280 3.256879 GGTCTGGCGATAGATCTGATCAA 59.743 47.826 19.12 0.00 39.76 2.57
1240 1318 2.554032 CAAAGTTGACCTCCGAAATGCT 59.446 45.455 0.00 0.00 0.00 3.79
1244 1322 1.860641 TGACCTCCGAAATGCTAGGA 58.139 50.000 0.00 0.00 33.16 2.94
1262 1340 3.414700 GCGTCTGGCCTGTGTTCG 61.415 66.667 3.32 9.23 34.80 3.95
1353 1431 6.431198 TCGTTAGGGTTTGAATTATCTTGC 57.569 37.500 0.00 0.00 0.00 4.01
1441 1520 8.680903 GGATTGTGTAATGTGATGATTCTTCTT 58.319 33.333 1.76 0.00 0.00 2.52
1475 1565 5.766150 TTTGTTGTGTCAAGGATACAAGG 57.234 39.130 8.50 0.00 42.47 3.61
1483 1573 4.019681 TGTCAAGGATACAAGGTTTCGGAT 60.020 41.667 0.00 0.00 41.41 4.18
1538 1628 4.637534 AGAGTCATGATTGTTTGGGATTCG 59.362 41.667 0.00 0.00 0.00 3.34
1623 1713 1.139256 TGCTTCCAACTGTGAACCGTA 59.861 47.619 0.00 0.00 0.00 4.02
1632 1722 3.267483 ACTGTGAACCGTACATTATGCC 58.733 45.455 0.00 0.00 0.00 4.40
1737 1827 4.486125 TGTGCTCTCATGCTACCAATTA 57.514 40.909 0.00 0.00 0.00 1.40
1777 1868 1.877443 GAAAAGTTGCCGGCTTAGTGA 59.123 47.619 29.70 1.94 0.00 3.41
1814 1905 2.561419 AGGCTGATGGCATTATGATTGC 59.439 45.455 0.00 0.00 44.01 3.56
1817 1908 4.502604 GGCTGATGGCATTATGATTGCTTT 60.503 41.667 0.00 0.00 44.01 3.51
2051 2144 0.031178 CACCCTTCAGCTGTTTGCAC 59.969 55.000 14.67 0.00 45.94 4.57
2061 2154 6.435430 TCAGCTGTTTGCACGATATTTATT 57.565 33.333 14.67 0.00 45.94 1.40
2211 2304 2.287009 GCTGTCGTATTTATTGGCCTGC 60.287 50.000 3.32 0.00 0.00 4.85
2585 2679 6.352516 AGATGTAGAAGGTCCAAATGATGTC 58.647 40.000 0.00 0.00 0.00 3.06
2601 2695 8.400947 CAAATGATGTCAGGTGTAAATTCCTAG 58.599 37.037 0.00 0.00 32.26 3.02
2658 2752 4.418392 GCACACCTGAAATCATGCTTAAG 58.582 43.478 0.00 0.00 0.00 1.85
2710 2804 4.847255 CACGCTTAAGTGCTTGGC 57.153 55.556 15.92 0.00 35.17 4.52
2748 2842 8.095937 AGTGCTTTTTCTAACCAGTAACATAC 57.904 34.615 0.00 0.00 0.00 2.39
2863 2958 6.145338 TGTAATGATTTACTCTCTCCGTCC 57.855 41.667 0.00 0.00 38.81 4.79
2864 2959 5.655090 TGTAATGATTTACTCTCTCCGTCCA 59.345 40.000 0.00 0.00 38.81 4.02
2865 2960 4.657436 ATGATTTACTCTCTCCGTCCAC 57.343 45.455 0.00 0.00 0.00 4.02
2866 2961 3.427573 TGATTTACTCTCTCCGTCCACA 58.572 45.455 0.00 0.00 0.00 4.17
2867 2962 4.023980 TGATTTACTCTCTCCGTCCACAT 58.976 43.478 0.00 0.00 0.00 3.21
2868 2963 5.198207 TGATTTACTCTCTCCGTCCACATA 58.802 41.667 0.00 0.00 0.00 2.29
2869 2964 5.833667 TGATTTACTCTCTCCGTCCACATAT 59.166 40.000 0.00 0.00 0.00 1.78
2870 2965 7.002276 TGATTTACTCTCTCCGTCCACATATA 58.998 38.462 0.00 0.00 0.00 0.86
2871 2966 7.504574 TGATTTACTCTCTCCGTCCACATATAA 59.495 37.037 0.00 0.00 0.00 0.98
2872 2967 7.649533 TTTACTCTCTCCGTCCACATATAAA 57.350 36.000 0.00 0.00 0.00 1.40
2873 2968 7.649533 TTACTCTCTCCGTCCACATATAAAA 57.350 36.000 0.00 0.00 0.00 1.52
2874 2969 6.150396 ACTCTCTCCGTCCACATATAAAAG 57.850 41.667 0.00 0.00 0.00 2.27
2875 2970 4.945246 TCTCTCCGTCCACATATAAAAGC 58.055 43.478 0.00 0.00 0.00 3.51
2876 2971 4.058817 CTCTCCGTCCACATATAAAAGCC 58.941 47.826 0.00 0.00 0.00 4.35
2877 2972 3.139077 CTCCGTCCACATATAAAAGCCC 58.861 50.000 0.00 0.00 0.00 5.19
2878 2973 2.158726 TCCGTCCACATATAAAAGCCCC 60.159 50.000 0.00 0.00 0.00 5.80
2879 2974 2.227194 CGTCCACATATAAAAGCCCCC 58.773 52.381 0.00 0.00 0.00 5.40
2895 2990 2.200373 CCCCCACAAAATTCGAGTCT 57.800 50.000 0.00 0.00 0.00 3.24
2896 2991 3.343941 CCCCCACAAAATTCGAGTCTA 57.656 47.619 0.00 0.00 0.00 2.59
2897 2992 3.886123 CCCCCACAAAATTCGAGTCTAT 58.114 45.455 0.00 0.00 0.00 1.98
2898 2993 3.877508 CCCCCACAAAATTCGAGTCTATC 59.122 47.826 0.00 0.00 0.00 2.08
2899 2994 4.384208 CCCCCACAAAATTCGAGTCTATCT 60.384 45.833 0.00 0.00 0.00 1.98
2900 2995 5.186198 CCCCACAAAATTCGAGTCTATCTT 58.814 41.667 0.00 0.00 0.00 2.40
2901 2996 5.065218 CCCCACAAAATTCGAGTCTATCTTG 59.935 44.000 0.00 0.00 0.00 3.02
2902 2997 5.874810 CCCACAAAATTCGAGTCTATCTTGA 59.125 40.000 0.00 0.00 35.00 3.02
2903 2998 6.183360 CCCACAAAATTCGAGTCTATCTTGAC 60.183 42.308 0.00 0.00 36.41 3.18
2904 2999 6.183360 CCACAAAATTCGAGTCTATCTTGACC 60.183 42.308 0.00 0.00 36.41 4.02
2905 3000 6.368791 CACAAAATTCGAGTCTATCTTGACCA 59.631 38.462 0.00 0.00 36.41 4.02
2959 3108 9.733556 TGTGACACTAAAATTCTACCATTGTAT 57.266 29.630 7.20 0.00 0.00 2.29
3048 3198 1.988107 TGAGCTCTGATTTTGAGGGGT 59.012 47.619 16.19 0.00 32.57 4.95
3097 3249 5.235186 GTGATTGAAAGACACGGGATATCTG 59.765 44.000 2.05 0.00 0.00 2.90
3099 3251 4.386867 TGAAAGACACGGGATATCTGTC 57.613 45.455 13.20 13.20 35.51 3.51
3109 3261 6.154706 ACACGGGATATCTGTCTAGTTTCTTT 59.845 38.462 2.05 0.00 31.34 2.52
3325 3478 7.985634 TTCTTAGTTCATGTTTTGTTCTTGC 57.014 32.000 0.00 0.00 0.00 4.01
3326 3479 7.094508 TCTTAGTTCATGTTTTGTTCTTGCA 57.905 32.000 0.00 0.00 0.00 4.08
3327 3480 7.542890 TCTTAGTTCATGTTTTGTTCTTGCAA 58.457 30.769 0.00 0.00 0.00 4.08
3328 3481 7.701924 TCTTAGTTCATGTTTTGTTCTTGCAAG 59.298 33.333 20.81 20.81 0.00 4.01
3330 3483 5.807011 AGTTCATGTTTTGTTCTTGCAAGAC 59.193 36.000 28.46 21.72 34.13 3.01
3331 3484 4.681744 TCATGTTTTGTTCTTGCAAGACC 58.318 39.130 28.46 22.32 33.98 3.85
3484 3643 1.534595 GTCAGCAAAGCACTCCAGAAG 59.465 52.381 0.00 0.00 0.00 2.85
3761 3920 6.682863 GCTAATTGCAGTTAGTTATGTGAACG 59.317 38.462 24.66 2.42 42.31 3.95
3783 3942 9.673454 GAACGTGTATTTTAGTTGGAGAATTTT 57.327 29.630 0.00 0.00 0.00 1.82
3829 3991 3.424703 ACATTACAACAGAGCATGCCTT 58.575 40.909 15.66 0.00 0.00 4.35
