Multiple sequence alignment - TraesCS1B01G146900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G146900 chr1B 100.000 4107 0 0 1 4107 207264824 207268930 0.000000e+00 7585.0
1 TraesCS1B01G146900 chr1B 100.000 4034 0 0 4436 8469 207269259 207273292 0.000000e+00 7450.0
2 TraesCS1B01G146900 chr1B 81.806 720 106 15 4456 5154 464114573 464113858 1.650000e-161 580.0
3 TraesCS1B01G146900 chr1B 92.000 200 14 2 8120 8318 207312366 207312564 6.730000e-71 279.0
4 TraesCS1B01G146900 chr1B 91.500 200 15 2 8120 8318 207286739 207286937 3.130000e-69 274.0
5 TraesCS1B01G146900 chr1B 97.368 114 3 0 2060 2173 687253940 687254053 2.510000e-45 195.0
6 TraesCS1B01G146900 chr1B 100.000 85 0 0 8722 8806 207273545 207273629 3.290000e-34 158.0
7 TraesCS1B01G146900 chr1B 98.765 81 1 0 8726 8806 207281736 207281816 2.560000e-30 145.0
8 TraesCS1B01G146900 chr1B 98.765 81 1 0 8726 8806 207305734 207305814 2.560000e-30 145.0
9 TraesCS1B01G146900 chr1B 98.765 81 1 0 8726 8806 269932396 269932316 2.560000e-30 145.0
10 TraesCS1B01G146900 chr1B 89.189 111 8 4 3568 3675 223360164 223360273 1.540000e-27 135.0
11 TraesCS1B01G146900 chr1B 94.118 85 5 0 3387 3471 397429464 397429380 7.170000e-26 130.0
12 TraesCS1B01G146900 chr1D 95.523 4088 107 20 4436 8469 130610934 130614999 0.000000e+00 6466.0
13 TraesCS1B01G146900 chr1D 97.890 1422 27 3 2168 3588 130608812 130610231 0.000000e+00 2457.0
14 TraesCS1B01G146900 chr1D 96.074 1299 32 11 773 2064 130607527 130608813 0.000000e+00 2098.0
15 TraesCS1B01G146900 chr1D 97.511 442 9 1 3667 4106 130610229 130610670 0.000000e+00 754.0
16 TraesCS1B01G146900 chr1D 89.120 432 37 8 1 424 130606903 130607332 6.050000e-146 529.0
17 TraesCS1B01G146900 chr1D 85.945 434 50 6 1 424 130606232 130606664 3.750000e-123 453.0
18 TraesCS1B01G146900 chr1D 91.379 290 20 5 465 752 225049352 225049066 8.290000e-105 392.0
19 TraesCS1B01G146900 chr1D 91.003 289 23 3 465 752 225049960 225049674 3.860000e-103 387.0
20 TraesCS1B01G146900 chr1D 91.166 283 23 2 461 742 443782613 443782332 4.990000e-102 383.0
21 TraesCS1B01G146900 chr1D 92.500 200 14 1 8120 8318 130615667 130615866 1.450000e-72 285.0
22 TraesCS1B01G146900 chr1D 97.297 111 3 0 2059 2169 227655307 227655417 1.170000e-43 189.0
23 TraesCS1B01G146900 chr1A 96.419 2485 56 5 4444 6896 189961661 189964144 0.000000e+00 4065.0
24 TraesCS1B01G146900 chr1A 97.679 1422 30 3 2168 3588 189959730 189961149 0.000000e+00 2440.0
25 TraesCS1B01G146900 chr1A 95.376 930 27 6 773 1694 189958274 189959195 0.000000e+00 1465.0
26 TraesCS1B01G146900 chr1A 96.042 758 24 6 7585 8337 189964872 189965628 0.000000e+00 1229.0
27 TraesCS1B01G146900 chr1A 96.372 634 15 3 6903 7530 189964247 189964878 0.000000e+00 1037.0
28 TraesCS1B01G146900 chr1A 96.833 442 8 2 3667 4106 189961147 189961584 0.000000e+00 734.0
29 TraesCS1B01G146900 chr1A 95.989 374 10 5 1696 2064 189959358 189959731 3.520000e-168 603.0
30 TraesCS1B01G146900 chr1A 86.105 475 50 9 1 462 189957811 189958282 1.710000e-136 497.0
31 TraesCS1B01G146900 chr1A 93.000 200 13 1 8120 8318 189966348 189966547 3.110000e-74 291.0
32 TraesCS1B01G146900 chr1A 93.496 123 7 1 2048 2169 321291459 321291337 1.950000e-41 182.0
33 TraesCS1B01G146900 chr1A 94.118 85 5 0 3387 3471 368812597 368812513 7.170000e-26 130.0
34 TraesCS1B01G146900 chr1A 97.500 40 1 0 6558 6597 189964163 189964202 1.590000e-07 69.4
35 TraesCS1B01G146900 chr1A 100.000 29 0 0 7311 7339 189964199 189964227 4.000000e-03 54.7
36 TraesCS1B01G146900 chr2D 79.070 1892 227 91 5447 7242 48032029 48030211 0.000000e+00 1144.0
37 TraesCS1B01G146900 chr2D 82.618 489 57 9 4457 4932 275945399 275945872 2.960000e-109 407.0
38 TraesCS1B01G146900 chr2D 85.897 390 39 7 5439 5820 48032689 48032308 1.380000e-107 401.0
39 TraesCS1B01G146900 chr2D 92.143 280 21 1 465 743 586967377 586967656 2.300000e-105 394.0
40 TraesCS1B01G146900 chr2D 84.706 170 16 5 4985 5154 275946412 275946571 2.540000e-35 161.0
41 TraesCS1B01G146900 chr2D 82.796 93 11 4 95 184 37044435 37044525 2.640000e-10 78.7
42 TraesCS1B01G146900 chr2B 82.202 972 100 36 5444 6383 75972297 75973227 0.000000e+00 769.0
43 TraesCS1B01G146900 chr2B 83.784 444 55 7 4475 4908 312196659 312196223 1.060000e-108 405.0
44 TraesCS1B01G146900 chr2B 90.909 286 25 1 459 743 473356926 473357211 4.990000e-102 383.0
45 TraesCS1B01G146900 chr2B 74.275 552 84 32 6459 6991 75973342 75973854 7.020000e-41 180.0
46 TraesCS1B01G146900 chr2B 93.878 98 5 1 3578 3675 78868004 78868100 7.120000e-31 147.0
47 TraesCS1B01G146900 chr2B 97.647 85 2 0 8722 8806 410895251 410895167 7.120000e-31 147.0
48 TraesCS1B01G146900 chr2B 82.353 170 15 6 4985 5154 312195679 312195525 5.550000e-27 134.0
49 TraesCS1B01G146900 chr2B 90.110 91 7 2 3387 3476 621778914 621778825 5.590000e-22 117.0
50 TraesCS1B01G146900 chr2B 85.185 81 8 3 107 184 63837436 63837357 7.330000e-11 80.5
51 TraesCS1B01G146900 chr2B 76.552 145 30 4 186 326 696075324 696075468 9.480000e-10 76.8
52 TraesCS1B01G146900 chr3D 85.434 714 73 16 4456 5154 260989808 260989111 0.000000e+00 713.0
53 TraesCS1B01G146900 chr3A 85.077 717 79 14 4456 5154 102114777 102114071 0.000000e+00 706.0
54 TraesCS1B01G146900 chr3A 85.294 442 47 7 4456 4891 290435202 290435631 2.920000e-119 440.0
55 TraesCS1B01G146900 chr3A 92.248 129 7 3 2041 2169 46169226 46169101 7.020000e-41 180.0
56 TraesCS1B01G146900 chr3A 93.878 98 4 2 3579 3675 488042637 488042541 7.120000e-31 147.0
57 TraesCS1B01G146900 chr3A 93.000 100 5 2 3581 3678 451611373 451611472 2.560000e-30 145.0
