Multiple sequence alignment - TraesCS1B01G148100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G148100 chr1B 100.000 9676 0 0 1 9676 216107334 216097659 0.000000e+00 17869.0
1 TraesCS1B01G148100 chr1B 89.381 113 8 2 8792 8904 216098431 216098323 1.310000e-28 139.0
2 TraesCS1B01G148100 chr1B 89.381 113 8 2 8904 9012 216098543 216098431 1.310000e-28 139.0
3 TraesCS1B01G148100 chr1D 97.435 2222 54 2 5641 7860 94050649 94052869 0.000000e+00 3784.0
4 TraesCS1B01G148100 chr1D 96.018 1306 39 5 4353 5656 137428448 137429742 0.000000e+00 2111.0
5 TraesCS1B01G148100 chr1D 95.939 911 29 1 7859 8769 137429716 137430618 0.000000e+00 1471.0
6 TraesCS1B01G148100 chr1D 91.070 1019 56 6 2857 3875 137418633 137419616 0.000000e+00 1345.0
7 TraesCS1B01G148100 chr1D 93.612 861 31 12 841 1694 137416280 137417123 0.000000e+00 1264.0
8 TraesCS1B01G148100 chr1D 90.343 932 81 8 1910 2838 289773033 289773958 0.000000e+00 1214.0
9 TraesCS1B01G148100 chr1D 88.257 809 90 4 10 815 71763007 71763813 0.000000e+00 963.0
10 TraesCS1B01G148100 chr1D 84.837 798 113 8 21 815 362480497 362481289 0.000000e+00 797.0
11 TraesCS1B01G148100 chr1D 94.389 499 13 3 3871 4369 137427951 137428434 0.000000e+00 752.0
12 TraesCS1B01G148100 chr1D 97.849 186 3 1 1725 1910 137418444 137418628 4.360000e-83 320.0
13 TraesCS1B01G148100 chr1D 97.619 42 1 0 1683 1724 137418259 137418300 1.350000e-08 73.1
14 TraesCS1B01G148100 chr2A 97.475 2218 53 2 5645 7860 578390479 578392695 0.000000e+00 3783.0
15 TraesCS1B01G148100 chr2D 97.429 2217 54 2 5646 7860 106332701 106330486 0.000000e+00 3775.0
16 TraesCS1B01G148100 chr2D 97.211 2223 55 5 5643 7860 136426813 136424593 0.000000e+00 3755.0
17 TraesCS1B01G148100 chr2D 97.297 37 1 0 3811 3847 20802613 20802577 8.110000e-06 63.9
18 TraesCS1B01G148100 chr7D 97.471 2214 50 4 5652 7860 465340562 465338350 0.000000e+00 3773.0
19 TraesCS1B01G148100 chr7D 90.181 937 82 9 1907 2838 506499575 506498644 0.000000e+00 1212.0
20 TraesCS1B01G148100 chr7D 82.041 774 133 5 13 782 199823817 199823046 0.000000e+00 654.0
21 TraesCS1B01G148100 chr7A 97.174 2229 58 4 5635 7860 319592009 319589783 0.000000e+00 3762.0
22 TraesCS1B01G148100 chr7A 97.207 2220 58 3 5643 7860 438514891 438512674 0.000000e+00 3753.0
23 TraesCS1B01G148100 chr3A 97.296 2219 55 3 5646 7860 217717331 217719548 0.000000e+00 3760.0
24 TraesCS1B01G148100 chr5A 97.210 2222 59 2 5641 7860 23608985 23606765 0.000000e+00 3757.0
25 TraesCS1B01G148100 chr5A 76.719 640 145 4 16 653 382551847 382552484 4.300000e-93 353.0
26 TraesCS1B01G148100 chr1A 95.275 2180 92 7 3480 5656 155844070 155841899 0.000000e+00 3445.0
27 TraesCS1B01G148100 chr1A 95.963 1635 46 8 7859 9479 155841925 155840297 0.000000e+00 2636.0
28 TraesCS1B01G148100 chr1A 93.370 724 25 15 852 1556 155859010 155858291 0.000000e+00 1050.0
29 TraesCS1B01G148100 chr1A 91.884 653 51 2 2833 3485 155857530 155856880 0.000000e+00 911.0
30 TraesCS1B01G148100 chr1A 96.354 192 6 1 1725 1916 155857711 155857521 2.030000e-81 315.0
31 TraesCS1B01G148100 chr1A 97.110 173 3 2 1553 1724 155858029 155857858 3.420000e-74 291.0
32 TraesCS1B01G148100 chr1A 97.037 135 4 0 9522 9656 155840303 155840169 2.720000e-55 228.0
33 TraesCS1B01G148100 chr1A 78.797 316 58 6 3117 3426 425726082 425725770 4.580000e-48 204.0
34 TraesCS1B01G148100 chr1A 92.035 113 8 1 8792 8904 155840872 155840761 3.620000e-34 158.0
35 TraesCS1B01G148100 chr1A 88.496 113 9 2 8904 9012 155840984 155840872 6.100000e-27 134.0
36 TraesCS1B01G148100 chr5D 90.000 930 84 7 1910 2836 442674129 442673206 0.000000e+00 1194.0
37 TraesCS1B01G148100 chr5D 89.541 937 81 11 1910 2842 255084601 255083678 0.000000e+00 1171.0
38 TraesCS1B01G148100 chr5D 77.317 820 161 20 7 816 44902758 44903562 2.460000e-125 460.0
39 TraesCS1B01G148100 chr5D 100.000 28 0 0 1746 1773 564889712 564889739 1.800000e-02 52.8
40 TraesCS1B01G148100 chr3B 89.925 933 84 7 1910 2837 548054325 548053398 0.000000e+00 1194.0
41 TraesCS1B01G148100 chr3B 89.744 936 81 10 1910 2837 652963980 652963052 0.000000e+00 1182.0
42 TraesCS1B01G148100 chr3B 82.022 801 122 17 33 818 450057588 450056795 0.000000e+00 662.0
43 TraesCS1B01G148100 chr3B 75.895 419 75 14 2859 3264 488132996 488132591 3.570000e-44 191.0
44 TraesCS1B01G148100 chr3B 73.934 422 97 12 213 629 674438397 674438810 3.620000e-34 158.0
45 TraesCS1B01G148100 chr3B 83.108 148 14 6 2855 3002 775632683 775632819 3.670000e-24 124.0
46 TraesCS1B01G148100 chr5B 89.818 933 87 6 1910 2838 686410473 686409545 0.000000e+00 1190.0
47 TraesCS1B01G148100 chr5B 79.014 791 144 15 35 818 704122036 704121261 1.110000e-143 521.0
48 TraesCS1B01G148100 chr3D 89.903 931 77 10 1910 2837 491992985 491992069 0.000000e+00 1182.0
49 TraesCS1B01G148100 chr3D 85.714 812 86 12 10 816 50837675 50836889 0.000000e+00 830.0
50 TraesCS1B01G148100 chr3D 85.075 134 17 3 2860 2992 374286610 374286479 6.100000e-27 134.0
51 TraesCS1B01G148100 chr4D 89.524 945 78 19 1907 2839 170247529 170248464 0.000000e+00 1177.0
52 TraesCS1B01G148100 chr2B 85.767 815 101 12 8 817 27053917 27053113 0.000000e+00 848.0
53 TraesCS1B01G148100 chr6B 81.327 814 142 8 7 813 33723276 33724086 0.000000e+00 652.0
54 TraesCS1B01G148100 chrUn 97.297 37 1 0 3811 3847 301567578 301567542 8.110000e-06 63.9
55 TraesCS1B01G148100 chrUn 100.000 34 0 0 3811 3844 324240063 324240096 8.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G148100 chr1B 216097659 216107334 9675 True 17869.000000 17869 100.000000 1 9676 1 chr1B.!!$R1 9675
1 TraesCS1B01G148100 chr1D 94050649 94052869 2220 False 3784.000000 3784 97.435000 5641 7860 1 chr1D.!!$F2 2219