3949 4111 4.155462 CAGCTCTCACATAAGCATTGTTGT 59.845 41.667 0.00 0.00 41.06 3.32
4115 4277 8.382003 GCATTAGCATTTCAAGTAGTTTACAC 57.618 34.615 0.00 0.00 41.58 2.90
4119 4281 9.991906 TTAGCATTTCAAGTAGTTTACACTAGT 57.008 29.630 0.00 0.00 40.41 2.57
4363 4526 4.412796 TCTCTGCCTTGTATCATTGGAG 57.587 45.455 0.00 0.00 0.00 3.86
4400 4563 3.370840 TCTGGGATCAATGGAAGGTTG 57.629 47.619 0.00 0.00 0.00 3.77
4408 4571 5.066505 GGATCAATGGAAGGTTGATGTGTAC 59.933 44.000 6.12 0.00 44.10 2.90
4410 4573 5.380900 TCAATGGAAGGTTGATGTGTACAA 58.619 37.500 0.00 0.00 31.07 2.41
4414 4586 4.003648 GGAAGGTTGATGTGTACAAGAGG 58.996 47.826 0.00 0.00 0.00 3.69
4417 4589 4.164981 AGGTTGATGTGTACAAGAGGGTA 58.835 43.478 0.00 0.00 0.00 3.69
4606 4778 7.331934 GCTCGTTCTTGAGGCATATATGAATTA 59.668 37.037 17.10 0.00 36.47 1.40
4607 4779 9.376075 CTCGTTCTTGAGGCATATATGAATTAT 57.624 33.333 17.10 0.00 32.18 1.28
4608 4780 9.154847 TCGTTCTTGAGGCATATATGAATTATG 57.845 33.333 17.10 3.59 0.00 1.90
4609 4781 9.154847 CGTTCTTGAGGCATATATGAATTATGA 57.845 33.333 17.10 5.63 0.00 2.15
4635 4807 0.319040 GCTTCTGTGACTCGTGCTCA 60.319 55.000 0.00 0.00 0.00 4.26
4636 4808 1.869754 GCTTCTGTGACTCGTGCTCAA 60.870 52.381 0.00 0.00 0.00 3.02
4781 4953 7.176690 GGAGGTGAAACAAAATCAGAAATCCTA 59.823 37.037 0.00 0.00 39.98 2.94
4901 5073 2.749076 TGCTCCATCCAAATCAAGTTCG 59.251 45.455 0.00 0.00 0.00 3.95
4918 5090 7.518161 TCAAGTTCGAAGTTATTAGCATGTTG 58.482 34.615 17.53 2.60 0.00 3.33
5145 5317 4.101898 ACACTGACATACAACAGGTTACCA 59.898 41.667 3.51 0.00 38.30 3.25
5220 5402 5.173664 TCACTTAACACATCAGCATCAGAG 58.826 41.667 0.00 0.00 0.00 3.35
5230 5412 8.155510 ACACATCAGCATCAGAGAACATATATT 58.844 33.333 0.00 0.00 0.00 1.28
5369 5551 5.938322 TGAAACTTTACGCCATCATCTTTC 58.062 37.500 0.00 0.00 0.00 2.62
5380 5562 7.830739 ACGCCATCATCTTTCTTATTTTTCTT 58.169 30.769 0.00 0.00 0.00 2.52
5485 5667 3.800826 GGGACGGATATGCCTTGTT 57.199 52.632 0.00 0.00 0.00 2.83
5501 5683 1.890876 TGTTGCGCTATCAACCTTGT 58.109 45.000 9.73 0.00 44.15 3.16
5606 5792 9.937175 GTTCTAAGTTGCAATAATTAGCCTAAG 57.063 33.333 17.56 3.87 0.00 2.18
5639 5826 9.495754 GCTTTATGAATATGACTTGTCTTGTTC 57.504 33.333 14.53 14.53 0.00 3.18
5647 5844 3.561310 TGACTTGTCTTGTTCTGCATCAC 59.439 43.478 2.35 0.00 0.00 3.06
5661 5858 1.990799 CATCACGAGACCGCTTGTAA 58.009 50.000 0.00 0.00 36.60 2.41
5690 5887 2.017049 GAAGCAATAACACCCGAGCAT 58.983 47.619 0.00 0.00 0.00 3.79
5719 5917 4.331968 TCCACAAGTAGCAAAATGGGTAG 58.668 43.478 0.00 0.00 0.00 3.18
5835 6033 0.396435 TGTCGTGCCCATTGTTCTCT 59.604 50.000 0.00 0.00 0.00 3.10
5888 6086 5.542635 ACATACCTATAGAATTGCCTTCCGA 59.457 40.000 0.00 0.00 34.11 4.55
5921 6119 5.648178 TCAGCAATTTCAATAGTGTGCAT 57.352 34.783 6.32 0.00 34.44 3.96
6011 6212 3.909732 AGTGATTTTGGTCCTTTGGTCA 58.090 40.909 0.00 0.00 0.00 4.02
6090 6291 9.912634 TGGCTAAAATATTTCTGAAACTCAAAG 57.087 29.630 4.73 1.24 0.00 2.77
6131 6333 5.450412 GGCCAACGATCAATGATGTACATTT 60.450 40.000 10.30 0.00 45.60 2.32
6168 6370 8.143835 CCTTGAACTTATTTGGAATTGTGAACT 58.856 33.333 0.00 0.00 0.00 3.01
6169 6371 8.870160 TTGAACTTATTTGGAATTGTGAACTG 57.130 30.769 0.00 0.00 0.00 3.16
6170 6372 8.006298 TGAACTTATTTGGAATTGTGAACTGT 57.994 30.769 0.00 0.00 0.00 3.55
6171 6373 8.474025 TGAACTTATTTGGAATTGTGAACTGTT 58.526 29.630 0.00 0.00 0.00 3.16
6172 6374 9.959749 GAACTTATTTGGAATTGTGAACTGTTA 57.040 29.630 0.00 0.00 0.00 2.41
6173 6375 9.965824 AACTTATTTGGAATTGTGAACTGTTAG 57.034 29.630 0.00 0.00 0.00 2.34
6174 6376 9.349713 ACTTATTTGGAATTGTGAACTGTTAGA 57.650 29.630 0.00 0.00 0.00 2.10
6178 6380 7.639113 TTGGAATTGTGAACTGTTAGAAAGT 57.361 32.000 0.00 0.00 0.00 2.66
6179 6381 8.740123 TTGGAATTGTGAACTGTTAGAAAGTA 57.260 30.769 0.00 0.00 0.00 2.24
6180 6382 8.740123 TGGAATTGTGAACTGTTAGAAAGTAA 57.260 30.769 0.00 0.00 0.00 2.24
6181 6383 9.179909 TGGAATTGTGAACTGTTAGAAAGTAAA 57.820 29.630 0.00 0.00 0.00 2.01
6186 6388 9.834628 TTGTGAACTGTTAGAAAGTAAAACAAG 57.165 29.630 0.00 0.00 33.05 3.16
6187 6389 9.221933 TGTGAACTGTTAGAAAGTAAAACAAGA 57.778 29.630 0.00 0.00 33.05 3.02
6188 6390 9.704098 GTGAACTGTTAGAAAGTAAAACAAGAG 57.296 33.333 0.00 0.00 33.05 2.85
6189 6391 9.661563 TGAACTGTTAGAAAGTAAAACAAGAGA 57.338 29.630 0.00 0.00 33.05 3.10
6191 6393 9.886132 AACTGTTAGAAAGTAAAACAAGAGAGA 57.114 29.630 0.00 0.00 33.05 3.10
6192 6394 9.315525 ACTGTTAGAAAGTAAAACAAGAGAGAC 57.684 33.333 0.00 0.00 33.05 3.36
6193 6395 9.314321 CTGTTAGAAAGTAAAACAAGAGAGACA 57.686 33.333 0.00 0.00 33.05 3.41
6194 6396 9.661563 TGTTAGAAAGTAAAACAAGAGAGACAA 57.338 29.630 0.00 0.00 30.54 3.18
6197 6399 8.159344 AGAAAGTAAAACAAGAGAGACAATGG 57.841 34.615 0.00 0.00 0.00 3.16
6198 6400 7.993183 AGAAAGTAAAACAAGAGAGACAATGGA 59.007 33.333 0.00 0.00 0.00 3.41
6199 6401 7.497925 AAGTAAAACAAGAGAGACAATGGAC 57.502 36.000 0.00 0.00 0.00 4.02
6200 6402 6.591935 AGTAAAACAAGAGAGACAATGGACA 58.408 36.000 0.00 0.00 0.00 4.02
6201 6403 6.708054 AGTAAAACAAGAGAGACAATGGACAG 59.292 38.462 0.00 0.00 0.00 3.51
6202 6404 4.963318 AACAAGAGAGACAATGGACAGA 57.037 40.909 0.00 0.00 0.00 3.41
6203 6405 4.533919 ACAAGAGAGACAATGGACAGAG 57.466 45.455 0.00 0.00 0.00 3.35
6204 6406 4.155709 ACAAGAGAGACAATGGACAGAGA 58.844 43.478 0.00 0.00 0.00 3.10
6205 6407 4.776837 ACAAGAGAGACAATGGACAGAGAT 59.223 41.667 0.00 0.00 0.00 2.75