58 TraesCS1B01G146900 chr2A 85.797 690 70 13 5444 6123 51036926 51037597 0.000000e+00 706.0
59 TraesCS1B01G146900 chr2A 86.782 174 22 1 5707 5880 51035156 51035328 9.020000e-45 193.0
60 TraesCS1B01G146900 chr2A 95.699 93 2 2 3578 3668 98882823 98882731 1.980000e-31 148.0
61 TraesCS1B01G146900 chr2A 89.189 111 8 4 3571 3679 715989391 715989499 1.540000e-27 135.0
62 TraesCS1B01G146900 chr5A 92.045 440 26 7 3666 4102 31439232 31438799 2.100000e-170 610.0
63 TraesCS1B01G146900 chr5A 90.580 138 9 4 2034 2170 7007462 7007328 7.020000e-41 180.0
64 TraesCS1B01G146900 chr5A 77.682 233 29 18 188 412 470923502 470923719 4.320000e-23 121.0
65 TraesCS1B01G146900 chr3B 90.704 355 30 2 3750 4102 809854898 809854545 3.720000e-128 470.0
66 TraesCS1B01G146900 chr3B 91.304 345 23 5 3666 4008 810116566 810116905 1.730000e-126 464.0
67 TraesCS1B01G146900 chr3B 90.654 107 6 3 3565 3669 228607032 228606928 1.190000e-28 139.0
68 TraesCS1B01G146900 chr3B 91.919 99 6 2 4005 4102 810117007 810117104 4.290000e-28 137.0
69 TraesCS1B01G146900 chr6A 96.016 251 10 0 7022 7272 518118177 518118427 8.230000e-110 409.0
70 TraesCS1B01G146900 chr4D 91.638 287 20 3 459 743 11580253 11579969 2.300000e-105 394.0
71 TraesCS1B01G146900 chr4B 90.941 287 24 2 458 743 370884808 370884523 1.390000e-102 385.0
72 TraesCS1B01G146900 chr4B 91.071 280 23 2 465 743 323790098 323789820 2.320000e-100 377.0
73 TraesCS1B01G146900 chr4B 97.619 84 2 0 8723 8806 51525910 51525993 2.560000e-30 145.0
74 TraesCS1B01G146900 chr4B 98.765 81 1 0 8726 8806 281599009 281598929 2.560000e-30 145.0
75 TraesCS1B01G146900 chr4B 98.765 81 1 0 8726 8806 616784565 616784485 2.560000e-30 145.0
76 TraesCS1B01G146900 chr4B 97.619 84 2 0 8723 8806 626046004 626046087 2.560000e-30 145.0
77 TraesCS1B01G146900 chr4B 91.860 86 3 1 3386 3471 453766782 453766701 5.590000e-22 117.0
78 TraesCS1B01G146900 chr7A 91.071 280 24 1 465 743 580501794 580502073 2.320000e-100 377.0
79 TraesCS1B01G146900 chr7A 94.309 123 5 2 2056 2178 735739915 735739795 4.200000e-43 187.0
80 TraesCS1B01G146900 chr5D 98.182 110 2 0 2060 2169 29168313 29168204 9.020000e-45 193.0
81 TraesCS1B01G146900 chr5D 95.082 122 5 1 2053 2174 134808265 134808385 3.240000e-44 191.0
82 TraesCS1B01G146900 chr5D 96.667 90 2 1 3580 3668 491871675 491871586 1.980000e-31 148.0
83 TraesCS1B01G146900 chr7B 98.165 109 2 0 2062 2170 667088759 667088651 3.240000e-44 191.0
84 TraesCS1B01G146900 chr7D 95.876 97 3 1 3574 3669 514661134 514661038 1.180000e-33 156.0
85 TraesCS1B01G146900 chr5B 98.765 81 1 0 8726 8806 542966953 542966873 2.560000e-30 145.0
86 TraesCS1B01G146900 chr5B 89.655 87 9 0 3380 3466 384599435 384599349 2.600000e-20 111.0
87 TraesCS1B01G146900 chr6B 94.186 86 5 0 3388 3473 624787935 624787850 1.990000e-26 132.0
88 TraesCS1B01G146900 chr6B 91.250 80 7 0 3387 3466 227650138 227650217 9.350000e-20 110.0
89 TraesCS1B01G146900 chr6D 100.000 40 0 0 103 142 354838219 354838180 3.410000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G146900 chr1B 207264824 207273629 8805 False 5064.333333 7585 100.000000 1 8806 3 chr1B.!!$F7 8805
1 TraesCS1B01G146900 chr1B 464113858 464114573 715 True 580.000000 580 81.806000 4456 5154 1 chr1B.!!$R3 698
2 TraesCS1B01G146900 chr1D 130606232 130615866 9634 False 1863.142857 6466 93.509000 1 8469 7 chr1D.!!$F2 8468
3 TraesCS1B01G146900 chr1D 225049066 225049960 894 True 389.500000 392 91.191000 465 752 2 chr1D.!!$R2 287
4 TraesCS1B01G146900 chr1A 189957811 189966547 8736 False 1135.009091 4065 95.574091 1 8337 11 chr1A.!!$F1 8336
5 TraesCS1B01G146900 chr2D 48030211 48032689 2478 True 772.500000 1144 82.483500 5439 7242 2 chr2D.!!$R1 1803
6 TraesCS1B01G146900 chr2D 275945399 275946571 1172 False 284.000000 407 83.662000 4457 5154 2 chr2D.!!$F3 697
7 TraesCS1B01G146900 chr2B 75972297 75973854 1557 False 474.500000 769 78.238500 5444 6991 2 chr2B.!!$F4 1547
8 TraesCS1B01G146900 chr2B 312195525 312196659 1134 True 269.500000 405 83.068500 4475 5154 2 chr2B.!!$R4 679
9 TraesCS1B01G146900 chr3D 260989111 260989808 697 True 713.000000 713 85.434000 4456 5154 1 chr3D.!!$R1 698
10 TraesCS1B01G146900 chr3A 102114071 102114777 706 True 706.000000 706 85.077000 4456 5154 1 chr3A.!!$R2 698
11 TraesCS1B01G146900 chr2A 51035156 51037597 2441 False 449.500000 706 86.289500 5444 6123 2 chr2A.!!$F2 679
12 TraesCS1B01G146900 chr3B 810116566 810117104 538 False 300.500000 464 91.611500 3666 4102 2 chr3B.!!$F1 436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1630 0.178767 TGATCCGATTCCACTGCAGG 59.821 55.000 19.93 6.95 0.00 4.85 F
780 1631 0.533755 GATCCGATTCCACTGCAGGG 60.534 60.000 19.93 15.23 0.00 4.45 F
869 1721 1.139095 GAGCACGACCCTAACTCGG 59.861 63.158 0.00 0.00 35.37 4.63 F
2156 3238 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55 F
2732 3815 0.391661 TTGGGATGTCTCAGAAGCGC 60.392 55.000 0.00 0.00 0.00 5.92 F
3550 4633 0.835941 TGTGCCATGCAACCCTTTTT 59.164 45.000 0.00 0.00 41.47 1.94 F
3677 4760 1.678627 CGGAGGGAGTACATGACTGAG 59.321 57.143 0.00 0.00 39.06 3.35 F
5068 6781 0.841961 TGAGGCTGCCATGAGCTTAT 59.158 50.000 22.65 0.00 44.23 1.73 F
5799 8174 2.551644 GGTTTGGGCGAACCTACAG 58.448 57.895 12.56 0.00 44.55 2.74 F
6807 9312 0.538287 AAGTCTCCTGGCCAGCAAAC 60.538 55.000 28.39 21.78 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 3248 0.539986 TCCGCCACCCTGAGAAATAC 59.460 55.000 0.00 0.00 0.00 1.89 R
2318 3401 2.133281 TCTGGATGCCACTTTCCATG 57.867 50.000 0.00 0.00 41.09 3.66 R
2732 3815 2.580867 GCAGAGTCAGCGCTACGG 60.581 66.667 10.99 0.00 0.00 4.02 R
