Multiple sequence alignment - TraesCS1B01G147900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G147900 chr1B 100.000 2546 0 0 1 2546 214570935 214573480 0.000000e+00 4702.0
1 TraesCS1B01G147900 chr1B 86.742 264 35 0 41 304 637942943 637942680 6.890000e-76 294.0
2 TraesCS1B01G147900 chr1B 81.915 188 26 6 484 671 637942173 637941994 4.390000e-33 152.0
3 TraesCS1B01G147900 chr1B 88.750 80 7 2 2456 2534 370953605 370953683 2.080000e-16 97.1
4 TraesCS1B01G147900 chr1B 92.453 53 4 0 2407 2459 663612363 663612415 2.720000e-10 76.8
5 TraesCS1B01G147900 chr1D 96.371 1295 40 4 707 2000 135394654 135395942 0.000000e+00 2124.0
6 TraesCS1B01G147900 chr1A 96.996 1132 27 4 738 1867 161672011 161670885 0.000000e+00 1895.0
7 TraesCS1B01G147900 chr1A 94.624 279 11 3 2010 2284 208402209 208402487 1.810000e-116 429.0
8 TraesCS1B01G147900 chr1A 94.585 277 11 1 2012 2284 138025674 138025398 2.340000e-115 425.0
9 TraesCS1B01G147900 chr1A 94.631 149 8 0 1859 2007 161669422 161669274 5.480000e-57 231.0
10 TraesCS1B01G147900 chr1A 91.875 160 13 0 2387 2546 161668897 161668738 9.170000e-55 224.0
11 TraesCS1B01G147900 chr1A 89.873 79 7 1 2456 2534 562031513 562031436 1.610000e-17 100.0
12 TraesCS1B01G147900 chr1A 96.000 50 2 0 2280 2329 161669277 161669228 5.840000e-12 82.4
13 TraesCS1B01G147900 chr1A 94.595 37 1 1 192 228 35282423 35282388 3.540000e-04 56.5
14 TraesCS1B01G147900 chr7B 95.514 691 12 7 1 681 692789669 692790350 0.000000e+00 1086.0
15 TraesCS1B01G147900 chr7B 90.000 80 6 2 2456 2534 624958004 624957926 4.480000e-18 102.0
16 TraesCS1B01G147900 chr3A 99.388 490 3 0 1 490 85477236 85476747 0.000000e+00 889.0
17 TraesCS1B01G147900 chr3A 99.184 490 4 0 1 490 647140683 647140194 0.000000e+00 883.0
18 TraesCS1B01G147900 chr3A 98.776 490 6 0 1 490 85546101 85545612 0.000000e+00 872.0
19 TraesCS1B01G147900 chr3A 98.485 198 3 0 484 681 85476698 85476501 1.450000e-92 350.0
20 TraesCS1B01G147900 chr3A 97.475 198 5 0 484 681 85545563 85545366 3.140000e-89 339.0
21 TraesCS1B01G147900 chr3A 96.970 198 6 0 484 681 647140145 647139948 1.460000e-87 333.0
22 TraesCS1B01G147900 chr3A 96.429 56 2 0 2406 2461 699856411 699856466 2.700000e-15 93.5
23 TraesCS1B01G147900 chr2B 97.951 488 10 0 1 488 449522469 449521982 0.000000e+00 846.0
24 TraesCS1B01G147900 chr2B 97.872 188 4 0 484 671 449521932 449521745 2.440000e-85 326.0
25 TraesCS1B01G147900 chr2B 100.000 29 0 0 200 228 94813349 94813321 1.000000e-03 54.7
26 TraesCS1B01G147900 chr4D 95.273 275 13 0 2010 2284 356179591 356179865 1.080000e-118 436.0
27 TraesCS1B01G147900 chr2D 94.326 282 16 0 2010 2291 22500724 22500443 1.400000e-117 433.0
28 TraesCS1B01G147900 chr2D 88.750 80 7 2 2456 2534 561843349 561843427 2.080000e-16 97.1
29 TraesCS1B01G147900 chr3D 94.909 275 13 1 2010 2284 586575848 586576121 1.810000e-116 429.0
30 TraesCS1B01G147900 chr3D 94.245 278 16 0 2010 2287 353197368 353197091 2.340000e-115 425.0
31 TraesCS1B01G147900 chr3D 93.929 280 17 0 2010 2289 48940558 48940279 8.420000e-115 424.0
32 TraesCS1B01G147900 chr7D 94.545 275 15 0 2010 2284 33195964 33195690 2.340000e-115 425.0
33 TraesCS1B01G147900 chr6A 93.333 285 18 1 2010 2293 47959368 47959084 1.090000e-113 420.0
34 TraesCS1B01G147900 chr6A 89.855 69 4 2 2406 2473 517897547 517897613 4.510000e-13 86.1
35 TraesCS1B01G147900 chr6A 91.304 46 2 2 2395 2440 584677123 584677166 7.610000e-06 62.1
36 TraesCS1B01G147900 chr5B 82.639 144 10 1 2406 2534 12574656 12574799 2.070000e-21 113.0
37 TraesCS1B01G147900 chr5D 91.250 80 6 1 2456 2534 556999670 556999749 9.630000e-20 108.0
38 TraesCS1B01G147900 chr3B 89.744 78 6 2 2456 2532 471508594 471508518 5.800000e-17 99.0
39 TraesCS1B01G147900 chr4A 88.608 79 9 0 2456 2534 456448587 456448665 2.080000e-16 97.1
40 TraesCS1B01G147900 chr6B 91.935 62 4 1 2406 2466 668971073 668971134 4.510000e-13 86.1
41 TraesCS1B01G147900 chr6B 91.667 60 4 1 2408 2466 669056255 669056314 5.840000e-12 82.4
42 TraesCS1B01G147900 chr5A 89.552 67 6 1 2407 2473 438367822 438367757 1.620000e-12 84.2
43 TraesCS1B01G147900 chr5A 97.297 37 0 1 192 228 40621419 40621384 7.610000e-06 62.1
44 TraesCS1B01G147900 chrUn 94.340 53 3 0 2407 2459 999681 999733 5.840000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G147900 chr1B 214570935 214573480 2545 False 4702.0 4702 100.0000 1 2546 1 chr1B.!!$F1 2545
1 TraesCS1B01G147900 chr1B 637941994 637942943 949 True 223.0 294 84.3285 41 671 2 chr1B.!!$R1 630
2 TraesCS1B01G147900 chr1D 135394654 135395942 1288 False 2124.0 2124 96.3710 707 2000 1 chr1D.!!$F1 1293
3 TraesCS1B01G147900 chr1A 161668738 161672011 3273 True 608.1 1895 94.8755 738 2546 4 chr1A.!!$R4 1808
4 TraesCS1B01G147900 chr7B 692789669 692790350 681 False 1086.0 1086 95.5140 1 681 1 chr7B.!!$F1 680
5 TraesCS1B01G147900 chr3A 85476501 85477236 735 True 619.5 889 98.9365 1 681 2 chr3A.!!$R1 680
6 TraesCS1B01G147900 chr3A 647139948 647140683 735 True 608.0 883 98.0770 1 681 2 chr3A.!!$R3 680
7 TraesCS1B01G147900 chr3A 85545366 85546101 735 True 605.5 872 98.1255 1 681 2 chr3A.!!$R2 680
8 TraesCS1B01G147900 chr2B 449521745 449522469 724 True 586.0 846 97.9115 1 671 2 chr2B.!!$R2 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1284 0.107459 CTACCCTCTCCTTGCCTTGC 60.107 60.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 3798 1.401409 CGTGCAGCCGACAAATGAAAT 60.401 47.619 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
556 910 1.816863 AAGGACAGCGGCGAAGAGAA 61.817 55.000 12.98 0.00 0.00 2.87
682 1036 4.521130 CGAGAGCCATAGCCATACTAAA 57.479 45.455 0.00 0.00 41.25 1.85
683 1037 5.078411 CGAGAGCCATAGCCATACTAAAT 57.922 43.478 0.00 0.00 41.25 1.40
