AutoCloner

Multiple sequence alignment - TraesCS1B01G146900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G146900	chr1B	100.000	4107	0	0	1	4107	207264824	207268930	0.000000e+00	7585.0
1	TraesCS1B01G146900	chr1B	100.000	4034	0	0	4436	8469	207269259	207273292	0.000000e+00	7450.0
2	TraesCS1B01G146900	chr1B	81.806	720	106	15	4456	5154	464114573	464113858	1.650000e-161	580.0
3	TraesCS1B01G146900	chr1B	92.000	200	14	2	8120	8318	207312366	207312564	6.730000e-71	279.0
4	TraesCS1B01G146900	chr1B	91.500	200	15	2	8120	8318	207286739	207286937	3.130000e-69	274.0
5	TraesCS1B01G146900	chr1B	97.368	114	3	0	2060	2173	687253940	687254053	2.510000e-45	195.0
6	TraesCS1B01G146900	chr1B	100.000	85	0	0	8722	8806	207273545	207273629	3.290000e-34	158.0
7	TraesCS1B01G146900	chr1B	98.765	81	1	0	8726	8806	207281736	207281816	2.560000e-30	145.0
8	TraesCS1B01G146900	chr1B	98.765	81	1	0	8726	8806	207305734	207305814	2.560000e-30	145.0
9	TraesCS1B01G146900	chr1B	98.765	81	1	0	8726	8806	269932396	269932316	2.560000e-30	145.0
10	TraesCS1B01G146900	chr1B	89.189	111	8	4	3568	3675	223360164	223360273	1.540000e-27	135.0
11	TraesCS1B01G146900	chr1B	94.118	85	5	0	3387	3471	397429464	397429380	7.170000e-26	130.0
12	TraesCS1B01G146900	chr1D	95.523	4088	107	20	4436	8469	130610934	130614999	0.000000e+00	6466.0
13	TraesCS1B01G146900	chr1D	97.890	1422	27	3	2168	3588	130608812	130610231	0.000000e+00	2457.0
14	TraesCS1B01G146900	chr1D	96.074	1299	32	11	773	2064	130607527	130608813	0.000000e+00	2098.0
15	TraesCS1B01G146900	chr1D	97.511	442	9	1	3667	4106	130610229	130610670	0.000000e+00	754.0
16	TraesCS1B01G146900	chr1D	89.120	432	37	8	1	424	130606903	130607332	6.050000e-146	529.0
17	TraesCS1B01G146900	chr1D	85.945	434	50	6	1	424	130606232	130606664	3.750000e-123	453.0
18	TraesCS1B01G146900	chr1D	91.379	290	20	5	465	752	225049352	225049066	8.290000e-105	392.0
19	TraesCS1B01G146900	chr1D	91.003	289	23	3	465	752	225049960	225049674	3.860000e-103	387.0
20	TraesCS1B01G146900	chr1D	91.166	283	23	2	461	742	443782613	443782332	4.990000e-102	383.0
21	TraesCS1B01G146900	chr1D	92.500	200	14	1	8120	8318	130615667	130615866	1.450000e-72	285.0
22	TraesCS1B01G146900	chr1D	97.297	111	3	0	2059	2169	227655307	227655417	1.170000e-43	189.0
23	TraesCS1B01G146900	chr1A	96.419	2485	56	5	4444	6896	189961661	189964144	0.000000e+00	4065.0
24	TraesCS1B01G146900	chr1A	97.679	1422	30	3	2168	3588	189959730	189961149	0.000000e+00	2440.0
25	TraesCS1B01G146900	chr1A	95.376	930	27	6	773	1694	189958274	189959195	0.000000e+00	1465.0
26	TraesCS1B01G146900	chr1A	96.042	758	24	6	7585	8337	189964872	189965628	0.000000e+00	1229.0