3656 4739 1.005569 TCAGTCATGTACTCCCTCCGT 59.994 52.381 0.00 0.00 35.76 4.69 R
4435 5625 1.519455 CTCGGGTAGCGCCTTTGAG 60.519 63.158 2.29 1.34 37.43 3.02 R
4898 6116 0.032952 GTCACACACCGAGCCTGTTA 59.967 55.000 0.00 0.00 0.00 2.41 R
5154 6875 1.529010 CAGCAGGCTGTTTGGGTCA 60.529 57.895 17.16 0.00 39.10 4.02 R
5977 8366 0.179234 TCACGTGCTGAACCTTCCAA 59.821 50.000 11.67 0.00 0.00 3.53 R
7173 9796 0.397941 CAGGAAACTCCTCCACAGCA 59.602 55.000 0.00 0.00 45.66 4.41 R
8730 11392 0.037326 ATATAGCCGCATCGTGGGTG 60.037 55.000 8.47 0.00 44.01 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 732 7.067737 GGGTATTTCGGTGGATGAAGAAATTAA 59.932 37.037 7.44 0.00 41.67 1.40
298 982 6.076981 AGTTGAAACTTGCCATCTAAACAG 57.923 37.500 0.00 0.00 35.21 3.16
379 1064 6.409524 AAATGTCAGAAGGAAATTGCTTCA 57.590 33.333 25.12 9.00 45.70 3.02
381 1066 7.707624 AATGTCAGAAGGAAATTGCTTCATA 57.292 32.000 25.12 12.32 45.70 2.15
385 1070 5.415701 TCAGAAGGAAATTGCTTCATACCAC 59.584 40.000 25.12 1.50 45.70 4.16
393 1078 3.878160 TGCTTCATACCACATCGTGTA 57.122 42.857 0.00 0.00 0.00 2.90
434 1119 8.457261 CAGATTTACGAGTAACCAGTAAGTAGT 58.543 37.037 0.00 0.00 32.78 2.73
463 1313 0.395311 CAGTCGGCTACTACAGGGGA 60.395 60.000 0.00 0.00 35.76 4.81
486 1336 4.551215 AGTGGATCCTCTAACATCCTCT 57.449 45.455 14.73 0.00 39.62 3.69
509 1359 2.419297 GGGATGTCAGGAAGCTACAGTG 60.419 54.545 0.00 0.00 0.00 3.66
516 1366 2.094894 CAGGAAGCTACAGTGAAATGCG 59.905 50.000 0.00 0.00 0.00 4.73
522 1372 2.662791 GCTACAGTGAAATGCGTGTGTG 60.663 50.000 0.00 0.00 0.00 3.82
525 1375 2.421775 ACAGTGAAATGCGTGTGTGAAA 59.578 40.909 0.00 0.00 0.00 2.69
526 1376 3.066621 ACAGTGAAATGCGTGTGTGAAAT 59.933 39.130 0.00 0.00 0.00 2.17
530 1380 4.146961 GTGAAATGCGTGTGTGAAATGAAG 59.853 41.667 0.00 0.00 0.00 3.02
557 1408 2.321719 TGTCAGGGTACTGTAGCAACA 58.678 47.619 17.71 14.56 45.14 3.33
559 1410 3.134985 TGTCAGGGTACTGTAGCAACAAA 59.865 43.478 17.71 0.00 45.14 2.83
728 1579 1.002087 ACGTGAAGAAGGGATGTCACC 59.998 52.381 0.00 0.00 37.66 4.02
739 1590 3.056322 AGGGATGTCACCGTTACTGTAAC 60.056 47.826 18.43 18.43 35.37 2.50
741 1592 4.562143 GGGATGTCACCGTTACTGTAACTT 60.562 45.833 23.76 11.24 36.54 2.66
742 1593 5.336690 GGGATGTCACCGTTACTGTAACTTA 60.337 44.000 23.76 7.74 36.54 2.24
744 1595 7.416664 GGGATGTCACCGTTACTGTAACTTATA 60.417 40.741 23.76 8.32 36.54 0.98
745 1596 8.139989 GGATGTCACCGTTACTGTAACTTATAT 58.860 37.037 23.76 12.77 36.54 0.86
746 1597 9.525409 GATGTCACCGTTACTGTAACTTATATT 57.475 33.333 23.76 7.52 36.54 1.28
748 1599 9.787532 TGTCACCGTTACTGTAACTTATATTAC 57.212 33.333 23.76 14.33 36.54 1.89
751 1602 9.793252 CACCGTTACTGTAACTTATATTACTGT 57.207 33.333 23.76 11.35 44.53 3.55
772 1623 8.190326 ACTGTAACTTATATGATCCGATTCCA 57.810 34.615 0.00 0.00 0.00 3.53
773 1624 8.088981 ACTGTAACTTATATGATCCGATTCCAC 58.911 37.037 0.00 0.00 0.00 4.02
775 1626 8.088365 TGTAACTTATATGATCCGATTCCACTG 58.912 37.037 0.00 0.00 0.00 3.66
777 1628 5.012046 ACTTATATGATCCGATTCCACTGCA 59.988 40.000 0.00 0.00 0.00 4.41
778 1629 2.251409 ATGATCCGATTCCACTGCAG 57.749 50.000 13.48 13.48 0.00 4.41
779 1630 0.178767 TGATCCGATTCCACTGCAGG 59.821 55.000 19.93 6.95 0.00 4.85
780 1631 0.533755 GATCCGATTCCACTGCAGGG 60.534 60.000 19.93 15.23 0.00 4.45
802 1653 5.049886 GGGTTGTCCTTCTAAAACACGTTAG 60.050 44.000 0.00 0.00 33.16 2.34
810 1661 4.952460 TCTAAAACACGTTAGTCAGGCTT 58.048 39.130 0.00 0.00 33.55 4.35
812 1663 5.922544 TCTAAAACACGTTAGTCAGGCTTAC 59.077 40.000 0.00 0.00 33.55 2.34
868 1720 1.226323 CGAGCACGACCCTAACTCG 60.226 63.158 0.00 0.00 43.46 4.18
869 1721 1.139095 GAGCACGACCCTAACTCGG 59.861 63.158 0.00 0.00 35.37 4.63
1021 1875 2.687566 TTTCCTCCTCCGCCTCCC 60.688 66.667 0.00 0.00 0.00 4.30
1022 1876 4.798682 TTCCTCCTCCGCCTCCCC 62.799 72.222 0.00 0.00 0.00 4.81
1094 1948 2.485814 GCAAGAAAAGGAGAATGCGAGT 59.514 45.455 0.00 0.00 0.00 4.18
1328 2244 4.942852 AGCGGTTTTGTTTGATTGATGAA 58.057 34.783 0.00 0.00 0.00 2.57
1394 2310 6.624917 CGTTTGCTCGTATAGATTTCAATGTG 59.375 38.462 0.00 0.00 0.00 3.21
1462 2378 2.332654 GCGATTTGTGGAGGGCGTT 61.333 57.895 0.00 0.00 0.00 4.84
1605 2521 3.096852 GGGGGAATTGGTCTTCGATTTT 58.903 45.455 0.00 0.00 29.85 1.82
1751 2828 3.636764 ACTTTTGAACAATCTGGGTGGAC 59.363 43.478 0.00 0.00 0.00 4.02
1814 2891 2.104111 TGTGAGTCTTGTTCCGATTGGT 59.896 45.455 0.00 0.00 36.30 3.67
1815 2892 3.322541 TGTGAGTCTTGTTCCGATTGGTA 59.677 43.478 0.00 0.00 36.30 3.25
1816 2893 3.678548 GTGAGTCTTGTTCCGATTGGTAC 59.321 47.826 1.77 1.77 36.17 3.34
1817 2894 3.576982 TGAGTCTTGTTCCGATTGGTACT 59.423 43.478 9.91 1.16 36.56 2.73
2067 3149 8.688151 ACTTGATCTTGTTATGACTACTACTCC 58.312 37.037 0.00 0.00 0.00 3.85
2068 3150 7.584122 TGATCTTGTTATGACTACTACTCCC 57.416 40.000 0.00 0.00 0.00 4.30
2069 3151 7.355101 TGATCTTGTTATGACTACTACTCCCT 58.645 38.462 0.00 0.00 0.00 4.20
2070 3152 7.502895 TGATCTTGTTATGACTACTACTCCCTC 59.497 40.741 0.00 0.00 0.00 4.30
2071 3153 6.127793 TCTTGTTATGACTACTACTCCCTCC 58.872 44.000 0.00 0.00 0.00 4.30
2072 3154 4.458397 TGTTATGACTACTACTCCCTCCG 58.542 47.826 0.00 0.00 0.00 4.63
2073 3155 4.080129 TGTTATGACTACTACTCCCTCCGT 60.080 45.833 0.00 0.00 0.00 4.69
2074 3156 3.666345 ATGACTACTACTCCCTCCGTT 57.334 47.619 0.00 0.00 0.00 4.44
2075 3157 2.996631 TGACTACTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
2076 3158 2.296792 GACTACTACTCCCTCCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
2077 3159 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
2078 3160 2.042162 ACTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
