Multiple sequence alignment - TraesCS1B01G148300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G148300 chr1B 100.000 2366 0 0 1 2366 216475040 216472675 0.000000e+00 4370.0
1 TraesCS1B01G148300 chr1B 89.759 2119 154 35 1 2067 353249548 353247441 0.000000e+00 2652.0
2 TraesCS1B01G148300 chr1B 89.914 2092 151 25 1 2067 292335044 292337100 0.000000e+00 2639.0
3 TraesCS1B01G148300 chr1B 89.823 2093 152 25 1 2067 292406493 292408550 0.000000e+00 2628.0
4 TraesCS1B01G148300 chr1B 89.041 2117 150 36 1 2067 237502246 237504330 0.000000e+00 2549.0
5 TraesCS1B01G148300 chr1B 93.937 1336 71 7 1 1334 473898299 473896972 0.000000e+00 2010.0
6 TraesCS1B01G148300 chr1B 92.089 1125 51 6 973 2067 216481900 216480784 0.000000e+00 1550.0
7 TraesCS1B01G148300 chr1B 85.868 1118 119 24 973 2067 292270286 292271387 0.000000e+00 1153.0
8 TraesCS1B01G148300 chr1B 92.208 77 5 1 2068 2143 110625211 110625287 8.940000e-20 108.0
9 TraesCS1B01G148300 chr5B 91.277 2098 117 17 1 2067 221866693 221868755 0.000000e+00 2800.0
10 TraesCS1B01G148300 chr5B 90.920 1608 113 13 8 1599 525589085 525590675 0.000000e+00 2130.0
11 TraesCS1B01G148300 chr5B 85.535 1113 131 18 973 2067 177714019 177712919 0.000000e+00 1136.0
12 TraesCS1B01G148300 chr5B 92.500 80 5 1 2068 2146 136051350 136051429 1.920000e-21 113.0
13 TraesCS1B01G148300 chr5B 91.250 80 6 1 2068 2146 403186207 403186286 8.940000e-20 108.0
14 TraesCS1B01G148300 chr2B 91.008 2113 124 28 1 2070 367672632 367670543 0.000000e+00 2789.0
15 TraesCS1B01G148300 chr2B 89.614 2099 153 25 1 2068 311855783 311853719 0.000000e+00 2608.0
16 TraesCS1B01G148300 chr2B 88.213 2121 182 41 1 2067 353290819 353292925 0.000000e+00 2470.0
17 TraesCS1B01G148300 chr2B 84.047 514 53 11 1313 1806 311885584 311885080 3.560000e-128 468.0
18 TraesCS1B01G148300 chr2B 81.385 462 40 18 1226 1644 367684758 367684300 3.770000e-88 335.0
19 TraesCS1B01G148300 chr7B 90.732 2104 142 29 1 2067 322409610 322407523 0.000000e+00 2756.0
20 TraesCS1B01G148300 chr7B 85.290 707 61 28 1399 2067 282078086 282077385 0.000000e+00 689.0
21 TraesCS1B01G148300 chr4B 89.764 2120 149 35 1 2067 248753166 248751062 0.000000e+00 2651.0
22 TraesCS1B01G148300 chr3B 89.429 2100 158 37 1 2067 66554826 66556894 0.000000e+00 2590.0
23 TraesCS1B01G148300 chr3B 89.915 1755 148 14 327 2067 186936833 186935094 0.000000e+00 2233.0
24 TraesCS1B01G148300 chr3B 87.397 968 71 23 1145 2067 147878785 147877824 0.000000e+00 1064.0
25 TraesCS1B01G148300 chr3B 91.684 493 36 3 1577 2067 66548608 66549097 0.000000e+00 678.0
26 TraesCS1B01G148300 chr6B 90.709 592 43 9 1480 2067 360376090 360376673 0.000000e+00 778.0
27 TraesCS1B01G148300 chr6B 88.314 599 55 5 1479 2067 345285514 345286107 0.000000e+00 704.0
28 TraesCS1B01G148300 chr6B 89.043 575 54 4 1495 2067 360383881 360384448 0.000000e+00 704.0
29 TraesCS1B01G148300 chr1D 95.973 298 12 0 2069 2366 148675138 148675435 3.540000e-133 484.0
30 TraesCS1B01G148300 chr1A 95.638 298 13 0 2069 2366 202088141 202088438 1.640000e-131 479.0
31 TraesCS1B01G148300 chr5D 93.750 80 4 1 2068 2146 342959248 342959327 4.130000e-23 119.0
32 TraesCS1B01G148300 chr5D 91.250 80 6 1 2068 2146 123089274 123089353 8.940000e-20 108.0
33 TraesCS1B01G148300 chr5A 92.500 80 5 1 2068 2146 444058383 444058462 1.920000e-21 113.0
34 TraesCS1B01G148300 chr3D 84.507 71 10 1 2071 2140 441155296 441155226 4.220000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G148300 chr1B 216472675 216475040 2365 True 4370 4370 100.000 1 2366 1 chr1B.!!$R1 2365
1 TraesCS1B01G148300 chr1B 353247441 353249548 2107 True 2652 2652 89.759 1 2067 1 chr1B.!!$R3 2066
2 TraesCS1B01G148300 chr1B 292335044 292337100 2056 False 2639 2639 89.914 1 2067 1 chr1B.!!$F4 2066
3 TraesCS1B01G148300 chr1B 292406493 292408550 2057 False 2628 2628 89.823 1 2067 1 chr1B.!!$F5 2066
4 TraesCS1B01G148300 chr1B 237502246 237504330 2084 False 2549 2549 89.041 1 2067 1 chr1B.!!$F2 2066
5 TraesCS1B01G148300 chr1B 473896972 473898299 1327 True 2010 2010 93.937 1 1334 1 chr1B.!!$R4 1333
6 TraesCS1B01G148300 chr1B 216480784 216481900 1116 True 1550 1550 92.089 973 2067 1 chr1B.!!$R2 1094
7 TraesCS1B01G148300 chr1B 292270286 292271387 1101 False 1153 1153 85.868 973 2067 1 chr1B.!!$F3 1094
8 TraesCS1B01G148300 chr5B 221866693 221868755 2062 False 2800 2800 91.277 1 2067 1 chr5B.!!$F2 2066
9 TraesCS1B01G148300 chr5B 525589085 525590675 1590 False 2130 2130 90.920 8 1599 1 chr5B.!!$F4 1591
10 TraesCS1B01G148300 chr5B 177712919 177714019 1100 True 1136 1136 85.535 973 2067 1 chr5B.!!$R1 1094
11 TraesCS1B01G148300 chr2B 367670543 367672632 2089 True 2789 2789 91.008 1 2070 1 chr2B.!!$R3 2069
12 TraesCS1B01G148300 chr2B 311853719 311855783 2064 True 2608 2608 89.614 1 2068 1 chr2B.!!$R1 2067
13 TraesCS1B01G148300 chr2B 353290819 353292925 2106 False 2470 2470 88.213 1 2067 1 chr2B.!!$F1 2066
14 TraesCS1B01G148300 chr2B 311885080 311885584 504 True 468 468 84.047 1313 1806 1 chr2B.!!$R2 493
15 TraesCS1B01G148300 chr7B 322407523 322409610 2087 True 2756 2756 90.732 1 2067 1 chr7B.!!$R2 2066
16 TraesCS1B01G148300 chr7B 282077385 282078086 701 True 689 689 85.290 1399 2067 1 chr7B.!!$R1 668
17 TraesCS1B01G148300 chr4B 248751062 248753166 2104 True 2651 2651 89.764 1 2067 1 chr4B.!!$R1 2066
18 TraesCS1B01G148300 chr3B 66554826 66556894 2068 False 2590 2590 89.429 1 2067 1 chr3B.!!$F2 2066
19 TraesCS1B01G148300 chr3B 186935094 186936833 1739 True 2233 2233 89.915 327 2067 1 chr3B.!!$R2 1740
20 TraesCS1B01G148300 chr3B 147877824 147878785 961 True 1064 1064 87.397 1145 2067 1 chr3B.!!$R1 922
21 TraesCS1B01G148300 chr6B 360376090 360376673 583 False 778 778 90.709 1480 2067 1 chr6B.!!$F2 587
22 TraesCS1B01G148300 chr6B 345285514 345286107 593 False 704 704 88.314 1479 2067 1 chr6B.!!$F1 588