6206 6408 5.110598 CAAGAGAGACAATGGACAGAGATG 58.889 45.833 0.00 0.00 0.00 2.90
6207 6409 4.352009 AGAGAGACAATGGACAGAGATGT 58.648 43.478 0.00 0.00 0.00 3.06
6208 6410 5.514169 AGAGAGACAATGGACAGAGATGTA 58.486 41.667 0.00 0.00 0.00 2.29
6209 6411 5.954752 AGAGAGACAATGGACAGAGATGTAA 59.045 40.000 0.00 0.00 0.00 2.41
6210 6412 6.438741 AGAGAGACAATGGACAGAGATGTAAA 59.561 38.462 0.00 0.00 0.00 2.01
6211 6413 6.638610 AGAGACAATGGACAGAGATGTAAAG 58.361 40.000 0.00 0.00 0.00 1.85
6212 6414 6.212388 AGAGACAATGGACAGAGATGTAAAGT 59.788 38.462 0.00 0.00 0.00 2.66
6213 6415 6.169094 AGACAATGGACAGAGATGTAAAGTG 58.831 40.000 0.00 0.00 0.00 3.16
6214 6416 6.014242 AGACAATGGACAGAGATGTAAAGTGA 60.014 38.462 0.00 0.00 0.00 3.41
6215 6417 6.533730 ACAATGGACAGAGATGTAAAGTGAA 58.466 36.000 0.00 0.00 0.00 3.18
6216 6418 6.652481 ACAATGGACAGAGATGTAAAGTGAAG 59.348 38.462 0.00 0.00 0.00 3.02
6217 6419 5.152623 TGGACAGAGATGTAAAGTGAAGG 57.847 43.478 0.00 0.00 0.00 3.46
6218 6420 4.020218 TGGACAGAGATGTAAAGTGAAGGG 60.020 45.833 0.00 0.00 0.00 3.95
6219 6421 4.223032 GGACAGAGATGTAAAGTGAAGGGA 59.777 45.833 0.00 0.00 0.00 4.20
6220 6422 5.104735 GGACAGAGATGTAAAGTGAAGGGAT 60.105 44.000 0.00 0.00 0.00 3.85
6221 6423 5.738909 ACAGAGATGTAAAGTGAAGGGATG 58.261 41.667 0.00 0.00 0.00 3.51
6222 6424 5.249393 ACAGAGATGTAAAGTGAAGGGATGT 59.751 40.000 0.00 0.00 0.00 3.06
6223 6425 5.814705 CAGAGATGTAAAGTGAAGGGATGTC 59.185 44.000 0.00 0.00 0.00 3.06
6224 6426 5.723887 AGAGATGTAAAGTGAAGGGATGTCT 59.276 40.000 0.00 0.00 0.00 3.41
6225 6427 6.214412 AGAGATGTAAAGTGAAGGGATGTCTT 59.786 38.462 0.00 0.00 0.00 3.01
6226 6428 6.784031 AGATGTAAAGTGAAGGGATGTCTTT 58.216 36.000 0.00 0.00 33.76 2.52
6227 6429 7.918076 AGATGTAAAGTGAAGGGATGTCTTTA 58.082 34.615 0.00 0.00 32.01 1.85
6228 6430 8.552296 AGATGTAAAGTGAAGGGATGTCTTTAT 58.448 33.333 0.00 0.00 34.60 1.40
6229 6431 9.178758 GATGTAAAGTGAAGGGATGTCTTTATT 57.821 33.333 0.00 0.00 34.60 1.40
6230 6432 8.335532 TGTAAAGTGAAGGGATGTCTTTATTG 57.664 34.615 0.00 0.00 34.60 1.90
6231 6433 8.160765 TGTAAAGTGAAGGGATGTCTTTATTGA 58.839 33.333 0.00 0.00 34.60 2.57
6232 6434 9.178758 GTAAAGTGAAGGGATGTCTTTATTGAT 57.821 33.333 0.00 0.00 34.60 2.57
6233 6435 7.636150 AAGTGAAGGGATGTCTTTATTGATG 57.364 36.000 0.00 0.00 0.00 3.07
6234 6436 6.962182 AGTGAAGGGATGTCTTTATTGATGA 58.038 36.000 0.00 0.00 0.00 2.92
6235 6437 7.580910 AGTGAAGGGATGTCTTTATTGATGAT 58.419 34.615 0.00 0.00 0.00 2.45
6236 6438 7.718753 AGTGAAGGGATGTCTTTATTGATGATC 59.281 37.037 0.00 0.00 0.00 2.92
6237 6439 6.707608 TGAAGGGATGTCTTTATTGATGATCG 59.292 38.462 0.00 0.00 0.00 3.69
6238 6440 6.425210 AGGGATGTCTTTATTGATGATCGA 57.575 37.500 0.00 0.00 0.00 3.59
6239 6441 6.462500 AGGGATGTCTTTATTGATGATCGAG 58.538 40.000 0.00 0.00 0.00 4.04
6240 6442 6.042552 AGGGATGTCTTTATTGATGATCGAGT 59.957 38.462 0.00 0.00 0.00 4.18
6241 6443 7.233553 AGGGATGTCTTTATTGATGATCGAGTA 59.766 37.037 0.00 0.00 0.00 2.59
6242 6444 7.329717 GGGATGTCTTTATTGATGATCGAGTAC 59.670 40.741 0.00 0.00 0.00 2.73
6243 6445 7.867909 GGATGTCTTTATTGATGATCGAGTACA 59.132 37.037 0.00 0.00 0.00 2.90
6244 6446 9.249457 GATGTCTTTATTGATGATCGAGTACAA 57.751 33.333 0.00 0.00 0.00 2.41
6245 6447 8.634475 TGTCTTTATTGATGATCGAGTACAAG 57.366 34.615 0.00 0.00 0.00 3.16
6246 6448 7.222805 TGTCTTTATTGATGATCGAGTACAAGC 59.777 37.037 0.00 0.00 0.00 4.01
6247 6449 7.222805 GTCTTTATTGATGATCGAGTACAAGCA 59.777 37.037 0.00 0.00 0.00 3.91
6248 6450 7.928167 TCTTTATTGATGATCGAGTACAAGCAT 59.072 33.333 0.00 0.00 0.00 3.79
6249 6451 9.196552 CTTTATTGATGATCGAGTACAAGCATA 57.803 33.333 0.00 0.00 0.00 3.14
6250 6452 9.710900 TTTATTGATGATCGAGTACAAGCATAT 57.289 29.630 0.00 0.00 0.00 1.78
6255 6457 8.131731 TGATGATCGAGTACAAGCATATATAGC 58.868 37.037 0.00 0.00 0.00 2.97
6256 6458 6.796426 TGATCGAGTACAAGCATATATAGCC 58.204 40.000 0.00 0.00 0.00 3.93
6257 6459 5.578005 TCGAGTACAAGCATATATAGCCC 57.422 43.478 0.00 0.00 0.00 5.19
6258 6460 4.401519 TCGAGTACAAGCATATATAGCCCC 59.598 45.833 0.00 0.00 0.00 5.80
6259 6461 4.683832 GAGTACAAGCATATATAGCCCCG 58.316 47.826 0.00 0.00 0.00 5.73
6260 6462 4.350245 AGTACAAGCATATATAGCCCCGA 58.650 43.478 0.00 0.00 0.00 5.14
6261 6463 3.895232 ACAAGCATATATAGCCCCGAG 57.105 47.619 4.24 0.00 0.00 4.63
6262 6464 2.501723 ACAAGCATATATAGCCCCGAGG 59.498 50.000 4.24 0.00 0.00 4.63
6281 6483 1.723870 GGATGCATCCAACTGACGC 59.276 57.895 35.93 9.27 46.38 5.19
6282 6484 1.349627 GATGCATCCAACTGACGCG 59.650 57.895 16.23 3.53 0.00 6.01
6283 6485 1.079197 ATGCATCCAACTGACGCGA 60.079 52.632 15.93 0.00 0.00 5.87
6284 6486 0.462581 ATGCATCCAACTGACGCGAT 60.463 50.000 15.93 0.00 0.00 4.58
6285 6487 1.349627 GCATCCAACTGACGCGATG 59.650 57.895 15.93 4.17 36.11 3.84
6286 6488 2.009108 CATCCAACTGACGCGATGG 58.991 57.895 15.93 12.90 0.00 3.51
6287 6489 0.740868 CATCCAACTGACGCGATGGT 60.741 55.000 15.93 4.79 34.50 3.55
6288 6490 0.460284 ATCCAACTGACGCGATGGTC 60.460 55.000 15.93 0.00 37.45 4.02
6289 6491 2.100631 CCAACTGACGCGATGGTCC 61.101 63.158 15.93 0.00 36.07 4.46
6290 6492 2.126071 AACTGACGCGATGGTCCG 60.126 61.111 15.93 0.00 36.07 4.79
6291 6493 3.642778 AACTGACGCGATGGTCCGG 62.643 63.158 15.93 0.00 36.07 5.14
6292 6494 3.822192 CTGACGCGATGGTCCGGA 61.822 66.667 15.93 0.00 36.07 5.14
6293 6495 3.758088 CTGACGCGATGGTCCGGAG 62.758 68.421 15.93 0.00 36.07 4.63