684 1038 4.867047 CGAGAGCCATAGCCATACTAAATG 59.133 45.833 0.00 0.00 41.25 2.32
685 1039 5.336770 CGAGAGCCATAGCCATACTAAATGA 60.337 44.000 0.00 0.00 41.25 2.57
686 1040 6.439636 AGAGCCATAGCCATACTAAATGAA 57.560 37.500 0.00 0.00 41.25 2.57
687 1041 6.841601 AGAGCCATAGCCATACTAAATGAAA 58.158 36.000 0.00 0.00 41.25 2.69
688 1042 7.290061 AGAGCCATAGCCATACTAAATGAAAA 58.710 34.615 0.00 0.00 41.25 2.29
689 1043 7.779798 AGAGCCATAGCCATACTAAATGAAAAA 59.220 33.333 0.00 0.00 41.25 1.94
690 1044 7.945134 AGCCATAGCCATACTAAATGAAAAAG 58.055 34.615 0.00 0.00 41.25 2.27
691 1045 7.779798 AGCCATAGCCATACTAAATGAAAAAGA 59.220 33.333 0.00 0.00 41.25 2.52
692 1046 7.862873 GCCATAGCCATACTAAATGAAAAAGAC 59.137 37.037 0.00 0.00 33.57 3.01
693 1047 8.902806 CCATAGCCATACTAAATGAAAAAGACA 58.097 33.333 0.00 0.00 33.57 3.41
696 1050 7.775120 AGCCATACTAAATGAAAAAGACATGG 58.225 34.615 0.00 0.00 33.42 3.66
697 1051 6.476706 GCCATACTAAATGAAAAAGACATGGC 59.523 38.462 0.00 0.00 41.01 4.40
698 1052 7.546358 CCATACTAAATGAAAAAGACATGGCA 58.454 34.615 0.00 0.00 0.00 4.92
699 1053 7.703621 CCATACTAAATGAAAAAGACATGGCAG 59.296 37.037 0.00 0.00 0.00 4.85
700 1054 6.029346 ACTAAATGAAAAAGACATGGCAGG 57.971 37.500 0.00 0.00 0.00 4.85
701 1055 4.961438 AAATGAAAAAGACATGGCAGGT 57.039 36.364 3.63 3.63 0.00 4.00
702 1056 3.947910 ATGAAAAAGACATGGCAGGTG 57.052 42.857 10.56 0.00 0.00 4.00
703 1057 2.665165 TGAAAAAGACATGGCAGGTGT 58.335 42.857 10.56 1.51 0.00 4.16
704 1058 2.361757 TGAAAAAGACATGGCAGGTGTG 59.638 45.455 10.56 0.00 0.00 3.82
705 1059 2.363306 AAAAGACATGGCAGGTGTGA 57.637 45.000 10.56 0.00 0.00 3.58
756 1110 0.534427 ATGGATGGCTGAGACATGCG 60.534 55.000 15.22 0.00 42.46 4.73
929 1284 0.107459 CTACCCTCTCCTTGCCTTGC 60.107 60.000 0.00 0.00 0.00 4.01
930 1285 1.562672 TACCCTCTCCTTGCCTTGCC 61.563 60.000 0.00 0.00 0.00 4.52
931 1286 2.610519 CCCTCTCCTTGCCTTGCCT 61.611 63.158 0.00 0.00 0.00 4.75
932 1287 1.381851 CCTCTCCTTGCCTTGCCTT 59.618 57.895 0.00 0.00 0.00 4.35
933 1288 0.964358 CCTCTCCTTGCCTTGCCTTG 60.964 60.000 0.00 0.00 0.00 3.61
1143 1498 2.125269 GCGCATACACCGTTCCCT 60.125 61.111 0.30 0.00 0.00 4.20
1176 1531 4.555709 ACGGCTGGGAAACACGCA 62.556 61.111 0.00 0.00 39.53 5.24
1446 1801 3.263503 CTTCCAGTCGTGCGACCGA 62.264 63.158 19.35 13.08 45.59 4.69
1533 1888 3.527533 CAATAATTGCATGCAACTGGCT 58.472 40.909 34.10 16.31 45.15 4.75
1630 1985 4.775236 AGGATATGCAAGGACTTGAGTTC 58.225 43.478 15.76 6.29 42.93 3.01
1642 1997 2.808543 ACTTGAGTTCGCCATTCTGTTC 59.191 45.455 0.00 0.00 0.00 3.18
1961 3788 3.437049 GCAGTACGCTGAAAAATCTTCCT 59.563 43.478 0.00 0.00 45.28 3.36
1967 3794 5.281727 ACGCTGAAAAATCTTCCTTGTTTC 58.718 37.500 0.00 0.00 0.00 2.78
1971 3798 7.425606 GCTGAAAAATCTTCCTTGTTTCACTA 58.574 34.615 0.00 0.00 34.24 2.74
2007 3834 2.037902 TGCACGAGGAAATAACCAGTGA 59.962 45.455 13.98 1.95 40.50 3.41
2008 3835 2.415512 GCACGAGGAAATAACCAGTGAC 59.584 50.000 13.98 5.45 40.50 3.67
2009 3836 3.659786 CACGAGGAAATAACCAGTGACA 58.340 45.455 0.00 0.00 40.50 3.58
2010 3837 3.679980 CACGAGGAAATAACCAGTGACAG 59.320 47.826 0.00 0.00 40.50 3.51
2011 3838 3.576982 ACGAGGAAATAACCAGTGACAGA 59.423 43.478 0.00 0.00 0.00 3.41
2012 3839 3.927142 CGAGGAAATAACCAGTGACAGAC 59.073 47.826 0.00 0.00 0.00 3.51
2013 3840 4.322049 CGAGGAAATAACCAGTGACAGACT 60.322 45.833 0.00 0.00 34.02 3.24
2014 3841 5.105877 CGAGGAAATAACCAGTGACAGACTA 60.106 44.000 0.00 0.00 31.73 2.59
2015 3842 6.038997 AGGAAATAACCAGTGACAGACTAC 57.961 41.667 0.00 0.00 31.73 2.73
2016 3843 5.046520 AGGAAATAACCAGTGACAGACTACC 60.047 44.000 0.00 0.00 31.73 3.18
2017 3844 4.820894 AATAACCAGTGACAGACTACCC 57.179 45.455 0.00 0.00 31.73 3.69
2018 3845 2.097110 AACCAGTGACAGACTACCCA 57.903 50.000 0.00 0.00 31.73 4.51
2019 3846 1.339097 ACCAGTGACAGACTACCCAC 58.661 55.000 0.00 0.00 31.73 4.61
2020 3847 1.338107 CCAGTGACAGACTACCCACA 58.662 55.000 0.00 0.00 31.73 4.17
2021 3848 1.273606 CCAGTGACAGACTACCCACAG 59.726 57.143 0.00 0.00 31.73 3.66
2022 3849 1.964223 CAGTGACAGACTACCCACAGT 59.036 52.381 0.00 0.00 31.73 3.55
2023 3850 1.964223 AGTGACAGACTACCCACAGTG 59.036 52.381 0.00 0.00 30.86 3.66
2024 3851 1.000955 GTGACAGACTACCCACAGTGG 59.999 57.143 13.35 13.35 37.25 4.00
2025 3852 1.133294 TGACAGACTACCCACAGTGGA 60.133 52.381 22.37 0.31 40.96 4.02
2026 3853 1.968493 GACAGACTACCCACAGTGGAA 59.032 52.381 22.37 7.78 40.96 3.53
2027 3854 1.971357 ACAGACTACCCACAGTGGAAG 59.029 52.381 22.37 18.88 40.96 3.46
2028 3855 1.971357 CAGACTACCCACAGTGGAAGT 59.029 52.381 22.37 21.83 40.96 3.01
2029 3856 3.162666 CAGACTACCCACAGTGGAAGTA 58.837 50.000 22.37 14.01 40.96 2.24
2030 3857 3.576982 CAGACTACCCACAGTGGAAGTAA 59.423 47.826 22.37 0.41 40.96 2.24
2031 3858 3.577415 AGACTACCCACAGTGGAAGTAAC 59.423 47.826 22.37 12.11 40.96 2.50
2032 3859 3.311091 ACTACCCACAGTGGAAGTAACA 58.689 45.455 22.37 0.00 40.96 2.41
2033 3860 3.908103 ACTACCCACAGTGGAAGTAACAT 59.092 43.478 22.37 1.92 40.96 2.71
2034 3861 5.088730 ACTACCCACAGTGGAAGTAACATA 58.911 41.667 22.37 0.00 40.96 2.29
2035 3862 4.986054 ACCCACAGTGGAAGTAACATAA 57.014 40.909 22.37 0.00 40.96 1.90
2036 3863 5.313280 ACCCACAGTGGAAGTAACATAAA 57.687 39.130 22.37 0.00 40.96 1.40
2037 3864 5.887754 ACCCACAGTGGAAGTAACATAAAT 58.112 37.500 22.37 0.00 40.96 1.40
2038 3865 5.710099 ACCCACAGTGGAAGTAACATAAATG 59.290 40.000 22.37 1.12 40.96 2.32
2039 3866 5.943416 CCCACAGTGGAAGTAACATAAATGA 59.057 40.000 22.37 0.00 40.96 2.57
2040 3867 6.603201 CCCACAGTGGAAGTAACATAAATGAT 59.397 38.462 22.37 0.00 40.96 2.45
2041 3868 7.773224 CCCACAGTGGAAGTAACATAAATGATA 59.227 37.037 22.37 0.00 40.96 2.15
2042 3869 9.173021 CCACAGTGGAAGTAACATAAATGATAA 57.827 33.333 15.35 0.00 40.96 1.75