23 TraesCS1B01G148300 chr6B 360383881 360384448 567 False 704 704 89.043 1495 2067 1 chr6B.!!$F3 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 484 0.618458 GAGTGCCTAACCCATCACCA 59.382 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2567 0.03309 AAACCGAGGACCGAACTGAC 59.967 55.0 0.0 0.0 41.76 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.094234 TGCTCTACATGTCGCAAAGCTA 60.094 45.455 0.00 0.00 0.00 3.32
171 174 3.868757 TGTTGTGGACCGATTCTCTAG 57.131 47.619 0.00 0.00 0.00 2.43
179 182 2.630580 GACCGATTCTCTAGGATGGCTT 59.369 50.000 0.00 0.00 0.00 4.35
318 325 7.829706 AGTTCTTGAGTTACTTTTGGAAGACTT 59.170 33.333 0.00 0.00 36.69 3.01
475 484 0.618458 GAGTGCCTAACCCATCACCA 59.382 55.000 0.00 0.00 0.00 4.17
825 837 0.741221 GACCCTTCAAGGTGCTAGCG 60.741 60.000 10.77 0.00 41.42 4.26
934 946 3.159213 ACCATGGTGATGAAGCTTTCA 57.841 42.857 18.99 0.00 45.01 2.69
1388 1507 2.004808 CTACAGCGAGCGGATGTCCA 62.005 60.000 4.99 0.00 42.83 4.02
1472 1592 1.604378 CAATTCCACTCCCGAGCCT 59.396 57.895 0.00 0.00 0.00 4.58
2071 2332 4.138487 GGTTCTACCCTACATCAGTTGG 57.862 50.000 0.00 0.00 39.90 3.77
2072 2333 3.532542 GTTCTACCCTACATCAGTTGGC 58.467 50.000 0.00 0.00 39.03 4.52
2073 2334 2.116238 TCTACCCTACATCAGTTGGCC 58.884 52.381 0.00 0.00 39.03 5.36
2074 2335 2.119495 CTACCCTACATCAGTTGGCCT 58.881 52.381 3.32 0.00 39.03 5.19
2075 2336 2.263895 ACCCTACATCAGTTGGCCTA 57.736 50.000 3.32 0.00 39.03 3.93
2076 2337 1.838077 ACCCTACATCAGTTGGCCTAC 59.162 52.381 9.54 9.54 39.03 3.18
2077 2338 2.119495 CCCTACATCAGTTGGCCTACT 58.881 52.381 14.58 14.58 39.03 2.57
2078 2339 3.305720 CCCTACATCAGTTGGCCTACTA 58.694 50.000 19.78 8.93 39.03 1.82
2079 2340 3.709653 CCCTACATCAGTTGGCCTACTAA 59.290 47.826 19.78 6.01 39.03 2.24
2080 2341 4.202264 CCCTACATCAGTTGGCCTACTAAG 60.202 50.000 19.78 14.01 39.03 2.18
2081 2342 4.649674 CCTACATCAGTTGGCCTACTAAGA 59.350 45.833 19.78 13.96 33.98 2.10
2082 2343 4.744795 ACATCAGTTGGCCTACTAAGAG 57.255 45.455 19.78 12.04 0.00 2.85
2083 2344 4.353777 ACATCAGTTGGCCTACTAAGAGA 58.646 43.478 19.78 12.90 0.00 3.10
2084 2345 4.160626 ACATCAGTTGGCCTACTAAGAGAC 59.839 45.833 19.78 0.00 0.00 3.36
2085 2346 3.774734 TCAGTTGGCCTACTAAGAGACA 58.225 45.455 19.78 0.00 0.00 3.41
2086 2347 4.157246 TCAGTTGGCCTACTAAGAGACAA 58.843 43.478 19.78 0.00 0.00 3.18
2087 2348 4.021368 TCAGTTGGCCTACTAAGAGACAAC 60.021 45.833 19.78 2.76 35.82 3.32
2088 2349 3.901844 AGTTGGCCTACTAAGAGACAACA 59.098 43.478 18.82 0.00 36.96 3.33
2089 2350 3.955650 TGGCCTACTAAGAGACAACAC 57.044 47.619 3.32 0.00 0.00 3.32
2090 2351 3.236047 TGGCCTACTAAGAGACAACACA 58.764 45.455 3.32 0.00 0.00 3.72
2091 2352 3.838317 TGGCCTACTAAGAGACAACACAT 59.162 43.478 3.32 0.00 0.00 3.21
2092 2353 4.081642 TGGCCTACTAAGAGACAACACATC 60.082 45.833 3.32 0.00 0.00 3.06
2093 2354 4.434520 GCCTACTAAGAGACAACACATCC 58.565 47.826 0.00 0.00 0.00 3.51
2094 2355 4.081642 GCCTACTAAGAGACAACACATCCA 60.082 45.833 0.00 0.00 0.00 3.41
2095 2356 5.568825 GCCTACTAAGAGACAACACATCCAA 60.569 44.000 0.00 0.00 0.00 3.53
2096 2357 5.869888 CCTACTAAGAGACAACACATCCAAC 59.130 44.000 0.00 0.00 0.00 3.77
2097 2358 5.290493 ACTAAGAGACAACACATCCAACA 57.710 39.130 0.00 0.00 0.00 3.33
2098 2359 5.680619 ACTAAGAGACAACACATCCAACAA 58.319 37.500 0.00 0.00 0.00 2.83
2099 2360 6.119536 ACTAAGAGACAACACATCCAACAAA 58.880 36.000 0.00 0.00 0.00 2.83
2100 2361 6.772716 ACTAAGAGACAACACATCCAACAAAT 59.227 34.615 0.00 0.00 0.00 2.32
2101 2362 5.443185 AGAGACAACACATCCAACAAATG 57.557 39.130 0.00 0.00 0.00 2.32
2102 2363 5.132502 AGAGACAACACATCCAACAAATGA 58.867 37.500 0.00 0.00 0.00 2.57
2103 2364 5.240183 AGAGACAACACATCCAACAAATGAG 59.760 40.000 0.00 0.00 0.00 2.90
2104 2365 4.889409 AGACAACACATCCAACAAATGAGT 59.111 37.500 0.00 0.00 30.61 3.41
2105 2366 4.935702 ACAACACATCCAACAAATGAGTG 58.064 39.130 0.00 0.00 34.44 3.51
2106 2367 4.402155 ACAACACATCCAACAAATGAGTGT 59.598 37.500 0.00 0.00 39.40 3.55
2107 2368 4.836125 ACACATCCAACAAATGAGTGTC 57.164 40.909 0.00 0.00 35.74 3.67
2108 2369 4.206375 ACACATCCAACAAATGAGTGTCA 58.794 39.130 0.00 0.00 35.74 3.58
2109 2370 4.036734 ACACATCCAACAAATGAGTGTCAC 59.963 41.667 0.00 0.00 35.74 3.67
2110 2371 4.276678 CACATCCAACAAATGAGTGTCACT 59.723 41.667 4.81 4.81 0.00 3.41
2111 2372 5.469760 CACATCCAACAAATGAGTGTCACTA 59.530 40.000 5.21 0.00 0.00 2.74
2112 2373 5.702670 ACATCCAACAAATGAGTGTCACTAG 59.297 40.000 5.21 0.00 0.00 2.57
2113 2374 4.641396 TCCAACAAATGAGTGTCACTAGG 58.359 43.478 5.21 0.00 0.00 3.02
2114 2375 4.346709 TCCAACAAATGAGTGTCACTAGGA 59.653 41.667 5.21 1.36 0.00 2.94
2115 2376 5.013079 TCCAACAAATGAGTGTCACTAGGAT 59.987 40.000 5.21 0.00 0.00 3.24
2116 2377 6.212589 TCCAACAAATGAGTGTCACTAGGATA 59.787 38.462 5.21 0.00 0.00 2.59
2117 2378 6.313905 CCAACAAATGAGTGTCACTAGGATAC 59.686 42.308 5.21 0.00 37.86 2.24
2118 2379 5.651530 ACAAATGAGTGTCACTAGGATACG 58.348 41.667 5.21 0.00 42.00 3.06
2119 2380 3.992260 ATGAGTGTCACTAGGATACGC 57.008 47.619 5.21 0.28 42.00 4.42
2120 2381 2.718563 TGAGTGTCACTAGGATACGCA 58.281 47.619 5.21 9.19 43.12 5.24
2121 2382 3.288092 TGAGTGTCACTAGGATACGCAT 58.712 45.455 5.21 0.00 41.18 4.73
2122 2383 3.066760 TGAGTGTCACTAGGATACGCATG 59.933 47.826 5.21 0.00 41.18 4.06
2123 2384 2.128035 GTGTCACTAGGATACGCATGC 58.872 52.381 7.91 7.91 46.39 4.06
2124 2385 2.031870 TGTCACTAGGATACGCATGCT 58.968 47.619 17.13 5.50 46.39 3.79
2125 2386 3.004419 GTGTCACTAGGATACGCATGCTA 59.996 47.826 17.13 7.69 46.39 3.49
2126 2387 3.634910 TGTCACTAGGATACGCATGCTAA 59.365 43.478 17.13 3.45 46.39 3.09
2127 2388 4.280929 TGTCACTAGGATACGCATGCTAAT 59.719 41.667 17.13 8.78 46.39 1.73
2128 2389 4.623167 GTCACTAGGATACGCATGCTAATG 59.377 45.833 17.13 0.00 46.39 1.90
2129 2390 4.280929 TCACTAGGATACGCATGCTAATGT 59.719 41.667 17.13 8.68 46.39 2.71