2 TraesCS1B01G148100 chr1D 137427951 137430618 2667 False 1444.666667 2111 95.448667 3871 8769 3 chr1D.!!$F6 4898
3 TraesCS1B01G148100 chr1D 289773033 289773958 925 False 1214.000000 1214 90.343000 1910 2838 1 chr1D.!!$F3 928
4 TraesCS1B01G148100 chr1D 71763007 71763813 806 False 963.000000 963 88.257000 10 815 1 chr1D.!!$F1 805
5 TraesCS1B01G148100 chr1D 362480497 362481289 792 False 797.000000 797 84.837000 21 815 1 chr1D.!!$F4 794
6 TraesCS1B01G148100 chr1D 137416280 137419616 3336 False 750.525000 1345 95.037500 841 3875 4 chr1D.!!$F5 3034
7 TraesCS1B01G148100 chr2A 578390479 578392695 2216 False 3783.000000 3783 97.475000 5645 7860 1 chr2A.!!$F1 2215
8 TraesCS1B01G148100 chr2D 106330486 106332701 2215 True 3775.000000 3775 97.429000 5646 7860 1 chr2D.!!$R2 2214
9 TraesCS1B01G148100 chr2D 136424593 136426813 2220 True 3755.000000 3755 97.211000 5643 7860 1 chr2D.!!$R3 2217
10 TraesCS1B01G148100 chr7D 465338350 465340562 2212 True 3773.000000 3773 97.471000 5652 7860 1 chr7D.!!$R2 2208
11 TraesCS1B01G148100 chr7D 506498644 506499575 931 True 1212.000000 1212 90.181000 1907 2838 1 chr7D.!!$R3 931
12 TraesCS1B01G148100 chr7D 199823046 199823817 771 True 654.000000 654 82.041000 13 782 1 chr7D.!!$R1 769
13 TraesCS1B01G148100 chr7A 319589783 319592009 2226 True 3762.000000 3762 97.174000 5635 7860 1 chr7A.!!$R1 2225
14 TraesCS1B01G148100 chr7A 438512674 438514891 2217 True 3753.000000 3753 97.207000 5643 7860 1 chr7A.!!$R2 2217
15 TraesCS1B01G148100 chr3A 217717331 217719548 2217 False 3760.000000 3760 97.296000 5646 7860 1 chr3A.!!$F1 2214
16 TraesCS1B01G148100 chr5A 23606765 23608985 2220 True 3757.000000 3757 97.210000 5641 7860 1 chr5A.!!$R1 2219
17 TraesCS1B01G148100 chr5A 382551847 382552484 637 False 353.000000 353 76.719000 16 653 1 chr5A.!!$F1 637
18 TraesCS1B01G148100 chr1A 155840169 155844070 3901 True 1320.200000 3445 93.761200 3480 9656 5 chr1A.!!$R2 6176
19 TraesCS1B01G148100 chr1A 155856880 155859010 2130 True 641.750000 1050 94.679500 852 3485 4 chr1A.!!$R3 2633
20 TraesCS1B01G148100 chr5D 442673206 442674129 923 True 1194.000000 1194 90.000000 1910 2836 1 chr5D.!!$R2 926
21 TraesCS1B01G148100 chr5D 255083678 255084601 923 True 1171.000000 1171 89.541000 1910 2842 1 chr5D.!!$R1 932
22 TraesCS1B01G148100 chr5D 44902758 44903562 804 False 460.000000 460 77.317000 7 816 1 chr5D.!!$F1 809
23 TraesCS1B01G148100 chr3B 548053398 548054325 927 True 1194.000000 1194 89.925000 1910 2837 1 chr3B.!!$R3 927
24 TraesCS1B01G148100 chr3B 652963052 652963980 928 True 1182.000000 1182 89.744000 1910 2837 1 chr3B.!!$R4 927
25 TraesCS1B01G148100 chr3B 450056795 450057588 793 True 662.000000 662 82.022000 33 818 1 chr3B.!!$R1 785
26 TraesCS1B01G148100 chr5B 686409545 686410473 928 True 1190.000000 1190 89.818000 1910 2838 1 chr5B.!!$R1 928
27 TraesCS1B01G148100 chr5B 704121261 704122036 775 True 521.000000 521 79.014000 35 818 1 chr5B.!!$R2 783
28 TraesCS1B01G148100 chr3D 491992069 491992985 916 True 1182.000000 1182 89.903000 1910 2837 1 chr3D.!!$R3 927
29 TraesCS1B01G148100 chr3D 50836889 50837675 786 True 830.000000 830 85.714000 10 816 1 chr3D.!!$R1 806
30 TraesCS1B01G148100 chr4D 170247529 170248464 935 False 1177.000000 1177 89.524000 1907 2839 1 chr4D.!!$F1 932
31 TraesCS1B01G148100 chr2B 27053113 27053917 804 True 848.000000 848 85.767000 8 817 1 chr2B.!!$R1 809
32 TraesCS1B01G148100 chr6B 33723276 33724086 810 False 652.000000 652 81.327000 7 813 1 chr6B.!!$F1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 823 0.033405 AACCCTAGTCGCCAGAGCTA 60.033 55.000 0.00 0.00 36.60 3.32 F
835 860 0.472352 AACCTCCTTCCCCGTGTACA 60.472 55.000 0.00 0.00 0.00 2.90 F
2255 3874 1.123928 GGTGGATGAGGGAGACGATT 58.876 55.000 0.00 0.00 0.00 3.34 F
2971 4622 0.752009 CCTCTCCCACTCCGATTCGA 60.752 60.000 7.83 0.00 0.00 3.71 F
3490 5147 0.616111 GGAGGAGGAGGAAGCACTGA 60.616 60.000 0.00 0.00 0.00 3.41 F
3579 5236 1.270839 CGACTGGATCCGGCCATTATT 60.271 52.381 21.17 0.00 37.30 1.40 F
3896 5553 1.340399 CCTGTGCTATCTCCAGCCCA 61.340 60.000 0.00 0.00 41.04 5.36 F
5129 6818 2.269940 GATACCACCCTCCTATGGCAT 58.730 52.381 4.88 4.88 39.84 4.40 F
5918 7611 0.620556 CTGGAGCTTTTGGAGGCCTA 59.379 55.000 4.42 0.00 0.00 3.93 F
6918 8619 1.186200 AGCGGTGCTCAATGACTCTA 58.814 50.000 0.00 0.00 30.62 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 3863 1.633774 ACACACTCAATCGTCTCCCT 58.366 50.000 0.00 0.00 0.00 4.20 R
2458 4082 1.892209 ACACCAACCGGCTAGAAAAG 58.108 50.000 0.00 0.00 34.57 2.27 R
3331 4988 0.383231 GCATTGGATTGGCTCCTTCG 59.617 55.000 0.00 0.00 45.21 3.79 R
3896 5553 1.151450 CAGGTCCAAACAGCACCCT 59.849 57.895 0.00 0.00 0.00 4.34 R
4681 6370 1.280133 CCATCTGGTTCAAGAGAGGCA 59.720 52.381 0.00 0.00 0.00 4.75 R
5242 6931 1.343069 GGCCGGGAACAGATCTAGAT 58.657 55.000 4.47 4.47 0.00 1.98 R
5368 7057 5.128827 AGAATATGTTTACAAGAGCGAGGGA 59.871 40.000 0.00 0.00 0.00 4.20 R
6055 7748 0.249398 GTTAGGTGTGGCGGAGATGT 59.751 55.000 0.00 0.00 0.00 3.06 R
7015 8716 1.066143 GCCAGAAGAATGGAGACGGAA 60.066 52.381 0.00 0.00 43.57 4.30 R
8764 10505 1.135721 GGTAAGTAGGTACACAGCCGG 59.864 57.143 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 173 2.624364 TGGCTACGTCAAGAGTAACACA 59.376 45.455 0.00 0.00 0.00 3.72
169 182 2.047274 AGTAACACAGGCGCGCAT 60.047 55.556 34.42 26.01 0.00 4.73
299 320 1.562672 GGGCCCAGACCTTCAGCTTA 61.563 60.000 19.95 0.00 0.00 3.09
308 329 6.173339 CCAGACCTTCAGCTTATCAAACTTA 58.827 40.000 0.00 0.00 0.00 2.24
319 340 7.116376 CAGCTTATCAAACTTAAGTTCTGACGA 59.884 37.037 20.78 12.48 37.25 4.20
347 368 2.670414 GCAGTCGTCAAAATCAGAGAGG 59.330 50.000 0.00 0.00 0.00 3.69