6294 6496 3.515286 GACGCGATGGTCCGGAGA 61.515 66.667 15.93 0.00 0.00 3.71
6295 6497 3.471244 GACGCGATGGTCCGGAGAG 62.471 68.421 15.93 0.00 0.00 3.20
6296 6498 3.209812 CGCGATGGTCCGGAGAGA 61.210 66.667 3.06 0.00 0.00 3.10
6297 6499 2.413765 GCGATGGTCCGGAGAGAC 59.586 66.667 3.06 0.00 35.95 3.36
6298 6500 2.415608 GCGATGGTCCGGAGAGACA 61.416 63.158 3.06 1.86 38.59 3.41
6299 6501 1.433879 CGATGGTCCGGAGAGACAC 59.566 63.158 3.06 0.00 38.59 3.67
6300 6502 1.433879 GATGGTCCGGAGAGACACG 59.566 63.158 3.06 0.00 38.59 4.49
6301 6503 1.001269 ATGGTCCGGAGAGACACGA 60.001 57.895 3.06 0.00 38.59 4.35
6302 6504 1.032657 ATGGTCCGGAGAGACACGAG 61.033 60.000 3.06 0.00 38.59 4.18
6303 6505 2.486042 GTCCGGAGAGACACGAGC 59.514 66.667 3.06 0.00 36.73 5.03
6304 6506 3.125573 TCCGGAGAGACACGAGCG 61.126 66.667 0.00 0.00 0.00 5.03
6305 6507 3.125573 CCGGAGAGACACGAGCGA 61.126 66.667 0.00 0.00 0.00 4.93
6306 6508 2.687805 CCGGAGAGACACGAGCGAA 61.688 63.158 0.00 0.00 0.00 4.70
6307 6509 1.512310 CGGAGAGACACGAGCGAAC 60.512 63.158 0.00 0.00 0.00 3.95
6308 6510 1.579932 GGAGAGACACGAGCGAACA 59.420 57.895 0.00 0.00 0.00 3.18
6309 6511 0.039437 GGAGAGACACGAGCGAACAA 60.039 55.000 0.00 0.00 0.00 2.83
6310 6512 1.402984 GGAGAGACACGAGCGAACAAT 60.403 52.381 0.00 0.00 0.00 2.71
6311 6513 1.914700 GAGAGACACGAGCGAACAATC 59.085 52.381 0.00 0.00 0.00 2.67
6321 6523 2.359792 CGAACAATCGTGTCCCTCG 58.640 57.895 0.00 0.00 44.06 4.63
6322 6524 0.388134 CGAACAATCGTGTCCCTCGT 60.388 55.000 0.00 0.00 44.06 4.18
6323 6525 1.135603 CGAACAATCGTGTCCCTCGTA 60.136 52.381 0.00 0.00 44.06 3.43
6324 6526 2.257034 GAACAATCGTGTCCCTCGTAC 58.743 52.381 0.00 0.00 36.80 3.67
6325 6527 1.250328 ACAATCGTGTCCCTCGTACA 58.750 50.000 0.00 0.00 29.49 2.90
6326 6528 1.822990 ACAATCGTGTCCCTCGTACAT 59.177 47.619 0.00 0.00 29.49 2.29
6327 6529 2.193447 CAATCGTGTCCCTCGTACATG 58.807 52.381 0.00 0.00 35.58 3.21
6328 6530 0.744874 ATCGTGTCCCTCGTACATGG 59.255 55.000 0.00 0.00 35.10 3.66
6329 6531 1.518572 CGTGTCCCTCGTACATGGC 60.519 63.158 0.00 0.00 31.53 4.40
6330 6532 1.518572 GTGTCCCTCGTACATGGCG 60.519 63.158 0.00 1.17 0.00 5.69
6331 6533 2.106332 GTCCCTCGTACATGGCGG 59.894 66.667 11.10 3.71 0.00 6.13
6332 6534 2.363276 TCCCTCGTACATGGCGGT 60.363 61.111 11.10 0.00 0.00 5.68
6333 6535 1.985662 TCCCTCGTACATGGCGGTT 60.986 57.895 11.10 0.00 0.00 4.44
6334 6536 0.683828 TCCCTCGTACATGGCGGTTA 60.684 55.000 11.10 0.00 0.00 2.85
6335 6537 0.391597 CCCTCGTACATGGCGGTTAT 59.608 55.000 11.10 0.00 0.00 1.89
6336 6538 1.202604 CCCTCGTACATGGCGGTTATT 60.203 52.381 11.10 0.00 0.00 1.40
6337 6539 1.864711 CCTCGTACATGGCGGTTATTG 59.135 52.381 11.10 0.00 0.00 1.90
6338 6540 2.482316 CCTCGTACATGGCGGTTATTGA 60.482 50.000 11.10 0.00 0.00 2.57
6339 6541 3.390135 CTCGTACATGGCGGTTATTGAT 58.610 45.455 11.10 0.00 0.00 2.57
6340 6542 4.552355 CTCGTACATGGCGGTTATTGATA 58.448 43.478 11.10 0.00 0.00 2.15
6341 6543 4.552355 TCGTACATGGCGGTTATTGATAG 58.448 43.478 11.10 0.00 0.00 2.08
6342 6544 4.038282 TCGTACATGGCGGTTATTGATAGT 59.962 41.667 11.10 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 222 1.704641 GGGAAAGAAACTTGCAGGGT 58.295 50.000 0.00 0.00 0.00 4.34
224 232 0.321298 CGAAGGCGAGGGGAAAGAAA 60.321 55.000 0.00 0.00 40.82 2.52
369 383 4.891727 GCGGATGACCACGGCGAT 62.892 66.667 16.62 0.00 35.59 4.58
773 820 2.877097 TAGAGCATTTCCAACTGGCA 57.123 45.000 0.00 0.00 34.44 4.92
784 833 0.740737 GTTGGCCGCATTAGAGCATT 59.259 50.000 0.00 0.00 0.00 3.56
799 848 3.271706 TACAGGTCCGTCGCGTTGG 62.272 63.158 5.77 9.73 0.00 3.77
800 849 1.800315 CTACAGGTCCGTCGCGTTG 60.800 63.158 5.77 0.00 0.00 4.10
801 850 2.263741 ACTACAGGTCCGTCGCGTT 61.264 57.895 5.77 0.00 0.00 4.84
802 851 2.670934 ACTACAGGTCCGTCGCGT 60.671 61.111 5.77 0.00 0.00 6.01
803 852 2.191354 TTCACTACAGGTCCGTCGCG 62.191 60.000 0.00 0.00 0.00 5.87
804 853 0.172803 ATTCACTACAGGTCCGTCGC 59.827 55.000 0.00 0.00 0.00 5.19
805 854 2.649331 AATTCACTACAGGTCCGTCG 57.351 50.000 0.00 0.00 0.00 5.12
806 855 4.995487 AGAAAAATTCACTACAGGTCCGTC 59.005 41.667 0.00 0.00 0.00 4.79
807 856 4.969484 AGAAAAATTCACTACAGGTCCGT 58.031 39.130 0.00 0.00 0.00 4.69
808 857 4.994852 TGAGAAAAATTCACTACAGGTCCG 59.005 41.667 0.00 0.00 0.00 4.79
809 858 6.877611 TTGAGAAAAATTCACTACAGGTCC 57.122 37.500 0.00 0.00 0.00 4.46
810 859 9.750125 AAAATTGAGAAAAATTCACTACAGGTC 57.250 29.630 0.00 0.00 0.00 3.85
811 860 9.750125 GAAAATTGAGAAAAATTCACTACAGGT 57.250 29.630 0.00 0.00 0.00 4.00
812 861 9.971922 AGAAAATTGAGAAAAATTCACTACAGG 57.028 29.630 0.00 0.00 0.00 4.00
822 871 9.906660 TGCGTGTAATAGAAAATTGAGAAAAAT 57.093 25.926 0.00 0.00 0.00 1.82
823 872 9.176181 GTGCGTGTAATAGAAAATTGAGAAAAA 57.824 29.630 0.00 0.00 0.00 1.94
824 873 8.346300 TGTGCGTGTAATAGAAAATTGAGAAAA 58.654 29.630 0.00 0.00 0.00 2.29
825 874 7.866729 TGTGCGTGTAATAGAAAATTGAGAAA 58.133 30.769 0.00 0.00 0.00 2.52
826 875 7.428282 TGTGCGTGTAATAGAAAATTGAGAA 57.572 32.000 0.00 0.00 0.00 2.87
827 876 7.609760 ATGTGCGTGTAATAGAAAATTGAGA 57.390 32.000 0.00 0.00 0.00 3.27
828 877 8.177663 AGAATGTGCGTGTAATAGAAAATTGAG 58.822 33.333 0.00 0.00 0.00 3.02
829 878 7.962373 CAGAATGTGCGTGTAATAGAAAATTGA 59.038 33.333 0.00 0.00 0.00 2.57
830 879 7.253420 GCAGAATGTGCGTGTAATAGAAAATTG 60.253 37.037 0.00 0.00 43.99 2.32
831 880 6.747280 GCAGAATGTGCGTGTAATAGAAAATT 59.253 34.615 0.00 0.00 43.99 1.82