2131 2392 2.771089 AGGATACGCATGCTAATGTGG 58.229 47.619 17.13 0.00 46.60 4.17
2132 2393 2.368548 AGGATACGCATGCTAATGTGGA 59.631 45.455 17.13 0.00 46.60 4.02
2134 2395 3.125829 GGATACGCATGCTAATGTGGATG 59.874 47.826 17.13 0.00 45.97 3.51
2135 2396 2.042686 ACGCATGCTAATGTGGATGT 57.957 45.000 17.13 0.00 46.60 3.06
2136 2397 2.368439 ACGCATGCTAATGTGGATGTT 58.632 42.857 17.13 0.00 46.60 2.71
2137 2398 2.097954 ACGCATGCTAATGTGGATGTTG 59.902 45.455 17.13 0.00 46.60 3.33
2138 2399 2.542205 CGCATGCTAATGTGGATGTTGG 60.542 50.000 17.13 0.00 40.07 3.77
2139 2400 2.800629 GCATGCTAATGTGGATGTTGGC 60.801 50.000 11.37 0.00 37.94 4.52
2140 2401 1.473258 TGCTAATGTGGATGTTGGCC 58.527 50.000 0.00 0.00 31.68 5.36
2141 2402 1.272369 TGCTAATGTGGATGTTGGCCA 60.272 47.619 0.00 0.00 31.68 5.36
2142 2403 2.034124 GCTAATGTGGATGTTGGCCAT 58.966 47.619 6.09 0.00 37.81 4.40
2143 2404 3.221771 GCTAATGTGGATGTTGGCCATA 58.778 45.455 6.09 0.00 37.81 2.74
2144 2405 3.004734 GCTAATGTGGATGTTGGCCATAC 59.995 47.826 6.09 8.77 37.81 2.39
2145 2406 2.824689 ATGTGGATGTTGGCCATACA 57.175 45.000 18.84 18.84 42.35 2.29
2147 2408 3.586843 TGGATGTTGGCCATACACC 57.413 52.632 18.90 19.56 39.59 4.16
2148 2409 0.393673 TGGATGTTGGCCATACACCG 60.394 55.000 18.90 0.00 39.59 4.94
2149 2410 0.107410 GGATGTTGGCCATACACCGA 60.107 55.000 18.90 0.00 34.19 4.69
2150 2411 1.014352 GATGTTGGCCATACACCGAC 58.986 55.000 18.90 8.45 41.35 4.79
2151 2412 0.618458 ATGTTGGCCATACACCGACT 59.382 50.000 18.90 4.67 41.51 4.18
2152 2413 1.268066 TGTTGGCCATACACCGACTA 58.732 50.000 6.09 0.00 41.51 2.59
2153 2414 1.624312 TGTTGGCCATACACCGACTAA 59.376 47.619 6.09 0.00 41.51 2.24
2154 2415 2.038689 TGTTGGCCATACACCGACTAAA 59.961 45.455 6.09 0.00 41.51 1.85
2155 2416 2.676342 GTTGGCCATACACCGACTAAAG 59.324 50.000 6.09 0.00 38.39 1.85
2156 2417 2.181125 TGGCCATACACCGACTAAAGA 58.819 47.619 0.00 0.00 0.00 2.52
2157 2418 2.167693 TGGCCATACACCGACTAAAGAG 59.832 50.000 0.00 0.00 0.00 2.85
2158 2419 2.429610 GGCCATACACCGACTAAAGAGA 59.570 50.000 0.00 0.00 0.00 3.10
2159 2420 3.118884 GGCCATACACCGACTAAAGAGAA 60.119 47.826 0.00 0.00 0.00 2.87
2160 2421 4.113354 GCCATACACCGACTAAAGAGAAG 58.887 47.826 0.00 0.00 0.00 2.85
2161 2422 4.113354 CCATACACCGACTAAAGAGAAGC 58.887 47.826 0.00 0.00 0.00 3.86
2162 2423 4.142138 CCATACACCGACTAAAGAGAAGCT 60.142 45.833 0.00 0.00 0.00 3.74
2163 2424 5.411781 CATACACCGACTAAAGAGAAGCTT 58.588 41.667 0.00 0.00 38.88 3.74
2164 2425 3.654414 ACACCGACTAAAGAGAAGCTTG 58.346 45.455 2.10 0.00 36.80 4.01
2165 2426 3.069729 ACACCGACTAAAGAGAAGCTTGT 59.930 43.478 2.10 0.00 36.80 3.16
2166 2427 3.675698 CACCGACTAAAGAGAAGCTTGTC 59.324 47.826 15.54 15.54 36.80 3.18
2167 2428 3.254892 CCGACTAAAGAGAAGCTTGTCC 58.745 50.000 19.26 2.92 36.80 4.02
2168 2429 3.306088 CCGACTAAAGAGAAGCTTGTCCA 60.306 47.826 19.26 5.16 36.80 4.02
2169 2430 3.675698 CGACTAAAGAGAAGCTTGTCCAC 59.324 47.826 19.26 0.00 36.80 4.02
2170 2431 3.997681 GACTAAAGAGAAGCTTGTCCACC 59.002 47.826 19.26 0.00 36.80 4.61
2171 2432 1.884235 AAAGAGAAGCTTGTCCACCG 58.116 50.000 19.26 0.00 36.80 4.94
2172 2433 1.048601 AAGAGAAGCTTGTCCACCGA 58.951 50.000 19.26 0.00 34.93 4.69
2173 2434 0.318762 AGAGAAGCTTGTCCACCGAC 59.681 55.000 19.26 0.00 39.66 4.79
2174 2435 0.318762 GAGAAGCTTGTCCACCGACT 59.681 55.000 12.50 0.00 39.94 4.18
2175 2436 1.544691 GAGAAGCTTGTCCACCGACTA 59.455 52.381 12.50 0.00 39.94 2.59
2176 2437 1.546476 AGAAGCTTGTCCACCGACTAG 59.454 52.381 2.10 0.00 42.61 2.57
2178 2439 1.448013 GCTTGTCCACCGACTAGGC 60.448 63.158 0.00 0.00 46.52 3.93
2179 2440 1.218316 CTTGTCCACCGACTAGGCC 59.782 63.158 0.00 0.00 46.52 5.19
2180 2441 1.229082 TTGTCCACCGACTAGGCCT 60.229 57.895 11.78 11.78 46.52 5.19
2181 2442 1.541310 TTGTCCACCGACTAGGCCTG 61.541 60.000 17.99 8.18 46.52 4.85
2182 2443 2.363795 TCCACCGACTAGGCCTGG 60.364 66.667 17.99 16.79 46.52 4.45
2183 2444 3.470888 CCACCGACTAGGCCTGGG 61.471 72.222 21.53 15.67 46.52 4.45
2184 2445 4.162690 CACCGACTAGGCCTGGGC 62.163 72.222 21.53 17.66 46.52 5.36
2185 2446 4.715130 ACCGACTAGGCCTGGGCA 62.715 66.667 23.50 7.57 46.52 5.36
2186 2447 3.164269 CCGACTAGGCCTGGGCAT 61.164 66.667 23.50 10.44 44.11 4.40
2187 2448 2.746375 CCGACTAGGCCTGGGCATT 61.746 63.158 23.50 0.00 44.11 3.56
2188 2449 1.224592 CGACTAGGCCTGGGCATTT 59.775 57.895 23.50 0.00 44.11 2.32
2189 2450 1.097547 CGACTAGGCCTGGGCATTTG 61.098 60.000 23.50 0.80 44.11 2.32
2190 2451 0.753111 GACTAGGCCTGGGCATTTGG 60.753 60.000 18.85 6.42 44.11 3.28
2191 2452 1.307647 CTAGGCCTGGGCATTTGGT 59.692 57.895 23.25 2.65 44.11 3.67
2192 2453 0.753111 CTAGGCCTGGGCATTTGGTC 60.753 60.000 23.25 0.00 44.11 4.02
2193 2454 1.214305 TAGGCCTGGGCATTTGGTCT 61.214 55.000 23.25 1.08 44.11 3.85
2194 2455 1.214305 AGGCCTGGGCATTTGGTCTA 61.214 55.000 23.25 0.00 44.11 2.59
2195 2456 0.753111 GGCCTGGGCATTTGGTCTAG 60.753 60.000 16.34 0.00 44.11 2.43
2196 2457 1.387295 GCCTGGGCATTTGGTCTAGC 61.387 60.000 6.75 0.00 41.49 3.42
2197 2458 0.257039 CCTGGGCATTTGGTCTAGCT 59.743 55.000 0.00 0.00 0.00 3.32
2198 2459 1.386533 CTGGGCATTTGGTCTAGCTG 58.613 55.000 0.00 0.00 0.00 4.24
2199 2460 0.991146 TGGGCATTTGGTCTAGCTGA 59.009 50.000 0.00 0.00 0.00 4.26
2200 2461 1.065199 TGGGCATTTGGTCTAGCTGAG 60.065 52.381 0.00 0.00 0.00 3.35
2201 2462 1.065126 GGGCATTTGGTCTAGCTGAGT 60.065 52.381 0.00 0.00 0.00 3.41
2202 2463 2.284190 GGCATTTGGTCTAGCTGAGTC 58.716 52.381 0.00 0.00 0.00 3.36
2203 2464 1.929836 GCATTTGGTCTAGCTGAGTCG 59.070 52.381 0.00 0.00 0.00 4.18
2204 2465 2.417379 GCATTTGGTCTAGCTGAGTCGA 60.417 50.000 0.00 0.00 0.00 4.20
2205 2466 3.182967 CATTTGGTCTAGCTGAGTCGAC 58.817 50.000 7.70 7.70 0.00 4.20
2206 2467 1.174783 TTGGTCTAGCTGAGTCGACC 58.825 55.000 13.01 4.42 44.76 4.79
2207 2468 1.025113 TGGTCTAGCTGAGTCGACCG 61.025 60.000 13.01 2.11 46.88 4.79