374 395 2.533266 GCATTCTTGCTTATGTGCCAC 58.467 47.619 0.00 0.00 45.77 5.01
375 396 2.094597 GCATTCTTGCTTATGTGCCACA 60.095 45.455 0.00 0.00 45.77 4.17
395 416 2.028658 CAGAGATCCATCCCATACACGG 60.029 54.545 0.00 0.00 0.00 4.94
454 475 5.639506 ACATGTTTTCTCCAGTGATACGAAG 59.360 40.000 0.00 0.00 0.00 3.79
465 486 0.967662 GATACGAAGGACTAGCCCCC 59.032 60.000 0.00 0.00 37.37 5.40
515 536 3.676291 TTCGAGATGGTGTTGATGTGA 57.324 42.857 0.00 0.00 0.00 3.58
626 647 1.205655 TCCTCCGAGATGTCAAGCTTG 59.794 52.381 20.81 20.81 0.00 4.01
635 656 1.761449 TGTCAAGCTTGCCAAGTTGA 58.239 45.000 21.99 14.38 0.00 3.18
641 662 0.449388 GCTTGCCAAGTTGATCCTCG 59.551 55.000 6.28 0.00 0.00 4.63
647 668 0.173481 CAAGTTGATCCTCGAGGCGA 59.827 55.000 27.39 11.33 34.44 5.54
682 703 3.479269 CGACAACGCCTCCTTCGC 61.479 66.667 0.00 0.00 0.00 4.70
798 823 0.033405 AACCCTAGTCGCCAGAGCTA 60.033 55.000 0.00 0.00 36.60 3.32
801 826 2.158505 ACCCTAGTCGCCAGAGCTATTA 60.159 50.000 0.00 0.00 36.60 0.98
802 827 2.490115 CCCTAGTCGCCAGAGCTATTAG 59.510 54.545 0.00 0.00 36.60 1.73
803 828 2.490115 CCTAGTCGCCAGAGCTATTAGG 59.510 54.545 0.00 0.00 37.66 2.69
804 829 1.333177 AGTCGCCAGAGCTATTAGGG 58.667 55.000 0.00 0.00 36.60 3.53
805 830 1.041437 GTCGCCAGAGCTATTAGGGT 58.959 55.000 0.00 0.00 36.60 4.34
806 831 1.413077 GTCGCCAGAGCTATTAGGGTT 59.587 52.381 0.00 0.00 36.60 4.11
807 832 2.116238 TCGCCAGAGCTATTAGGGTTT 58.884 47.619 0.00 0.00 36.60 3.27
808 833 2.102588 TCGCCAGAGCTATTAGGGTTTC 59.897 50.000 0.00 0.00 36.60 2.78
809 834 2.484889 GCCAGAGCTATTAGGGTTTCG 58.515 52.381 0.00 0.00 35.50 3.46
810 835 2.807108 GCCAGAGCTATTAGGGTTTCGG 60.807 54.545 0.00 0.00 35.50 4.30
811 836 2.698797 CCAGAGCTATTAGGGTTTCGGA 59.301 50.000 0.00 0.00 0.00 4.55
812 837 3.134081 CCAGAGCTATTAGGGTTTCGGAA 59.866 47.826 0.00 0.00 0.00 4.30
813 838 4.383770 CCAGAGCTATTAGGGTTTCGGAAA 60.384 45.833 0.00 0.00 0.00 3.13
814 839 5.183228 CAGAGCTATTAGGGTTTCGGAAAA 58.817 41.667 4.46 0.00 0.00 2.29
815 840 5.646360 CAGAGCTATTAGGGTTTCGGAAAAA 59.354 40.000 4.46 0.00 0.00 1.94
831 856 3.432262 AAAAACCTCCTTCCCCGTG 57.568 52.632 0.00 0.00 0.00 4.94
832 857 0.554305 AAAAACCTCCTTCCCCGTGT 59.446 50.000 0.00 0.00 0.00 4.49
833 858 1.437397 AAAACCTCCTTCCCCGTGTA 58.563 50.000 0.00 0.00 0.00 2.90
834 859 0.689055 AAACCTCCTTCCCCGTGTAC 59.311 55.000 0.00 0.00 0.00 2.90
835 860 0.472352 AACCTCCTTCCCCGTGTACA 60.472 55.000 0.00 0.00 0.00 2.90
836 861 1.190178 ACCTCCTTCCCCGTGTACAC 61.190 60.000 16.32 16.32 0.00 2.90
848 873 2.667473 GTGTACACGCTTACCTCCAT 57.333 50.000 10.84 0.00 0.00 3.41
849 874 2.537401 GTGTACACGCTTACCTCCATC 58.463 52.381 10.84 0.00 0.00 3.51
850 875 2.165845 GTGTACACGCTTACCTCCATCT 59.834 50.000 10.84 0.00 0.00 2.90
862 887 7.280205 CGCTTACCTCCATCTAAAATACTTGTT 59.720 37.037 0.00 0.00 0.00 2.83
863 888 8.398665 GCTTACCTCCATCTAAAATACTTGTTG 58.601 37.037 0.00 0.00 0.00 3.33
864 889 9.667107 CTTACCTCCATCTAAAATACTTGTTGA 57.333 33.333 0.00 0.00 0.00 3.18
888 913 9.014297 TGAAGAAATTTCTCCTCCAAGTATTTC 57.986 33.333 20.71 10.25 36.28 2.17
894 919 2.500098 CTCCTCCAAGTATTTCCGGACA 59.500 50.000 1.83 0.00 0.00 4.02
946 987 1.741528 ACGTCCCGTTTTTGACACTT 58.258 45.000 0.00 0.00 36.35 3.16
947 988 2.903798 ACGTCCCGTTTTTGACACTTA 58.096 42.857 0.00 0.00 36.35 2.24
948 989 2.867975 ACGTCCCGTTTTTGACACTTAG 59.132 45.455 0.00 0.00 36.35 2.18
949 990 2.349155 CGTCCCGTTTTTGACACTTAGC 60.349 50.000 0.00 0.00 0.00 3.09
950 991 2.031420 GTCCCGTTTTTGACACTTAGCC 60.031 50.000 0.00 0.00 0.00 3.93
951 992 2.158726 TCCCGTTTTTGACACTTAGCCT 60.159 45.455 0.00 0.00 0.00 4.58
952 993 3.071312 TCCCGTTTTTGACACTTAGCCTA 59.929 43.478 0.00 0.00 0.00 3.93
953 994 4.007659 CCCGTTTTTGACACTTAGCCTAT 58.992 43.478 0.00 0.00 0.00 2.57
954 995 5.046448 TCCCGTTTTTGACACTTAGCCTATA 60.046 40.000 0.00 0.00 0.00 1.31
955 996 5.820947 CCCGTTTTTGACACTTAGCCTATAT 59.179 40.000 0.00 0.00 0.00 0.86
1188 1232 2.741211 GTCTTGGACCCCGTTCGC 60.741 66.667 0.00 0.00 0.00 4.70
1387 1431 4.315803 CCTCGACATCTACAGGTTTGTTT 58.684 43.478 0.00 0.00 38.76 2.83
1475 1520 3.541242 TCCTTTTCCATGTGTGGGATT 57.459 42.857 0.00 0.00 46.06 3.01
1507 1554 8.207545 TCCAGTTGGCTAAACAATTGTAAAAAT 58.792 29.630 12.39 0.00 41.61 1.82
1545 1592 4.678256 AGAGAGTCATAGGTTGAACTGGA 58.322 43.478 0.00 0.00 35.70 3.86
1681 1993 4.122776 CCAGTATTGCTACTAGCCTTGTG 58.877 47.826 5.58 0.00 41.51 3.33
1870 3475 8.302515 ACTGATCTCCTAAATTTAACGGAGTA 57.697 34.615 23.13 15.06 45.00 2.59
1917 3522 8.035984 GGTGCAAATTTAGACTAGACTAGAAGT 58.964 37.037 16.55 0.00 0.00 3.01
1943 3548 2.975248 TGCTTTGCTGCGCCGTTA 60.975 55.556 4.18 0.00 35.36 3.18
2153 3772 3.882888 TGGATGTCGATATTTTTGGCTCC 59.117 43.478 0.00 0.00 0.00 4.70
2238 3857 7.893302 TGGAACTGATGGAATATTTAGTTTGGT 59.107 33.333 0.00 0.00 0.00 3.67
2244 3863 8.058235 TGATGGAATATTTAGTTTGGTGGATGA 58.942 33.333 0.00 0.00 0.00 2.92
2255 3874 1.123928 GGTGGATGAGGGAGACGATT 58.876 55.000 0.00 0.00 0.00 3.34
2302 3923 3.413327 TGCGGTTATTTGTGAGCCTTTA 58.587 40.909 0.00 0.00 0.00 1.85
2343 3966 9.098355 TGTTATGTGCTAATCAACTCATACTTC 57.902 33.333 0.00 0.00 0.00 3.01
2357 3980 8.576442 CAACTCATACTTCTGTGGGTAAATTTT 58.424 33.333 0.00 0.00 0.00 1.82
2358 3981 8.706322 ACTCATACTTCTGTGGGTAAATTTTT 57.294 30.769 0.00 0.00 0.00 1.94
2390 4013 4.015764 TGGCTACGTGTACTACATTGGTA 58.984 43.478 0.00 0.00 0.00 3.25
2413 4036 7.178628 GGTACTATAGTATCATCACATGGTGGT 59.821 40.741 16.81 0.00 31.63 4.16
2458 4082 1.724582 GGTGCACGGGGTTGATATGC 61.725 60.000 11.45 0.00 36.81 3.14
2680 4306 8.868522 TGAAGACCTCAATTAATTGTGAAGAT 57.131 30.769 24.81 6.84 38.84 2.40
2681 4307 9.958180 TGAAGACCTCAATTAATTGTGAAGATA 57.042 29.630 24.81 7.37 38.84 1.98