2043 3870 9.988350 CACAGTGGAAGTAACATAAATGATAAC 57.012 33.333 0.00 0.00 0.00 1.89
2044 3871 9.733556 ACAGTGGAAGTAACATAAATGATAACA 57.266 29.630 0.00 0.00 0.00 2.41
2060 3887 8.839310 AATGATAACATCACACTTATCTAGGC 57.161 34.615 0.00 0.00 43.01 3.93
2061 3888 7.360113 TGATAACATCACACTTATCTAGGCA 57.640 36.000 0.00 0.00 33.59 4.75
2062 3889 7.791029 TGATAACATCACACTTATCTAGGCAA 58.209 34.615 0.00 0.00 33.59 4.52
2063 3890 8.264347 TGATAACATCACACTTATCTAGGCAAA 58.736 33.333 0.00 0.00 33.59 3.68
2064 3891 9.109393 GATAACATCACACTTATCTAGGCAAAA 57.891 33.333 0.00 0.00 0.00 2.44
2065 3892 7.944729 AACATCACACTTATCTAGGCAAAAT 57.055 32.000 0.00 0.00 0.00 1.82
2067 3894 9.461312 AACATCACACTTATCTAGGCAAAATAA 57.539 29.630 0.00 0.00 0.00 1.40
2068 3895 9.461312 ACATCACACTTATCTAGGCAAAATAAA 57.539 29.630 0.00 0.00 0.00 1.40
2071 3898 9.679661 TCACACTTATCTAGGCAAAATAAATGA 57.320 29.630 0.00 0.00 0.00 2.57
2078 3905 7.936496 TCTAGGCAAAATAAATGATGTGACA 57.064 32.000 0.00 0.00 0.00 3.58
2079 3906 8.523915 TCTAGGCAAAATAAATGATGTGACAT 57.476 30.769 0.00 0.00 0.00 3.06
2080 3907 8.407832 TCTAGGCAAAATAAATGATGTGACATG 58.592 33.333 1.23 0.00 0.00 3.21
2081 3908 6.938507 AGGCAAAATAAATGATGTGACATGT 58.061 32.000 1.23 0.00 0.00 3.21
2082 3909 8.065473 AGGCAAAATAAATGATGTGACATGTA 57.935 30.769 1.23 0.00 0.00 2.29
2083 3910 8.530311 AGGCAAAATAAATGATGTGACATGTAA 58.470 29.630 1.23 0.00 0.00 2.41
2084 3911 9.316730 GGCAAAATAAATGATGTGACATGTAAT 57.683 29.630 1.23 0.00 0.00 1.89
2108 3935 8.985315 ATTAATGAAGAAAGATAGGCATGTGA 57.015 30.769 0.00 0.00 0.00 3.58
2109 3936 8.985315 TTAATGAAGAAAGATAGGCATGTGAT 57.015 30.769 0.00 0.00 0.00 3.06
2111 3938 8.985315 AATGAAGAAAGATAGGCATGTGATAA 57.015 30.769 0.00 0.00 0.00 1.75
2112 3939 7.792374 TGAAGAAAGATAGGCATGTGATAAC 57.208 36.000 0.00 0.00 0.00 1.89
2113 3940 7.337938 TGAAGAAAGATAGGCATGTGATAACA 58.662 34.615 0.00 0.00 0.00 2.41
2114 3941 7.994911 TGAAGAAAGATAGGCATGTGATAACAT 59.005 33.333 0.00 0.00 0.00 2.71
2115 3942 9.494271 GAAGAAAGATAGGCATGTGATAACATA 57.506 33.333 0.00 0.00 0.00 2.29
2116 3943 9.499479 AAGAAAGATAGGCATGTGATAACATAG 57.501 33.333 0.00 0.00 0.00 2.23
2117 3944 7.605691 AGAAAGATAGGCATGTGATAACATAGC 59.394 37.037 0.00 2.54 0.00 2.97
2118 3945 6.617782 AGATAGGCATGTGATAACATAGCT 57.382 37.500 13.85 0.00 0.00 3.32
2119 3946 7.724490 AGATAGGCATGTGATAACATAGCTA 57.276 36.000 13.85 0.00 0.00 3.32
2120 3947 7.780064 AGATAGGCATGTGATAACATAGCTAG 58.220 38.462 13.85 0.00 0.00 3.42
2121 3948 5.815233 AGGCATGTGATAACATAGCTAGT 57.185 39.130 13.85 0.00 0.00 2.57
2122 3949 6.179906 AGGCATGTGATAACATAGCTAGTT 57.820 37.500 13.85 6.69 0.00 2.24
2123 3950 7.303182 AGGCATGTGATAACATAGCTAGTTA 57.697 36.000 14.23 14.23 36.06 2.24
2124 3951 7.155328 AGGCATGTGATAACATAGCTAGTTAC 58.845 38.462 14.19 8.29 34.59 2.50
2125 3952 7.015682 AGGCATGTGATAACATAGCTAGTTACT 59.984 37.037 14.19 0.00 34.59 2.24
2126 3953 7.116948 GGCATGTGATAACATAGCTAGTTACTG 59.883 40.741 14.19 4.37 34.59 2.74
2127 3954 7.653713 GCATGTGATAACATAGCTAGTTACTGT 59.346 37.037 14.19 4.91 34.59 3.55
2135 3962 8.928270 AACATAGCTAGTTACTGTAACATCAC 57.072 34.615 27.12 15.70 41.07 3.06
2136 3963 8.063200 ACATAGCTAGTTACTGTAACATCACA 57.937 34.615 27.12 12.96 41.07 3.58
2137 3964 7.974501 ACATAGCTAGTTACTGTAACATCACAC 59.025 37.037 27.12 13.16 41.07 3.82
2138 3965 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
2139 3966 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
2140 3967 8.063200 AGCTAGTTACTGTAACATCACACATA 57.937 34.615 27.12 11.12 41.07 2.29
2141 3968 8.696374 AGCTAGTTACTGTAACATCACACATAT 58.304 33.333 27.12 9.43 41.07 1.78
2142 3969 8.969267 GCTAGTTACTGTAACATCACACATATC 58.031 37.037 27.12 5.73 41.07 1.63
2145 3972 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
2146 3973 9.366216 GTTACTGTAACATCACACATATCAAGA 57.634 33.333 22.30 0.00 38.52 3.02
2147 3974 9.936759 TTACTGTAACATCACACATATCAAGAA 57.063 29.630 0.00 0.00 0.00 2.52
2148 3975 8.846943 ACTGTAACATCACACATATCAAGAAA 57.153 30.769 0.00 0.00 0.00 2.52
2149 3976 9.283768 ACTGTAACATCACACATATCAAGAAAA 57.716 29.630 0.00 0.00 0.00 2.29
2150 3977 9.764870 CTGTAACATCACACATATCAAGAAAAG 57.235 33.333 0.00 0.00 0.00 2.27
2151 3978 9.500785 TGTAACATCACACATATCAAGAAAAGA 57.499 29.630 0.00 0.00 0.00 2.52
2152 3979 9.979270 GTAACATCACACATATCAAGAAAAGAG 57.021 33.333 0.00 0.00 0.00 2.85
2153 3980 7.621428 ACATCACACATATCAAGAAAAGAGG 57.379 36.000 0.00 0.00 0.00 3.69
2154 3981 7.397221 ACATCACACATATCAAGAAAAGAGGA 58.603 34.615 0.00 0.00 0.00 3.71
2155 3982 7.551974 ACATCACACATATCAAGAAAAGAGGAG 59.448 37.037 0.00 0.00 0.00 3.69
2156 3983 7.009179 TCACACATATCAAGAAAAGAGGAGT 57.991 36.000 0.00 0.00 0.00 3.85
2157 3984 7.099764 TCACACATATCAAGAAAAGAGGAGTC 58.900 38.462 0.00 0.00 0.00 3.36
2158 3985 7.038729 TCACACATATCAAGAAAAGAGGAGTCT 60.039 37.037 0.00 0.00 32.81 3.24
2159 3986 8.253810 CACACATATCAAGAAAAGAGGAGTCTA 58.746 37.037 0.00 0.00 30.45 2.59
2160 3987 8.254508 ACACATATCAAGAAAAGAGGAGTCTAC 58.745 37.037 0.00 0.00 30.45 2.59
2161 3988 8.253810 CACATATCAAGAAAAGAGGAGTCTACA 58.746 37.037 0.00 0.00 30.45 2.74
2162 3989 8.816894 ACATATCAAGAAAAGAGGAGTCTACAA 58.183 33.333 0.00 0.00 30.45 2.41
2163 3990 9.092876 CATATCAAGAAAAGAGGAGTCTACAAC 57.907 37.037 0.00 0.00 30.45 3.32
2164 3991 5.855045 TCAAGAAAAGAGGAGTCTACAACC 58.145 41.667 0.00 0.00 30.45 3.77
2165 3992 5.602978 TCAAGAAAAGAGGAGTCTACAACCT 59.397 40.000 0.00 0.00 36.68 3.50
2166 3993 6.781014 TCAAGAAAAGAGGAGTCTACAACCTA 59.219 38.462 0.00 0.00 33.89 3.08
2167 3994 7.289317 TCAAGAAAAGAGGAGTCTACAACCTAA 59.711 37.037 0.00 0.00 33.89 2.69
2168 3995 7.800300 AGAAAAGAGGAGTCTACAACCTAAT 57.200 36.000 0.00 0.00 33.89 1.73