832 881 6.258160 GCAGAATGTGCGTGTAATAGAAAAT 58.742 36.000 0.00 0.00 43.99 1.82
833 882 5.627172 GCAGAATGTGCGTGTAATAGAAAA 58.373 37.500 0.00 0.00 43.99 2.29
834 883 5.216566 GCAGAATGTGCGTGTAATAGAAA 57.783 39.130 0.00 0.00 43.99 2.52
858 907 3.067684 TCGAAGGGCCTCTTTAAAAGG 57.932 47.619 6.46 10.40 35.50 3.11
860 909 2.752903 GCATCGAAGGGCCTCTTTAAAA 59.247 45.455 6.46 0.00 35.50 1.52
883 938 2.359975 GGTGAAGAGGGGTTGCGG 60.360 66.667 0.00 0.00 0.00 5.69
885 940 2.035783 GGGGTGAAGAGGGGTTGC 59.964 66.667 0.00 0.00 0.00 4.17
886 941 2.763902 GGGGGTGAAGAGGGGTTG 59.236 66.667 0.00 0.00 0.00 3.77
915 972 3.068729 GATGGGAAAGGCTTGCGGC 62.069 63.158 0.00 0.00 40.90 6.53
918 975 0.678048 ACTCGATGGGAAAGGCTTGC 60.678 55.000 0.00 0.00 0.00 4.01
941 998 1.282248 CGAGTTCGCTTCGCCTCAAA 61.282 55.000 0.00 0.00 0.00 2.69
981 1038 1.153168 CGCCGGTGGATCTGGAATT 60.153 57.895 7.26 0.00 45.09 2.17
982 1039 1.410850 ATCGCCGGTGGATCTGGAAT 61.411 55.000 16.49 0.00 45.09 3.01
983 1040 2.063979 ATCGCCGGTGGATCTGGAA 61.064 57.895 16.49 0.00 45.09 3.53
984 1041 2.443952 ATCGCCGGTGGATCTGGA 60.444 61.111 16.49 0.00 45.09 3.86
985 1042 2.280389 CATCGCCGGTGGATCTGG 60.280 66.667 16.49 0.00 45.06 3.86
986 1043 2.280389 CCATCGCCGGTGGATCTG 60.280 66.667 11.98 7.88 39.12 2.90
987 1044 4.241555 GCCATCGCCGGTGGATCT 62.242 66.667 22.99 0.00 39.12 2.75
1104 1182 4.357918 AAATGGATGGGGATCTTACGAG 57.642 45.455 0.00 0.00 0.00 4.18
1134 1212 4.102681 TGATATAGGCGGAGGATAGATCGA 59.897 45.833 0.00 0.00 0.00 3.59
1171 1249 4.143333 CGCCAGACCGACCGGATT 62.143 66.667 16.07 0.00 38.96 3.01
1202 1280 6.093495 TCAACTTTGATTTGACGAAGAACACT 59.907 34.615 0.00 0.00 35.79 3.55
1240 1318 2.037367 ACAGGCCAGACGCTCCTA 59.963 61.111 5.01 0.00 37.74 2.94
1244 1322 2.031163 GAACACAGGCCAGACGCT 59.969 61.111 5.01 0.00 37.74 5.07
1353 1431 9.616634 CAGAATCCCATTTACAATATCATTTCG 57.383 33.333 0.00 0.00 0.00 3.46
1384 1463 2.617308 TCGTAAGCGTTCCTCAGATAGG 59.383 50.000 0.00 0.00 42.17 2.57
1475 1565 8.129211 CCATTACCTAAAGAAATGATCCGAAAC 58.871 37.037 0.00 0.00 33.38 2.78
1483 1573 6.353323 TCGCATCCATTACCTAAAGAAATGA 58.647 36.000 0.00 0.00 33.38 2.57
1737 1827 7.395489 ACTTTTCAGCAGAATATGAGAATTGGT 59.605 33.333 0.00 0.00 32.89 3.67
1777 1868 1.103398 GCCTTTGCATAGCACGGGAT 61.103 55.000 11.81 0.00 38.71 3.85
1817 1908 4.116747 ACAAATGGTCGTGAAAGCAAAA 57.883 36.364 0.00 0.00 0.00 2.44
1925 2018 5.983540 AGTGAAACCAAATTAACAAAGCCA 58.016 33.333 0.00 0.00 37.80 4.75
2021 2114 3.389002 AGCTGAAGGGTGCTTTGAATTTT 59.611 39.130 0.00 0.00 35.86 1.82
2036 2129 4.346734 AATATCGTGCAAACAGCTGAAG 57.653 40.909 23.35 10.52 45.94 3.02
2061 2154 8.334263 TGCAACATAGTCACATTCTCATTAAA 57.666 30.769 0.00 0.00 0.00 1.52
2191 2284 2.942376 TGCAGGCCAATAAATACGACAG 59.058 45.455 5.01 0.00 0.00 3.51
2211 2304 6.968904 CGGTTCCTCACTGAAAATCATTAATG 59.031 38.462 9.29 9.29 32.74 1.90
2585 2679 6.325919 TGCAAAACTAGGAATTTACACCTG 57.674 37.500 0.00 0.00 37.68 4.00
2601 2695 0.524180 GCGCTAGGCAGATGCAAAAC 60.524 55.000 7.19 0.00 44.36 2.43
2710 2804 4.537433 GCACTCCTAGGGCAGGCG 62.537 72.222 9.46 0.00 45.95 5.52
2748 2842 4.261072 GCCATCATTTACTGCTCAGATGTG 60.261 45.833 3.60 0.00 32.98 3.21
2812 2907 9.817365 GTGCTAATAAATCATTACATGTGCTAG 57.183 33.333 9.11 0.00 0.00 3.42
2813 2908 9.336171 TGTGCTAATAAATCATTACATGTGCTA 57.664 29.630 9.11 0.00 0.00 3.49
2814 2909 8.224389 TGTGCTAATAAATCATTACATGTGCT 57.776 30.769 9.11 0.00 0.00 4.40
2815 2910 8.908678 CATGTGCTAATAAATCATTACATGTGC 58.091 33.333 9.11 0.00 36.85 4.57
2816 2911 9.955208 ACATGTGCTAATAAATCATTACATGTG 57.045 29.630 16.08 0.00 44.79 3.21
2832 2927 9.534565 GAGAGAGTAAATCATTACATGTGCTAA 57.465 33.333 9.11 0.00 43.20 3.09
2833 2928 8.144478 GGAGAGAGTAAATCATTACATGTGCTA 58.856 37.037 9.11 0.00 43.20 3.49
2834 2929 6.989169 GGAGAGAGTAAATCATTACATGTGCT 59.011 38.462 9.11 0.00 43.20 4.40
2835 2930 6.074088 CGGAGAGAGTAAATCATTACATGTGC 60.074 42.308 9.11 0.00 43.20 4.57
2836 2931 6.980978 ACGGAGAGAGTAAATCATTACATGTG 59.019 38.462 9.11 0.00 43.20 3.21
2837 2932 7.113658 ACGGAGAGAGTAAATCATTACATGT 57.886 36.000 2.69 2.69 43.20 3.21
2838 2933 6.642950 GGACGGAGAGAGTAAATCATTACATG 59.357 42.308 0.00 0.00 43.20 3.21
2839 2934 6.323996 TGGACGGAGAGAGTAAATCATTACAT 59.676 38.462 2.01 0.00 43.20 2.29
2840 2935 5.655090 TGGACGGAGAGAGTAAATCATTACA 59.345 40.000 2.01 0.00 43.20 2.41
2841 2936 5.978322 GTGGACGGAGAGAGTAAATCATTAC 59.022 44.000 0.00 0.00 41.45 1.89
2842 2937 5.655090 TGTGGACGGAGAGAGTAAATCATTA 59.345 40.000 0.00 0.00 0.00 1.90
2843 2938 4.466370 TGTGGACGGAGAGAGTAAATCATT 59.534 41.667 0.00 0.00 0.00 2.57
2844 2939 4.023980 TGTGGACGGAGAGAGTAAATCAT 58.976 43.478 0.00 0.00 0.00 2.45
2845 2940 3.427573 TGTGGACGGAGAGAGTAAATCA 58.572 45.455 0.00 0.00 0.00 2.57
2846 2941 4.657436 ATGTGGACGGAGAGAGTAAATC 57.343 45.455 0.00 0.00 0.00 2.17
2847 2942 7.834881 TTATATGTGGACGGAGAGAGTAAAT 57.165 36.000 0.00 0.00 0.00 1.40
2848 2943 7.649533 TTTATATGTGGACGGAGAGAGTAAA 57.350 36.000 0.00 0.00 0.00 2.01
2849 2944 7.649533 TTTTATATGTGGACGGAGAGAGTAA 57.350 36.000 0.00 0.00 0.00 2.24
2850 2945 6.238953 GCTTTTATATGTGGACGGAGAGAGTA 60.239 42.308 0.00 0.00 0.00 2.59
2851 2946 5.452077 GCTTTTATATGTGGACGGAGAGAGT 60.452 44.000 0.00 0.00 0.00 3.24