2810 4445 6.267471 TCAATTGATTGTGAGGCTTTTTACCT 59.733 34.615 3.38 0.00 38.43 3.08
2854 4489 7.829378 AGTAGATTTGAACTTGATTCGGTAC 57.171 36.000 0.00 0.00 40.56 3.34
2855 4490 7.383687 AGTAGATTTGAACTTGATTCGGTACA 58.616 34.615 0.00 0.00 40.56 2.90
2860 4511 6.687081 TTGAACTTGATTCGGTACAAACTT 57.313 33.333 0.00 0.00 40.56 2.66
2866 4517 6.485313 ACTTGATTCGGTACAAACTTGATTCA 59.515 34.615 0.00 0.00 0.00 2.57
2971 4622 0.752009 CCTCTCCCACTCCGATTCGA 60.752 60.000 7.83 0.00 0.00 3.71
3078 4729 3.075005 ATCCCGGCTGCGTACTGT 61.075 61.111 0.00 0.00 0.00 3.55
3380 5037 3.069980 GCCGCGGTCAGTGATCTCT 62.070 63.158 28.70 0.00 0.00 3.10
3381 5038 1.725557 GCCGCGGTCAGTGATCTCTA 61.726 60.000 28.70 0.00 0.00 2.43
3488 5145 1.684049 CGGAGGAGGAGGAAGCACT 60.684 63.158 0.00 0.00 0.00 4.40
3490 5147 0.616111 GGAGGAGGAGGAAGCACTGA 60.616 60.000 0.00 0.00 0.00 3.41
3579 5236 1.270839 CGACTGGATCCGGCCATTATT 60.271 52.381 21.17 0.00 37.30 1.40
3663 5320 1.547372 GGTGGTAAGTGAGGCGAAGTA 59.453 52.381 0.00 0.00 0.00 2.24
3776 5433 1.440618 TTGGGCTCTGGTTAGTTCCA 58.559 50.000 0.00 0.00 36.00 3.53
3788 5445 3.833070 GGTTAGTTCCAGTTCAGAGGAGA 59.167 47.826 0.00 0.00 34.91 3.71
3854 5511 4.615588 AGAGATGCCCTTAGTCTATTGC 57.384 45.455 0.00 0.00 0.00 3.56
3896 5553 1.340399 CCTGTGCTATCTCCAGCCCA 61.340 60.000 0.00 0.00 41.04 5.36
4014 5671 7.967854 CCAAGCTTTATTGATCAACGTTAATGA 59.032 33.333 11.07 0.00 31.55 2.57
4138 5795 8.454106 CGAAGATTTCATTTTTGGACTCTGTAT 58.546 33.333 0.00 0.00 0.00 2.29
4400 6089 6.209788 TGGGGTTCATGAATTTGGTAACTTAC 59.790 38.462 12.12 0.00 37.61 2.34
4452 6141 6.810911 ACACTAGTCGATAAATGAAGCTCAT 58.189 36.000 0.00 0.00 39.09 2.90
4471 6160 7.710896 AGCTCATTCTTTTAATAGCATCAACC 58.289 34.615 0.00 0.00 32.42 3.77
4549 6238 4.374707 GCTACTTCGTTGTTTGTGTAGTCG 60.375 45.833 0.00 0.00 32.50 4.18
4681 6370 8.742125 TGTAATGATCTTATTAGGGACTCCAT 57.258 34.615 0.00 0.00 41.75 3.41
4835 6524 5.452356 CCCGGACGGTGTTAAAGAGTATATT 60.452 44.000 0.73 0.00 0.00 1.28
5019 6708 3.083349 TAGGAGCCGCATGCCACT 61.083 61.111 13.15 9.68 42.71 4.00
5068 6757 6.864685 CAGAAAAGCATAATGAAGCTCAACAA 59.135 34.615 0.00 0.00 40.90 2.83
5129 6818 2.269940 GATACCACCCTCCTATGGCAT 58.730 52.381 4.88 4.88 39.84 4.40
5368 7057 4.019321 CCATCTTTCATGTATATCCCCGGT 60.019 45.833 0.00 0.00 0.00 5.28
5474 7165 9.230932 GATCTTATTAGCAAATCTTTGTTCTGC 57.769 33.333 4.71 0.00 40.24 4.26
5761 7452 1.066605 GGCACATGGATAGCAAGCTTG 59.933 52.381 22.44 22.44 0.00 4.01
5908 7601 0.745845 CCGCTATGCACTGGAGCTTT 60.746 55.000 9.31 0.00 33.91 3.51
5918 7611 0.620556 CTGGAGCTTTTGGAGGCCTA 59.379 55.000 4.42 0.00 0.00 3.93
6055 7748 4.516323 CCACACATCCATCTCAACATACA 58.484 43.478 0.00 0.00 0.00 2.29
6185 7878 1.967319 TTTGTGGCACTCTCTTGTCC 58.033 50.000 19.83 0.00 0.00 4.02
6224 7917 1.451927 GCGCCACTTCATCCATCCA 60.452 57.895 0.00 0.00 0.00 3.41
6525 8226 6.792473 ACACCATGGGATATCTCCTTGTATAA 59.208 38.462 18.09 0.00 41.74 0.98
6579 8280 4.516652 AAGATAAGGGCTCAAAGCTGAT 57.483 40.909 0.00 0.00 41.99 2.90
6636 8337 1.455786 GTGTCGACATCACTTGTTCGG 59.544 52.381 23.12 0.00 39.18 4.30
6657 8358 4.690748 CGGACACTTGTCACAACATTATCT 59.309 41.667 11.40 0.00 46.47 1.98
6709 8410 2.287009 GCTTGGACTTTGTGTTTCTCCG 60.287 50.000 0.00 0.00 0.00 4.63
6814 8515 6.191315 TGCTCCCTATATCTCTCCATAAGTC 58.809 44.000 0.00 0.00 0.00 3.01
6918 8619 1.186200 AGCGGTGCTCAATGACTCTA 58.814 50.000 0.00 0.00 30.62 2.43
6946 8647 3.136763 AGCTTCATTGTATGGCTCATCG 58.863 45.455 0.00 0.00 0.00 3.84
7008 8709 4.459337 CCCTTGTTCTTGAAGATTGGTACC 59.541 45.833 4.43 4.43 0.00 3.34
7158 8859 0.038166 TCGCCTTGCCTCCTTTCATT 59.962 50.000 0.00 0.00 0.00 2.57
7170 8871 6.041979 TGCCTCCTTTCATTCTTTTTAAAGCT 59.958 34.615 0.00 0.00 35.99 3.74
7241 8942 3.071023 TCATCAAAGGAGTCGTCCAGTTT 59.929 43.478 0.00 0.00 46.80 2.66
7248 8949 3.000727 GGAGTCGTCCAGTTTAATGGTG 58.999 50.000 0.00 0.00 43.31 4.17
7262 8963 7.175641 CAGTTTAATGGTGGAACTCTCATTCTT 59.824 37.037 0.00 0.00 36.74 2.52
7280 8981 3.565307 TCTTCCCATTGAACAGCTTGTT 58.435 40.909 1.82 1.82 44.37 2.83
7314 9015 4.322273 CGCCATCTATGCTTAATCTCCTCA 60.322 45.833 0.00 0.00 0.00 3.86
7318 9019 6.347696 CATCTATGCTTAATCTCCTCATCCC 58.652 44.000 0.00 0.00 0.00 3.85
7429 9130 0.036306 GTCCCTTTCGCCTTCCTTCA 59.964 55.000 0.00 0.00 0.00 3.02
7437 9138 1.490490 TCGCCTTCCTTCATGCCTAAT 59.510 47.619 0.00 0.00 0.00 1.73
7850 9551 3.250744 CACGAATCTGAAAGCGGAAGTA 58.749 45.455 0.00 0.00 32.06 2.24
7860 9561 0.396811 AGCGGAAGTAAGCAACCACT 59.603 50.000 0.00 0.00 35.48 4.00
7879 9580 9.383519 CAACCACTGTAAAATCTATACATCACT 57.616 33.333 0.00 0.00 33.12 3.41
8118 9830 1.183676 AGGGCCTCAGCTTTTTGCAG 61.184 55.000 0.00 0.00 45.94 4.41
8124 9836 2.415625 CCTCAGCTTTTTGCAGCATCTC 60.416 50.000 0.00 0.00 45.94 2.75
8177 9889 8.529476 GGGTATACCGTCATGAGAATTATACTT 58.471 37.037 15.80 0.00 36.71 2.24
8289 10002 8.597167 TCTTCAAAGATCCTCTCAGTAAATTCA 58.403 33.333 0.00 0.00 0.00 2.57
8330 10043 2.281070 ATATTCTGGGCGCTGCGG 60.281 61.111 24.61 6.94 0.00 5.69
8396 10110 4.322049 GCTACTATATGGCAACCAGTCGAT 60.322 45.833 0.00 0.00 36.75 3.59
8542 10283 5.426185 AGGTGGATAATGTTGCCATGAATTT 59.574 36.000 0.00 0.00 33.66 1.82
8588 10329 2.032675 TGTCGAAGAGCTCATCAGATCG 59.967 50.000 17.77 14.53 40.26 3.69
8682 10423 4.757149 GGACATGGATGAGGTAATAACTGC 59.243 45.833 0.00 0.00 0.00 4.40
8697 10438 3.340814 AACTGCTGTCAGACCTTATGG 57.659 47.619 3.32 0.00 42.95 2.74
8730 10471 3.316283 GCGAAATGCTGATGTTTCCAAA 58.684 40.909 0.00 0.00 41.73 3.28
8764 10505 3.443099 AGTGTTTGCCTTTCTGCTTTC 57.557 42.857 0.00 0.00 0.00 2.62
8802 10543 2.919856 ACTGAGCAGTGGCCTCGT 60.920 61.111 3.32 0.00 40.75 4.18