2079 3161 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2080 3162 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2081 3163 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2082 3164 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2083 3165 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2084 3166 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2085 3167 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2086 3168 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2087 3169 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2088 3170 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2091 3173 5.327616 TCCGTTCCAAATTACTCGTCATA 57.672 39.130 0.00 0.00 0.00 2.15
2101 3183 7.042456 CCAAATTACTCGTCATAGAAGTGGATG 60.042 40.741 0.00 0.00 0.00 3.51
2102 3184 6.716934 ATTACTCGTCATAGAAGTGGATGT 57.283 37.500 0.00 0.00 0.00 3.06
2103 3185 7.818997 ATTACTCGTCATAGAAGTGGATGTA 57.181 36.000 0.00 0.00 0.00 2.29
2104 3186 7.818997 TTACTCGTCATAGAAGTGGATGTAT 57.181 36.000 0.00 0.00 0.00 2.29
2105 3187 6.320494 ACTCGTCATAGAAGTGGATGTATC 57.680 41.667 0.00 0.00 0.00 2.24
2106 3188 6.065374 ACTCGTCATAGAAGTGGATGTATCT 58.935 40.000 0.00 0.00 0.00 1.98
2108 3190 7.389330 ACTCGTCATAGAAGTGGATGTATCTAG 59.611 40.741 0.00 0.00 0.00 2.43
2110 3192 7.937394 TCGTCATAGAAGTGGATGTATCTAGAA 59.063 37.037 0.00 0.00 0.00 2.10
2112 3194 9.073475 GTCATAGAAGTGGATGTATCTAGAACT 57.927 37.037 0.00 0.00 0.00 3.01
2141 3223 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2144 3226 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2145 3227 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2146 3228 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2147 3229 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2148 3230 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2149 3231 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
2150 3232 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2151 3233 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2152 3234 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2153 3235 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2154 3236 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
2155 3237 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
2156 3238 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
2158 3240 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
2261 3344 4.875544 TTCCATCGCTTACAGTTTATGC 57.124 40.909 0.00 0.00 0.00 3.14
2287 3370 7.306167 CGATTATCATGTGCCTAATTTGTTTGC 60.306 37.037 0.00 0.00 0.00 3.68
2410 3493 3.519913 AGGAGGTTTGTGGACTATTCTCC 59.480 47.826 0.00 0.00 39.67 3.71
2732 3815 0.391661 TTGGGATGTCTCAGAAGCGC 60.392 55.000 0.00 0.00 0.00 5.92
2759 3842 0.972134 CTGACTCTGCAGACCAGGAA 59.028 55.000 23.86 1.92 42.05 3.36
2981 4064 1.829222 GATGAAGTTGAGGTACCCCGA 59.171 52.381 8.74 0.00 35.12 5.14
3550 4633 0.835941 TGTGCCATGCAACCCTTTTT 59.164 45.000 0.00 0.00 41.47 1.94
3607 4690 4.837093 ACCTCCGTTCCAAAATAGATGA 57.163 40.909 0.00 0.00 0.00 2.92
3608 4691 4.514401 ACCTCCGTTCCAAAATAGATGAC 58.486 43.478 0.00 0.00 0.00 3.06
3609 4692 4.225267 ACCTCCGTTCCAAAATAGATGACT 59.775 41.667 0.00 0.00 0.00 3.41
3610 4693 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3611 4694 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3612 4695 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3613 4696 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3614 4697 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3615 4698 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3616 4699 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3617 4700 8.076178 CGTTCCAAAATAGATGACTCAACTTTT 58.924 33.333 0.00 0.00 0.00 2.27
3618 4701 9.750125 GTTCCAAAATAGATGACTCAACTTTTT 57.250 29.630 0.00 0.00 0.00 1.94
3654 4737 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
3655 4738 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
3656 4739 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
3657 4740 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
3658 4741 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3659 4742 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3660 4743 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3661 4744 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3662 4745 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3663 4746 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3664 4747 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3677 4760 1.678627 CGGAGGGAGTACATGACTGAG 59.321 57.143 0.00 0.00 39.06 3.35
3695 4778 3.104512 TGAGACGTTGATTAGGGTCCAT 58.895 45.455 0.00 0.00 0.00 3.41
3760 4843 9.838339 GTGGAAGATCATTTCCTTTATTCTCTA 57.162 33.333 13.33 0.00 45.59 2.43
4639 5854 3.244422 TGCTCCGAAGTTCCACAAGTTAT 60.244 43.478 0.00 0.00 0.00 1.89
4653 5868 9.895138 TTCCACAAGTTATAATTCCCTAACTAC 57.105 33.333 7.87 0.00 37.23 2.73
4740 5955 2.422945 GGAGGACAAGGAAAAGGTGTGT 60.423 50.000 0.00 0.00 0.00 3.72
4742 5957 4.457466 GAGGACAAGGAAAAGGTGTGTAA 58.543 43.478 0.00 0.00 0.00 2.41
4898 6116 4.359706 GCGGAAATTGAACACTTGAAACT 58.640 39.130 0.00 0.00 0.00 2.66
5068 6781 0.841961 TGAGGCTGCCATGAGCTTAT 59.158 50.000 22.65 0.00 44.23 1.73
5082 6797 4.864633 TGAGCTTATCACTCTTATGAGCG 58.135 43.478 5.57 0.00 43.85 5.03
5154 6875 3.960102 TCTTCCAAAGCAACCAAGTCAAT 59.040 39.130 0.00 0.00 0.00 2.57
5219 6940 5.641209 GCTTTGACTGTGATGAGAAGTATGT 59.359 40.000 0.00 0.00 0.00 2.29
5799 8174 2.551644 GGTTTGGGCGAACCTACAG 58.448 57.895 12.56 0.00 44.55 2.74