2169 3996 8.896722 AGAAAAGAGGAGTCTACAACCTAATA 57.103 34.615 0.00 0.00 33.89 0.98
2170 3997 9.322769 AGAAAAGAGGAGTCTACAACCTAATAA 57.677 33.333 0.00 0.00 33.89 1.40
2171 3998 9.939802 GAAAAGAGGAGTCTACAACCTAATAAA 57.060 33.333 0.00 0.00 33.89 1.40
2173 4000 9.892130 AAAGAGGAGTCTACAACCTAATAAATG 57.108 33.333 0.00 0.00 33.89 2.32
2174 4001 8.840200 AGAGGAGTCTACAACCTAATAAATGA 57.160 34.615 0.00 0.00 33.89 2.57
2175 4002 9.440761 AGAGGAGTCTACAACCTAATAAATGAT 57.559 33.333 0.00 0.00 33.89 2.45
2176 4003 9.482627 GAGGAGTCTACAACCTAATAAATGATG 57.517 37.037 0.00 0.00 33.89 3.07
2177 4004 8.993424 AGGAGTCTACAACCTAATAAATGATGT 58.007 33.333 0.00 0.00 31.78 3.06
2178 4005 9.046296 GGAGTCTACAACCTAATAAATGATGTG 57.954 37.037 0.00 0.00 0.00 3.21
2179 4006 9.817809 GAGTCTACAACCTAATAAATGATGTGA 57.182 33.333 0.00 0.00 0.00 3.58
2182 4009 9.056005 TCTACAACCTAATAAATGATGTGATGC 57.944 33.333 0.00 0.00 0.00 3.91
2183 4010 7.643569 ACAACCTAATAAATGATGTGATGCA 57.356 32.000 0.00 0.00 0.00 3.96
2184 4011 8.241497 ACAACCTAATAAATGATGTGATGCAT 57.759 30.769 0.00 0.00 41.24 3.96
2185 4012 8.139350 ACAACCTAATAAATGATGTGATGCATG 58.861 33.333 2.46 0.00 38.06 4.06
2186 4013 8.354426 CAACCTAATAAATGATGTGATGCATGA 58.646 33.333 2.46 0.00 38.06 3.07
2187 4014 7.879070 ACCTAATAAATGATGTGATGCATGAC 58.121 34.615 9.59 9.59 38.06 3.06
2188 4015 7.503230 ACCTAATAAATGATGTGATGCATGACA 59.497 33.333 21.38 21.38 38.06 3.58
2189 4016 7.806487 CCTAATAAATGATGTGATGCATGACAC 59.194 37.037 21.55 15.60 38.06 3.67
2194 4021 4.380128 ATGATGTGATGCATGACACAACAC 60.380 41.667 24.34 16.05 46.40 3.32
2195 4022 2.295885 TGTGATGCATGACACAACACA 58.704 42.857 15.42 12.43 42.72 3.72
2196 4023 2.885894 TGTGATGCATGACACAACACAT 59.114 40.909 15.42 0.00 42.72 3.21
2197 4024 4.070716 TGTGATGCATGACACAACACATA 58.929 39.130 15.42 0.00 42.72 2.29
2198 4025 4.701171 TGTGATGCATGACACAACACATAT 59.299 37.500 15.42 0.00 42.72 1.78
2199 4026 5.032220 GTGATGCATGACACAACACATATG 58.968 41.667 11.72 0.00 37.05 1.78
2200 4027 4.701171 TGATGCATGACACAACACATATGT 59.299 37.500 2.46 1.41 42.46 2.29
2214 4041 5.730550 ACACATATGTTACTACCCACTGTG 58.269 41.667 5.37 0.00 34.46 3.66
2215 4042 5.116180 CACATATGTTACTACCCACTGTGG 58.884 45.833 20.01 20.01 37.25 4.17
2216 4043 5.027460 ACATATGTTACTACCCACTGTGGA 58.973 41.667 27.94 8.24 40.96 4.02
2217 4044 5.128827 ACATATGTTACTACCCACTGTGGAG 59.871 44.000 27.94 19.53 40.96 3.86
2218 4045 2.253610 TGTTACTACCCACTGTGGAGG 58.746 52.381 27.94 17.76 40.96 4.30
2219 4046 2.254508 GTTACTACCCACTGTGGAGGT 58.745 52.381 27.94 21.84 40.96 3.85
2220 4047 3.181419 TGTTACTACCCACTGTGGAGGTA 60.181 47.826 27.94 20.93 40.96 3.08
2222 4049 2.233305 CTACCCACTGTGGAGGTAGT 57.767 55.000 27.94 17.93 45.39 2.73
2223 4050 3.377253 CTACCCACTGTGGAGGTAGTA 57.623 52.381 27.94 18.08 45.39 1.82
2224 4051 2.708037 ACCCACTGTGGAGGTAGTAA 57.292 50.000 27.94 0.00 40.96 2.24
2225 4052 2.254508 ACCCACTGTGGAGGTAGTAAC 58.745 52.381 27.94 0.00 40.96 2.50
2226 4053 2.253610 CCCACTGTGGAGGTAGTAACA 58.746 52.381 27.94 0.00 40.96 2.41
2227 4054 2.838202 CCCACTGTGGAGGTAGTAACAT 59.162 50.000 27.94 0.00 40.96 2.71
2228 4055 4.028131 CCCACTGTGGAGGTAGTAACATA 58.972 47.826 27.94 0.00 40.96 2.29
2229 4056 4.099573 CCCACTGTGGAGGTAGTAACATAG 59.900 50.000 27.94 2.06 40.96 2.23
2230 4057 4.954202 CCACTGTGGAGGTAGTAACATAGA 59.046 45.833 22.33 0.00 40.96 1.98
2231 4058 5.163540 CCACTGTGGAGGTAGTAACATAGAC 60.164 48.000 22.33 0.00 40.96 2.59
2232 4059 5.652891 CACTGTGGAGGTAGTAACATAGACT 59.347 44.000 0.00 0.00 0.00 3.24
2233 4060 6.827251 CACTGTGGAGGTAGTAACATAGACTA 59.173 42.308 0.00 0.00 0.00 2.59
2234 4061 7.012515 CACTGTGGAGGTAGTAACATAGACTAG 59.987 44.444 0.00 0.00 30.08 2.57
2235 4062 6.966751 TGTGGAGGTAGTAACATAGACTAGT 58.033 40.000 0.00 0.00 30.08 2.57
2236 4063 8.094284 TGTGGAGGTAGTAACATAGACTAGTA 57.906 38.462 0.00 0.00 30.08 1.82
2237 4064 8.551440 TGTGGAGGTAGTAACATAGACTAGTAA 58.449 37.037 0.00 0.00 30.08 2.24
2238 4065 8.835439 GTGGAGGTAGTAACATAGACTAGTAAC 58.165 40.741 0.00 0.00 30.08 2.50
2239 4066 8.551440 TGGAGGTAGTAACATAGACTAGTAACA 58.449 37.037 0.00 0.00 30.08 2.41
2240 4067 9.571816 GGAGGTAGTAACATAGACTAGTAACAT 57.428 37.037 0.00 0.00 30.08 2.71
2242 4069 9.917887 AGGTAGTAACATAGACTAGTAACATGT 57.082 33.333 0.00 3.02 30.08 3.21
2243 4070 9.947669 GGTAGTAACATAGACTAGTAACATGTG 57.052 37.037 14.07 5.18 30.08 3.21
2244 4071 9.448294 GTAGTAACATAGACTAGTAACATGTGC 57.552 37.037 14.07 11.16 30.08 4.57
2245 4072 8.063200 AGTAACATAGACTAGTAACATGTGCA 57.937 34.615 14.07 6.09 30.55 4.57
2246 4073 8.696374 AGTAACATAGACTAGTAACATGTGCAT 58.304 33.333 14.07 5.21 30.55 3.96
2247 4074 7.776933 AACATAGACTAGTAACATGTGCATG 57.223 36.000 14.07 10.31 44.15 4.06
2262 4089 7.834068 CATGTGCATGTTACTACTCTAAGTT 57.166 36.000 4.13 0.00 34.23 2.66
2263 4090 8.926715 CATGTGCATGTTACTACTCTAAGTTA 57.073 34.615 4.13 0.00 34.23 2.24
2264 4091 8.808529 CATGTGCATGTTACTACTCTAAGTTAC 58.191 37.037 4.13 0.00 34.23 2.50
2265 4092 8.118976 TGTGCATGTTACTACTCTAAGTTACT 57.881 34.615 0.00 0.00 31.82 2.24
2266 4093 8.242053 TGTGCATGTTACTACTCTAAGTTACTC 58.758 37.037 0.00 0.00 31.82 2.59
2267 4094 7.701501 GTGCATGTTACTACTCTAAGTTACTCC 59.298 40.741 0.00 0.00 31.82 3.85
2268 4095 7.147949 TGCATGTTACTACTCTAAGTTACTCCC 60.148 40.741 0.00 0.00 31.82 4.30
2269 4096 7.683945 GCATGTTACTACTCTAAGTTACTCCCC 60.684 44.444 0.00 0.00 31.82 4.81
2270 4097 6.793478 TGTTACTACTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
2271 4098 6.660949 TGTTACTACTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
2272 4099 5.533333 ACTACTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
2273 4100 5.262804 ACTACTCTAAGTTACTCCCCACTG 58.737 45.833 0.00 0.00 0.00 3.66