8891 10632 5.069781 TCCTTATTTTGTTGTTGTTGAGGGG 59.930 40.000 0.00 0.00 0.00 4.79
9048 10792 3.914364 GGAAAGCTGTATTTGACTTTGCG 59.086 43.478 0.00 0.00 32.16 4.85
9067 10811 2.483876 CGTGTTGACTTGACAGACCAT 58.516 47.619 0.00 0.00 0.00 3.55
9068 10812 2.872245 CGTGTTGACTTGACAGACCATT 59.128 45.455 0.00 0.00 0.00 3.16
9133 10877 9.567848 GTTTTTGTTAACTTGTCAGATCAAGAA 57.432 29.630 15.56 4.96 45.11 2.52
9145 10889 5.639506 GTCAGATCAAGAACCTTGATTCGAA 59.360 40.000 19.43 0.00 39.08 3.71
9146 10890 5.639506 TCAGATCAAGAACCTTGATTCGAAC 59.360 40.000 19.43 9.38 39.08 3.95
9160 10905 4.750598 TGATTCGAACGGTGTGATGTTTTA 59.249 37.500 0.00 0.00 0.00 1.52
9190 10935 1.252904 ATTTGCTTGCGGTGATGCCT 61.253 50.000 0.00 0.00 34.25 4.75
9191 10936 1.462731 TTTGCTTGCGGTGATGCCTT 61.463 50.000 0.00 0.00 34.25 4.35
9192 10937 1.462731 TTGCTTGCGGTGATGCCTTT 61.463 50.000 0.00 0.00 34.25 3.11
9193 10938 1.290009 GCTTGCGGTGATGCCTTTT 59.710 52.632 0.00 0.00 34.25 2.27
9194 10939 0.319813 GCTTGCGGTGATGCCTTTTT 60.320 50.000 0.00 0.00 34.25 1.94
9257 11002 5.393352 GCCATGCAAATCTGTCATTCAAGTA 60.393 40.000 0.00 0.00 0.00 2.24
9317 11062 0.999712 CCAGTACCTCCCCACCATTT 59.000 55.000 0.00 0.00 0.00 2.32
9337 11082 7.619302 ACCATTTCATAGCATCTCCCTTTTAAA 59.381 33.333 0.00 0.00 0.00 1.52
9343 11088 7.499232 TCATAGCATCTCCCTTTTAAAGTAAGC 59.501 37.037 3.91 0.02 0.00 3.09
9458 11204 4.562143 GCAAATTCAGGGATGTTGAGCTTT 60.562 41.667 0.00 0.00 0.00 3.51
9475 11221 4.379652 AGCTTTGCAGGTTTAACAATTGG 58.620 39.130 10.83 0.00 0.00 3.16
9479 11225 4.052159 TGCAGGTTTAACAATTGGTGTG 57.948 40.909 6.16 0.00 40.60 3.82
9480 11226 3.449018 TGCAGGTTTAACAATTGGTGTGT 59.551 39.130 6.16 0.00 40.60 3.72
9481 11227 4.081420 TGCAGGTTTAACAATTGGTGTGTT 60.081 37.500 6.16 0.00 40.60 3.32
9482 11228 4.873259 GCAGGTTTAACAATTGGTGTGTTT 59.127 37.500 6.16 0.00 40.60 2.83
9483 11229 5.006261 GCAGGTTTAACAATTGGTGTGTTTC 59.994 40.000 6.16 0.00 40.60 2.78
9484 11230 6.337356 CAGGTTTAACAATTGGTGTGTTTCT 58.663 36.000 6.16 0.00 40.60 2.52
9485 11231 7.484975 CAGGTTTAACAATTGGTGTGTTTCTA 58.515 34.615 6.16 0.00 40.60 2.10
9486 11232 7.434013 CAGGTTTAACAATTGGTGTGTTTCTAC 59.566 37.037 6.16 0.00 40.60 2.59
9487 11233 6.698329 GGTTTAACAATTGGTGTGTTTCTACC 59.302 38.462 6.16 0.05 40.60 3.18
9488 11234 7.259161 GTTTAACAATTGGTGTGTTTCTACCA 58.741 34.615 6.16 0.00 44.79 3.25
9493 11239 3.290948 TGGTGTGTTTCTACCAAGCTT 57.709 42.857 0.00 0.00 43.60 3.74
9494 11240 3.211045 TGGTGTGTTTCTACCAAGCTTC 58.789 45.455 0.00 0.00 43.60 3.86
9495 11241 3.211045 GGTGTGTTTCTACCAAGCTTCA 58.789 45.455 0.00 0.00 36.94 3.02
9496 11242 3.821033 GGTGTGTTTCTACCAAGCTTCAT 59.179 43.478 0.00 0.00 36.94 2.57
9497 11243 4.278419 GGTGTGTTTCTACCAAGCTTCATT 59.722 41.667 0.00 0.00 36.94 2.57
9498 11244 5.221244 GGTGTGTTTCTACCAAGCTTCATTT 60.221 40.000 0.00 0.00 36.94 2.32
9499 11245 5.687285 GTGTGTTTCTACCAAGCTTCATTTG 59.313 40.000 0.00 0.00 0.00 2.32
9504 11250 3.826637 CCAAGCTTCATTTGGCCAG 57.173 52.632 5.11 0.00 38.73 4.85
9505 11251 0.971386 CCAAGCTTCATTTGGCCAGT 59.029 50.000 5.11 0.00 38.73 4.00
9506 11252 1.337447 CCAAGCTTCATTTGGCCAGTG 60.337 52.381 5.11 9.85 38.73 3.66
9507 11253 1.342174 CAAGCTTCATTTGGCCAGTGT 59.658 47.619 5.11 0.00 0.00 3.55
9508 11254 1.708341 AGCTTCATTTGGCCAGTGTT 58.292 45.000 5.11 0.00 0.00 3.32
9509 11255 2.041701 AGCTTCATTTGGCCAGTGTTT 58.958 42.857 5.11 0.00 0.00 2.83
9510 11256 2.435437 AGCTTCATTTGGCCAGTGTTTT 59.565 40.909 5.11 0.00 0.00 2.43
9511 11257 2.802247 GCTTCATTTGGCCAGTGTTTTC 59.198 45.455 5.11 0.00 0.00 2.29
9512 11258 3.392882 CTTCATTTGGCCAGTGTTTTCC 58.607 45.455 5.11 0.00 0.00 3.13
9513 11259 2.392662 TCATTTGGCCAGTGTTTTCCA 58.607 42.857 5.11 0.00 0.00 3.53
9514 11260 2.971330 TCATTTGGCCAGTGTTTTCCAT 59.029 40.909 5.11 0.00 0.00 3.41
9515 11261 3.390639 TCATTTGGCCAGTGTTTTCCATT 59.609 39.130 5.11 0.00 0.00 3.16
9516 11262 3.467374 TTTGGCCAGTGTTTTCCATTC 57.533 42.857 5.11 0.00 0.00 2.67
9517 11263 2.380064 TGGCCAGTGTTTTCCATTCT 57.620 45.000 0.00 0.00 0.00 2.40
9518 11264 2.238521 TGGCCAGTGTTTTCCATTCTC 58.761 47.619 0.00 0.00 0.00 2.87
9519 11265 2.158475 TGGCCAGTGTTTTCCATTCTCT 60.158 45.455 0.00 0.00 0.00 3.10
9520 11266 2.489722 GGCCAGTGTTTTCCATTCTCTC 59.510 50.000 0.00 0.00 0.00 3.20
9521 11267 3.416156 GCCAGTGTTTTCCATTCTCTCT 58.584 45.455 0.00 0.00 0.00 3.10
9522 11268 3.823304 GCCAGTGTTTTCCATTCTCTCTT 59.177 43.478 0.00 0.00 0.00 2.85
9523 11269 4.320788 GCCAGTGTTTTCCATTCTCTCTTG 60.321 45.833 0.00 0.00 0.00 3.02
9524 11270 4.823989 CCAGTGTTTTCCATTCTCTCTTGT 59.176 41.667 0.00 0.00 0.00 3.16
9525 11271 5.300286 CCAGTGTTTTCCATTCTCTCTTGTT 59.700 40.000 0.00 0.00 0.00 2.83
9526 11272 6.204359 CAGTGTTTTCCATTCTCTCTTGTTG 58.796 40.000 0.00 0.00 0.00 3.33
9527 11273 5.888161 AGTGTTTTCCATTCTCTCTTGTTGT 59.112 36.000 0.00 0.00 0.00 3.32
9587 11333 3.928727 ACCATTGTCTGAACAGCAATG 57.071 42.857 25.82 25.82 43.84 2.82
9656 11402 0.112412 GACCAACATGGGGGTGTCTT 59.888 55.000 14.48 0.00 43.37 3.01
9657 11403 0.112412 ACCAACATGGGGGTGTCTTC 59.888 55.000 9.50 0.00 43.37 2.87
9659 11405 1.247567 CAACATGGGGGTGTCTTCAC 58.752 55.000 0.00 0.00 43.19 3.18
9660 11406 1.149101 AACATGGGGGTGTCTTCACT 58.851 50.000 0.00 0.00 43.41 3.41
9661 11407 1.149101 ACATGGGGGTGTCTTCACTT 58.851 50.000 0.00 0.00 43.41 3.16
9662 11408 1.073923 ACATGGGGGTGTCTTCACTTC 59.926 52.381 0.00 0.00 43.41 3.01
9663 11409 0.698818 ATGGGGGTGTCTTCACTTCC 59.301 55.000 0.00 0.00 43.41 3.46
9664 11410 0.401395 TGGGGGTGTCTTCACTTCCT 60.401 55.000 0.00 0.00 43.41 3.36
9665 11411 0.771755 GGGGGTGTCTTCACTTCCTT 59.228 55.000 0.00 0.00 43.41 3.36