2852 2947 4.985409 GCTTTTATATGTGGACGGAGAGAG 59.015 45.833 0.00 0.00 0.00 3.20
2853 2948 4.202223 GGCTTTTATATGTGGACGGAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
2854 2949 4.058817 GGCTTTTATATGTGGACGGAGAG 58.941 47.826 0.00 0.00 0.00 3.20
2855 2950 3.181458 GGGCTTTTATATGTGGACGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
2856 2951 3.139077 GGGCTTTTATATGTGGACGGAG 58.861 50.000 0.00 0.00 0.00 4.63
2857 2952 2.158726 GGGGCTTTTATATGTGGACGGA 60.159 50.000 0.00 0.00 0.00 4.69
2858 2953 2.227194 GGGGCTTTTATATGTGGACGG 58.773 52.381 0.00 0.00 0.00 4.79
2859 2954 2.227194 GGGGGCTTTTATATGTGGACG 58.773 52.381 0.00 0.00 0.00 4.79
2876 2971 2.200373 AGACTCGAATTTTGTGGGGG 57.800 50.000 0.00 0.00 0.00 5.40
2877 2972 4.770795 AGATAGACTCGAATTTTGTGGGG 58.229 43.478 0.00 0.00 0.00 4.96
2878 2973 5.874810 TCAAGATAGACTCGAATTTTGTGGG 59.125 40.000 0.00 0.00 0.00 4.61
2879 2974 6.183360 GGTCAAGATAGACTCGAATTTTGTGG 60.183 42.308 0.00 0.00 38.57 4.17
2880 2975 6.368791 TGGTCAAGATAGACTCGAATTTTGTG 59.631 38.462 0.00 0.00 38.57 3.33
2881 2976 6.464222 TGGTCAAGATAGACTCGAATTTTGT 58.536 36.000 0.00 0.00 38.57 2.83
2882 2977 6.968131 TGGTCAAGATAGACTCGAATTTTG 57.032 37.500 0.00 0.00 38.57 2.44
2883 2978 7.331026 TCATGGTCAAGATAGACTCGAATTTT 58.669 34.615 0.00 0.00 38.57 1.82
2884 2979 6.878317 TCATGGTCAAGATAGACTCGAATTT 58.122 36.000 0.00 0.00 38.57 1.82
2885 2980 6.471233 TCATGGTCAAGATAGACTCGAATT 57.529 37.500 0.00 0.00 38.57 2.17
2886 2981 6.471233 TTCATGGTCAAGATAGACTCGAAT 57.529 37.500 0.00 0.00 38.57 3.34
2887 2982 5.914898 TTCATGGTCAAGATAGACTCGAA 57.085 39.130 0.00 0.00 38.57 3.71
2888 2983 6.096846 TGAATTCATGGTCAAGATAGACTCGA 59.903 38.462 3.38 0.00 38.57 4.04
2889 2984 6.276091 TGAATTCATGGTCAAGATAGACTCG 58.724 40.000 3.38 0.00 38.57 4.18
2890 2985 6.202570 GCTGAATTCATGGTCAAGATAGACTC 59.797 42.308 8.96 0.00 38.57 3.36
2891 2986 6.054295 GCTGAATTCATGGTCAAGATAGACT 58.946 40.000 8.96 0.00 38.57 3.24
2892 2987 6.054295 AGCTGAATTCATGGTCAAGATAGAC 58.946 40.000 8.96 0.00 37.80 2.59
2893 2988 6.244552 AGCTGAATTCATGGTCAAGATAGA 57.755 37.500 8.96 0.00 0.00 1.98
2894 2989 8.618702 AATAGCTGAATTCATGGTCAAGATAG 57.381 34.615 8.96 0.00 0.00 2.08
2896 2991 8.985315 TTAATAGCTGAATTCATGGTCAAGAT 57.015 30.769 8.96 0.00 0.00 2.40
2897 2992 8.806429 TTTAATAGCTGAATTCATGGTCAAGA 57.194 30.769 8.96 0.00 0.00 3.02
3048 3198 2.109128 TCCCTTGGTCCACATAAAAGCA 59.891 45.455 0.00 0.00 0.00 3.91
3133 3285 5.304686 AGAACTGTGGGTCACTGAATTAA 57.695 39.130 10.97 0.00 36.91 1.40
3324 3477 9.346725 CAAGAAAAAGAATAGTATTGGTCTTGC 57.653 33.333 0.00 0.00 33.95 4.01
3325 3478 9.846248 CCAAGAAAAAGAATAGTATTGGTCTTG 57.154 33.333 12.81 12.81 38.50 3.02
3326 3479 9.025041 CCCAAGAAAAAGAATAGTATTGGTCTT 57.975 33.333 0.00 0.00 35.30 3.01
3327 3480 8.170730 ACCCAAGAAAAAGAATAGTATTGGTCT 58.829 33.333 0.00 0.00 35.30 3.85
3328 3481 8.244113 CACCCAAGAAAAAGAATAGTATTGGTC 58.756 37.037 0.00 0.00 35.30 4.02
3330 3483 7.178451 ACCACCCAAGAAAAAGAATAGTATTGG 59.822 37.037 0.00 0.00 36.53 3.16
3331 3484 8.122472 ACCACCCAAGAAAAAGAATAGTATTG 57.878 34.615 0.00 0.00 0.00 1.90
3484 3643 6.817765 TGAACCAAATTACCAGAAGTCATC 57.182 37.500 0.00 0.00 0.00 2.92
3711 3870 7.306574 GCAAATGTATAGAAATTAAAAGCCCGC 60.307 37.037 0.00 0.00 0.00 6.13
3750 3909 8.497554 TCCAACTAAAATACACGTTCACATAAC 58.502 33.333 0.00 0.00 0.00 1.89
3829 3991 9.077885 ACTGCAGAAAAGAAAATACTTGGATAA 57.922 29.630 23.35 0.00 0.00 1.75
3949 4111 7.270757 ACAATGCTTATGTGTGTGACTAAAA 57.729 32.000 0.00 0.00 0.00 1.52
4363 4526 3.841255 CCCAGAATTAGATACTCCCTCCC 59.159 52.174 0.00 0.00 0.00 4.30
4400 4563 8.665685 CAGTAAATTTACCCTCTTGTACACATC 58.334 37.037 21.92 0.00 34.19 3.06
4408 4571 8.857694 TTAGAACCAGTAAATTTACCCTCTTG 57.142 34.615 21.92 14.05 34.19 3.02
4606 4778 4.083643 CGAGTCACAGAAGCACAAATTCAT 60.084 41.667 0.00 0.00 0.00 2.57
4607 4779 3.248363 CGAGTCACAGAAGCACAAATTCA 59.752 43.478 0.00 0.00 0.00 2.57
4608 4780 3.248602 ACGAGTCACAGAAGCACAAATTC 59.751 43.478 0.00 0.00 0.00 2.17
4609 4781 3.002656 CACGAGTCACAGAAGCACAAATT 59.997 43.478 0.00 0.00 0.00 1.82
4610 4782 2.545526 CACGAGTCACAGAAGCACAAAT 59.454 45.455 0.00 0.00 0.00 2.32
4611 4783 1.933181 CACGAGTCACAGAAGCACAAA 59.067 47.619 0.00 0.00 0.00 2.83
4612 4784 1.570813 CACGAGTCACAGAAGCACAA 58.429 50.000 0.00 0.00 0.00 3.33
4621 4793 5.940192 AATTTAATTGAGCACGAGTCACA 57.060 34.783 0.00 0.00 0.00 3.58
4793 4965 6.177610 ACTTACACAAGAAAACTGGAACTCA 58.822 36.000 0.00 0.00 35.60 3.41
4901 5073 7.065803 TGCTTAGACCAACATGCTAATAACTTC 59.934 37.037 0.00 0.00 0.00 3.01
4918 5090 5.008118 GTGCTATCCAAGAAATGCTTAGACC 59.992 44.000 0.00 0.00 34.31 3.85
5145 5317 7.833786 TGCATTGAAAATCTGAAAGCTAGAAT 58.166 30.769 0.00 0.00 0.00 2.40
5220 5402 7.266922 TCGCCCACCTTTTAAATATATGTTC 57.733 36.000 0.00 0.00 0.00 3.18
5230 5412 2.040545 TGAATCCTCGCCCACCTTTTAA 59.959 45.455 0.00 0.00 0.00 1.52
5369 5551 7.661027 TGGCCTTCATTGGAAAAGAAAAATAAG 59.339 33.333 3.32 0.00 32.68 1.73
5406 5588 4.588528 AGGAGAATGCAAAAGGCTGTTTTA 59.411 37.500 0.00 0.00 45.15 1.52
5485 5667 1.463056 CGAAACAAGGTTGATAGCGCA 59.537 47.619 11.47 0.00 0.00 6.09
5501 5683 5.223382 TGCTGAACTTTGAACAAAACGAAA 58.777 33.333 0.00 0.00 0.00 3.46
5563 5745 4.348863 AGAACAAAGATCTGCTCACAGT 57.651 40.909 0.00 0.00 44.77 3.55