5986 8375 8.477419 TCAGACAAGAATTAAATTGGAAGGTT 57.523 30.769 3.43 0.00 0.00 3.50
6134 8539 3.000825 CCAAACCGTTTTGCTTGCTTAAC 59.999 43.478 0.00 0.00 40.84 2.01
6237 8642 1.548357 TTGCAGCTCTGGAGGGAGAC 61.548 60.000 0.00 0.00 35.52 3.36
6314 8722 2.284263 TCTACGCAGCAGAAGATGTG 57.716 50.000 0.00 0.00 46.50 3.21
6405 8842 1.070758 GAGGACCTTGACAAGTCAGCA 59.929 52.381 14.03 0.00 41.13 4.41
6415 8852 2.362397 GACAAGTCAGCAGGATATCCGA 59.638 50.000 16.21 4.58 42.08 4.55
6739 9242 0.896940 CTGTGTGGCCAAGGCTTCAT 60.897 55.000 7.24 0.00 41.60 2.57
6807 9312 0.538287 AAGTCTCCTGGCCAGCAAAC 60.538 55.000 28.39 21.78 0.00 2.93
7025 9640 6.568081 GCGTACTAGATCCGACAAGAATATGT 60.568 42.308 0.00 0.00 35.90 2.29
7063 9678 4.160439 AGTTATTGATGCTGGACTTCTCGA 59.840 41.667 0.00 0.00 0.00 4.04
7173 9796 6.933514 ATGTTCCCAAAATCATTACAGGTT 57.066 33.333 0.00 0.00 0.00 3.50
7260 9897 3.903714 TGAGAGACAGGGTGAATGAAGAA 59.096 43.478 0.00 0.00 0.00 2.52
7263 9900 5.885465 AGAGACAGGGTGAATGAAGAAATT 58.115 37.500 0.00 0.00 0.00 1.82
7344 9987 5.129485 TGGGCTTGAAATGTTTGGTTTCTTA 59.871 36.000 0.00 0.00 36.71 2.10
7406 10050 9.810545 GTATAGCTTTTGTTTCTCTCAGAGTAT 57.189 33.333 0.36 0.00 0.00 2.12
7407 10051 8.940768 ATAGCTTTTGTTTCTCTCAGAGTATC 57.059 34.615 0.36 0.00 0.00 2.24
7429 10073 9.561069 GTATCCACTTCATTATCACAGGTTATT 57.439 33.333 0.00 0.00 0.00 1.40
7449 10093 8.853126 GGTTATTGTTACTAAGAAACCCTTTGT 58.147 33.333 0.00 0.00 42.11 2.83
7586 10230 4.578928 ACGGTTGATGGCACTAATAATTCC 59.421 41.667 0.00 0.00 0.00 3.01
7763 10407 1.510480 GCGGCAGGATGGATAACAGC 61.510 60.000 0.00 0.00 35.86 4.40
7855 10499 9.642343 TTAGTAACTCATCCTAGATTGCTTCTA 57.358 33.333 0.00 0.00 35.79 2.10
8028 10673 3.688126 GCCAGGATCATGGTAACCAATGA 60.688 47.826 26.18 0.00 42.75 2.57
8079 10724 6.639563 AGTTTATGTTCAAAACCTTGTTGCT 58.360 32.000 0.00 0.00 37.51 3.91
8087 10732 4.020662 TCAAAACCTTGTTGCTGGAAAGTT 60.021 37.500 0.00 0.00 33.94 2.66
8138 10784 9.941325 AATTTTTGATTGATTGGTGCATTACTA 57.059 25.926 0.00 0.00 0.00 1.82
8176 10822 8.930846 AGATGGATAACCCTTTTTCATCATAG 57.069 34.615 0.00 0.00 35.38 2.23
8181 10827 8.966868 GGATAACCCTTTTTCATCATAGAACAA 58.033 33.333 0.00 0.00 0.00 2.83
8203 10849 7.433680 ACAACATCATTAAGTTTCTTTGGTCC 58.566 34.615 0.00 0.00 0.00 4.46
8251 10898 4.519540 TTACTTCCTTGCCTTGATTTGC 57.480 40.909 0.00 0.00 0.00 3.68
8337 10987 8.027189 GGTACTATTCAAAAACTCCATTGGAAC 58.973 37.037 6.88 0.00 0.00 3.62
8338 10988 6.677913 ACTATTCAAAAACTCCATTGGAACG 58.322 36.000 6.88 0.00 0.00 3.95
8339 10989 4.993029 TTCAAAAACTCCATTGGAACGT 57.007 36.364 6.88 0.00 0.00 3.99
8340 10990 4.993029 TCAAAAACTCCATTGGAACGTT 57.007 36.364 6.88 0.00 0.00 3.99
8341 10991 4.927422 TCAAAAACTCCATTGGAACGTTC 58.073 39.130 20.14 20.14 0.00 3.95
8342 10992 4.642885 TCAAAAACTCCATTGGAACGTTCT 59.357 37.500 26.32 5.45 0.00 3.01
8343 10993 5.126384 TCAAAAACTCCATTGGAACGTTCTT 59.874 36.000 26.32 8.62 0.00 2.52
8344 10994 4.830826 AAACTCCATTGGAACGTTCTTC 57.169 40.909 26.32 12.41 0.00 2.87
8345 10995 2.779506 ACTCCATTGGAACGTTCTTCC 58.220 47.619 26.32 12.89 39.03 3.46
8346 10996 2.105821 ACTCCATTGGAACGTTCTTCCA 59.894 45.455 26.32 15.50 46.08 3.53
8352 11002 2.302260 TGGAACGTTCTTCCAAATGCA 58.698 42.857 26.32 10.65 44.90 3.96
8353 11003 2.690497 TGGAACGTTCTTCCAAATGCAA 59.310 40.909 26.32 0.00 44.90 4.08
8354 11004 3.131223 TGGAACGTTCTTCCAAATGCAAA 59.869 39.130 26.32 0.00 44.90 3.68
8360 11010 5.799936 ACGTTCTTCCAAATGCAAAATATCG 59.200 36.000 0.00 0.00 0.00 2.92
8368 11018 6.071108 TCCAAATGCAAAATATCGGAGGAAAA 60.071 34.615 0.00 0.00 0.00 2.29
8401 11051 6.127338 CCTGATACATCTCACTGGTTCAGTTA 60.127 42.308 0.00 0.00 42.59 2.24
8446 11108 9.317827 ACTCTATAAACTGTTCCAAGTAGGTTA 57.682 33.333 0.00 0.00 39.02 2.85
8459 11121 5.414765 CCAAGTAGGTTAATTGGTTGGAGTC 59.585 44.000 7.05 0.00 45.93 3.36
8741 11403 3.253955 GTGTCACACCCACGATGC 58.746 61.111 0.00 0.00 0.00 3.91
8743 11405 3.118454 GTCACACCCACGATGCGG 61.118 66.667 0.00 0.00 0.00 5.69
8746 11408 3.387091 ACACCCACGATGCGGCTA 61.387 61.111 0.00 0.00 0.00 3.93
8747 11409 2.108976 CACCCACGATGCGGCTAT 59.891 61.111 0.00 0.00 0.00 2.97
8748 11410 1.365999 CACCCACGATGCGGCTATA 59.634 57.895 0.00 0.00 0.00 1.31
8749 11411 0.037326 CACCCACGATGCGGCTATAT 60.037 55.000 0.00 0.00 0.00 0.86
8751 11413 0.532573 CCCACGATGCGGCTATATCT 59.467 55.000 0.00 0.00 0.00 1.98
8755 11417 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
8757 11419 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
8758 11420 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
8759 11421 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
8762 11424 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
8763 11425 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
8764 11426 2.292569 GCTATATCTCCCACGTGTCGAA 59.707 50.000 15.65 0.00 0.00 3.71
8765 11427 3.609644 GCTATATCTCCCACGTGTCGAAG 60.610 52.174 15.65 6.13 0.00 3.79
8766 11428 0.454600 TATCTCCCACGTGTCGAAGC 59.545 55.000 15.65 0.00 0.00 3.86
8767 11429 1.532604 ATCTCCCACGTGTCGAAGCA 61.533 55.000 15.65 0.00 0.00 3.91
8778 11440 3.786809 TCGAAGCACGACTTACAGG 57.213 52.632 2.09 0.00 46.45 4.00
8779 11441 0.388134 TCGAAGCACGACTTACAGGC 60.388 55.000 2.09 0.00 46.45 4.85
8780 11442 0.666274 CGAAGCACGACTTACAGGCA 60.666 55.000 0.00 0.00 45.77 4.75
8781 11443 1.726853 GAAGCACGACTTACAGGCAT 58.273 50.000 0.00 0.00 39.29 4.40
8782 11444 2.734175 CGAAGCACGACTTACAGGCATA 60.734 50.000 0.00 0.00 45.77 3.14
8783 11445 3.259064 GAAGCACGACTTACAGGCATAA 58.741 45.455 0.00 0.00 39.29 1.90
8785 11447 1.664151 GCACGACTTACAGGCATAACC 59.336 52.381 0.00 0.00 39.61 2.85