2208 2469 1.716826 GGTCTAGCTGAGTCGACCGG 61.717 65.000 13.01 10.06 36.88 5.28
2209 2470 1.025647 GTCTAGCTGAGTCGACCGGT 61.026 60.000 6.92 6.92 0.00 5.28
2210 2471 0.322277 TCTAGCTGAGTCGACCGGTT 60.322 55.000 9.42 9.43 0.00 4.44
2211 2472 1.065926 TCTAGCTGAGTCGACCGGTTA 60.066 52.381 9.42 10.06 0.00 2.85
2212 2473 1.331138 CTAGCTGAGTCGACCGGTTAG 59.669 57.143 9.42 15.23 0.00 2.34
2222 2483 2.897972 CCGGTTAGGTTCCTCGGG 59.102 66.667 8.88 1.13 37.35 5.14
2223 2484 1.986210 CCGGTTAGGTTCCTCGGGT 60.986 63.158 8.88 0.00 37.35 5.28
2224 2485 1.547472 CCGGTTAGGTTCCTCGGGTT 61.547 60.000 8.88 0.00 37.35 4.11
2225 2486 1.185315 CGGTTAGGTTCCTCGGGTTA 58.815 55.000 0.00 0.00 0.00 2.85
2226 2487 1.758862 CGGTTAGGTTCCTCGGGTTAT 59.241 52.381 0.00 0.00 0.00 1.89
2227 2488 2.169144 CGGTTAGGTTCCTCGGGTTATT 59.831 50.000 0.00 0.00 0.00 1.40
2228 2489 3.538591 GGTTAGGTTCCTCGGGTTATTG 58.461 50.000 0.00 0.00 0.00 1.90
2229 2490 3.198417 GGTTAGGTTCCTCGGGTTATTGA 59.802 47.826 0.00 0.00 0.00 2.57
2230 2491 4.439968 GTTAGGTTCCTCGGGTTATTGAG 58.560 47.826 0.00 0.00 0.00 3.02
2231 2492 2.829023 AGGTTCCTCGGGTTATTGAGA 58.171 47.619 0.00 0.00 34.04 3.27
2232 2493 3.178865 AGGTTCCTCGGGTTATTGAGAA 58.821 45.455 0.00 0.00 34.04 2.87
2233 2494 3.585732 AGGTTCCTCGGGTTATTGAGAAA 59.414 43.478 0.00 0.00 34.04 2.52
2234 2495 4.227527 AGGTTCCTCGGGTTATTGAGAAAT 59.772 41.667 0.00 0.00 34.04 2.17
2235 2496 5.427481 AGGTTCCTCGGGTTATTGAGAAATA 59.573 40.000 0.00 0.00 34.04 1.40
2236 2497 5.526479 GGTTCCTCGGGTTATTGAGAAATAC 59.474 44.000 0.00 0.00 34.04 1.89
2237 2498 4.940463 TCCTCGGGTTATTGAGAAATACG 58.060 43.478 0.00 0.00 34.04 3.06
2238 2499 4.056050 CCTCGGGTTATTGAGAAATACGG 58.944 47.826 0.00 0.00 34.04 4.02
2239 2500 4.442472 CCTCGGGTTATTGAGAAATACGGT 60.442 45.833 0.00 0.00 34.04 4.83
2240 2501 5.088680 TCGGGTTATTGAGAAATACGGTT 57.911 39.130 0.00 0.00 0.00 4.44
2241 2502 6.219417 TCGGGTTATTGAGAAATACGGTTA 57.781 37.500 0.00 0.00 0.00 2.85
2242 2503 6.819284 TCGGGTTATTGAGAAATACGGTTAT 58.181 36.000 0.00 0.00 0.00 1.89
2243 2504 6.925165 TCGGGTTATTGAGAAATACGGTTATC 59.075 38.462 0.00 0.00 0.00 1.75
2244 2505 6.702723 CGGGTTATTGAGAAATACGGTTATCA 59.297 38.462 0.00 0.00 0.00 2.15
2245 2506 7.225145 CGGGTTATTGAGAAATACGGTTATCAA 59.775 37.037 7.84 7.84 41.50 2.57
2246 2507 8.895737 GGGTTATTGAGAAATACGGTTATCAAA 58.104 33.333 9.03 0.04 40.86 2.69
2262 2523 7.456253 GGTTATCAAATATTCATGACCGATCG 58.544 38.462 8.51 8.51 0.00 3.69
2263 2524 7.413000 GGTTATCAAATATTCATGACCGATCGG 60.413 40.741 32.20 32.20 42.03 4.18
2276 2537 3.658351 CCGATCGGTCATTTGAGAAAC 57.342 47.619 26.35 0.00 0.00 2.78
2277 2538 3.262420 CCGATCGGTCATTTGAGAAACT 58.738 45.455 26.35 0.00 0.00 2.66
2278 2539 3.062639 CCGATCGGTCATTTGAGAAACTG 59.937 47.826 26.35 0.00 0.00 3.16
2279 2540 3.484229 CGATCGGTCATTTGAGAAACTGC 60.484 47.826 7.38 0.00 0.00 4.40
2280 2541 3.126001 TCGGTCATTTGAGAAACTGCT 57.874 42.857 0.00 0.00 0.00 4.24
2281 2542 4.265904 TCGGTCATTTGAGAAACTGCTA 57.734 40.909 0.00 0.00 0.00 3.49
2282 2543 4.637276 TCGGTCATTTGAGAAACTGCTAA 58.363 39.130 0.00 0.00 0.00 3.09
2283 2544 4.451096 TCGGTCATTTGAGAAACTGCTAAC 59.549 41.667 0.00 0.00 0.00 2.34
2284 2545 4.378459 CGGTCATTTGAGAAACTGCTAACC 60.378 45.833 0.00 0.00 0.00 2.85
2285 2546 4.518970 GGTCATTTGAGAAACTGCTAACCA 59.481 41.667 0.00 0.00 0.00 3.67
2286 2547 5.009610 GGTCATTTGAGAAACTGCTAACCAA 59.990 40.000 0.00 0.00 0.00 3.67
2287 2548 6.145535 GTCATTTGAGAAACTGCTAACCAAG 58.854 40.000 0.00 0.00 0.00 3.61
2288 2549 5.241506 TCATTTGAGAAACTGCTAACCAAGG 59.758 40.000 0.00 0.00 0.00 3.61
2289 2550 2.504367 TGAGAAACTGCTAACCAAGGC 58.496 47.619 0.00 0.00 0.00 4.35
2290 2551 2.106511 TGAGAAACTGCTAACCAAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
2291 2552 3.149981 GAGAAACTGCTAACCAAGGCTT 58.850 45.455 0.00 0.00 0.00 4.35
2292 2553 3.149981 AGAAACTGCTAACCAAGGCTTC 58.850 45.455 0.00 0.00 0.00 3.86
2293 2554 1.523758 AACTGCTAACCAAGGCTTCG 58.476 50.000 0.00 0.00 0.00 3.79
2294 2555 0.321653 ACTGCTAACCAAGGCTTCGG 60.322 55.000 12.35 12.35 0.00 4.30
2295 2556 0.321653 CTGCTAACCAAGGCTTCGGT 60.322 55.000 13.43 13.43 36.98 4.69
2296 2557 0.321298 TGCTAACCAAGGCTTCGGTC 60.321 55.000 17.72 9.28 33.17 4.79
2297 2558 0.321298 GCTAACCAAGGCTTCGGTCA 60.321 55.000 17.72 6.66 33.17 4.02
2298 2559 1.880646 GCTAACCAAGGCTTCGGTCAA 60.881 52.381 17.72 10.70 33.17 3.18
2299 2560 1.804748 CTAACCAAGGCTTCGGTCAAC 59.195 52.381 17.72 0.00 33.17 3.18
2300 2561 0.822121 AACCAAGGCTTCGGTCAACC 60.822 55.000 17.72 0.00 33.17 3.77
2301 2562 1.228124 CCAAGGCTTCGGTCAACCA 60.228 57.895 0.00 0.00 35.14 3.67
2302 2563 0.821711 CCAAGGCTTCGGTCAACCAA 60.822 55.000 0.00 0.00 35.14 3.67
2303 2564 1.028905 CAAGGCTTCGGTCAACCAAA 58.971 50.000 0.00 0.00 35.14 3.28
2304 2565 1.407258 CAAGGCTTCGGTCAACCAAAA 59.593 47.619 0.00 0.00 35.14 2.44
2305 2566 1.770294 AGGCTTCGGTCAACCAAAAA 58.230 45.000 0.00 0.00 35.14 1.94
2306 2567 1.681264 AGGCTTCGGTCAACCAAAAAG 59.319 47.619 0.00 1.51 35.14 2.27
2307 2568 1.407618 GGCTTCGGTCAACCAAAAAGT 59.592 47.619 0.00 0.00 35.14 2.66
2308 2569 2.543031 GGCTTCGGTCAACCAAAAAGTC 60.543 50.000 0.00 0.00 35.14 3.01
2309 2570 2.098443 GCTTCGGTCAACCAAAAAGTCA 59.902 45.455 0.00 0.00 35.14 3.41
2310 2571 3.792124 GCTTCGGTCAACCAAAAAGTCAG 60.792 47.826 0.00 0.00 35.14 3.51
2311 2572 2.993937 TCGGTCAACCAAAAAGTCAGT 58.006 42.857 0.00 0.00 35.14 3.41
2312 2573 3.349022 TCGGTCAACCAAAAAGTCAGTT 58.651 40.909 0.00 0.00 35.14 3.16
2313 2574 3.375922 TCGGTCAACCAAAAAGTCAGTTC 59.624 43.478 0.00 0.00 35.14 3.01
2314 2575 3.691498 GGTCAACCAAAAAGTCAGTTCG 58.309 45.455 0.00 0.00 35.64 3.95
2315 2576 3.488553 GGTCAACCAAAAAGTCAGTTCGG 60.489 47.826 0.00 0.00 35.64 4.30
2316 2577 3.128068 GTCAACCAAAAAGTCAGTTCGGT 59.872 43.478 0.00 0.00 0.00 4.69