27	TraesCS1B01G146900	chr1A	96.372	634	15	3	6903	7530	189964247	189964878	0.000000e+00	1037.0
28	TraesCS1B01G146900	chr1A	96.833	442	8	2	3667	4106	189961147	189961584	0.000000e+00	734.0
29	TraesCS1B01G146900	chr1A	95.989	374	10	5	1696	2064	189959358	189959731	3.520000e-168	603.0
30	TraesCS1B01G146900	chr1A	86.105	475	50	9	1	462	189957811	189958282	1.710000e-136	497.0
31	TraesCS1B01G146900	chr1A	93.000	200	13	1	8120	8318	189966348	189966547	3.110000e-74	291.0
32	TraesCS1B01G146900	chr1A	93.496	123	7	1	2048	2169	321291459	321291337	1.950000e-41	182.0
33	TraesCS1B01G146900	chr1A	94.118	85	5	0	3387	3471	368812597	368812513	7.170000e-26	130.0
34	TraesCS1B01G146900	chr1A	97.500	40	1	0	6558	6597	189964163	189964202	1.590000e-07	69.4
35	TraesCS1B01G146900	chr1A	100.000	29	0	0	7311	7339	189964199	189964227	4.000000e-03	54.7
36	TraesCS1B01G146900	chr2D	79.070	1892	227	91	5447	7242	48032029	48030211	0.000000e+00	1144.0
37	TraesCS1B01G146900	chr2D	82.618	489	57	9	4457	4932	275945399	275945872	2.960000e-109	407.0
38	TraesCS1B01G146900	chr2D	85.897	390	39	7	5439	5820	48032689	48032308	1.380000e-107	401.0
39	TraesCS1B01G146900	chr2D	92.143	280	21	1	465	743	586967377	586967656	2.300000e-105	394.0
40	TraesCS1B01G146900	chr2D	84.706	170	16	5	4985	5154	275946412	275946571	2.540000e-35	161.0
41	TraesCS1B01G146900	chr2D	82.796	93	11	4	95	184	37044435	37044525	2.640000e-10	78.7
42	TraesCS1B01G146900	chr2B	82.202	972	100	36	5444	6383	75972297	75973227	0.000000e+00	769.0
43	TraesCS1B01G146900	chr2B	83.784	444	55	7	4475	4908	312196659	312196223	1.060000e-108	405.0
44	TraesCS1B01G146900	chr2B	90.909	286	25	1	459	743	473356926	473357211	4.990000e-102	383.0
45	TraesCS1B01G146900	chr2B	74.275	552	84	32	6459	6991	75973342	75973854	7.020000e-41	180.0
46	TraesCS1B01G146900	chr2B	93.878	98	5	1	3578	3675	78868004	78868100	7.120000e-31	147.0
47	TraesCS1B01G146900	chr2B	97.647	85	2	0	8722	8806	410895251	410895167	7.120000e-31	147.0
48	TraesCS1B01G146900	chr2B	82.353	170	15	6	4985	5154	312195679	312195525	5.550000e-27	134.0
49	TraesCS1B01G146900	chr2B	90.110	91	7	2	3387	3476	621778914	621778825	5.590000e-22	117.0
50	TraesCS1B01G146900	chr2B	85.185	81	8	3	107	184	63837436	63837357	7.330000e-11	80.5
51	TraesCS1B01G146900	chr2B	76.552	145	30	4	186	326	696075324	696075468	9.480000e-10	76.8
52	TraesCS1B01G146900	chr3D	85.434	714	73	16	4456	5154	260989808	260989111	0.000000e+00	713.0
53	TraesCS1B01G146900	chr3A	85.077	717	79	14	4456	5154	102114777	102114071	0.000000e+00	706.0
54	TraesCS1B01G146900	chr3A	85.294	442	47	7	4456	4891	290435202	290435631	2.920000e-119	440.0
55	TraesCS1B01G146900	chr3A	92.248	129	7	3	2041	2169	46169226	46169101	7.020000e-41	180.0