9666 11412 1.545651 GGGGGTGTCTTCACTTCCTTG 60.546 57.143 0.00 0.00 43.41 3.61
9667 11413 1.545651 GGGGTGTCTTCACTTCCTTGG 60.546 57.143 0.00 0.00 43.41 3.61
9668 11414 1.239347 GGTGTCTTCACTTCCTTGGC 58.761 55.000 0.00 0.00 43.41 4.52
9669 11415 1.476833 GGTGTCTTCACTTCCTTGGCA 60.477 52.381 0.00 0.00 43.41 4.92
9670 11416 1.876156 GTGTCTTCACTTCCTTGGCAG 59.124 52.381 0.00 0.00 40.98 4.85
9671 11417 1.490490 TGTCTTCACTTCCTTGGCAGT 59.510 47.619 0.00 0.00 0.00 4.40
9672 11418 1.876156 GTCTTCACTTCCTTGGCAGTG 59.124 52.381 12.17 12.17 41.65 3.66
9673 11419 1.490490 TCTTCACTTCCTTGGCAGTGT 59.510 47.619 16.55 0.00 41.16 3.55
9674 11420 1.605710 CTTCACTTCCTTGGCAGTGTG 59.394 52.381 16.55 9.10 41.16 3.82
9675 11421 0.836606 TCACTTCCTTGGCAGTGTGA 59.163 50.000 16.55 8.74 41.16 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.922447 ACTCCAATCTGGTATGCCCAA 59.078 47.619 0.00 0.00 44.65 4.12
19 20 1.681327 GGCCGTCTAGGTCACTCCA 60.681 63.158 0.00 0.00 46.14 3.86
169 182 0.030195 TGATCATGGGGGAGGCTACA 60.030 55.000 0.00 0.00 0.00 2.74
299 320 5.177696 GTGCTCGTCAGAACTTAAGTTTGAT 59.822 40.000 21.40 8.76 38.56 2.57
308 329 1.151668 GCATGTGCTCGTCAGAACTT 58.848 50.000 0.00 0.00 38.21 2.66
319 340 1.308047 TTTTGACGACTGCATGTGCT 58.692 45.000 6.55 0.00 42.66 4.40
374 395 2.028658 CCGTGTATGGGATGGATCTCTG 60.029 54.545 0.00 0.00 0.00 3.35
375 396 2.251818 CCGTGTATGGGATGGATCTCT 58.748 52.381 0.00 0.00 0.00 3.10
395 416 1.332178 CAACGAAGCGAGACAGAGAC 58.668 55.000 0.00 0.00 0.00 3.36
581 602 0.872021 CGACGCCCTTGATGCTAGAC 60.872 60.000 0.00 0.00 0.00 2.59
626 647 1.092345 GCCTCGAGGATCAACTTGGC 61.092 60.000 35.69 12.63 37.39 4.52
723 744 2.508663 GCGCACCGGAGTTCCTAC 60.509 66.667 9.46 0.00 0.00 3.18
724 745 3.766691 GGCGCACCGGAGTTCCTA 61.767 66.667 9.46 0.00 0.00 2.94
813 838 0.554305 ACACGGGGAAGGAGGTTTTT 59.446 50.000 0.00 0.00 0.00 1.94
814 839 1.072806 GTACACGGGGAAGGAGGTTTT 59.927 52.381 0.00 0.00 0.00 2.43
815 840 0.689055 GTACACGGGGAAGGAGGTTT 59.311 55.000 0.00 0.00 0.00 3.27
816 841 0.472352 TGTACACGGGGAAGGAGGTT 60.472 55.000 0.00 0.00 0.00 3.50
817 842 1.156803 TGTACACGGGGAAGGAGGT 59.843 57.895 0.00 0.00 0.00 3.85
818 843 1.595357 GTGTACACGGGGAAGGAGG 59.405 63.158 10.84 0.00 0.00 4.30
829 854 2.165845 AGATGGAGGTAAGCGTGTACAC 59.834 50.000 16.32 16.32 0.00 2.90
830 855 2.453521 AGATGGAGGTAAGCGTGTACA 58.546 47.619 0.00 0.00 0.00 2.90
831 856 4.644103 TTAGATGGAGGTAAGCGTGTAC 57.356 45.455 0.00 0.00 0.00 2.90
832 857 5.664294 TTTTAGATGGAGGTAAGCGTGTA 57.336 39.130 0.00 0.00 0.00 2.90
833 858 4.546829 TTTTAGATGGAGGTAAGCGTGT 57.453 40.909 0.00 0.00 0.00 4.49
834 859 6.281405 AGTATTTTAGATGGAGGTAAGCGTG 58.719 40.000 0.00 0.00 0.00 5.34
835 860 6.481434 AGTATTTTAGATGGAGGTAAGCGT 57.519 37.500 0.00 0.00 0.00 5.07
836 861 6.761714 ACAAGTATTTTAGATGGAGGTAAGCG 59.238 38.462 0.00 0.00 0.00 4.68
837 862 8.398665 CAACAAGTATTTTAGATGGAGGTAAGC 58.601 37.037 0.00 0.00 0.00 3.09
838 863 9.667107 TCAACAAGTATTTTAGATGGAGGTAAG 57.333 33.333 0.00 0.00 0.00 2.34
840 865 9.667107 CTTCAACAAGTATTTTAGATGGAGGTA 57.333 33.333 0.00 0.00 0.00 3.08
841 866 8.383175 TCTTCAACAAGTATTTTAGATGGAGGT 58.617 33.333 0.00 0.00 0.00 3.85
842 867 8.792830 TCTTCAACAAGTATTTTAGATGGAGG 57.207 34.615 0.00 0.00 0.00 4.30
862 887 8.940397 AAATACTTGGAGGAGAAATTTCTTCA 57.060 30.769 25.20 16.23 37.73 3.02
863 888 8.462811 GGAAATACTTGGAGGAGAAATTTCTTC 58.537 37.037 21.33 19.40 37.73 2.87
864 889 7.121315 CGGAAATACTTGGAGGAGAAATTTCTT 59.879 37.037 21.33 7.12 37.73 2.52
878 903 4.575885 TCTCTTTGTCCGGAAATACTTGG 58.424 43.478 5.23 0.00 0.00 3.61
947 988 9.052365 CCCTTTTCCTCTATCTTTATATAGGCT 57.948 37.037 0.00 0.00 33.77 4.58
948 989 9.047947 TCCCTTTTCCTCTATCTTTATATAGGC 57.952 37.037 0.00 0.00 33.77 3.93
1387 1431 3.179048 CACGCAGAGTCAATAACATCGA 58.821 45.455 0.00 0.00 0.00 3.59
1482 1529 7.778470 TTTTTACAATTGTTTAGCCAACTGG 57.222 32.000 17.78 0.00 36.21 4.00
1507 1554 7.158099 TGACTCTCTCGAGAAATTTCACATA 57.842 36.000 17.36 4.54 39.74 2.29
1534 1581 8.336801 ACAGTAAGATTTTATCCAGTTCAACC 57.663 34.615 0.00 0.00 0.00 3.77
1681 1993 2.489938 TAACTGGACTGATGGTTGGC 57.510 50.000 0.00 0.00 0.00 4.52
1917 3522 1.726865 CAGCAAAGCACGTCCAACA 59.273 52.632 0.00 0.00 0.00 3.33
2113 3732 8.137437 CGACATCCAGAATATTAAGCCAAAAAT 58.863 33.333 0.00 0.00 0.00 1.82
2130 3749 4.023707 GGAGCCAAAAATATCGACATCCAG 60.024 45.833 0.00 0.00 0.00 3.86
2238 3857 2.034878 CTCAATCGTCTCCCTCATCCA 58.965 52.381 0.00 0.00 0.00 3.41
2244 3863 1.633774 ACACACTCAATCGTCTCCCT 58.366 50.000 0.00 0.00 0.00 4.20
2302 3923 5.335897 GCACATAACACAGAATCACACCATT 60.336 40.000 0.00 0.00 0.00 3.16
2357 3980 2.167161 CGTAGCCACGGATGCAAAA 58.833 52.632 0.00 0.00 44.59 2.44
2358 3981 3.883462 CGTAGCCACGGATGCAAA 58.117 55.556 0.00 0.00 44.59 3.68
2383 4006 9.591792 CCATGTGATGATACTATAGTACCAATG 57.408 37.037 14.82 11.23 32.72 2.82
2390 4013 6.554982 ACACCACCATGTGATGATACTATAGT 59.445 38.462 10.87 10.87 39.57 2.12
2458 4082 1.892209 ACACCAACCGGCTAGAAAAG 58.108 50.000 0.00 0.00 34.57 2.27
2535 4160 9.035607 TGAAGCTCTTTTATTCGATTGAGATAC 57.964 33.333 0.00 0.00 0.00 2.24
2715 4350 6.423776 TTTCTCAAAGCTCCCATTCAATTT 57.576 33.333 0.00 0.00 0.00 1.82
2810 4445 8.682297 TCTACTATATCACTAAGCTCCCTAGA 57.318 38.462 0.00 0.00 0.00 2.43
2842 4477 6.898041 TGAATCAAGTTTGTACCGAATCAAG 58.102 36.000 0.00 0.00 0.00 3.02
2843 4478 6.869315 TGAATCAAGTTTGTACCGAATCAA 57.131 33.333 0.00 0.00 0.00 2.57
2844 4479 6.869315 TTGAATCAAGTTTGTACCGAATCA 57.131 33.333 0.00 0.00 0.00 2.57
2845 4480 8.742554 ATTTTGAATCAAGTTTGTACCGAATC 57.257 30.769 0.00 0.00 0.00 2.52
3018 4669 1.000283 AGCAACTCTGAAGGTGACGAG 60.000 52.381 0.00 0.00 43.38 4.18