2274 4101 4.129317 ACTCTAAGTTACTCCCCACTGT 57.871 45.455 0.00 0.00 0.00 3.55
2275 4102 3.833070 ACTCTAAGTTACTCCCCACTGTG 59.167 47.826 0.00 0.00 0.00 3.66
2276 4103 4.087182 CTCTAAGTTACTCCCCACTGTGA 58.913 47.826 9.86 0.00 0.00 3.58
2277 4104 3.830755 TCTAAGTTACTCCCCACTGTGAC 59.169 47.826 9.86 0.00 0.00 3.67
2278 4105 2.400467 AGTTACTCCCCACTGTGACT 57.600 50.000 9.86 0.00 0.00 3.41
2279 4106 3.537795 AGTTACTCCCCACTGTGACTA 57.462 47.619 9.86 0.00 32.48 2.59
2280 4107 3.432378 AGTTACTCCCCACTGTGACTAG 58.568 50.000 9.86 5.62 32.48 2.57
2281 4108 3.163467 GTTACTCCCCACTGTGACTAGT 58.837 50.000 9.86 10.99 0.00 2.57
2282 4109 1.926108 ACTCCCCACTGTGACTAGTC 58.074 55.000 16.32 16.32 0.00 2.59
2297 4124 8.418597 TGTGACTAGTCTAAACATAGAAGGTT 57.581 34.615 23.01 0.00 0.00 3.50
2340 4167 4.783667 TTTTTGGACCGACGAGGG 57.216 55.556 0.00 1.14 46.96 4.30
2341 4168 1.071814 TTTTTGGACCGACGAGGGG 59.928 57.895 0.00 0.00 46.96 4.79
2342 4169 1.698067 TTTTTGGACCGACGAGGGGT 61.698 55.000 0.00 1.92 46.96 4.95
2343 4170 2.386064 TTTTGGACCGACGAGGGGTG 62.386 60.000 0.00 0.00 46.96 4.61
2377 4204 2.915869 GGCTTCCCCGCCTGAATA 59.084 61.111 0.00 0.00 46.63 1.75
2378 4205 1.456287 GGCTTCCCCGCCTGAATAT 59.544 57.895 0.00 0.00 46.63 1.28
2379 4206 0.690762 GGCTTCCCCGCCTGAATATA 59.309 55.000 0.00 0.00 46.63 0.86
2380 4207 1.282157 GGCTTCCCCGCCTGAATATAT 59.718 52.381 0.00 0.00 46.63 0.86
2381 4208 2.633488 GCTTCCCCGCCTGAATATATC 58.367 52.381 0.00 0.00 0.00 1.63
2382 4209 2.027192 GCTTCCCCGCCTGAATATATCA 60.027 50.000 0.00 0.00 36.38 2.15
2383 4210 3.600388 CTTCCCCGCCTGAATATATCAC 58.400 50.000 0.00 0.00 33.47 3.06
2384 4211 1.906574 TCCCCGCCTGAATATATCACC 59.093 52.381 0.00 0.00 33.47 4.02
2385 4212 1.628340 CCCCGCCTGAATATATCACCA 59.372 52.381 0.00 0.00 33.47 4.17
2389 4489 4.565444 CCCGCCTGAATATATCACCAATGA 60.565 45.833 0.00 0.00 39.83 2.57
2411 4511 4.370364 AAGCCGCATATGTTTCGAAAAT 57.630 36.364 13.10 10.80 0.00 1.82
2420 4520 6.737750 GCATATGTTTCGAAAATTGCTTTTGG 59.262 34.615 13.10 0.00 34.73 3.28
2438 4538 3.687321 GAGCTCGGCCTCCATGCAA 62.687 63.158 0.00 0.00 0.00 4.08
2445 4545 2.679092 CCTCCATGCAAGCCTCCA 59.321 61.111 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
556 910 2.519780 GGGATCCTCGTCGAGCCT 60.520 66.667 17.02 5.63 38.43 4.58
681 1035 3.642848 ACACCTGCCATGTCTTTTTCATT 59.357 39.130 0.00 0.00 0.00 2.57
682 1036 3.006110 CACACCTGCCATGTCTTTTTCAT 59.994 43.478 0.00 0.00 0.00 2.57
683 1037 2.361757 CACACCTGCCATGTCTTTTTCA 59.638 45.455 0.00 0.00 0.00 2.69
684 1038 2.622942 TCACACCTGCCATGTCTTTTTC 59.377 45.455 0.00 0.00 0.00 2.29
685 1039 2.665165 TCACACCTGCCATGTCTTTTT 58.335 42.857 0.00 0.00 0.00 1.94
686 1040 2.363306 TCACACCTGCCATGTCTTTT 57.637 45.000 0.00 0.00 0.00 2.27
687 1041 2.592102 ATCACACCTGCCATGTCTTT 57.408 45.000 0.00 0.00 0.00 2.52
688 1042 3.614092 CTTATCACACCTGCCATGTCTT 58.386 45.455 0.00 0.00 0.00 3.01
689 1043 2.681976 GCTTATCACACCTGCCATGTCT 60.682 50.000 0.00 0.00 0.00 3.41
690 1044 1.672881 GCTTATCACACCTGCCATGTC 59.327 52.381 0.00 0.00 0.00 3.06
691 1045 1.004628 TGCTTATCACACCTGCCATGT 59.995 47.619 0.00 0.00 0.00 3.21
692 1046 1.753930 TGCTTATCACACCTGCCATG 58.246 50.000 0.00 0.00 0.00 3.66
693 1047 2.304092 CATGCTTATCACACCTGCCAT 58.696 47.619 0.00 0.00 0.00 4.40
694 1048 1.753930 CATGCTTATCACACCTGCCA 58.246 50.000 0.00 0.00 0.00 4.92
695 1049 0.383231 GCATGCTTATCACACCTGCC 59.617 55.000 11.37 0.00 0.00 4.85
696 1050 1.097232 TGCATGCTTATCACACCTGC 58.903 50.000 20.33 0.00 0.00 4.85
697 1051 3.349488 CATGCATGCTTATCACACCTG 57.651 47.619 20.33 0.00 0.00 4.00
728 1082 4.812814 GCCATCCATTTCGTTGGC 57.187 55.556 0.00 0.00 46.94 4.52
734 1088 2.034305 GCATGTCTCAGCCATCCATTTC 59.966 50.000 0.00 0.00 0.00 2.17
756 1110 0.861837 CGTTGACACTTGACTCCTGC 59.138 55.000 0.00 0.00 0.00 4.85
1074 1429 2.041819 CCCCTCCCTCTAGCCGTT 60.042 66.667 0.00 0.00 0.00 4.44
1176 1531 0.815734 CGATGGTCGGGTACTTGTCT 59.184 55.000 0.00 0.00 36.00 3.41
1262 1617 4.719369 GGGACGCGCTTGAGACGT 62.719 66.667 5.73 0.00 43.83 4.34
1309 1664 0.035317 ATGGTGTCGCAGAAGCTCAA 59.965 50.000 0.00 0.00 39.69 3.02
1446 1801 4.003788 CCGGACTGCTGGAACGGT 62.004 66.667 0.00 0.00 43.76 4.83
1533 1888 4.021229 AGGGTACGTCTCACATCATGTTA 58.979 43.478 0.00 0.00 0.00 2.41
1940 3767 5.049405 ACAAGGAAGATTTTTCAGCGTACTG 60.049 40.000 0.00 0.00 45.95 2.74
1961 3788 5.918011 GCCGACAAATGAAATAGTGAAACAA 59.082 36.000 0.00 0.00 41.43 2.83
1967 3794 3.119884 TGCAGCCGACAAATGAAATAGTG 60.120 43.478 0.00 0.00 0.00 2.74
1971 3798 1.401409 CGTGCAGCCGACAAATGAAAT 60.401 47.619 0.00 0.00 0.00 2.17
2007 3834 1.971357 CTTCCACTGTGGGTAGTCTGT 59.029 52.381 25.67 0.00 38.32 3.41
2008 3835 1.971357 ACTTCCACTGTGGGTAGTCTG 59.029 52.381 25.67 10.84 38.32 3.51
2009 3836 2.400467 ACTTCCACTGTGGGTAGTCT 57.600 50.000 25.67 7.00 38.32 3.24
2010 3837 3.322828 TGTTACTTCCACTGTGGGTAGTC 59.677 47.826 27.28 18.94 38.32 2.59
2011 3838 3.311091 TGTTACTTCCACTGTGGGTAGT 58.689 45.455 26.90 26.90 38.32 2.73
2012 3839 4.553330 ATGTTACTTCCACTGTGGGTAG 57.447 45.455 25.67 22.86 38.32 3.18
2013 3840 6.436738 TTTATGTTACTTCCACTGTGGGTA 57.563 37.500 25.67 17.47 38.32 3.69
2014 3841 4.986054 TTATGTTACTTCCACTGTGGGT 57.014 40.909 25.67 18.45 38.32 4.51
2015 3842 5.943416 TCATTTATGTTACTTCCACTGTGGG 59.057 40.000 25.67 13.63 38.32 4.61
2016 3843 7.630242 ATCATTTATGTTACTTCCACTGTGG 57.370 36.000 20.86 20.86 39.43 4.17
2017 3844 9.988350 GTTATCATTTATGTTACTTCCACTGTG 57.012 33.333 0.00 0.00 0.00 3.66
2018 3845 9.733556 TGTTATCATTTATGTTACTTCCACTGT 57.266 29.630 0.00 0.00 0.00 3.55
2034 3861 9.277783 GCCTAGATAAGTGTGATGTTATCATTT 57.722 33.333 0.00 0.00 42.04 2.32