56	TraesCS1B01G146900	chr3A	93.878	98	4	2	3579	3675	488042637	488042541	7.120000e-31	147.0
57	TraesCS1B01G146900	chr3A	93.000	100	5	2	3581	3678	451611373	451611472	2.560000e-30	145.0
58	TraesCS1B01G146900	chr2A	85.797	690	70	13	5444	6123	51036926	51037597	0.000000e+00	706.0
59	TraesCS1B01G146900	chr2A	86.782	174	22	1	5707	5880	51035156	51035328	9.020000e-45	193.0
60	TraesCS1B01G146900	chr2A	95.699	93	2	2	3578	3668	98882823	98882731	1.980000e-31	148.0
61	TraesCS1B01G146900	chr2A	89.189	111	8	4	3571	3679	715989391	715989499	1.540000e-27	135.0
62	TraesCS1B01G146900	chr5A	92.045	440	26	7	3666	4102	31439232	31438799	2.100000e-170	610.0
63	TraesCS1B01G146900	chr5A	90.580	138	9	4	2034	2170	7007462	7007328	7.020000e-41	180.0
64	TraesCS1B01G146900	chr5A	77.682	233	29	18	188	412	470923502	470923719	4.320000e-23	121.0
65	TraesCS1B01G146900	chr3B	90.704	355	30	2	3750	4102	809854898	809854545	3.720000e-128	470.0
66	TraesCS1B01G146900	chr3B	91.304	345	23	5	3666	4008	810116566	810116905	1.730000e-126	464.0
67	TraesCS1B01G146900	chr3B	90.654	107	6	3	3565	3669	228607032	228606928	1.190000e-28	139.0
68	TraesCS1B01G146900	chr3B	91.919	99	6	2	4005	4102	810117007	810117104	4.290000e-28	137.0
69	TraesCS1B01G146900	chr6A	96.016	251	10	0	7022	7272	518118177	518118427	8.230000e-110	409.0
70	TraesCS1B01G146900	chr4D	91.638	287	20	3	459	743	11580253	11579969	2.300000e-105	394.0
71	TraesCS1B01G146900	chr4B	90.941	287	24	2	458	743	370884808	370884523	1.390000e-102	385.0
72	TraesCS1B01G146900	chr4B	91.071	280	23	2	465	743	323790098	323789820	2.320000e-100	377.0
73	TraesCS1B01G146900	chr4B	97.619	84	2	0	8723	8806	51525910	51525993	2.560000e-30	145.0
74	TraesCS1B01G146900	chr4B	98.765	81	1	0	8726	8806	281599009	281598929	2.560000e-30	145.0
75	TraesCS1B01G146900	chr4B	98.765	81	1	0	8726	8806	616784565	616784485	2.560000e-30	145.0
76	TraesCS1B01G146900	chr4B	97.619	84	2	0	8723	8806	626046004	626046087	2.560000e-30	145.0
77	TraesCS1B01G146900	chr4B	91.860	86	3	1	3386	3471	453766782	453766701	5.590000e-22	117.0
78	TraesCS1B01G146900	chr7A	91.071	280	24	1	465	743	580501794	580502073	2.320000e-100	377.0
79	TraesCS1B01G146900	chr7A	94.309	123	5	2	2056	2178	735739915	735739795	4.200000e-43	187.0
80	TraesCS1B01G146900	chr5D	98.182	110	2	0	2060	2169	29168313	29168204	9.020000e-45	193.0
81	TraesCS1B01G146900	chr5D	95.082	122	5	1	2053	2174	134808265	134808385	3.240000e-44	191.0
82	TraesCS1B01G146900	chr5D	96.667	90	2	1	3580	3668	491871675	491871586	1.980000e-31	148.0
83	TraesCS1B01G146900	chr7B	98.165	109	2	0	2062	2170	667088759	667088651	3.240000e-44	191.0