5565 5747 5.858381 ACTTAGAACAAAGATCTGCTCACA 58.142 37.500 0.00 0.00 0.00 3.58
5606 5792 5.625150 AGTCATATTCATAAAGCACCTCCC 58.375 41.667 0.00 0.00 0.00 4.30
5619 5805 5.997129 TGCAGAACAAGACAAGTCATATTCA 59.003 36.000 2.72 0.00 0.00 2.57
5639 5826 1.446792 AAGCGGTCTCGTGATGCAG 60.447 57.895 14.38 0.00 38.89 4.41
5647 5844 2.561733 TCAGATTACAAGCGGTCTCG 57.438 50.000 0.00 0.00 39.81 4.04
5661 5858 5.163622 CGGGTGTTATTGCTTCATTTCAGAT 60.164 40.000 0.00 0.00 0.00 2.90
5695 5892 4.929479 ACCCATTTTGCTACTTGTGGATA 58.071 39.130 0.00 0.00 0.00 2.59
5743 5941 6.815089 TGCTACTTTGTGGATCAAACAAAAT 58.185 32.000 20.16 15.60 44.52 1.82
5814 6012 1.606668 GAGAACAATGGGCACGACAAA 59.393 47.619 0.00 0.00 0.00 2.83
5815 6013 1.202758 AGAGAACAATGGGCACGACAA 60.203 47.619 0.00 0.00 0.00 3.18
5860 6058 9.740710 GGAAGGCAATTCTATAGGTATGTATTT 57.259 33.333 0.00 0.00 38.07 1.40
5861 6059 8.041323 CGGAAGGCAATTCTATAGGTATGTATT 58.959 37.037 0.00 0.00 38.07 1.89
5862 6060 7.399191 TCGGAAGGCAATTCTATAGGTATGTAT 59.601 37.037 0.00 0.00 38.07 2.29
5863 6061 6.722590 TCGGAAGGCAATTCTATAGGTATGTA 59.277 38.462 0.00 0.00 38.07 2.29
5875 6073 7.706179 TGAAATATTTTGATCGGAAGGCAATTC 59.294 33.333 1.43 0.00 37.17 2.17
5885 6083 8.410030 TGAAATTGCTGAAATATTTTGATCGG 57.590 30.769 1.43 0.00 0.00 4.18
5961 6159 5.550232 TGATCGAGATCAAACCAAACATG 57.450 39.130 12.84 0.00 44.14 3.21
6090 6291 2.263540 CAACATGGCAAGGCAGGC 59.736 61.111 8.22 0.00 0.00 4.85
6131 6333 3.297134 AAGTTCAAGGCAGGTTCTGAA 57.703 42.857 0.00 0.00 32.44 3.02
6168 6370 9.661563 TTGTCTCTCTTGTTTTACTTTCTAACA 57.338 29.630 0.00 0.00 0.00 2.41
6171 6373 9.273016 CCATTGTCTCTCTTGTTTTACTTTCTA 57.727 33.333 0.00 0.00 0.00 2.10
6172 6374 7.993183 TCCATTGTCTCTCTTGTTTTACTTTCT 59.007 33.333 0.00 0.00 0.00 2.52
6173 6375 8.070769 GTCCATTGTCTCTCTTGTTTTACTTTC 58.929 37.037 0.00 0.00 0.00 2.62
6174 6376 7.556275 TGTCCATTGTCTCTCTTGTTTTACTTT 59.444 33.333 0.00 0.00 0.00 2.66
6175 6377 7.054124 TGTCCATTGTCTCTCTTGTTTTACTT 58.946 34.615 0.00 0.00 0.00 2.24
6176 6378 6.591935 TGTCCATTGTCTCTCTTGTTTTACT 58.408 36.000 0.00 0.00 0.00 2.24
6177 6379 6.706270 TCTGTCCATTGTCTCTCTTGTTTTAC 59.294 38.462 0.00 0.00 0.00 2.01
6178 6380 6.826668 TCTGTCCATTGTCTCTCTTGTTTTA 58.173 36.000 0.00 0.00 0.00 1.52
6179 6381 5.684704 TCTGTCCATTGTCTCTCTTGTTTT 58.315 37.500 0.00 0.00 0.00 2.43
6180 6382 5.070981 TCTCTGTCCATTGTCTCTCTTGTTT 59.929 40.000 0.00 0.00 0.00 2.83
6181 6383 4.590647 TCTCTGTCCATTGTCTCTCTTGTT 59.409 41.667 0.00 0.00 0.00 2.83
6182 6384 4.155709 TCTCTGTCCATTGTCTCTCTTGT 58.844 43.478 0.00 0.00 0.00 3.16
6183 6385 4.797800 TCTCTGTCCATTGTCTCTCTTG 57.202 45.455 0.00 0.00 0.00 3.02
6184 6386 4.776837 ACATCTCTGTCCATTGTCTCTCTT 59.223 41.667 0.00 0.00 0.00 2.85
6185 6387 4.352009 ACATCTCTGTCCATTGTCTCTCT 58.648 43.478 0.00 0.00 0.00 3.10
6186 6388 4.734398 ACATCTCTGTCCATTGTCTCTC 57.266 45.455 0.00 0.00 0.00 3.20
6187 6389 6.212388 ACTTTACATCTCTGTCCATTGTCTCT 59.788 38.462 0.00 0.00 36.79 3.10
6188 6390 6.312426 CACTTTACATCTCTGTCCATTGTCTC 59.688 42.308 0.00 0.00 36.79 3.36
6189 6391 6.014242 TCACTTTACATCTCTGTCCATTGTCT 60.014 38.462 0.00 0.00 36.79 3.41
6190 6392 6.166279 TCACTTTACATCTCTGTCCATTGTC 58.834 40.000 0.00 0.00 36.79 3.18
6191 6393 6.114187 TCACTTTACATCTCTGTCCATTGT 57.886 37.500 0.00 0.00 36.79 2.71
6192 6394 6.093219 CCTTCACTTTACATCTCTGTCCATTG 59.907 42.308 0.00 0.00 36.79 2.82
6193 6395 6.176183 CCTTCACTTTACATCTCTGTCCATT 58.824 40.000 0.00 0.00 36.79 3.16
6194 6396 5.338708 CCCTTCACTTTACATCTCTGTCCAT 60.339 44.000 0.00 0.00 36.79 3.41
6195 6397 4.020218 CCCTTCACTTTACATCTCTGTCCA 60.020 45.833 0.00 0.00 36.79 4.02
6196 6398 4.223032 TCCCTTCACTTTACATCTCTGTCC 59.777 45.833 0.00 0.00 36.79 4.02
6197 6399 5.407407 TCCCTTCACTTTACATCTCTGTC 57.593 43.478 0.00 0.00 36.79 3.51
6198 6400 5.249393 ACATCCCTTCACTTTACATCTCTGT 59.751 40.000 0.00 0.00 39.49 3.41
6199 6401 5.738909 ACATCCCTTCACTTTACATCTCTG 58.261 41.667 0.00 0.00 0.00 3.35
6200 6402 5.723887 AGACATCCCTTCACTTTACATCTCT 59.276 40.000 0.00 0.00 0.00 3.10
6201 6403 5.983540 AGACATCCCTTCACTTTACATCTC 58.016 41.667 0.00 0.00 0.00 2.75
6202 6404 6.380079 AAGACATCCCTTCACTTTACATCT 57.620 37.500 0.00 0.00 0.00 2.90
6203 6405 8.738645 ATAAAGACATCCCTTCACTTTACATC 57.261 34.615 0.00 0.00 36.40 3.06
6204 6406 8.960591 CAATAAAGACATCCCTTCACTTTACAT 58.039 33.333 0.00 0.00 36.40 2.29
6205 6407 8.160765 TCAATAAAGACATCCCTTCACTTTACA 58.839 33.333 0.00 0.00 36.40 2.41
6206 6408 8.561738 TCAATAAAGACATCCCTTCACTTTAC 57.438 34.615 0.00 0.00 36.40 2.01
6207 6409 9.177608 CATCAATAAAGACATCCCTTCACTTTA 57.822 33.333 0.00 0.00 37.42 1.85
6208 6410 7.890127 TCATCAATAAAGACATCCCTTCACTTT 59.110 33.333 0.00 0.00 35.47 2.66
6209 6411 7.405292 TCATCAATAAAGACATCCCTTCACTT 58.595 34.615 0.00 0.00 0.00 3.16
6210 6412 6.962182 TCATCAATAAAGACATCCCTTCACT 58.038 36.000 0.00 0.00 0.00 3.41
6211 6413 7.307632 CGATCATCAATAAAGACATCCCTTCAC 60.308 40.741 0.00 0.00 0.00 3.18
6212 6414 6.707608 CGATCATCAATAAAGACATCCCTTCA 59.292 38.462 0.00 0.00 0.00 3.02
6213 6415 6.931281 TCGATCATCAATAAAGACATCCCTTC 59.069 38.462 0.00 0.00 0.00 3.46
6214 6416 6.830912 TCGATCATCAATAAAGACATCCCTT 58.169 36.000 0.00 0.00 0.00 3.95
6215 6417 6.042552 ACTCGATCATCAATAAAGACATCCCT 59.957 38.462 0.00 0.00 0.00 4.20