3177 4828 3.036429 GCGGGAAGACCATGAGGCT 62.036 63.158 0.00 0.00 40.22 4.58
3183 4834 1.700042 GGGAGATGCGGGAAGACCAT 61.700 60.000 0.00 0.00 40.22 3.55
3184 4835 2.367202 GGGAGATGCGGGAAGACCA 61.367 63.158 0.00 0.00 40.22 4.02
3283 4940 2.755929 GACATCAAGTCGGTCCAGC 58.244 57.895 0.00 0.00 37.53 4.85
3331 4988 0.383231 GCATTGGATTGGCTCCTTCG 59.617 55.000 0.00 0.00 45.21 3.79
3371 5028 2.509166 TGTGGGTCGTAGAGATCACT 57.491 50.000 0.00 0.00 36.95 3.41
3380 5037 0.841158 TTTGGGGGATGTGGGTCGTA 60.841 55.000 0.00 0.00 0.00 3.43
3381 5038 2.137177 CTTTGGGGGATGTGGGTCGT 62.137 60.000 0.00 0.00 0.00 4.34
3436 5093 3.536917 CATCCCCGACTAGCCGCA 61.537 66.667 0.00 0.00 0.00 5.69
3561 5218 1.202927 CCAATAATGGCCGGATCCAGT 60.203 52.381 13.41 5.85 40.58 4.00
3563 5220 3.743714 CCAATAATGGCCGGATCCA 57.256 52.632 13.41 3.83 40.58 3.41
3663 5320 1.369403 GAGTAAAACTCCCCCACCCT 58.631 55.000 0.00 0.00 39.28 4.34
3745 5402 2.621526 CAGAGCCCAAAAACCGTTAGTT 59.378 45.455 0.00 0.00 41.81 2.24
3753 5410 3.005472 GGAACTAACCAGAGCCCAAAAAC 59.995 47.826 0.00 0.00 0.00 2.43
3776 5433 5.574970 ATCTGGTTTTTCTCCTCTGAACT 57.425 39.130 0.00 0.00 0.00 3.01
3780 5437 7.115414 AGGATAAATCTGGTTTTTCTCCTCTG 58.885 38.462 4.29 0.00 31.61 3.35
3788 5445 9.467796 CTTTAGAGGAGGATAAATCTGGTTTTT 57.532 33.333 0.00 0.00 0.00 1.94
3896 5553 1.151450 CAGGTCCAAACAGCACCCT 59.849 57.895 0.00 0.00 0.00 4.34
4014 5671 5.207354 TGAACCCATATGTATGCCAATGTT 58.793 37.500 1.24 0.00 32.40 2.71
4346 6005 2.775384 AGTGTAGGAGGTGTTTGGTTGA 59.225 45.455 0.00 0.00 0.00 3.18
4452 6141 8.106247 AGAAACGGTTGATGCTATTAAAAGAA 57.894 30.769 0.00 0.00 0.00 2.52
4549 6238 6.509677 GCATGGAAGTTCGTAAGTTAGTATGC 60.510 42.308 0.00 0.00 39.48 3.14
4681 6370 1.280133 CCATCTGGTTCAAGAGAGGCA 59.720 52.381 0.00 0.00 0.00 4.75
5019 6708 2.374184 CAGAATAAACCAATCGGGCCA 58.626 47.619 4.39 0.00 42.05 5.36
5129 6818 2.574018 CCAGGAGTCGTGGCAGTCA 61.574 63.158 18.42 0.00 32.63 3.41
5242 6931 1.343069 GGCCGGGAACAGATCTAGAT 58.657 55.000 4.47 4.47 0.00 1.98
5368 7057 5.128827 AGAATATGTTTACAAGAGCGAGGGA 59.871 40.000 0.00 0.00 0.00 4.20
5633 7324 9.862371 TGTTGTTGTTGTTGTTGTATAGATTTT 57.138 25.926 0.00 0.00 0.00 1.82
5634 7325 9.862371 TTGTTGTTGTTGTTGTTGTATAGATTT 57.138 25.926 0.00 0.00 0.00 2.17
5635 7326 9.296400 GTTGTTGTTGTTGTTGTTGTATAGATT 57.704 29.630 0.00 0.00 0.00 2.40
5636 7327 8.462811 TGTTGTTGTTGTTGTTGTTGTATAGAT 58.537 29.630 0.00 0.00 0.00 1.98
5637 7328 7.817641 TGTTGTTGTTGTTGTTGTTGTATAGA 58.182 30.769 0.00 0.00 0.00 1.98
5638 7329 8.369588 GTTGTTGTTGTTGTTGTTGTTGTATAG 58.630 33.333 0.00 0.00 0.00 1.31
5639 7330 7.865889 TGTTGTTGTTGTTGTTGTTGTTGTATA 59.134 29.630 0.00 0.00 0.00 1.47
5908 7601 1.491668 TATTCAGCGTAGGCCTCCAA 58.508 50.000 9.68 0.00 41.24 3.53
5918 7611 1.102978 GGTTTGGGCATATTCAGCGT 58.897 50.000 0.00 0.00 0.00 5.07
6055 7748 0.249398 GTTAGGTGTGGCGGAGATGT 59.751 55.000 0.00 0.00 0.00 3.06
6185 7878 1.743958 CAAGCTTCTGGCATTCTCTGG 59.256 52.381 0.00 0.00 44.79 3.86
6224 7917 3.411446 TGTGAACCATCGAATCAAAGCT 58.589 40.909 0.00 0.00 0.00 3.74
6338 8034 5.509832 TCAGTACTACTAGGTGTGAGGAA 57.490 43.478 0.00 0.00 0.00 3.36
6525 8226 1.971149 TGGATGAGGTCACAAGGGAT 58.029 50.000 0.00 0.00 0.00 3.85
6579 8280 6.659668 CGATTAAGATAGGACTACATCAGGGA 59.340 42.308 0.00 0.00 0.00 4.20
6636 8337 8.083462 TGTAAGATAATGTTGTGACAAGTGTC 57.917 34.615 0.00 4.43 44.97 3.67
6677 8378 5.459762 CACAAAGTCCAAGCAAAGTACATTG 59.540 40.000 6.47 6.47 0.00 2.82
6691 8392 2.484770 CCTCGGAGAAACACAAAGTCCA 60.485 50.000 6.58 0.00 34.09 4.02
6709 8410 0.323725 AATGTCATGTGGTGGGCCTC 60.324 55.000 4.53 0.00 35.27 4.70
6814 8515 2.073816 AGCCATTTTCTTGGTACGACG 58.926 47.619 0.00 0.00 39.11 5.12
6918 8619 4.043812 AGCCATACAATGAAGCTATGGGAT 59.956 41.667 10.66 0.00 38.16 3.85
6946 8647 6.762661 TGTACTAATTACCGTGGAATTAAGCC 59.237 38.462 0.00 0.00 30.40 4.35
7008 8709 7.332926 CCAGAAGAATGGAGACGGAATATATTG 59.667 40.741 1.78 0.00 43.57 1.90
7015 8716 1.066143 GCCAGAAGAATGGAGACGGAA 60.066 52.381 0.00 0.00 43.57 4.30
7071 8772 5.125739 GGACATAGCGATAGTATGGCTAACT 59.874 44.000 24.95 15.42 46.99 2.24
7158 8859 6.126409 TGAGGTCAAGGAAGCTTTAAAAAGA 58.874 36.000 0.00 0.00 38.28 2.52
7170 8871 2.251818 CAGGAGTCTGAGGTCAAGGAA 58.748 52.381 0.00 0.00 43.49 3.36
7241 8942 5.339200 GGGAAGAATGAGAGTTCCACCATTA 60.339 44.000 2.93 0.00 41.45 1.90
7248 8949 4.848357 TCAATGGGAAGAATGAGAGTTCC 58.152 43.478 0.00 0.00 39.31 3.62
7262 8963 2.942804 TCAACAAGCTGTTCAATGGGA 58.057 42.857 0.00 0.00 38.77 4.37
7280 8981 2.447408 TAGATGGCGGGAGTACTTCA 57.553 50.000 2.92 0.00 0.00 3.02
7429 9130 3.039011 ACCTCTACCAACGATTAGGCAT 58.961 45.455 0.00 0.00 0.00 4.40
7437 9138 2.526888 ATGAGGACCTCTACCAACGA 57.473 50.000 22.14 0.00 0.00 3.85
7850 9551 8.807948 ATGTATAGATTTTACAGTGGTTGCTT 57.192 30.769 0.00 0.00 33.36 3.91
7879 9580 8.715191 TCGTAACTGGAGTTGTTAAAGTTTTA 57.285 30.769 2.14 0.00 38.90 1.52
7889 9590 4.213482 GCAATTTCTCGTAACTGGAGTTGT 59.787 41.667 2.14 0.00 38.90 3.32
8124 9836 9.888878 CACTGCAAAATAATATCAAGACCATAG 57.111 33.333 0.00 0.00 0.00 2.23
8146 9858 2.035961 CTCATGACGGTATACCCCACTG 59.964 54.545 16.47 12.99 0.00 3.66
8330 10043 5.934935 TGAAGAAAATCTGACCGGTAAAC 57.065 39.130 7.34 0.00 0.00 2.01
8396 10110 5.890752 TCCACCGGACCATAATTACATTA 57.109 39.130 9.46 0.00 0.00 1.90
8542 10283 5.049405 GGCAAGATCTTGAACTTCTTTCGAA 60.049 40.000 34.43 0.00 42.93 3.71
8697 10438 1.391144 GCATTTCGCTCAATTTGCCAC 59.609 47.619 0.00 0.00 37.77 5.01
8730 10471 1.205460 AACACTTAGGGGGCATCGGT 61.205 55.000 0.00 0.00 0.00 4.69
8764 10505 1.135721 GGTAAGTAGGTACACAGCCGG 59.864 57.143 0.00 0.00 0.00 6.13