84	TraesCS1B01G146900	chr7D	95.876	97	3	1	3574	3669	514661134	514661038	1.180000e-33	156.0
85	TraesCS1B01G146900	chr5B	98.765	81	1	0	8726	8806	542966953	542966873	2.560000e-30	145.0
86	TraesCS1B01G146900	chr5B	89.655	87	9	0	3380	3466	384599435	384599349	2.600000e-20	111.0
87	TraesCS1B01G146900	chr6B	94.186	86	5	0	3388	3473	624787935	624787850	1.990000e-26	132.0
88	TraesCS1B01G146900	chr6B	91.250	80	7	0	3387	3466	227650138	227650217	9.350000e-20	110.0
89	TraesCS1B01G146900	chr6D	100.000	40	0	0	103	142	354838219	354838180	3.410000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G146900	chr1B	207264824	207273629	8805	False	5064.333333	7585	100.000000	1	8806	3	chr1B.!!$F7	8805
1	TraesCS1B01G146900	chr1B	464113858	464114573	715	True	580.000000	580	81.806000	4456	5154	1	chr1B.!!$R3	698
2	TraesCS1B01G146900	chr1D	130606232	130615866	9634	False	1863.142857	6466	93.509000	1	8469	7	chr1D.!!$F2	8468
3	TraesCS1B01G146900	chr1D	225049066	225049960	894	True	389.500000	392	91.191000	465	752	2	chr1D.!!$R2	287
4	TraesCS1B01G146900	chr1A	189957811	189966547	8736	False	1135.009091	4065	95.574091	1	8337	11	chr1A.!!$F1	8336
5	TraesCS1B01G146900	chr2D	48030211	48032689	2478	True	772.500000	1144	82.483500	5439	7242	2	chr2D.!!$R1	1803
6	TraesCS1B01G146900	chr2D	275945399	275946571	1172	False	284.000000	407	83.662000	4457	5154	2	chr2D.!!$F3	697
7	TraesCS1B01G146900	chr2B	75972297	75973854	1557	False	474.500000	769	78.238500	5444	6991	2	chr2B.!!$F4	1547
8	TraesCS1B01G146900	chr2B	312195525	312196659	1134	True	269.500000	405	83.068500	4475	5154	2	chr2B.!!$R4	679
9	TraesCS1B01G146900	chr3D	260989111	260989808	697	True	713.000000	713	85.434000	4456	5154	1	chr3D.!!$R1	698
10	TraesCS1B01G146900	chr3A	102114071	102114777	706	True	706.000000	706	85.077000	4456	5154	1	chr3A.!!$R2	698
11	TraesCS1B01G146900	chr2A	51035156	51037597	2441	False	449.500000	706	86.289500	5444	6123	2	chr2A.!!$F2	679
12	TraesCS1B01G146900	chr3B	810116566	810117104	538	False	300.500000	464	91.611500	3666	4102	2	chr3B.!!$F1	436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
779	1630	0.178767	TGATCCGATTCCACTGCAGG	59.821	55.000	19.93	6.95	0.00	4.85	F
780	1631	0.533755	GATCCGATTCCACTGCAGGG	60.534	60.000	19.93	15.23	0.00	4.45	F
869	1721	1.139095	GAGCACGACCCTAACTCGG	59.861	63.158	0.00	0.00	35.37	4.63	F
2156	3238	1.274167	ACCTGCGACAAGTAATTCGGA	59.726	47.619	0.00	0.00	35.73	4.55	F
2732	3815	0.391661	TTGGGATGTCTCAGAAGCGC	60.392	55.000	0.00	0.00	0.00	5.92	F
3550	4633	0.835941	TGTGCCATGCAACCCTTTTT	59.164	45.000	0.00	0.00	41.47	1.94	F
3677	4760	1.678627	CGGAGGGAGTACATGACTGAG	59.321	57.143	0.00	0.00	39.06	3.35	F
5068	6781	0.841961	TGAGGCTGCCATGAGCTTAT	59.158	50.000	22.65	0.00	44.23	1.73	F