6216 6418 6.226787 ACTCGATCATCAATAAAGACATCCC 58.773 40.000 0.00 0.00 0.00 3.85
6217 6419 7.867909 TGTACTCGATCATCAATAAAGACATCC 59.132 37.037 0.00 0.00 0.00 3.51
6218 6420 8.803201 TGTACTCGATCATCAATAAAGACATC 57.197 34.615 0.00 0.00 0.00 3.06
6219 6421 9.254133 CTTGTACTCGATCATCAATAAAGACAT 57.746 33.333 0.00 0.00 0.00 3.06
6220 6422 7.222805 GCTTGTACTCGATCATCAATAAAGACA 59.777 37.037 0.00 0.00 0.00 3.41
6221 6423 7.222805 TGCTTGTACTCGATCATCAATAAAGAC 59.777 37.037 0.00 0.00 0.00 3.01
6222 6424 7.264947 TGCTTGTACTCGATCATCAATAAAGA 58.735 34.615 0.00 0.00 0.00 2.52
6223 6425 7.468922 TGCTTGTACTCGATCATCAATAAAG 57.531 36.000 0.00 0.00 0.00 1.85
6224 6426 9.710900 ATATGCTTGTACTCGATCATCAATAAA 57.289 29.630 0.00 0.00 0.00 1.40
6229 6431 8.131731 GCTATATATGCTTGTACTCGATCATCA 58.868 37.037 0.00 0.00 0.00 3.07
6230 6432 7.593273 GGCTATATATGCTTGTACTCGATCATC 59.407 40.741 0.00 0.00 0.00 2.92
6231 6433 7.429633 GGCTATATATGCTTGTACTCGATCAT 58.570 38.462 0.00 0.00 0.00 2.45
6232 6434 6.183360 GGGCTATATATGCTTGTACTCGATCA 60.183 42.308 0.00 0.00 0.00 2.92
6233 6435 6.210078 GGGCTATATATGCTTGTACTCGATC 58.790 44.000 0.00 0.00 0.00 3.69
6234 6436 5.069251 GGGGCTATATATGCTTGTACTCGAT 59.931 44.000 0.00 0.00 0.00 3.59
6235 6437 4.401519 GGGGCTATATATGCTTGTACTCGA 59.598 45.833 0.00 0.00 0.00 4.04
6236 6438 4.683832 GGGGCTATATATGCTTGTACTCG 58.316 47.826 0.00 0.00 0.00 4.18
6237 6439 4.401519 TCGGGGCTATATATGCTTGTACTC 59.598 45.833 0.00 0.00 0.00 2.59
6238 6440 4.350245 TCGGGGCTATATATGCTTGTACT 58.650 43.478 0.00 0.00 0.00 2.73
6239 6441 4.441634 CCTCGGGGCTATATATGCTTGTAC 60.442 50.000 0.00 0.00 0.00 2.90
6240 6442 3.704566 CCTCGGGGCTATATATGCTTGTA 59.295 47.826 0.00 0.00 0.00 2.41
6241 6443 2.501723 CCTCGGGGCTATATATGCTTGT 59.498 50.000 0.00 0.00 0.00 3.16
6242 6444 2.158900 CCCTCGGGGCTATATATGCTTG 60.159 54.545 0.00 0.00 35.35 4.01
6243 6445 2.119495 CCCTCGGGGCTATATATGCTT 58.881 52.381 0.00 0.00 35.35 3.91
6244 6446 1.794714 CCCTCGGGGCTATATATGCT 58.205 55.000 0.00 0.00 35.35 3.79
6256 6458 2.756042 TTGGATGCATCCCCTCGGG 61.756 63.158 36.97 0.00 46.59 5.14
6257 6459 1.526917 GTTGGATGCATCCCCTCGG 60.527 63.158 36.97 0.00 46.59 4.63
6258 6460 0.816825 CAGTTGGATGCATCCCCTCG 60.817 60.000 36.97 21.86 46.59 4.63
6259 6461 0.548031 TCAGTTGGATGCATCCCCTC 59.452 55.000 36.97 26.62 46.59 4.30
6260 6462 0.257039 GTCAGTTGGATGCATCCCCT 59.743 55.000 36.97 29.43 46.59 4.79
6261 6463 1.097547 CGTCAGTTGGATGCATCCCC 61.098 60.000 36.97 27.92 46.59 4.81
6262 6464 2.397751 CGTCAGTTGGATGCATCCC 58.602 57.895 36.97 24.88 46.59 3.85
6268 6470 0.740868 ACCATCGCGTCAGTTGGATG 60.741 55.000 5.77 0.00 35.52 3.51
6269 6471 0.460284 GACCATCGCGTCAGTTGGAT 60.460 55.000 5.77 0.00 35.52 3.41
6270 6472 1.080093 GACCATCGCGTCAGTTGGA 60.080 57.895 5.77 0.00 35.52 3.53
6271 6473 2.100631 GGACCATCGCGTCAGTTGG 61.101 63.158 5.77 9.41 37.10 3.77
6272 6474 2.444624 CGGACCATCGCGTCAGTTG 61.445 63.158 5.77 0.00 34.24 3.16
6273 6475 2.126071 CGGACCATCGCGTCAGTT 60.126 61.111 5.77 0.00 34.24 3.16
6274 6476 4.129737 CCGGACCATCGCGTCAGT 62.130 66.667 5.77 0.98 34.24 3.41
6275 6477 3.758088 CTCCGGACCATCGCGTCAG 62.758 68.421 5.77 0.00 34.24 3.51
6276 6478 3.822192 CTCCGGACCATCGCGTCA 61.822 66.667 5.77 0.00 34.24 4.35
6277 6479 3.471244 CTCTCCGGACCATCGCGTC 62.471 68.421 5.77 0.00 0.00 5.19
6278 6480 3.518998 CTCTCCGGACCATCGCGT 61.519 66.667 5.77 0.00 0.00 6.01
6279 6481 3.209812 TCTCTCCGGACCATCGCG 61.210 66.667 0.00 0.00 0.00 5.87
6280 6482 2.413765 GTCTCTCCGGACCATCGC 59.586 66.667 0.00 0.00 0.00 4.58
6281 6483 1.433879 GTGTCTCTCCGGACCATCG 59.566 63.158 0.00 0.00 35.54 3.84
6282 6484 1.030488 TCGTGTCTCTCCGGACCATC 61.030 60.000 0.00 0.00 35.54 3.51
6283 6485 1.001269 TCGTGTCTCTCCGGACCAT 60.001 57.895 0.00 0.00 35.54 3.55
6284 6486 1.674651 CTCGTGTCTCTCCGGACCA 60.675 63.158 0.00 0.00 35.54 4.02
6285 6487 3.053849 GCTCGTGTCTCTCCGGACC 62.054 68.421 0.00 0.00 35.54 4.46
6286 6488 2.486042 GCTCGTGTCTCTCCGGAC 59.514 66.667 0.00 0.00 36.81 4.79
6287 6489 3.125573 CGCTCGTGTCTCTCCGGA 61.126 66.667 2.93 2.93 0.00 5.14
6288 6490 2.687805 TTCGCTCGTGTCTCTCCGG 61.688 63.158 0.00 0.00 0.00 5.14
6289 6491 1.512310 GTTCGCTCGTGTCTCTCCG 60.512 63.158 0.00 0.00 0.00 4.63
6290 6492 0.039437 TTGTTCGCTCGTGTCTCTCC 60.039 55.000 0.00 0.00 0.00 3.71
6291 6493 1.914700 GATTGTTCGCTCGTGTCTCTC 59.085 52.381 0.00 0.00 0.00 3.20
6292 6494 1.729472 CGATTGTTCGCTCGTGTCTCT 60.729 52.381 0.00 0.00 38.75 3.10
6293 6495 0.635731 CGATTGTTCGCTCGTGTCTC 59.364 55.000 0.00 0.00 38.75 3.36
6294 6496 2.725644 CGATTGTTCGCTCGTGTCT 58.274 52.632 0.00 0.00 38.75 3.41
6312 6514 1.518572 CGCCATGTACGAGGGACAC 60.519 63.158 5.65 0.00 0.00 3.67
6313 6515 2.717044 CCGCCATGTACGAGGGACA 61.717 63.158 6.92 0.00 0.00 4.02
6314 6516 2.106332 CCGCCATGTACGAGGGAC 59.894 66.667 6.92 0.00 0.00 4.46
6315 6517 0.683828 TAACCGCCATGTACGAGGGA 60.684 55.000 6.92 0.00 0.00 4.20
6316 6518 0.391597 ATAACCGCCATGTACGAGGG 59.608 55.000 6.92 0.00 0.00 4.30
6317 6519 1.864711 CAATAACCGCCATGTACGAGG 59.135 52.381 6.92 0.00 0.00 4.63
6318 6520 2.816689 TCAATAACCGCCATGTACGAG 58.183 47.619 6.92 0.85 0.00 4.18
6319 6521 2.963548 TCAATAACCGCCATGTACGA 57.036 45.000 6.92 0.00 0.00 3.43
6320 6522 4.304110 ACTATCAATAACCGCCATGTACG 58.696 43.478 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.