2317 2578 3.375922 TCAACCAAAAAGTCAGTTCGGTC 59.624 43.478 0.00 0.00 0.00 4.79
2318 2579 2.294979 ACCAAAAAGTCAGTTCGGTCC 58.705 47.619 0.00 0.00 0.00 4.46
2319 2580 2.092592 ACCAAAAAGTCAGTTCGGTCCT 60.093 45.455 0.00 0.00 0.00 3.85
2320 2581 2.548480 CCAAAAAGTCAGTTCGGTCCTC 59.452 50.000 0.00 0.00 0.00 3.71
2321 2582 2.150397 AAAAGTCAGTTCGGTCCTCG 57.850 50.000 0.00 0.00 40.90 4.63
2322 2583 0.317479 AAAGTCAGTTCGGTCCTCGG 59.683 55.000 0.00 0.00 39.77 4.63
2323 2584 0.826672 AAGTCAGTTCGGTCCTCGGT 60.827 55.000 0.00 0.00 39.77 4.69
2324 2585 0.826672 AGTCAGTTCGGTCCTCGGTT 60.827 55.000 0.00 0.00 39.77 4.44
2325 2586 0.033090 GTCAGTTCGGTCCTCGGTTT 59.967 55.000 0.00 0.00 39.77 3.27
2326 2587 1.270550 GTCAGTTCGGTCCTCGGTTTA 59.729 52.381 0.00 0.00 39.77 2.01
2327 2588 1.962807 TCAGTTCGGTCCTCGGTTTAA 59.037 47.619 0.00 0.00 39.77 1.52
2328 2589 2.064014 CAGTTCGGTCCTCGGTTTAAC 58.936 52.381 0.00 0.00 39.77 2.01
2329 2590 1.966354 AGTTCGGTCCTCGGTTTAACT 59.034 47.619 0.00 0.00 39.77 2.24
2330 2591 2.029560 AGTTCGGTCCTCGGTTTAACTC 60.030 50.000 0.00 0.00 39.77 3.01
2331 2592 0.523072 TCGGTCCTCGGTTTAACTCG 59.477 55.000 0.00 0.00 39.77 4.18
2332 2593 0.523072 CGGTCCTCGGTTTAACTCGA 59.477 55.000 8.01 8.01 34.75 4.04
2333 2594 1.068333 CGGTCCTCGGTTTAACTCGAA 60.068 52.381 9.20 0.00 34.87 3.71
2334 2595 2.332104 GGTCCTCGGTTTAACTCGAAC 58.668 52.381 9.20 6.32 34.87 3.95
2335 2596 1.981533 GTCCTCGGTTTAACTCGAACG 59.018 52.381 9.20 0.00 34.87 3.95
2336 2597 1.879380 TCCTCGGTTTAACTCGAACGA 59.121 47.619 9.20 0.00 34.87 3.85
2337 2598 2.293122 TCCTCGGTTTAACTCGAACGAA 59.707 45.455 9.20 0.00 34.87 3.85
2338 2599 3.052036 CCTCGGTTTAACTCGAACGAAA 58.948 45.455 9.20 0.00 34.87 3.46
2339 2600 3.121227 CCTCGGTTTAACTCGAACGAAAC 60.121 47.826 9.20 7.02 34.87 2.78
2340 2601 2.794350 TCGGTTTAACTCGAACGAAACC 59.206 45.455 18.30 18.30 44.85 3.27
2341 2602 3.159486 GGTTTAACTCGAACGAAACCG 57.841 47.619 15.18 0.00 40.92 4.44
2342 2603 2.096762 GGTTTAACTCGAACGAAACCGG 60.097 50.000 15.18 0.00 40.92 5.28
2343 2604 2.507339 TTAACTCGAACGAAACCGGT 57.493 45.000 0.00 0.00 0.00 5.28
2344 2605 2.507339 TAACTCGAACGAAACCGGTT 57.493 45.000 15.86 15.86 0.00 4.44
2345 2606 1.211743 AACTCGAACGAAACCGGTTC 58.788 50.000 22.53 13.10 40.23 3.62
2346 2607 0.386838 ACTCGAACGAAACCGGTTCT 59.613 50.000 22.53 11.06 41.19 3.01
2347 2608 1.058404 CTCGAACGAAACCGGTTCTC 58.942 55.000 22.53 18.06 41.19 2.87
2348 2609 0.670162 TCGAACGAAACCGGTTCTCT 59.330 50.000 22.53 4.66 41.19 3.10
2349 2610 0.782384 CGAACGAAACCGGTTCTCTG 59.218 55.000 22.53 12.96 41.19 3.35
2350 2611 1.601162 CGAACGAAACCGGTTCTCTGA 60.601 52.381 22.53 0.00 41.19 3.27
2351 2612 2.476821 GAACGAAACCGGTTCTCTGAA 58.523 47.619 22.53 0.00 40.41 3.02
2352 2613 2.607631 ACGAAACCGGTTCTCTGAAA 57.392 45.000 22.53 0.00 33.70 2.69
2353 2614 2.908916 ACGAAACCGGTTCTCTGAAAA 58.091 42.857 22.53 0.00 33.70 2.29
2354 2615 3.473625 ACGAAACCGGTTCTCTGAAAAT 58.526 40.909 22.53 0.13 33.70 1.82
2355 2616 3.497262 ACGAAACCGGTTCTCTGAAAATC 59.503 43.478 22.53 10.02 33.70 2.17
2356 2617 3.746492 CGAAACCGGTTCTCTGAAAATCT 59.254 43.478 22.53 0.00 33.70 2.40
2357 2618 4.377431 CGAAACCGGTTCTCTGAAAATCTG 60.377 45.833 22.53 4.13 33.70 2.90
2358 2619 4.351874 AACCGGTTCTCTGAAAATCTGA 57.648 40.909 15.86 0.00 0.00 3.27
2359 2620 3.931578 ACCGGTTCTCTGAAAATCTGAG 58.068 45.455 0.00 7.66 41.87 3.35
2360 2621 2.675348 CCGGTTCTCTGAAAATCTGAGC 59.325 50.000 8.80 0.00 40.78 4.26
2361 2622 3.594134 CGGTTCTCTGAAAATCTGAGCT 58.406 45.455 8.80 0.00 40.78 4.09
2362 2623 4.382040 CCGGTTCTCTGAAAATCTGAGCTA 60.382 45.833 8.80 0.00 40.78 3.32
2363 2624 5.355596 CGGTTCTCTGAAAATCTGAGCTAT 58.644 41.667 8.80 0.00 40.78 2.97
2364 2625 5.233902 CGGTTCTCTGAAAATCTGAGCTATG 59.766 44.000 8.80 0.00 40.78 2.23
2365 2626 5.526846 GGTTCTCTGAAAATCTGAGCTATGG 59.473 44.000 8.80 0.00 40.78 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.020839 CCATGGGATTGAGCTTTTGACTTT 60.021 41.667 2.85 0.00 0.00 2.66
171 174 4.527816 TGCATGGGATAAAATAAGCCATCC 59.472 41.667 0.00 0.00 36.92 3.51
179 182 9.066892 GTCTATCTTGTTGCATGGGATAAAATA 57.933 33.333 0.00 0.00 0.00 1.40
280 285 1.679680 TCAAGAACTTGACGTCGGTCT 59.320 47.619 11.62 8.15 43.90 3.85
318 325 0.463654 ATTCCGAGCTTGGCGCATAA 60.464 50.000 16.01 4.25 42.61 1.90
465 474 1.198759 AGGCGTACTTGGTGATGGGT 61.199 55.000 0.00 0.00 0.00 4.51
475 484 0.668401 GCACGGTTGTAGGCGTACTT 60.668 55.000 16.85 0.00 0.00 2.24
825 837 1.472990 AAGCGTTGTTGTTTTAGCGC 58.527 45.000 0.00 0.00 44.36 5.92
985 1004 0.399806 TCCATGGGGATGATCGTGGA 60.400 55.000 13.02 0.00 44.20 4.02
1755 1982 2.561419 CCGAGGAGAAGTAACCAAGTGA 59.439 50.000 0.00 0.00 0.00 3.41
2070 2331 3.955650 TGTGTTGTCTCTTAGTAGGCC 57.044 47.619 0.00 0.00 0.00 5.19
2071 2332 4.081642 TGGATGTGTTGTCTCTTAGTAGGC 60.082 45.833 0.00 0.00 0.00 3.93
2072 2333 5.661056 TGGATGTGTTGTCTCTTAGTAGG 57.339 43.478 0.00 0.00 0.00 3.18
2073 2334 6.455647 TGTTGGATGTGTTGTCTCTTAGTAG 58.544 40.000 0.00 0.00 0.00 2.57
2074 2335 6.413783 TGTTGGATGTGTTGTCTCTTAGTA 57.586 37.500 0.00 0.00 0.00 1.82
2075 2336 5.290493 TGTTGGATGTGTTGTCTCTTAGT 57.710 39.130 0.00 0.00 0.00 2.24
2076 2337 6.618287 TTTGTTGGATGTGTTGTCTCTTAG 57.382 37.500 0.00 0.00 0.00 2.18
2077 2338 6.770303 TCATTTGTTGGATGTGTTGTCTCTTA 59.230 34.615 0.00 0.00 0.00 2.10
2078 2339 5.593909 TCATTTGTTGGATGTGTTGTCTCTT 59.406 36.000 0.00 0.00 0.00 2.85
2079 2340 5.132502 TCATTTGTTGGATGTGTTGTCTCT 58.867 37.500 0.00 0.00 0.00 3.10
2080 2341 5.009010 ACTCATTTGTTGGATGTGTTGTCTC 59.991 40.000 0.00 0.00 29.69 3.36
2081 2342 4.889409 ACTCATTTGTTGGATGTGTTGTCT 59.111 37.500 0.00 0.00 29.69 3.41
2082 2343 4.977963 CACTCATTTGTTGGATGTGTTGTC 59.022 41.667 0.00 0.00 31.11 3.18
2083 2344 4.402155 ACACTCATTTGTTGGATGTGTTGT 59.598 37.500 0.00 0.00 33.93 3.32
2084 2345 4.935702 ACACTCATTTGTTGGATGTGTTG 58.064 39.130 0.00 0.00 33.93 3.33