5799	8174	2.551644	GGTTTGGGCGAACCTACAG	58.448	57.895	12.56	0.00	44.55	2.74	F
6807	9312	0.538287	AAGTCTCCTGGCCAGCAAAC	60.538	55.000	28.39	21.78	0.00	2.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2166	3248	0.539986	TCCGCCACCCTGAGAAATAC	59.460	55.000	0.00	0.00	0.00	1.89	R
2318	3401	2.133281	TCTGGATGCCACTTTCCATG	57.867	50.000	0.00	0.00	41.09	3.66	R
2732	3815	2.580867	GCAGAGTCAGCGCTACGG	60.581	66.667	10.99	0.00	0.00	4.02	R
3656	4739	1.005569	TCAGTCATGTACTCCCTCCGT	59.994	52.381	0.00	0.00	35.76	4.69	R
4435	5625	1.519455	CTCGGGTAGCGCCTTTGAG	60.519	63.158	2.29	1.34	37.43	3.02	R
4898	6116	0.032952	GTCACACACCGAGCCTGTTA	59.967	55.000	0.00	0.00	0.00	2.41	R
5154	6875	1.529010	CAGCAGGCTGTTTGGGTCA	60.529	57.895	17.16	0.00	39.10	4.02	R
5977	8366	0.179234	TCACGTGCTGAACCTTCCAA	59.821	50.000	11.67	0.00	0.00	3.53	R
7173	9796	0.397941	CAGGAAACTCCTCCACAGCA	59.602	55.000	0.00	0.00	45.66	4.41	R
8730	11392	0.037326	ATATAGCCGCATCGTGGGTG	60.037	55.000	8.47	0.00	44.01	4.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Show entries

Search:

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	732	7.067737	GGGTATTTCGGTGGATGAAGAAATTAA	59.932	37.037	7.44	0.00	41.67	1.40
298	982	6.076981	AGTTGAAACTTGCCATCTAAACAG	57.923	37.500	0.00	0.00	35.21	3.16
379	1064	6.409524	AAATGTCAGAAGGAAATTGCTTCA	57.590	33.333	25.12	9.00	45.70	3.02
381	1066	7.707624	AATGTCAGAAGGAAATTGCTTCATA	57.292	32.000	25.12	12.32	45.70	2.15
385	1070	5.415701	TCAGAAGGAAATTGCTTCATACCAC	59.584	40.000	25.12	1.50	45.70	4.16
393	1078	3.878160	TGCTTCATACCACATCGTGTA	57.122	42.857	0.00	0.00	0.00	2.90
434	1119	8.457261	CAGATTTACGAGTAACCAGTAAGTAGT	58.543	37.037	0.00	0.00	32.78	2.73
463	1313	0.395311	CAGTCGGCTACTACAGGGGA	60.395	60.000	0.00	0.00	35.76	4.81
486	1336	4.551215	AGTGGATCCTCTAACATCCTCT	57.449	45.455	14.73	0.00	39.62	3.69
509	1359	2.419297	GGGATGTCAGGAAGCTACAGTG	60.419	54.545	0.00	0.00	0.00	3.66
516	1366	2.094894	CAGGAAGCTACAGTGAAATGCG	59.905	50.000	0.00	0.00	0.00	4.73
522	1372	2.662791	GCTACAGTGAAATGCGTGTGTG	60.663	50.000	0.00	0.00	0.00	3.82
525	1375	2.421775	ACAGTGAAATGCGTGTGTGAAA	59.578	40.909	0.00	0.00	0.00	2.69
526	1376	3.066621	ACAGTGAAATGCGTGTGTGAAAT	59.933	39.130	0.00	0.00	0.00	2.17
530	1380	4.146961	GTGAAATGCGTGTGTGAAATGAAG	59.853	41.667	0.00	0.00	0.00	3.02
557	1408	2.321719	TGTCAGGGTACTGTAGCAACA	58.678	47.619	17.71	14.56	45.14	3.33
559	1410	3.134985	TGTCAGGGTACTGTAGCAACAAA	59.865	43.478	17.71	0.00	45.14	2.83
728	1579	1.002087	ACGTGAAGAAGGGATGTCACC	59.998	52.381	0.00	0.00	37.66	4.02
739	1590	3.056322	AGGGATGTCACCGTTACTGTAAC	60.056	47.826	18.43	18.43	35.37	2.50
741	1592	4.562143	GGGATGTCACCGTTACTGTAACTT	60.562	45.833	23.76	11.24	36.54	2.66