2035 3862 8.432013 TGCCTAGATAAGTGTGATGTTATCATT 58.568 33.333 0.00 0.00 42.04 2.57
2036 3863 7.966812 TGCCTAGATAAGTGTGATGTTATCAT 58.033 34.615 0.00 0.00 42.04 2.45
2037 3864 7.360113 TGCCTAGATAAGTGTGATGTTATCA 57.640 36.000 0.00 0.00 37.88 2.15
2038 3865 8.662781 TTTGCCTAGATAAGTGTGATGTTATC 57.337 34.615 0.00 0.00 36.34 1.75
2039 3866 9.632638 ATTTTGCCTAGATAAGTGTGATGTTAT 57.367 29.630 0.00 0.00 0.00 1.89
2041 3868 7.944729 ATTTTGCCTAGATAAGTGTGATGTT 57.055 32.000 0.00 0.00 0.00 2.71
2042 3869 9.461312 TTTATTTTGCCTAGATAAGTGTGATGT 57.539 29.630 0.00 0.00 0.00 3.06
2045 3872 9.679661 TCATTTATTTTGCCTAGATAAGTGTGA 57.320 29.630 0.00 0.00 30.01 3.58
2052 3879 9.625747 TGTCACATCATTTATTTTGCCTAGATA 57.374 29.630 0.00 0.00 0.00 1.98
2053 3880 8.523915 TGTCACATCATTTATTTTGCCTAGAT 57.476 30.769 0.00 0.00 0.00 1.98
2054 3881 7.936496 TGTCACATCATTTATTTTGCCTAGA 57.064 32.000 0.00 0.00 0.00 2.43
2055 3882 8.192774 ACATGTCACATCATTTATTTTGCCTAG 58.807 33.333 0.00 0.00 0.00 3.02
2056 3883 8.065473 ACATGTCACATCATTTATTTTGCCTA 57.935 30.769 0.00 0.00 0.00 3.93
2057 3884 6.938507 ACATGTCACATCATTTATTTTGCCT 58.061 32.000 0.00 0.00 0.00 4.75
2058 3885 8.700722 TTACATGTCACATCATTTATTTTGCC 57.299 30.769 0.00 0.00 0.00 4.52
2082 3909 9.412460 TCACATGCCTATCTTTCTTCATTAATT 57.588 29.630 0.00 0.00 0.00 1.40
2083 3910 8.985315 TCACATGCCTATCTTTCTTCATTAAT 57.015 30.769 0.00 0.00 0.00 1.40
2084 3911 8.985315 ATCACATGCCTATCTTTCTTCATTAA 57.015 30.769 0.00 0.00 0.00 1.40
2086 3913 8.844244 GTTATCACATGCCTATCTTTCTTCATT 58.156 33.333 0.00 0.00 0.00 2.57
2087 3914 7.994911 TGTTATCACATGCCTATCTTTCTTCAT 59.005 33.333 0.00 0.00 0.00 2.57
2088 3915 7.337938 TGTTATCACATGCCTATCTTTCTTCA 58.662 34.615 0.00 0.00 0.00 3.02
2089 3916 7.792374 TGTTATCACATGCCTATCTTTCTTC 57.208 36.000 0.00 0.00 0.00 2.87
2090 3917 9.499479 CTATGTTATCACATGCCTATCTTTCTT 57.501 33.333 2.68 0.00 43.92 2.52
2091 3918 7.605691 GCTATGTTATCACATGCCTATCTTTCT 59.394 37.037 2.68 0.00 43.92 2.52
2092 3919 7.605691 AGCTATGTTATCACATGCCTATCTTTC 59.394 37.037 2.68 0.00 43.92 2.62
2093 3920 7.456725 AGCTATGTTATCACATGCCTATCTTT 58.543 34.615 2.68 0.00 43.92 2.52
2094 3921 7.013823 AGCTATGTTATCACATGCCTATCTT 57.986 36.000 2.68 0.00 43.92 2.40
2095 3922 6.617782 AGCTATGTTATCACATGCCTATCT 57.382 37.500 2.68 0.00 43.92 1.98
2096 3923 7.551585 ACTAGCTATGTTATCACATGCCTATC 58.448 38.462 2.68 0.00 43.92 2.08
2097 3924 7.487822 ACTAGCTATGTTATCACATGCCTAT 57.512 36.000 2.68 0.00 43.92 2.57
2098 3925 6.918067 ACTAGCTATGTTATCACATGCCTA 57.082 37.500 2.68 2.97 43.92 3.93
2099 3926 5.815233 ACTAGCTATGTTATCACATGCCT 57.185 39.130 2.68 2.02 43.92 4.75
2100 3927 7.116948 CAGTAACTAGCTATGTTATCACATGCC 59.883 40.741 14.69 0.00 43.92 4.40
2101 3928 7.653713 ACAGTAACTAGCTATGTTATCACATGC 59.346 37.037 14.69 4.91 43.92 4.06
2110 3937 8.528643 TGTGATGTTACAGTAACTAGCTATGTT 58.471 33.333 21.56 7.75 39.38 2.71
2111 3938 7.974501 GTGTGATGTTACAGTAACTAGCTATGT 59.025 37.037 21.56 0.00 39.38 2.29
2112 3939 7.973944 TGTGTGATGTTACAGTAACTAGCTATG 59.026 37.037 21.56 0.00 39.38 2.23
2113 3940 8.063200 TGTGTGATGTTACAGTAACTAGCTAT 57.937 34.615 21.56 8.59 39.38 2.97
2114 3941 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
2115 3942 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
2116 3943 8.873215 ATATGTGTGATGTTACAGTAACTAGC 57.127 34.615 21.56 12.59 39.38 3.42
2119 3946 9.371136 CTTGATATGTGTGATGTTACAGTAACT 57.629 33.333 21.56 9.41 39.38 2.24
2120 3947 9.366216 TCTTGATATGTGTGATGTTACAGTAAC 57.634 33.333 15.58 15.58 39.11 2.50
2121 3948 9.936759 TTCTTGATATGTGTGATGTTACAGTAA 57.063 29.630 0.00 0.00 0.00 2.24
2122 3949 9.936759 TTTCTTGATATGTGTGATGTTACAGTA 57.063 29.630 0.00 0.00 0.00 2.74
2123 3950 8.846943 TTTCTTGATATGTGTGATGTTACAGT 57.153 30.769 0.00 0.00 0.00 3.55
2124 3951 9.764870 CTTTTCTTGATATGTGTGATGTTACAG 57.235 33.333 0.00 0.00 0.00 2.74
2125 3952 9.500785 TCTTTTCTTGATATGTGTGATGTTACA 57.499 29.630 0.00 0.00 0.00 2.41
2126 3953 9.979270 CTCTTTTCTTGATATGTGTGATGTTAC 57.021 33.333 0.00 0.00 0.00 2.50
2127 3954 9.166173 CCTCTTTTCTTGATATGTGTGATGTTA 57.834 33.333 0.00 0.00 0.00 2.41
2128 3955 7.884877 TCCTCTTTTCTTGATATGTGTGATGTT 59.115 33.333 0.00 0.00 0.00 2.71
2129 3956 7.397221 TCCTCTTTTCTTGATATGTGTGATGT 58.603 34.615 0.00 0.00 0.00 3.06
2130 3957 7.551974 ACTCCTCTTTTCTTGATATGTGTGATG 59.448 37.037 0.00 0.00 0.00 3.07
2131 3958 7.628234 ACTCCTCTTTTCTTGATATGTGTGAT 58.372 34.615 0.00 0.00 0.00 3.06
2132 3959 7.009179 ACTCCTCTTTTCTTGATATGTGTGA 57.991 36.000 0.00 0.00 0.00 3.58
2133 3960 7.102346 AGACTCCTCTTTTCTTGATATGTGTG 58.898 38.462 0.00 0.00 0.00 3.82
2134 3961 7.251321 AGACTCCTCTTTTCTTGATATGTGT 57.749 36.000 0.00 0.00 0.00 3.72
2135 3962 8.253810 TGTAGACTCCTCTTTTCTTGATATGTG 58.746 37.037 0.00 0.00 0.00 3.21
2136 3963 8.367660 TGTAGACTCCTCTTTTCTTGATATGT 57.632 34.615 0.00 0.00 0.00 2.29
2137 3964 9.092876 GTTGTAGACTCCTCTTTTCTTGATATG 57.907 37.037 0.00 0.00 0.00 1.78
2138 3965 8.261522 GGTTGTAGACTCCTCTTTTCTTGATAT 58.738 37.037 0.00 0.00 0.00 1.63
2139 3966 7.455008 AGGTTGTAGACTCCTCTTTTCTTGATA 59.545 37.037 0.00 0.00 0.00 2.15
2140 3967 6.271159 AGGTTGTAGACTCCTCTTTTCTTGAT 59.729 38.462 0.00 0.00 0.00 2.57
2141 3968 5.602978 AGGTTGTAGACTCCTCTTTTCTTGA 59.397 40.000 0.00 0.00 0.00 3.02
2142 3969 5.859495 AGGTTGTAGACTCCTCTTTTCTTG 58.141 41.667 0.00 0.00 0.00 3.02
2143 3970 7.613551 TTAGGTTGTAGACTCCTCTTTTCTT 57.386 36.000 0.00 0.00 33.34 2.52
2144 3971 7.800300 ATTAGGTTGTAGACTCCTCTTTTCT 57.200 36.000 0.00 0.00 33.34 2.52
2145 3972 9.939802 TTTATTAGGTTGTAGACTCCTCTTTTC 57.060 33.333 0.00 0.00 33.34 2.29
2147 3974 9.892130 CATTTATTAGGTTGTAGACTCCTCTTT 57.108 33.333 0.00 0.00 33.34 2.52