2085 2346 4.644234 TGACACTCATTTGTTGGATGTGTT 59.356 37.500 0.00 0.00 36.01 3.32
2086 2347 4.036734 GTGACACTCATTTGTTGGATGTGT 59.963 41.667 0.00 0.00 37.37 3.72
2087 2348 4.276678 AGTGACACTCATTTGTTGGATGTG 59.723 41.667 1.07 0.00 0.00 3.21
2088 2349 4.464008 AGTGACACTCATTTGTTGGATGT 58.536 39.130 1.07 0.00 0.00 3.06
2089 2350 5.122869 CCTAGTGACACTCATTTGTTGGATG 59.877 44.000 12.39 0.00 0.00 3.51
2090 2351 5.013079 TCCTAGTGACACTCATTTGTTGGAT 59.987 40.000 12.39 0.00 0.00 3.41
2091 2352 4.346709 TCCTAGTGACACTCATTTGTTGGA 59.653 41.667 12.39 5.58 0.00 3.53
2092 2353 4.641396 TCCTAGTGACACTCATTTGTTGG 58.359 43.478 12.39 3.44 0.00 3.77
2093 2354 6.035005 CGTATCCTAGTGACACTCATTTGTTG 59.965 42.308 12.39 0.00 0.00 3.33
2094 2355 6.100004 CGTATCCTAGTGACACTCATTTGTT 58.900 40.000 12.39 0.00 0.00 2.83
2095 2356 5.651530 CGTATCCTAGTGACACTCATTTGT 58.348 41.667 12.39 0.00 0.00 2.83
2096 2357 4.504461 GCGTATCCTAGTGACACTCATTTG 59.496 45.833 12.39 0.00 0.00 2.32
2097 2358 4.159693 TGCGTATCCTAGTGACACTCATTT 59.840 41.667 12.39 0.00 0.00 2.32
2098 2359 3.699538 TGCGTATCCTAGTGACACTCATT 59.300 43.478 12.39 0.00 0.00 2.57
2099 2360 3.288092 TGCGTATCCTAGTGACACTCAT 58.712 45.455 12.39 5.68 0.00 2.90
2100 2361 2.718563 TGCGTATCCTAGTGACACTCA 58.281 47.619 12.39 0.00 0.00 3.41
2101 2362 3.633235 CATGCGTATCCTAGTGACACTC 58.367 50.000 12.39 0.00 0.00 3.51
2102 2363 2.223829 GCATGCGTATCCTAGTGACACT 60.224 50.000 13.68 13.68 0.00 3.55
2103 2364 2.128035 GCATGCGTATCCTAGTGACAC 58.872 52.381 0.00 0.00 0.00 3.67
2104 2365 2.031870 AGCATGCGTATCCTAGTGACA 58.968 47.619 13.01 0.00 0.00 3.58
2105 2366 2.802787 AGCATGCGTATCCTAGTGAC 57.197 50.000 13.01 0.00 0.00 3.67
2106 2367 4.280929 ACATTAGCATGCGTATCCTAGTGA 59.719 41.667 13.01 0.00 33.05 3.41
2107 2368 4.386954 CACATTAGCATGCGTATCCTAGTG 59.613 45.833 13.01 5.59 33.05 2.74
2108 2369 4.560128 CACATTAGCATGCGTATCCTAGT 58.440 43.478 13.01 1.61 33.05 2.57
2109 2370 3.928992 CCACATTAGCATGCGTATCCTAG 59.071 47.826 13.01 0.97 33.05 3.02
2110 2371 3.576550 TCCACATTAGCATGCGTATCCTA 59.423 43.478 13.01 0.00 33.05 2.94
2111 2372 2.368548 TCCACATTAGCATGCGTATCCT 59.631 45.455 13.01 0.00 33.05 3.24
2112 2373 2.766313 TCCACATTAGCATGCGTATCC 58.234 47.619 13.01 0.00 33.05 2.59
2113 2374 3.748048 ACATCCACATTAGCATGCGTATC 59.252 43.478 13.01 0.00 33.05 2.24
2114 2375 3.743521 ACATCCACATTAGCATGCGTAT 58.256 40.909 13.01 6.91 33.05 3.06
2115 2376 3.192541 ACATCCACATTAGCATGCGTA 57.807 42.857 13.01 4.48 33.05 4.42
2116 2377 2.042686 ACATCCACATTAGCATGCGT 57.957 45.000 13.01 0.32 33.05 5.24
2117 2378 2.542205 CCAACATCCACATTAGCATGCG 60.542 50.000 13.01 0.00 33.05 4.73
2118 2379 2.800629 GCCAACATCCACATTAGCATGC 60.801 50.000 10.51 10.51 33.05 4.06
2119 2380 2.223876 GGCCAACATCCACATTAGCATG 60.224 50.000 0.00 0.00 36.34 4.06
2120 2381 2.034124 GGCCAACATCCACATTAGCAT 58.966 47.619 0.00 0.00 0.00 3.79
2121 2382 1.272369 TGGCCAACATCCACATTAGCA 60.272 47.619 0.61 0.00 0.00 3.49
2122 2383 1.473258 TGGCCAACATCCACATTAGC 58.527 50.000 0.61 0.00 0.00 3.09
2123 2384 4.036734 GTGTATGGCCAACATCCACATTAG 59.963 45.833 10.96 0.00 43.59 1.73
2124 2385 3.951037 GTGTATGGCCAACATCCACATTA 59.049 43.478 10.96 0.00 43.59 1.90
2125 2386 2.760092 GTGTATGGCCAACATCCACATT 59.240 45.455 10.96 0.00 43.59 2.71
2126 2387 2.378038 GTGTATGGCCAACATCCACAT 58.622 47.619 10.96 0.00 43.59 3.21
2127 2388 1.615651 GGTGTATGGCCAACATCCACA 60.616 52.381 10.96 4.49 45.29 4.17
2128 2389 1.102978 GGTGTATGGCCAACATCCAC 58.897 55.000 10.96 12.02 43.45 4.02
2129 2390 0.393673 CGGTGTATGGCCAACATCCA 60.394 55.000 10.96 0.00 41.03 3.41
2130 2391 0.107410 TCGGTGTATGGCCAACATCC 60.107 55.000 10.96 16.56 41.03 3.51
2131 2392 1.014352 GTCGGTGTATGGCCAACATC 58.986 55.000 10.96 14.92 41.03 3.06
2132 2393 0.618458 AGTCGGTGTATGGCCAACAT 59.382 50.000 10.96 0.00 43.68 2.71
2133 2394 1.268066 TAGTCGGTGTATGGCCAACA 58.732 50.000 10.96 13.21 0.00 3.33
2134 2395 2.389962 TTAGTCGGTGTATGGCCAAC 57.610 50.000 10.96 10.43 0.00 3.77
2135 2396 2.568062 TCTTTAGTCGGTGTATGGCCAA 59.432 45.455 10.96 0.00 0.00 4.52
2136 2397 2.167693 CTCTTTAGTCGGTGTATGGCCA 59.832 50.000 8.56 8.56 0.00 5.36
2137 2398 2.429610 TCTCTTTAGTCGGTGTATGGCC 59.570 50.000 0.00 0.00 0.00 5.36
2138 2399 3.795623 TCTCTTTAGTCGGTGTATGGC 57.204 47.619 0.00 0.00 0.00 4.40
2139 2400 4.113354 GCTTCTCTTTAGTCGGTGTATGG 58.887 47.826 0.00 0.00 0.00 2.74
2140 2401 5.000012 AGCTTCTCTTTAGTCGGTGTATG 58.000 43.478 0.00 0.00 0.00 2.39
2141 2402 5.047235 ACAAGCTTCTCTTTAGTCGGTGTAT 60.047 40.000 0.00 0.00 31.27 2.29
2142 2403 4.280174 ACAAGCTTCTCTTTAGTCGGTGTA 59.720 41.667 0.00 0.00 31.27 2.90
2143 2404 3.069729 ACAAGCTTCTCTTTAGTCGGTGT 59.930 43.478 0.00 0.00 31.27 4.16
2144 2405 3.654414 ACAAGCTTCTCTTTAGTCGGTG 58.346 45.455 0.00 0.00 31.27 4.94
2145 2406 3.306156 GGACAAGCTTCTCTTTAGTCGGT 60.306 47.826 0.00 0.00 31.84 4.69
2146 2407 3.254892 GGACAAGCTTCTCTTTAGTCGG 58.745 50.000 0.00 0.00 31.84 4.79
2147 2408 3.675698 GTGGACAAGCTTCTCTTTAGTCG 59.324 47.826 0.00 0.00 31.84 4.18
2148 2409 3.997681 GGTGGACAAGCTTCTCTTTAGTC 59.002 47.826 0.00 0.00 31.27 2.59
2149 2410 3.555168 CGGTGGACAAGCTTCTCTTTAGT 60.555 47.826 0.00 0.00 31.27 2.24
2150 2411 2.996621 CGGTGGACAAGCTTCTCTTTAG 59.003 50.000 0.00 0.00 31.27 1.85
2151 2412 2.631062 TCGGTGGACAAGCTTCTCTTTA 59.369 45.455 0.00 0.00 31.27 1.85
2152 2413 1.416401 TCGGTGGACAAGCTTCTCTTT 59.584 47.619 0.00 0.00 31.27 2.52
2153 2414 1.048601 TCGGTGGACAAGCTTCTCTT 58.951 50.000 0.00 0.00 34.78 2.85
2154 2415 0.318762 GTCGGTGGACAAGCTTCTCT 59.681 55.000 0.00 0.00 42.91 3.10
2155 2416 0.318762 AGTCGGTGGACAAGCTTCTC 59.681 55.000 0.00 0.00 45.92 2.87
2156 2417 1.546476 CTAGTCGGTGGACAAGCTTCT 59.454 52.381 0.00 0.00 45.92 2.85
2157 2418 1.404315 CCTAGTCGGTGGACAAGCTTC 60.404 57.143 0.00 0.00 45.92 3.86