742	1593	5.336690	GGGATGTCACCGTTACTGTAACTTA	60.337	44.000	23.76	7.74	36.54	2.24
744	1595	7.416664	GGGATGTCACCGTTACTGTAACTTATA	60.417	40.741	23.76	8.32	36.54	0.98
745	1596	8.139989	GGATGTCACCGTTACTGTAACTTATAT	58.860	37.037	23.76	12.77	36.54	0.86
746	1597	9.525409	GATGTCACCGTTACTGTAACTTATATT	57.475	33.333	23.76	7.52	36.54	1.28
748	1599	9.787532	TGTCACCGTTACTGTAACTTATATTAC	57.212	33.333	23.76	14.33	36.54	1.89

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Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	732	7.710044	TCACATGTTTCATTACAAAGCAAACAT	59.290	29.630	0.00	3.12	44.62	2.71
227	904	8.053653	GGCAATTTTAGTTGTAAAAACGTCAAG	58.946	33.333	0.00	0.00	40.65	3.02
228	905	7.544566	TGGCAATTTTAGTTGTAAAAACGTCAA	59.455	29.630	0.00	0.00	40.65	3.18
268	947	6.044682	AGATGGCAAGTTTCAACTTTTTGAG	58.955	36.000	2.01	0.00	46.52	3.02
269	948	5.976458	AGATGGCAAGTTTCAACTTTTTGA	58.024	33.333	2.01	0.00	46.52	2.69
298	982	7.260603	ACTTAGTTATGAAGCATGGCATTTTC	58.739	34.615	12.35	12.35	0.00	2.29
354	1039	6.925165	TGAAGCAATTTCCTTCTGACATTTTC	59.075	34.615	13.76	0.00	39.47	2.29
379	1064	3.887621	AAGTGCTACACGATGTGGTAT	57.112	42.857	1.64	0.00	39.64	2.73
381	1066	3.194755	TGATAAGTGCTACACGATGTGGT	59.805	43.478	1.64	0.00	39.64	4.16
385	1070	4.371786	ACCATGATAAGTGCTACACGATG	58.628	43.478	0.00	0.00	39.64	3.84
393	1078	5.755375	CGTAAATCTGACCATGATAAGTGCT	59.245	40.000	0.00	0.00	0.00	4.40
456	1306	1.203492	AGAGGATCCACTTTCCCCTGT	60.203	52.381	15.82	0.00	33.66	4.00
463	1313	5.284582	AGAGGATGTTAGAGGATCCACTTT	58.715	41.667	17.39	0.00	40.72	2.66
486	1336	3.300388	CTGTAGCTTCCTGACATCCCTA	58.700	50.000	0.00	0.00	0.00	3.53
497	1347	2.076863	ACGCATTTCACTGTAGCTTCC	58.923	47.619	0.00	0.00	0.00	3.46
509	1359	4.536065	TCTTCATTTCACACACGCATTTC	58.464	39.130	0.00	0.00	0.00	2.17
516	1366	4.520492	ACATCCCTTCTTCATTTCACACAC	59.480	41.667	0.00	0.00	0.00	3.82
522	1372	3.950395	CCCTGACATCCCTTCTTCATTTC	59.050	47.826	0.00	0.00	0.00	2.17
525	1375	2.566746	ACCCTGACATCCCTTCTTCAT	58.433	47.619	0.00	0.00	0.00	2.57
526	1376	2.044793	ACCCTGACATCCCTTCTTCA	57.955	50.000	0.00	0.00	0.00	3.02
530	1380	2.188817	ACAGTACCCTGACATCCCTTC	58.811	52.381	0.00	0.00	41.50	3.46
557	1408	3.005261	TGTTGCAGTAAATCCGCACATTT	59.995	39.130	0.00	0.00	34.87	2.32
559	1410	2.158559	TGTTGCAGTAAATCCGCACAT	58.841	42.857	0.00	0.00	34.87	3.21
694	1545	6.037172	CCTTCTTCACGTTCATATGGTTAAGG	59.963	42.308	2.13	0.00	0.00	2.69
707	1558	2.550208	GGTGACATCCCTTCTTCACGTT	60.550	50.000	0.00	0.00	39.46	3.99

Showing 1 to 25 of 285 entries

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Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.