8802 10543 7.528481 CTGTACACAAATACAGCGGTTATAA 57.472 36.000 0.00 0.00 44.11 0.98
8866 10607 6.215845 CCCTCAACAACAACAAAATAAGGAG 58.784 40.000 0.00 0.00 0.00 3.69
8970 10711 5.066968 ACAACAACAAAACGAGGAACATT 57.933 34.783 0.00 0.00 0.00 2.71
8980 10721 9.691362 ACATATATCCTTCAACAACAACAAAAC 57.309 29.630 0.00 0.00 0.00 2.43
9048 10792 5.049405 CCTTAATGGTCTGTCAAGTCAACAC 60.049 44.000 0.00 0.00 0.00 3.32
9067 10811 5.929992 GGCTACATTGCACGTATATCCTTAA 59.070 40.000 0.00 0.00 34.04 1.85
9068 10812 5.245301 AGGCTACATTGCACGTATATCCTTA 59.755 40.000 0.00 0.00 34.04 2.69
9133 10877 1.069513 TCACACCGTTCGAATCAAGGT 59.930 47.619 0.00 6.44 35.24 3.50
9160 10905 8.316640 TCACCGCAAGCAAATTTTATTAAAAT 57.683 26.923 8.30 8.30 42.62 1.82
9172 10917 1.462731 AAGGCATCACCGCAAGCAAA 61.463 50.000 0.00 0.00 46.52 3.68
9200 10945 2.095059 GCAGACTGCATGGTTCGAAATT 60.095 45.455 22.62 0.00 44.26 1.82
9217 10962 1.598882 TGGCACAAATTACACGCAGA 58.401 45.000 0.00 0.00 31.92 4.26
9257 11002 3.130264 TGGCACAGGTTTTGCAGAT 57.870 47.368 0.00 0.00 42.12 2.90
9317 11062 7.499232 GCTTACTTTAAAAGGGAGATGCTATGA 59.501 37.037 0.00 0.00 0.00 2.15
9337 11082 7.609532 AGAGAACTGAAATTGCTATTGCTTACT 59.390 33.333 0.00 0.00 40.48 2.24
9343 11088 7.587629 TGAACAGAGAACTGAAATTGCTATTG 58.412 34.615 0.00 0.00 46.03 1.90
9378 11123 7.870509 TTGAGCAATATTTTGACTCTGCTAT 57.129 32.000 15.54 0.00 40.10 2.97
9458 11204 3.449018 ACACACCAATTGTTAAACCTGCA 59.551 39.130 4.43 0.00 35.67 4.41
9475 11221 5.438761 AATGAAGCTTGGTAGAAACACAC 57.561 39.130 2.10 0.00 0.00 3.82
9479 11225 4.237724 GCCAAATGAAGCTTGGTAGAAAC 58.762 43.478 2.10 0.00 44.46 2.78
9480 11226 3.258123 GGCCAAATGAAGCTTGGTAGAAA 59.742 43.478 2.10 0.00 44.46 2.52
9481 11227 2.825532 GGCCAAATGAAGCTTGGTAGAA 59.174 45.455 2.10 0.00 44.46 2.10
9482 11228 2.224992 TGGCCAAATGAAGCTTGGTAGA 60.225 45.455 0.61 0.00 44.46 2.59
9483 11229 2.165030 CTGGCCAAATGAAGCTTGGTAG 59.835 50.000 7.01 0.00 44.46 3.18
9484 11230 2.170166 CTGGCCAAATGAAGCTTGGTA 58.830 47.619 7.01 0.00 44.46 3.25
9485 11231 0.971386 CTGGCCAAATGAAGCTTGGT 59.029 50.000 7.01 0.00 44.46 3.67
9486 11232 0.971386 ACTGGCCAAATGAAGCTTGG 59.029 50.000 7.01 0.00 45.26 3.61
9487 11233 1.342174 ACACTGGCCAAATGAAGCTTG 59.658 47.619 20.84 1.86 0.00 4.01
9488 11234 1.708341 ACACTGGCCAAATGAAGCTT 58.292 45.000 20.84 0.00 0.00 3.74
9489 11235 1.708341 AACACTGGCCAAATGAAGCT 58.292 45.000 20.84 0.00 0.00 3.74
9490 11236 2.531522 AAACACTGGCCAAATGAAGC 57.468 45.000 20.84 0.00 0.00 3.86
9491 11237 3.181467 TGGAAAACACTGGCCAAATGAAG 60.181 43.478 20.84 4.81 0.00 3.02
9492 11238 2.768527 TGGAAAACACTGGCCAAATGAA 59.231 40.909 20.84 0.00 0.00 2.57
9493 11239 2.392662 TGGAAAACACTGGCCAAATGA 58.607 42.857 20.84 0.00 0.00 2.57
9494 11240 2.906691 TGGAAAACACTGGCCAAATG 57.093 45.000 7.01 11.28 0.00 2.32
9495 11241 3.647590 AGAATGGAAAACACTGGCCAAAT 59.352 39.130 7.01 0.00 33.51 2.32
9496 11242 3.037549 AGAATGGAAAACACTGGCCAAA 58.962 40.909 7.01 0.00 33.51 3.28
9497 11243 2.627699 GAGAATGGAAAACACTGGCCAA 59.372 45.455 7.01 0.00 33.51 4.52
9498 11244 2.158475 AGAGAATGGAAAACACTGGCCA 60.158 45.455 4.71 4.71 34.45 5.36
9499 11245 2.489722 GAGAGAATGGAAAACACTGGCC 59.510 50.000 0.00 0.00 0.00 5.36
9500 11246 3.416156 AGAGAGAATGGAAAACACTGGC 58.584 45.455 0.00 0.00 0.00 4.85
9501 11247 4.823989 ACAAGAGAGAATGGAAAACACTGG 59.176 41.667 0.00 0.00 0.00 4.00
9502 11248 6.183360 ACAACAAGAGAGAATGGAAAACACTG 60.183 38.462 0.00 0.00 0.00 3.66
9503 11249 5.888161 ACAACAAGAGAGAATGGAAAACACT 59.112 36.000 0.00 0.00 0.00 3.55
9504 11250 6.038714 AGACAACAAGAGAGAATGGAAAACAC 59.961 38.462 0.00 0.00 0.00 3.32
9505 11251 6.038603 CAGACAACAAGAGAGAATGGAAAACA 59.961 38.462 0.00 0.00 0.00 2.83
9506 11252 6.433766 CAGACAACAAGAGAGAATGGAAAAC 58.566 40.000 0.00 0.00 0.00 2.43
9507 11253 5.009010 GCAGACAACAAGAGAGAATGGAAAA 59.991 40.000 0.00 0.00 0.00 2.29
9508 11254 4.516698 GCAGACAACAAGAGAGAATGGAAA 59.483 41.667 0.00 0.00 0.00 3.13
9509 11255 4.067896 GCAGACAACAAGAGAGAATGGAA 58.932 43.478 0.00 0.00 0.00 3.53
9510 11256 3.326006 AGCAGACAACAAGAGAGAATGGA 59.674 43.478 0.00 0.00 0.00 3.41
9511 11257 3.672808 AGCAGACAACAAGAGAGAATGG 58.327 45.455 0.00 0.00 0.00 3.16
9512 11258 5.477510 ACTAGCAGACAACAAGAGAGAATG 58.522 41.667 0.00 0.00 0.00 2.67
9513 11259 5.736951 ACTAGCAGACAACAAGAGAGAAT 57.263 39.130 0.00 0.00 0.00 2.40
9514 11260 5.537300 AACTAGCAGACAACAAGAGAGAA 57.463 39.130 0.00 0.00 0.00 2.87
9515 11261 5.069119 TGAAACTAGCAGACAACAAGAGAGA 59.931 40.000 0.00 0.00 0.00 3.10
9516 11262 5.292765 TGAAACTAGCAGACAACAAGAGAG 58.707 41.667 0.00 0.00 0.00 3.20
9517 11263 5.276461 TGAAACTAGCAGACAACAAGAGA 57.724 39.130 0.00 0.00 0.00 3.10
9518 11264 4.084118 GCTGAAACTAGCAGACAACAAGAG 60.084 45.833 0.00 0.00 43.17 2.85
9519 11265 3.809832 GCTGAAACTAGCAGACAACAAGA 59.190 43.478 0.00 0.00 43.17 3.02
9520 11266 3.812053 AGCTGAAACTAGCAGACAACAAG 59.188 43.478 0.00 0.00 46.07 3.16
9521 11267 3.808728 AGCTGAAACTAGCAGACAACAA 58.191 40.909 0.00 0.00 46.07 2.83
9522 11268 3.475566 AGCTGAAACTAGCAGACAACA 57.524 42.857 0.00 0.00 46.07 3.33
9523 11269 4.991687 AGTTAGCTGAAACTAGCAGACAAC 59.008 41.667 0.00 0.00 46.07 3.32
9524 11270 4.991056 CAGTTAGCTGAAACTAGCAGACAA 59.009 41.667 0.00 0.00 46.07 3.18
9525 11271 4.039245 ACAGTTAGCTGAAACTAGCAGACA 59.961 41.667 14.09 0.00 46.07 3.41
9526 11272 4.561105 ACAGTTAGCTGAAACTAGCAGAC 58.439 43.478 14.09 0.00 46.07 3.51
9527 11273 4.873746 ACAGTTAGCTGAAACTAGCAGA 57.126 40.909 14.09 0.00 46.07 4.26
9587 11333 0.597568 TAGCAAACATGCAGCACACC 59.402 50.000 0.00 0.00 37.25 4.16
9613 11359 1.348036 GCCAACACTAGTCCAGACCTT 59.652 52.381 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.