8787 11449 0.928229 CGACTTACAGGCATAACCGC 59.072 55.000 0.00 0.00 46.52 5.68
8788 11450 1.737696 CGACTTACAGGCATAACCGCA 60.738 52.381 0.00 0.00 46.52 5.69
8789 11451 2.561569 GACTTACAGGCATAACCGCAT 58.438 47.619 0.00 0.00 46.52 4.73
8802 11464 1.081509 CCGCATGGTGGTTTTGTCG 60.082 57.895 0.00 0.00 0.00 4.35
8804 11466 1.361993 GCATGGTGGTTTTGTCGCA 59.638 52.632 0.00 0.00 0.00 5.10
8805 11467 0.249238 GCATGGTGGTTTTGTCGCAA 60.249 50.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 732 7.710044 TCACATGTTTCATTACAAAGCAAACAT 59.290 29.630 0.00 3.12 44.62 2.71
227 904 8.053653 GGCAATTTTAGTTGTAAAAACGTCAAG 58.946 33.333 0.00 0.00 40.65 3.02
228 905 7.544566 TGGCAATTTTAGTTGTAAAAACGTCAA 59.455 29.630 0.00 0.00 40.65 3.18
268 947 6.044682 AGATGGCAAGTTTCAACTTTTTGAG 58.955 36.000 2.01 0.00 46.52 3.02
269 948 5.976458 AGATGGCAAGTTTCAACTTTTTGA 58.024 33.333 2.01 0.00 46.52 2.69
298 982 7.260603 ACTTAGTTATGAAGCATGGCATTTTC 58.739 34.615 12.35 12.35 0.00 2.29
354 1039 6.925165 TGAAGCAATTTCCTTCTGACATTTTC 59.075 34.615 13.76 0.00 39.47 2.29
379 1064 3.887621 AAGTGCTACACGATGTGGTAT 57.112 42.857 1.64 0.00 39.64 2.73
381 1066 3.194755 TGATAAGTGCTACACGATGTGGT 59.805 43.478 1.64 0.00 39.64 4.16
385 1070 4.371786 ACCATGATAAGTGCTACACGATG 58.628 43.478 0.00 0.00 39.64 3.84
393 1078 5.755375 CGTAAATCTGACCATGATAAGTGCT 59.245 40.000 0.00 0.00 0.00 4.40
456 1306 1.203492 AGAGGATCCACTTTCCCCTGT 60.203 52.381 15.82 0.00 33.66 4.00
463 1313 5.284582 AGAGGATGTTAGAGGATCCACTTT 58.715 41.667 17.39 0.00 40.72 2.66
486 1336 3.300388 CTGTAGCTTCCTGACATCCCTA 58.700 50.000 0.00 0.00 0.00 3.53
497 1347 2.076863 ACGCATTTCACTGTAGCTTCC 58.923 47.619 0.00 0.00 0.00 3.46
509 1359 4.536065 TCTTCATTTCACACACGCATTTC 58.464 39.130 0.00 0.00 0.00 2.17
516 1366 4.520492 ACATCCCTTCTTCATTTCACACAC 59.480 41.667 0.00 0.00 0.00 3.82
522 1372 3.950395 CCCTGACATCCCTTCTTCATTTC 59.050 47.826 0.00 0.00 0.00 2.17
525 1375 2.566746 ACCCTGACATCCCTTCTTCAT 58.433 47.619 0.00 0.00 0.00 2.57
526 1376 2.044793 ACCCTGACATCCCTTCTTCA 57.955 50.000 0.00 0.00 0.00 3.02
530 1380 2.188817 ACAGTACCCTGACATCCCTTC 58.811 52.381 0.00 0.00 41.50 3.46
557 1408 3.005261 TGTTGCAGTAAATCCGCACATTT 59.995 39.130 0.00 0.00 34.87 2.32
559 1410 2.158559 TGTTGCAGTAAATCCGCACAT 58.841 42.857 0.00 0.00 34.87 3.21
694 1545 6.037172 CCTTCTTCACGTTCATATGGTTAAGG 59.963 42.308 2.13 0.00 0.00 2.69
707 1558 2.550208 GGTGACATCCCTTCTTCACGTT 60.550 50.000 0.00 0.00 39.46 3.99
709 1560 1.726853 GGTGACATCCCTTCTTCACG 58.273 55.000 0.00 0.00 39.46 4.35
746 1597 9.304335 TGGAATCGGATCATATAAGTTACAGTA 57.696 33.333 0.00 0.00 0.00 2.74
747 1598 8.088981 GTGGAATCGGATCATATAAGTTACAGT 58.911 37.037 0.00 0.00 0.00 3.55
748 1599 8.307483 AGTGGAATCGGATCATATAAGTTACAG 58.693 37.037 0.00 0.00 0.00 2.74
750 1601 7.063544 GCAGTGGAATCGGATCATATAAGTTAC 59.936 40.741 0.00 0.00 0.00 2.50
751 1602 7.097192 GCAGTGGAATCGGATCATATAAGTTA 58.903 38.462 0.00 0.00 0.00 2.24
752 1603 5.934625 GCAGTGGAATCGGATCATATAAGTT 59.065 40.000 0.00 0.00 0.00 2.66
753 1604 5.012046 TGCAGTGGAATCGGATCATATAAGT 59.988 40.000 0.00 0.00 0.00 2.24
754 1605 5.482006 TGCAGTGGAATCGGATCATATAAG 58.518 41.667 0.00 0.00 0.00 1.73
755 1606 5.482006 CTGCAGTGGAATCGGATCATATAA 58.518 41.667 5.25 0.00 0.00 0.98
756 1607 4.081476 CCTGCAGTGGAATCGGATCATATA 60.081 45.833 13.81 0.00 0.00 0.86
757 1608 3.307269 CCTGCAGTGGAATCGGATCATAT 60.307 47.826 13.81 0.00 0.00 1.78
758 1609 2.037641 CCTGCAGTGGAATCGGATCATA 59.962 50.000 13.81 0.00 0.00 2.15
759 1610 1.202734 CCTGCAGTGGAATCGGATCAT 60.203 52.381 13.81 0.00 0.00 2.45
761 1612 0.533755 CCCTGCAGTGGAATCGGATC 60.534 60.000 13.81 0.00 0.00 3.36
762 1613 1.274703 ACCCTGCAGTGGAATCGGAT 61.275 55.000 23.24 1.41 0.00 4.18
764 1615 1.002134 AACCCTGCAGTGGAATCGG 60.002 57.895 23.24 13.46 0.00 4.18
765 1616 0.606401 ACAACCCTGCAGTGGAATCG 60.606 55.000 23.24 12.51 0.00 3.34
766 1617 1.168714 GACAACCCTGCAGTGGAATC 58.831 55.000 23.24 14.51 0.00 2.52
767 1618 0.251341 GGACAACCCTGCAGTGGAAT 60.251 55.000 23.24 11.56 0.00 3.01
769 1620 1.770110 AGGACAACCCTGCAGTGGA 60.770 57.895 23.24 0.00 45.61 4.02
770 1621 2.839098 AGGACAACCCTGCAGTGG 59.161 61.111 13.81 15.65 45.61 4.00
777 1628 9.474054 ACTAACGTGTTTTAGAAGGACAACCCT 62.474 40.741 0.00 0.00 38.43 4.34
778 1629 3.208594 ACGTGTTTTAGAAGGACAACCC 58.791 45.455 0.00 0.00 36.73 4.11
779 1630 4.888038 AACGTGTTTTAGAAGGACAACC 57.112 40.909 0.00 0.00 0.00 3.77
780 1631 6.256321 TGACTAACGTGTTTTAGAAGGACAAC 59.744 38.462 0.00 0.00 33.84 3.32
802 1653 5.708877 ATTCTATACTCGGTAAGCCTGAC 57.291 43.478 0.00 0.00 0.00 3.51
810 1661 3.438087 GCCGCTGTATTCTATACTCGGTA 59.562 47.826 20.67 0.00 36.97 4.02
812 1663 2.728225 CGCCGCTGTATTCTATACTCGG 60.728 54.545 18.02 18.02 37.34 4.63
1026 1880 4.505970 CCCTCCTCCTCCCTGGGG 62.506 77.778 14.00 2.42 36.20 4.96
1204 2061 2.159156 AGGAACAAAGAAAACAACCCGC 60.159 45.455 0.00 0.00 0.00 6.13
1394 2310 5.740513 GCCCTAGAATTGAGTCATGACCTAC 60.741 48.000 22.21 14.05 0.00 3.18
1581 2497 1.425831 TCGAAGACCAATTCCCCCAAA 59.574 47.619 0.00 0.00 0.00 3.28
1605 2521 8.736244 CACATAATCATCAATCAGGCAATATCA 58.264 33.333 0.00 0.00 0.00 2.15
1651 2567 5.632347 TCTCGGAATTCTAGAACACGAAAAC 59.368 40.000 21.02 4.81 0.00 2.43
1653 2569 5.381174 TCTCGGAATTCTAGAACACGAAA 57.619 39.130 21.02 11.33 0.00 3.46
1751 2828 8.936864 AGTCAAAACGAATTTAAGTAGATCAGG 58.063 33.333 0.00 0.00 0.00 3.86
1814 2891 7.628769 TTGCTGATTCAATTGCATAGAAGTA 57.371 32.000 0.00 0.00 35.27 2.24
1815 2892 6.519679 TTGCTGATTCAATTGCATAGAAGT 57.480 33.333 0.00 0.00 35.27 3.01