2148 3975 9.268282 TCATTTATTAGGTTGTAGACTCCTCTT 57.732 33.333 0.00 0.00 33.34 2.85
2149 3976 8.840200 TCATTTATTAGGTTGTAGACTCCTCT 57.160 34.615 0.00 0.00 33.34 3.69
2150 3977 9.482627 CATCATTTATTAGGTTGTAGACTCCTC 57.517 37.037 0.00 0.00 33.34 3.71
2151 3978 8.993424 ACATCATTTATTAGGTTGTAGACTCCT 58.007 33.333 0.00 0.00 35.60 3.69
2152 3979 9.046296 CACATCATTTATTAGGTTGTAGACTCC 57.954 37.037 0.00 0.00 0.00 3.85
2153 3980 9.817809 TCACATCATTTATTAGGTTGTAGACTC 57.182 33.333 0.00 0.00 0.00 3.36
2156 3983 9.056005 GCATCACATCATTTATTAGGTTGTAGA 57.944 33.333 0.00 0.00 0.00 2.59
2157 3984 8.839343 TGCATCACATCATTTATTAGGTTGTAG 58.161 33.333 0.00 0.00 0.00 2.74
2158 3985 8.744568 TGCATCACATCATTTATTAGGTTGTA 57.255 30.769 0.00 0.00 0.00 2.41
2159 3986 7.643569 TGCATCACATCATTTATTAGGTTGT 57.356 32.000 0.00 0.00 0.00 3.32
2160 3987 8.354426 TCATGCATCACATCATTTATTAGGTTG 58.646 33.333 0.00 0.00 36.64 3.77
2161 3988 8.355169 GTCATGCATCACATCATTTATTAGGTT 58.645 33.333 0.00 0.00 36.64 3.50
2162 3989 7.503230 TGTCATGCATCACATCATTTATTAGGT 59.497 33.333 0.00 0.00 36.64 3.08
2163 3990 7.806487 GTGTCATGCATCACATCATTTATTAGG 59.194 37.037 6.70 0.00 36.64 2.69
2164 3991 8.347035 TGTGTCATGCATCACATCATTTATTAG 58.653 33.333 6.70 0.00 39.23 1.73
2165 3992 8.223177 TGTGTCATGCATCACATCATTTATTA 57.777 30.769 6.70 0.00 39.23 0.98
2166 3993 7.102847 TGTGTCATGCATCACATCATTTATT 57.897 32.000 6.70 0.00 39.23 1.40
2167 3994 6.702716 TGTGTCATGCATCACATCATTTAT 57.297 33.333 6.70 0.00 39.23 1.40
2168 3995 6.072064 TGTTGTGTCATGCATCACATCATTTA 60.072 34.615 20.21 6.32 42.77 1.40
2169 3996 5.165676 GTTGTGTCATGCATCACATCATTT 58.834 37.500 18.72 0.00 42.77 2.32
2170 3997 4.218852 TGTTGTGTCATGCATCACATCATT 59.781 37.500 20.21 0.00 42.77 2.57
2171 3998 3.759618 TGTTGTGTCATGCATCACATCAT 59.240 39.130 20.21 0.00 42.77 2.45
2172 3999 3.058085 GTGTTGTGTCATGCATCACATCA 60.058 43.478 20.21 20.21 42.77 3.07
2173 4000 3.058085 TGTGTTGTGTCATGCATCACATC 60.058 43.478 18.72 17.70 42.77 3.06
2174 4001 2.885894 TGTGTTGTGTCATGCATCACAT 59.114 40.909 18.72 0.00 42.77 3.21
2175 4002 2.295885 TGTGTTGTGTCATGCATCACA 58.704 42.857 15.23 15.23 41.81 3.58
2176 4003 3.564235 ATGTGTTGTGTCATGCATCAC 57.436 42.857 10.76 10.76 35.43 3.06
2177 4004 4.701171 ACATATGTGTTGTGTCATGCATCA 59.299 37.500 7.78 0.00 34.01 3.07
2178 4005 5.239359 ACATATGTGTTGTGTCATGCATC 57.761 39.130 7.78 0.00 34.01 3.91
2179 4006 5.648178 AACATATGTGTTGTGTCATGCAT 57.352 34.783 9.63 0.00 46.43 3.96
2189 4016 8.746927 CCACAGTGGGTAGTAACATATGTGTTG 61.747 44.444 17.19 0.62 40.34 3.33
2190 4017 6.799296 CCACAGTGGGTAGTAACATATGTGTT 60.799 42.308 12.40 12.73 41.76 3.32
2191 4018 5.338056 CCACAGTGGGTAGTAACATATGTGT 60.338 44.000 12.40 2.63 36.37 3.72
2192 4019 5.105106 TCCACAGTGGGTAGTAACATATGTG 60.105 44.000 20.14 8.26 38.32 3.21
2193 4020 5.027460 TCCACAGTGGGTAGTAACATATGT 58.973 41.667 20.14 1.41 38.32 2.29
2194 4021 5.453339 CCTCCACAGTGGGTAGTAACATATG 60.453 48.000 20.14 0.00 38.32 1.78
2195 4022 4.654262 CCTCCACAGTGGGTAGTAACATAT 59.346 45.833 20.14 0.00 38.32 1.78
2196 4023 4.028131 CCTCCACAGTGGGTAGTAACATA 58.972 47.826 20.14 0.00 38.32 2.29
2197 4024 2.838202 CCTCCACAGTGGGTAGTAACAT 59.162 50.000 20.14 0.00 38.32 2.71
2198 4025 2.253610 CCTCCACAGTGGGTAGTAACA 58.746 52.381 20.14 0.00 38.32 2.41
2199 4026 2.254508 ACCTCCACAGTGGGTAGTAAC 58.745 52.381 20.14 0.00 38.32 2.50
2200 4027 2.708037 ACCTCCACAGTGGGTAGTAA 57.292 50.000 20.14 0.00 38.32 2.24
2201 4028 3.377253 CTACCTCCACAGTGGGTAGTA 57.623 52.381 20.14 16.08 44.30 1.82
2202 4029 2.233305 CTACCTCCACAGTGGGTAGT 57.767 55.000 20.14 15.82 44.30 2.73
2204 4031 3.181419 TGTTACTACCTCCACAGTGGGTA 60.181 47.826 20.14 13.24 38.32 3.69
2205 4032 2.254508 GTTACTACCTCCACAGTGGGT 58.745 52.381 20.14 12.79 38.32 4.51
2206 4033 2.253610 TGTTACTACCTCCACAGTGGG 58.746 52.381 20.14 10.16 38.32 4.61
2207 4034 4.954202 TCTATGTTACTACCTCCACAGTGG 59.046 45.833 14.19 14.19 39.43 4.00
2208 4035 5.652891 AGTCTATGTTACTACCTCCACAGTG 59.347 44.000 0.00 0.00 0.00 3.66
2209 4036 5.828871 AGTCTATGTTACTACCTCCACAGT 58.171 41.667 0.00 0.00 0.00 3.55
2210 4037 7.055378 ACTAGTCTATGTTACTACCTCCACAG 58.945 42.308 0.00 0.00 0.00 3.66
2211 4038 6.966751 ACTAGTCTATGTTACTACCTCCACA 58.033 40.000 0.00 0.00 0.00 4.17
2212 4039 8.835439 GTTACTAGTCTATGTTACTACCTCCAC 58.165 40.741 0.00 0.00 0.00 4.02
2213 4040 8.551440 TGTTACTAGTCTATGTTACTACCTCCA 58.449 37.037 0.00 0.00 0.00 3.86
2214 4041 8.970859 TGTTACTAGTCTATGTTACTACCTCC 57.029 38.462 0.00 0.00 0.00 4.30
2216 4043 9.917887 ACATGTTACTAGTCTATGTTACTACCT 57.082 33.333 0.00 0.00 0.00 3.08
2217 4044 9.947669 CACATGTTACTAGTCTATGTTACTACC 57.052 37.037 13.72 0.00 30.15 3.18
2218 4045 9.448294 GCACATGTTACTAGTCTATGTTACTAC 57.552 37.037 13.72 3.01 30.15 2.73
2219 4046 9.181061 TGCACATGTTACTAGTCTATGTTACTA 57.819 33.333 13.72 0.00 30.15 1.82
2220 4047 8.063200 TGCACATGTTACTAGTCTATGTTACT 57.937 34.615 13.72 0.00 30.15 2.24
2221 4048 8.755941 CATGCACATGTTACTAGTCTATGTTAC 58.244 37.037 13.72 10.81 34.23 2.50
2222 4049 8.871686 CATGCACATGTTACTAGTCTATGTTA 57.128 34.615 13.72 8.80 34.23 2.41
2223 4050 7.776933 CATGCACATGTTACTAGTCTATGTT 57.223 36.000 13.72 2.22 34.23 2.71
2238 4065 7.834068 AACTTAGAGTAGTAACATGCACATG 57.166 36.000 9.06 9.06 44.15 3.21
2239 4066 8.750298 AGTAACTTAGAGTAGTAACATGCACAT 58.250 33.333 0.00 0.00 0.00 3.21
2240 4067 8.118976 AGTAACTTAGAGTAGTAACATGCACA 57.881 34.615 0.00 0.00 0.00 4.57
2241 4068 7.701501 GGAGTAACTTAGAGTAGTAACATGCAC 59.298 40.741 0.00 0.00 0.00 4.57
2242 4069 7.147949 GGGAGTAACTTAGAGTAGTAACATGCA 60.148 40.741 0.00 0.00 0.00 3.96
2243 4070 7.201835 GGGAGTAACTTAGAGTAGTAACATGC 58.798 42.308 0.00 0.00 0.00 4.06