2158 2419 0.608640 CCTAGTCGGTGGACAAGCTT 59.391 55.000 0.00 0.00 45.92 3.74
2159 2420 1.889530 GCCTAGTCGGTGGACAAGCT 61.890 60.000 0.00 0.00 45.92 3.74
2160 2421 1.448013 GCCTAGTCGGTGGACAAGC 60.448 63.158 0.00 0.00 45.92 4.01
2161 2422 1.218316 GGCCTAGTCGGTGGACAAG 59.782 63.158 0.00 0.00 45.92 3.16
2162 2423 1.229082 AGGCCTAGTCGGTGGACAA 60.229 57.895 1.29 0.00 45.92 3.18
2163 2424 1.982395 CAGGCCTAGTCGGTGGACA 60.982 63.158 3.98 0.00 45.92 4.02
2164 2425 2.722201 CCAGGCCTAGTCGGTGGAC 61.722 68.421 3.98 0.00 43.76 4.02
2165 2426 2.363795 CCAGGCCTAGTCGGTGGA 60.364 66.667 3.98 0.00 31.96 4.02
2166 2427 3.470888 CCCAGGCCTAGTCGGTGG 61.471 72.222 3.98 0.23 34.25 4.61
2167 2428 4.162690 GCCCAGGCCTAGTCGGTG 62.163 72.222 3.98 0.00 34.56 4.94
2168 2429 4.715130 TGCCCAGGCCTAGTCGGT 62.715 66.667 3.98 0.00 41.09 4.69
2169 2430 2.270874 AAATGCCCAGGCCTAGTCGG 62.271 60.000 3.98 1.32 41.09 4.79
2170 2431 1.097547 CAAATGCCCAGGCCTAGTCG 61.098 60.000 3.98 0.00 41.09 4.18
2171 2432 0.753111 CCAAATGCCCAGGCCTAGTC 60.753 60.000 3.98 0.00 41.09 2.59
2172 2433 1.307647 CCAAATGCCCAGGCCTAGT 59.692 57.895 3.98 0.00 41.09 2.57
2173 2434 0.753111 GACCAAATGCCCAGGCCTAG 60.753 60.000 3.98 0.00 41.09 3.02
2174 2435 1.214305 AGACCAAATGCCCAGGCCTA 61.214 55.000 3.98 0.00 41.09 3.93
2175 2436 1.214305 TAGACCAAATGCCCAGGCCT 61.214 55.000 0.00 0.00 41.09 5.19
2176 2437 0.753111 CTAGACCAAATGCCCAGGCC 60.753 60.000 6.14 0.00 41.09 5.19
2177 2438 1.387295 GCTAGACCAAATGCCCAGGC 61.387 60.000 0.38 0.38 42.35 4.85
2178 2439 0.257039 AGCTAGACCAAATGCCCAGG 59.743 55.000 0.00 0.00 0.00 4.45
2179 2440 1.065199 TCAGCTAGACCAAATGCCCAG 60.065 52.381 0.00 0.00 0.00 4.45
2180 2441 0.991146 TCAGCTAGACCAAATGCCCA 59.009 50.000 0.00 0.00 0.00 5.36
2181 2442 1.065126 ACTCAGCTAGACCAAATGCCC 60.065 52.381 0.00 0.00 0.00 5.36
2182 2443 2.284190 GACTCAGCTAGACCAAATGCC 58.716 52.381 0.00 0.00 0.00 4.40
2183 2444 1.929836 CGACTCAGCTAGACCAAATGC 59.070 52.381 0.00 0.00 0.00 3.56
2184 2445 3.182967 GTCGACTCAGCTAGACCAAATG 58.817 50.000 8.70 0.00 0.00 2.32
2185 2446 3.512033 GTCGACTCAGCTAGACCAAAT 57.488 47.619 8.70 0.00 0.00 2.32
2190 2451 1.025647 ACCGGTCGACTCAGCTAGAC 61.026 60.000 16.46 0.00 0.00 2.59
2191 2452 0.322277 AACCGGTCGACTCAGCTAGA 60.322 55.000 16.46 0.00 0.00 2.43
2192 2453 1.331138 CTAACCGGTCGACTCAGCTAG 59.669 57.143 16.46 0.00 0.00 3.42
2193 2454 1.376543 CTAACCGGTCGACTCAGCTA 58.623 55.000 16.46 0.00 0.00 3.32
2194 2455 1.313812 CCTAACCGGTCGACTCAGCT 61.314 60.000 16.46 0.00 0.00 4.24
2195 2456 1.139095 CCTAACCGGTCGACTCAGC 59.861 63.158 16.46 0.00 0.00 4.26
2196 2457 2.564471 ACCTAACCGGTCGACTCAG 58.436 57.895 16.46 6.98 44.93 3.35
2197 2458 4.828409 ACCTAACCGGTCGACTCA 57.172 55.556 16.46 0.00 44.93 3.41
2205 2466 1.547472 AACCCGAGGAACCTAACCGG 61.547 60.000 0.00 0.00 39.85 5.28
2206 2467 1.185315 TAACCCGAGGAACCTAACCG 58.815 55.000 0.00 0.00 0.00 4.44
2207 2468 3.198417 TCAATAACCCGAGGAACCTAACC 59.802 47.826 0.00 0.00 0.00 2.85
2208 2469 4.161001 TCTCAATAACCCGAGGAACCTAAC 59.839 45.833 0.00 0.00 0.00 2.34
2209 2470 4.355549 TCTCAATAACCCGAGGAACCTAA 58.644 43.478 0.00 0.00 0.00 2.69
2210 2471 3.985127 TCTCAATAACCCGAGGAACCTA 58.015 45.455 0.00 0.00 0.00 3.08
2211 2472 2.829023 TCTCAATAACCCGAGGAACCT 58.171 47.619 0.00 0.00 0.00 3.50
2212 2473 3.622166 TTCTCAATAACCCGAGGAACC 57.378 47.619 0.00 0.00 0.00 3.62
2213 2474 5.233689 CGTATTTCTCAATAACCCGAGGAAC 59.766 44.000 0.00 0.00 29.53 3.62
2214 2475 5.353938 CGTATTTCTCAATAACCCGAGGAA 58.646 41.667 0.00 0.00 31.36 3.36
2215 2476 4.202182 CCGTATTTCTCAATAACCCGAGGA 60.202 45.833 0.00 0.00 0.00 3.71
2216 2477 4.056050 CCGTATTTCTCAATAACCCGAGG 58.944 47.826 0.00 0.00 0.00 4.63
2217 2478 4.690122 ACCGTATTTCTCAATAACCCGAG 58.310 43.478 0.00 0.00 0.00 4.63
2218 2479 4.741321 ACCGTATTTCTCAATAACCCGA 57.259 40.909 0.00 0.00 0.00 5.14
2219 2480 6.702723 TGATAACCGTATTTCTCAATAACCCG 59.297 38.462 0.00 0.00 0.00 5.28
2220 2481 8.441312 TTGATAACCGTATTTCTCAATAACCC 57.559 34.615 0.00 0.00 0.00 4.11
2232 2493 8.717821 CGGTCATGAATATTTGATAACCGTATT 58.282 33.333 12.14 0.00 29.40 1.89
2233 2494 8.092068 TCGGTCATGAATATTTGATAACCGTAT 58.908 33.333 16.84 0.00 33.33 3.06
2234 2495 7.435305 TCGGTCATGAATATTTGATAACCGTA 58.565 34.615 16.84 6.91 33.33 4.02
2235 2496 6.285224 TCGGTCATGAATATTTGATAACCGT 58.715 36.000 16.84 0.00 33.33 4.83
2236 2497 6.779115 TCGGTCATGAATATTTGATAACCG 57.221 37.500 13.43 13.43 33.02 4.44
2237 2498 7.413000 CCGATCGGTCATGAATATTTGATAACC 60.413 40.741 26.35 0.00 0.00 2.85
2238 2499 7.456253 CCGATCGGTCATGAATATTTGATAAC 58.544 38.462 26.35 0.00 0.00 1.89
2239 2500 7.595311 CCGATCGGTCATGAATATTTGATAA 57.405 36.000 26.35 0.00 0.00 1.75
2256 2517 3.062639 CAGTTTCTCAAATGACCGATCGG 59.937 47.826 32.20 32.20 42.03 4.18
2257 2518 3.484229 GCAGTTTCTCAAATGACCGATCG 60.484 47.826 8.51 8.51 0.00 3.69
2258 2519 3.686726 AGCAGTTTCTCAAATGACCGATC 59.313 43.478 0.00 0.00 0.00 3.69
2259 2520 3.679389 AGCAGTTTCTCAAATGACCGAT 58.321 40.909 0.00 0.00 0.00 4.18
2260 2521 3.126001 AGCAGTTTCTCAAATGACCGA 57.874 42.857 0.00 0.00 0.00 4.69
2261 2522 4.378459 GGTTAGCAGTTTCTCAAATGACCG 60.378 45.833 0.00 0.00 0.00 4.79
2262 2523 4.518970 TGGTTAGCAGTTTCTCAAATGACC 59.481 41.667 0.00 0.00 0.00 4.02
2263 2524 5.689383 TGGTTAGCAGTTTCTCAAATGAC 57.311 39.130 0.00 0.00 0.00 3.06
2264 2525 5.241506 CCTTGGTTAGCAGTTTCTCAAATGA 59.758 40.000 0.00 0.00 0.00 2.57
2265 2526 5.464168 CCTTGGTTAGCAGTTTCTCAAATG 58.536 41.667 0.00 0.00 0.00 2.32
2266 2527 4.021981 GCCTTGGTTAGCAGTTTCTCAAAT 60.022 41.667 0.00 0.00 0.00 2.32
2267 2528 3.317993 GCCTTGGTTAGCAGTTTCTCAAA 59.682 43.478 0.00 0.00 0.00 2.69
2268 2529 2.884639 GCCTTGGTTAGCAGTTTCTCAA 59.115 45.455 0.00 0.00 0.00 3.02
2269 2530 2.106511 AGCCTTGGTTAGCAGTTTCTCA 59.893 45.455 0.00 0.00 0.00 3.27