1816 2893 7.169308 GGAATTGCTGATTCAATTGCATAGAAG 59.831 37.037 13.32 0.00 46.89 2.85
1817 2894 6.982141 GGAATTGCTGATTCAATTGCATAGAA 59.018 34.615 13.32 0.00 46.89 2.10
1913 2994 7.010160 TCCTTATGAATTTAACCCATGGATCC 58.990 38.462 15.22 4.20 0.00 3.36
2042 3124 8.138712 GGGAGTAGTAGTCATAACAAGATCAAG 58.861 40.741 7.30 0.00 0.00 3.02
2062 3144 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2063 3145 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2064 3146 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2065 3147 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2066 3148 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2067 3149 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2068 3150 3.581755 TGACGAGTAATTTGGAACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2069 3151 3.663995 TGACGAGTAATTTGGAACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2070 3152 5.345702 TCTATGACGAGTAATTTGGAACGG 58.654 41.667 0.00 0.00 0.00 4.44
2071 3153 6.530534 ACTTCTATGACGAGTAATTTGGAACG 59.469 38.462 0.00 0.00 0.00 3.95
2072 3154 7.201530 CCACTTCTATGACGAGTAATTTGGAAC 60.202 40.741 0.00 0.00 0.00 3.62
2073 3155 6.816640 CCACTTCTATGACGAGTAATTTGGAA 59.183 38.462 0.00 0.00 0.00 3.53
2074 3156 6.153851 TCCACTTCTATGACGAGTAATTTGGA 59.846 38.462 0.00 0.00 0.00 3.53
2075 3157 6.338146 TCCACTTCTATGACGAGTAATTTGG 58.662 40.000 0.00 0.00 0.00 3.28
2076 3158 7.492669 ACATCCACTTCTATGACGAGTAATTTG 59.507 37.037 0.00 0.00 0.00 2.32
2077 3159 7.556844 ACATCCACTTCTATGACGAGTAATTT 58.443 34.615 0.00 0.00 0.00 1.82
2078 3160 7.113658 ACATCCACTTCTATGACGAGTAATT 57.886 36.000 0.00 0.00 0.00 1.40
2079 3161 6.716934 ACATCCACTTCTATGACGAGTAAT 57.283 37.500 0.00 0.00 0.00 1.89
2080 3162 7.720074 AGATACATCCACTTCTATGACGAGTAA 59.280 37.037 0.00 0.00 0.00 2.24
2081 3163 7.225011 AGATACATCCACTTCTATGACGAGTA 58.775 38.462 0.00 0.00 0.00 2.59
2082 3164 6.065374 AGATACATCCACTTCTATGACGAGT 58.935 40.000 0.00 0.00 0.00 4.18
2083 3165 6.567687 AGATACATCCACTTCTATGACGAG 57.432 41.667 0.00 0.00 0.00 4.18
2084 3166 7.450903 TCTAGATACATCCACTTCTATGACGA 58.549 38.462 0.00 0.00 0.00 4.20
2085 3167 7.674471 TCTAGATACATCCACTTCTATGACG 57.326 40.000 0.00 0.00 0.00 4.35
2086 3168 9.073475 AGTTCTAGATACATCCACTTCTATGAC 57.927 37.037 0.00 0.00 0.00 3.06
2117 3199 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2118 3200 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2119 3201 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2122 3204 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2124 3206 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2125 3207 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2126 3208 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2127 3209 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2129 3211 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2130 3212 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2131 3213 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2132 3214 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2133 3215 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2134 3216 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
2135 3217 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2136 3218 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
2137 3219 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2139 3221 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2140 3222 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2141 3223 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2144 3226 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2145 3227 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2146 3228 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2147 3229 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2148 3230 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2149 3231 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2150 3232 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
2151 3233 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
2152 3234 1.753073 GAAATACTCCCTCCGTTCCGA 59.247 52.381 0.00 0.00 0.00 4.55
2153 3235 1.755380 AGAAATACTCCCTCCGTTCCG 59.245 52.381 0.00 0.00 0.00 4.30
2154 3236 2.764572 TGAGAAATACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 44.34 3.62
2155 3237 3.181474 CCTGAGAAATACTCCCTCCGTTC 60.181 52.174 0.00 0.00 44.34 3.95
2156 3238 2.766828 CCTGAGAAATACTCCCTCCGTT 59.233 50.000 0.00 0.00 44.34 4.44
2158 3240 1.689273 CCCTGAGAAATACTCCCTCCG 59.311 57.143 0.00 0.00 44.34 4.63
2159 3241 2.436173 CACCCTGAGAAATACTCCCTCC 59.564 54.545 0.00 0.00 44.34 4.30
2160 3242 2.436173 CCACCCTGAGAAATACTCCCTC 59.564 54.545 0.00 0.00 44.34 4.30
2162 3244 1.134068 GCCACCCTGAGAAATACTCCC 60.134 57.143 0.00 0.00 44.34 4.30
2163 3245 1.473434 CGCCACCCTGAGAAATACTCC 60.473 57.143 0.00 0.00 44.34 3.85
2164 3246 1.473434 CCGCCACCCTGAGAAATACTC 60.473 57.143 0.00 0.00 45.11 2.59
2165 3247 0.541863 CCGCCACCCTGAGAAATACT 59.458 55.000 0.00 0.00 0.00 2.12
2166 3248 0.539986 TCCGCCACCCTGAGAAATAC 59.460 55.000 0.00 0.00 0.00 1.89
2261 3344 7.306167 GCAAACAAATTAGGCACATGATAATCG 60.306 37.037 0.00 0.00 0.00 3.34
2318 3401 2.133281 TCTGGATGCCACTTTCCATG 57.867 50.000 0.00 0.00 41.09 3.66
2410 3493 7.433719 GTCACATAACATAGTTCTGCTAGTGAG 59.566 40.741 0.00 0.00 32.04 3.51
2732 3815 2.580867 GCAGAGTCAGCGCTACGG 60.581 66.667 10.99 0.00 0.00 4.02
2759 3842 4.133078 CAGACTGAAAGCCAAACTTCTCT 58.867 43.478 0.00 0.00 37.75 3.10
2906 3989 3.129988 CCTCAATTTCCTCAACTGATGGC 59.870 47.826 0.00 0.00 0.00 4.40