2244 4071 7.341256 TGGGGAGTAACTTAGAGTAGTAACATG 59.659 40.741 0.00 0.00 0.00 3.21
2245 4072 7.341512 GTGGGGAGTAACTTAGAGTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
2246 4073 6.660949 GTGGGGAGTAACTTAGAGTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
2247 4074 6.889177 AGTGGGGAGTAACTTAGAGTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
2248 4075 6.888632 CAGTGGGGAGTAACTTAGAGTAGTAA 59.111 42.308 0.00 0.00 0.00 2.24
2249 4076 6.012157 ACAGTGGGGAGTAACTTAGAGTAGTA 60.012 42.308 0.00 0.00 0.00 1.82
2250 4077 5.222296 ACAGTGGGGAGTAACTTAGAGTAGT 60.222 44.000 0.00 0.00 0.00 2.73
2251 4078 5.125739 CACAGTGGGGAGTAACTTAGAGTAG 59.874 48.000 0.00 0.00 0.00 2.57
2252 4079 5.014858 CACAGTGGGGAGTAACTTAGAGTA 58.985 45.833 0.00 0.00 0.00 2.59
2253 4080 3.833070 CACAGTGGGGAGTAACTTAGAGT 59.167 47.826 0.00 0.00 0.00 3.24
2254 4081 4.082136 GTCACAGTGGGGAGTAACTTAGAG 60.082 50.000 0.00 0.00 0.00 2.43
2255 4082 3.830755 GTCACAGTGGGGAGTAACTTAGA 59.169 47.826 0.00 0.00 0.00 2.10
2256 4083 3.833070 AGTCACAGTGGGGAGTAACTTAG 59.167 47.826 0.00 0.00 0.00 2.18
2257 4084 3.853207 AGTCACAGTGGGGAGTAACTTA 58.147 45.455 0.00 0.00 0.00 2.24
2258 4085 2.690840 AGTCACAGTGGGGAGTAACTT 58.309 47.619 0.00 0.00 0.00 2.66
2259 4086 2.400467 AGTCACAGTGGGGAGTAACT 57.600 50.000 0.00 0.00 0.00 2.24
2260 4087 3.163467 ACTAGTCACAGTGGGGAGTAAC 58.837 50.000 0.00 0.00 0.00 2.50
2261 4088 3.075582 AGACTAGTCACAGTGGGGAGTAA 59.924 47.826 24.44 0.00 0.00 2.24
2262 4089 2.648304 AGACTAGTCACAGTGGGGAGTA 59.352 50.000 24.44 0.00 0.00 2.59
2263 4090 1.429687 AGACTAGTCACAGTGGGGAGT 59.570 52.381 24.44 1.39 0.00 3.85
2264 4091 2.223803 AGACTAGTCACAGTGGGGAG 57.776 55.000 24.44 0.00 0.00 4.30
2265 4092 3.820195 TTAGACTAGTCACAGTGGGGA 57.180 47.619 24.44 0.00 0.00 4.81
2266 4093 3.576982 TGTTTAGACTAGTCACAGTGGGG 59.423 47.826 24.44 0.00 0.00 4.96
2267 4094 4.866508 TGTTTAGACTAGTCACAGTGGG 57.133 45.455 24.44 0.00 0.00 4.61
2268 4095 7.392494 TCTATGTTTAGACTAGTCACAGTGG 57.608 40.000 24.44 12.98 29.27 4.00
2269 4096 7.971168 CCTTCTATGTTTAGACTAGTCACAGTG 59.029 40.741 24.44 15.03 34.15 3.66
2270 4097 7.670559 ACCTTCTATGTTTAGACTAGTCACAGT 59.329 37.037 24.44 10.09 34.15 3.55
2271 4098 8.057536 ACCTTCTATGTTTAGACTAGTCACAG 57.942 38.462 24.44 9.53 34.15 3.66
2272 4099 8.418597 AACCTTCTATGTTTAGACTAGTCACA 57.581 34.615 24.44 19.17 34.15 3.58
2273 4100 8.741841 AGAACCTTCTATGTTTAGACTAGTCAC 58.258 37.037 24.44 14.29 34.15 3.67
2274 4101 8.880991 AGAACCTTCTATGTTTAGACTAGTCA 57.119 34.615 24.44 8.16 34.15 3.41
2276 4103 9.930693 CAAAGAACCTTCTATGTTTAGACTAGT 57.069 33.333 0.00 0.00 36.28 2.57
2277 4104 8.874816 GCAAAGAACCTTCTATGTTTAGACTAG 58.125 37.037 0.00 0.00 36.28 2.57
2278 4105 7.822822 GGCAAAGAACCTTCTATGTTTAGACTA 59.177 37.037 0.00 0.00 36.28 2.59
2279 4106 6.655425 GGCAAAGAACCTTCTATGTTTAGACT 59.345 38.462 0.00 0.00 36.28 3.24
2280 4107 6.430000 TGGCAAAGAACCTTCTATGTTTAGAC 59.570 38.462 0.00 0.00 36.28 2.59
2281 4108 6.539173 TGGCAAAGAACCTTCTATGTTTAGA 58.461 36.000 0.00 0.00 36.28 2.10
2282 4109 6.817765 TGGCAAAGAACCTTCTATGTTTAG 57.182 37.500 0.00 0.00 36.28 1.85
2361 4188 2.027192 TGATATATTCAGGCGGGGAAGC 60.027 50.000 0.00 0.00 0.00 3.86
2362 4189 3.600388 GTGATATATTCAGGCGGGGAAG 58.400 50.000 0.00 0.00 34.17 3.46
2363 4190 2.304761 GGTGATATATTCAGGCGGGGAA 59.695 50.000 0.00 0.00 34.17 3.97
2364 4191 1.906574 GGTGATATATTCAGGCGGGGA 59.093 52.381 0.00 0.00 34.17 4.81
2365 4192 1.628340 TGGTGATATATTCAGGCGGGG 59.372 52.381 0.00 0.00 34.17 5.73
2366 4193 3.417069 TTGGTGATATATTCAGGCGGG 57.583 47.619 0.00 0.00 34.17 6.13
2367 4194 4.578871 TCATTGGTGATATATTCAGGCGG 58.421 43.478 0.00 0.00 34.17 6.13
2368 4195 6.558771 TTTCATTGGTGATATATTCAGGCG 57.441 37.500 0.00 0.00 34.17 5.52
2369 4196 6.385033 GCTTTCATTGGTGATATATTCAGGC 58.615 40.000 0.00 0.00 34.17 4.85
2370 4197 6.348786 CGGCTTTCATTGGTGATATATTCAGG 60.349 42.308 0.00 0.00 34.17 3.86
2371 4198 6.605849 CGGCTTTCATTGGTGATATATTCAG 58.394 40.000 0.00 0.00 34.17 3.02
2372 4199 5.048782 GCGGCTTTCATTGGTGATATATTCA 60.049 40.000 0.00 0.00 33.56 2.57
2373 4200 5.048782 TGCGGCTTTCATTGGTGATATATTC 60.049 40.000 0.00 0.00 33.56 1.75
2374 4201 4.826733 TGCGGCTTTCATTGGTGATATATT 59.173 37.500 0.00 0.00 33.56 1.28
2375 4202 4.397420 TGCGGCTTTCATTGGTGATATAT 58.603 39.130 0.00 0.00 33.56 0.86
2376 4203 3.814625 TGCGGCTTTCATTGGTGATATA 58.185 40.909 0.00 0.00 33.56 0.86
2377 4204 2.653726 TGCGGCTTTCATTGGTGATAT 58.346 42.857 0.00 0.00 33.56 1.63
2378 4205 2.121291 TGCGGCTTTCATTGGTGATA 57.879 45.000 0.00 0.00 33.56 2.15
2379 4206 1.477553 ATGCGGCTTTCATTGGTGAT 58.522 45.000 0.00 0.00 33.56 3.06
2380 4207 2.121291 TATGCGGCTTTCATTGGTGA 57.879 45.000 0.00 0.00 0.00 4.02
2381 4208 2.099592 ACATATGCGGCTTTCATTGGTG 59.900 45.455 1.58 0.00 0.00 4.17
2382 4209 2.378038 ACATATGCGGCTTTCATTGGT 58.622 42.857 1.58 0.00 0.00 3.67
2383 4210 3.441496 AACATATGCGGCTTTCATTGG 57.559 42.857 1.58 0.00 0.00 3.16
2384 4211 3.483196 CGAAACATATGCGGCTTTCATTG 59.517 43.478 13.74 0.00 0.00 2.82
2385 4212 3.376859 TCGAAACATATGCGGCTTTCATT 59.623 39.130 13.74 0.00 0.00 2.57
2389 4489 3.840890 TTTCGAAACATATGCGGCTTT 57.159 38.095 6.47 0.00 0.00 3.51
2420 4520 3.687321 TTGCATGGAGGCCGAGCTC 62.687 63.158 2.73 2.73 0.00 4.09
2423 4523 3.207669 GCTTGCATGGAGGCCGAG 61.208 66.667 10.38 0.00 0.00 4.63
2426 4526 2.832201 GAGGCTTGCATGGAGGCC 60.832 66.667 29.69 29.69 44.38 5.19
2438 4538 9.743581 ATTTTATGAATTTTGAATTTGGAGGCT 57.256 25.926 0.00 0.00 0.00 4.58
2466 4566 7.634671 TCATGCATATCTGACTTGTTTTCAT 57.365 32.000 0.00 0.00 0.00 2.57
2503 4603 7.706281 TGTGCCTTAAAAATTTACACACATG 57.294 32.000 0.00 0.00 32.06 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.