2270 2531 2.784347 AGCCTTGGTTAGCAGTTTCTC 58.216 47.619 0.00 0.00 0.00 2.87
2271 2532 2.959465 AGCCTTGGTTAGCAGTTTCT 57.041 45.000 0.00 0.00 0.00 2.52
2272 2533 2.095718 CGAAGCCTTGGTTAGCAGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
2273 2534 1.880027 CGAAGCCTTGGTTAGCAGTTT 59.120 47.619 0.00 0.00 0.00 2.66
2274 2535 1.523758 CGAAGCCTTGGTTAGCAGTT 58.476 50.000 0.00 0.00 0.00 3.16
2275 2536 0.321653 CCGAAGCCTTGGTTAGCAGT 60.322 55.000 0.00 0.00 0.00 4.40
2276 2537 0.321653 ACCGAAGCCTTGGTTAGCAG 60.322 55.000 0.00 0.00 33.81 4.24
2277 2538 0.321298 GACCGAAGCCTTGGTTAGCA 60.321 55.000 0.00 0.00 38.99 3.49
2278 2539 0.321298 TGACCGAAGCCTTGGTTAGC 60.321 55.000 0.00 0.00 38.99 3.09
2279 2540 1.804748 GTTGACCGAAGCCTTGGTTAG 59.195 52.381 0.00 0.00 38.99 2.34
2280 2541 1.543871 GGTTGACCGAAGCCTTGGTTA 60.544 52.381 0.00 0.00 38.99 2.85
2281 2542 0.822121 GGTTGACCGAAGCCTTGGTT 60.822 55.000 0.00 0.00 38.99 3.67
2282 2543 1.228154 GGTTGACCGAAGCCTTGGT 60.228 57.895 0.00 0.00 42.42 3.67
2283 2544 0.821711 TTGGTTGACCGAAGCCTTGG 60.822 55.000 0.00 0.00 39.43 3.61
2284 2545 1.028905 TTTGGTTGACCGAAGCCTTG 58.971 50.000 0.00 0.00 39.43 3.61
2285 2546 1.770294 TTTTGGTTGACCGAAGCCTT 58.230 45.000 3.22 0.00 40.33 4.35
2286 2547 1.681264 CTTTTTGGTTGACCGAAGCCT 59.319 47.619 3.22 0.00 40.33 4.58
2287 2548 1.407618 ACTTTTTGGTTGACCGAAGCC 59.592 47.619 3.22 0.00 40.33 4.35
2288 2549 2.098443 TGACTTTTTGGTTGACCGAAGC 59.902 45.455 3.22 0.00 40.33 3.86
2289 2550 3.377172 ACTGACTTTTTGGTTGACCGAAG 59.623 43.478 3.22 6.19 40.33 3.79
2290 2551 3.349022 ACTGACTTTTTGGTTGACCGAA 58.651 40.909 0.00 0.00 39.43 4.30
2291 2552 2.993937 ACTGACTTTTTGGTTGACCGA 58.006 42.857 0.00 0.00 39.43 4.69
2292 2553 3.691498 GAACTGACTTTTTGGTTGACCG 58.309 45.455 0.00 0.00 39.43 4.79
2293 2554 3.488553 CCGAACTGACTTTTTGGTTGACC 60.489 47.826 0.00 0.00 0.00 4.02
2294 2555 3.128068 ACCGAACTGACTTTTTGGTTGAC 59.872 43.478 0.00 0.00 37.44 3.18
2295 2556 3.349022 ACCGAACTGACTTTTTGGTTGA 58.651 40.909 0.00 0.00 37.44 3.18
2296 2557 3.488553 GGACCGAACTGACTTTTTGGTTG 60.489 47.826 0.00 0.00 40.34 3.77
2297 2558 2.686405 GGACCGAACTGACTTTTTGGTT 59.314 45.455 0.00 0.00 40.34 3.67
2298 2559 2.092592 AGGACCGAACTGACTTTTTGGT 60.093 45.455 0.00 0.00 42.57 3.67
2299 2560 2.548480 GAGGACCGAACTGACTTTTTGG 59.452 50.000 0.00 0.00 34.06 3.28
2300 2561 2.221055 CGAGGACCGAACTGACTTTTTG 59.779 50.000 0.00 0.00 41.76 2.44
2301 2562 2.480845 CGAGGACCGAACTGACTTTTT 58.519 47.619 0.00 0.00 41.76 1.94
2302 2563 1.270147 CCGAGGACCGAACTGACTTTT 60.270 52.381 0.00 0.00 41.76 2.27
2303 2564 0.317479 CCGAGGACCGAACTGACTTT 59.683 55.000 0.00 0.00 41.76 2.66
2304 2565 0.826672 ACCGAGGACCGAACTGACTT 60.827 55.000 0.00 0.00 41.76 3.01
2305 2566 0.826672 AACCGAGGACCGAACTGACT 60.827 55.000 0.00 0.00 41.76 3.41
2306 2567 0.033090 AAACCGAGGACCGAACTGAC 59.967 55.000 0.00 0.00 41.76 3.51
2307 2568 1.619654 TAAACCGAGGACCGAACTGA 58.380 50.000 0.00 0.00 41.76 3.41
2308 2569 2.064014 GTTAAACCGAGGACCGAACTG 58.936 52.381 0.00 0.00 41.76 3.16
2309 2570 1.966354 AGTTAAACCGAGGACCGAACT 59.034 47.619 0.00 0.00 41.76 3.01
2310 2571 2.332104 GAGTTAAACCGAGGACCGAAC 58.668 52.381 0.00 0.00 41.76 3.95
2311 2572 1.068333 CGAGTTAAACCGAGGACCGAA 60.068 52.381 0.00 0.00 41.76 4.30
2312 2573 0.523072 CGAGTTAAACCGAGGACCGA 59.477 55.000 0.00 0.00 41.76 4.69
2313 2574 0.523072 TCGAGTTAAACCGAGGACCG 59.477 55.000 0.00 0.00 38.18 4.79
2314 2575 2.332104 GTTCGAGTTAAACCGAGGACC 58.668 52.381 0.00 0.00 36.11 4.46
2315 2576 1.981533 CGTTCGAGTTAAACCGAGGAC 59.018 52.381 0.00 0.00 36.11 3.85
2316 2577 1.879380 TCGTTCGAGTTAAACCGAGGA 59.121 47.619 0.00 1.82 36.11 3.71
2317 2578 2.336554 TCGTTCGAGTTAAACCGAGG 57.663 50.000 1.60 0.00 36.11 4.63
2318 2579 3.121227 GGTTTCGTTCGAGTTAAACCGAG 60.121 47.826 16.78 0.00 40.90 4.63
2319 2580 2.794350 GGTTTCGTTCGAGTTAAACCGA 59.206 45.455 16.78 0.00 40.90 4.69
2320 2581 3.159486 GGTTTCGTTCGAGTTAAACCG 57.841 47.619 16.78 0.00 40.90 4.44
2321 2582 2.096762 CCGGTTTCGTTCGAGTTAAACC 60.097 50.000 19.69 19.69 44.77 3.27
2322 2583 2.539688 ACCGGTTTCGTTCGAGTTAAAC 59.460 45.455 0.00 9.02 33.95 2.01
2323 2584 2.820330 ACCGGTTTCGTTCGAGTTAAA 58.180 42.857 0.00 0.00 33.95 1.52
2324 2585 2.507339 ACCGGTTTCGTTCGAGTTAA 57.493 45.000 0.00 0.00 33.95 2.01
2325 2586 2.034558 AGAACCGGTTTCGTTCGAGTTA 59.965 45.455 23.22 0.00 39.47 2.24
2326 2587 1.202452 AGAACCGGTTTCGTTCGAGTT 60.202 47.619 23.22 0.00 39.47 3.01
2327 2588 0.386838 AGAACCGGTTTCGTTCGAGT 59.613 50.000 23.22 0.00 39.47 4.18
2328 2589 1.058404 GAGAACCGGTTTCGTTCGAG 58.942 55.000 23.22 0.00 39.47 4.04
2329 2590 0.670162 AGAGAACCGGTTTCGTTCGA 59.330 50.000 23.22 0.00 39.47 3.71
2330 2591 0.782384 CAGAGAACCGGTTTCGTTCG 59.218 55.000 23.22 4.68 39.47 3.95
2331 2592 2.144482 TCAGAGAACCGGTTTCGTTC 57.856 50.000 23.22 16.12 39.47 3.95
2332 2593 2.607631 TTCAGAGAACCGGTTTCGTT 57.392 45.000 23.22 7.79 39.47 3.85
2333 2594 2.607631 TTTCAGAGAACCGGTTTCGT 57.392 45.000 23.22 9.51 39.47 3.85
2334 2595 3.746492 AGATTTTCAGAGAACCGGTTTCG 59.254 43.478 23.22 15.23 39.47 3.46
2335 2596 4.755123 TCAGATTTTCAGAGAACCGGTTTC 59.245 41.667 23.22 19.29 33.95 2.78
2336 2597 4.714632 TCAGATTTTCAGAGAACCGGTTT 58.285 39.130 23.22 11.50 0.00 3.27
2337 2598 4.319177 CTCAGATTTTCAGAGAACCGGTT 58.681 43.478 22.50 22.50 32.48 4.44
2338 2599 3.866449 GCTCAGATTTTCAGAGAACCGGT 60.866 47.826 0.00 0.00 32.48 5.28
2339 2600 2.675348 GCTCAGATTTTCAGAGAACCGG 59.325 50.000 0.00 0.00 32.48 5.28
2340 2601 3.594134 AGCTCAGATTTTCAGAGAACCG 58.406 45.455 1.58 0.00 32.48 4.44
2341 2602 5.526846 CCATAGCTCAGATTTTCAGAGAACC 59.473 44.000 0.00 0.00 32.48 3.62
2342 2603 6.601741 CCATAGCTCAGATTTTCAGAGAAC 57.398 41.667 0.00 0.00 32.48 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.