3333 4416 5.220835 CGCACATGATTTAGGAGCATTGTAA 60.221 40.000 0.00 0.00 0.00 2.41
3336 4419 3.624900 CGCACATGATTTAGGAGCATTG 58.375 45.455 0.00 0.00 0.00 2.82
3486 4569 5.876357 ACTAGCATCTTTCAACCACCTAAA 58.124 37.500 0.00 0.00 0.00 1.85
3487 4570 5.499004 ACTAGCATCTTTCAACCACCTAA 57.501 39.130 0.00 0.00 0.00 2.69
3588 4671 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3590 4673 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3592 4675 9.750125 AAAAAGTTGAGTCATCTATTTTGGAAC 57.250 29.630 4.14 0.00 0.00 3.62
3628 4711 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3629 4712 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3630 4713 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3631 4714 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3632 4715 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3633 4716 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3634 4717 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3635 4718 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3636 4719 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3637 4720 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3638 4721 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3639 4722 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3640 4723 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3641 4724 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3642 4725 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3643 4726 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3644 4727 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3645 4728 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3646 4729 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3647 4730 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3648 4731 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3649 4732 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3650 4733 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3651 4734 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
3652 4735 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
3653 4736 1.136500 GTCATGTACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
3654 4737 2.100989 AGTCATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 30.33 3.95
3655 4738 1.825474 CAGTCATGTACTCCCTCCGTT 59.175 52.381 0.00 0.00 35.76 4.44
3656 4739 1.005569 TCAGTCATGTACTCCCTCCGT 59.994 52.381 0.00 0.00 35.76 4.69
3657 4740 1.678627 CTCAGTCATGTACTCCCTCCG 59.321 57.143 0.00 0.00 35.76 4.63
3658 4741 2.691011 GTCTCAGTCATGTACTCCCTCC 59.309 54.545 0.00 0.00 35.76 4.30
3659 4742 2.356382 CGTCTCAGTCATGTACTCCCTC 59.644 54.545 0.00 0.00 35.76 4.30
3660 4743 2.291024 ACGTCTCAGTCATGTACTCCCT 60.291 50.000 0.00 0.00 35.76 4.20
3661 4744 2.093106 ACGTCTCAGTCATGTACTCCC 58.907 52.381 0.00 0.00 35.76 4.30
3662 4745 3.190744 TCAACGTCTCAGTCATGTACTCC 59.809 47.826 0.00 0.00 35.76 3.85
3663 4746 4.421033 TCAACGTCTCAGTCATGTACTC 57.579 45.455 0.00 0.00 35.76 2.59
3664 4747 5.392767 AATCAACGTCTCAGTCATGTACT 57.607 39.130 0.00 0.00 39.81 2.73
3677 4760 3.261981 ACATGGACCCTAATCAACGTC 57.738 47.619 0.00 0.00 0.00 4.34
3760 4843 7.798596 TTGTTCACCAAAATGCATGTAATTT 57.201 28.000 0.00 0.00 0.00 1.82
4435 5625 1.519455 CTCGGGTAGCGCCTTTGAG 60.519 63.158 2.29 1.34 37.43 3.02
4436 5626 2.577059 CTCGGGTAGCGCCTTTGA 59.423 61.111 2.29 0.00 37.43 2.69
4437 5627 3.195698 GCTCGGGTAGCGCCTTTG 61.196 66.667 2.29 0.00 42.53 2.77
4740 5955 1.996798 CGAGGTGATAGGAGGCCTTA 58.003 55.000 6.77 0.00 34.61 2.69
4742 5957 1.834822 GCGAGGTGATAGGAGGCCT 60.835 63.158 3.86 3.86 37.71 5.19
4788 6003 1.202842 TCGCCATGCATCATCTCCAAT 60.203 47.619 0.00 0.00 0.00 3.16
4898 6116 0.032952 GTCACACACCGAGCCTGTTA 59.967 55.000 0.00 0.00 0.00 2.41
5082 6797 3.002791 TCATCATCTGAGAAACAACGCC 58.997 45.455 0.00 0.00 0.00 5.68
5154 6875 1.529010 CAGCAGGCTGTTTGGGTCA 60.529 57.895 17.16 0.00 39.10 4.02
5382 7103 2.550277 TCTGATCAGAGGGGTTAGCA 57.450 50.000 21.67 0.00 32.82 3.49
5799 8174 2.533266 TCTGACCACTCTTGCAGTTC 57.467 50.000 0.00 0.00 30.26 3.01
5977 8366 0.179234 TCACGTGCTGAACCTTCCAA 59.821 50.000 11.67 0.00 0.00 3.53
5986 8375 1.737735 CATTCGCCTCACGTGCTGA 60.738 57.895 11.67 2.64 44.19 4.26
6134 8539 6.637254 GCATGAACATAGAAGATTTGCATGAG 59.363 38.462 0.00 0.00 34.18 2.90
6237 8642 1.376424 CTGGTACACTGCAGCTGGG 60.376 63.158 17.12 0.00 0.00 4.45
6313 8721 8.359642 AGATAATTTTGCACTTTTACTGAAGCA 58.640 29.630 0.00 0.00 0.00 3.91
6314 8722 8.642020 CAGATAATTTTGCACTTTTACTGAAGC 58.358 33.333 0.00 0.00 0.00 3.86
6405 8842 5.069781 CACTTCCTTCTCTTTCGGATATCCT 59.930 44.000 19.61 0.00 0.00 3.24
6415 8852 6.365970 TCTATTCTGCACTTCCTTCTCTTT 57.634 37.500 0.00 0.00 0.00 2.52
6529 9024 5.391310 CCATCTTGTCCTTGTCAATCTTTCG 60.391 44.000 0.00 0.00 0.00 3.46
6739 9242 1.136828 AGTTGACTAACCTGGGCACA 58.863 50.000 0.00 0.00 37.52 4.57
6777 9282 3.623203 GCCAGGAGACTTCATTGGATTGA 60.623 47.826 0.00 0.00 40.21 2.57
6807 9312 2.959516 TGCTCAACCTGATGTCGTAAG 58.040 47.619 0.00 0.00 0.00 2.34
6996 9611 3.183793 TGTCGGATCTAGTACGCTGTA 57.816 47.619 0.00 0.00 32.84 2.74
7025 9640 9.624697 GCATCAATAACTTCTGAAATGTAACAA 57.375 29.630 0.00 0.00 0.00 2.83
7173 9796 0.397941 CAGGAAACTCCTCCACAGCA 59.602 55.000 0.00 0.00 45.66 4.41
7199 9836 5.301551 TGCATTGGTGAAGTGTGAGTAAAAT 59.698 36.000 0.00 0.00 0.00 1.82
7260 9897 5.483583 TCCAGCCCTACATTGCTTTTTAATT 59.516 36.000 0.00 0.00 35.12 1.40
7263 9900 4.040936 TCCAGCCCTACATTGCTTTTTA 57.959 40.909 0.00 0.00 35.12 1.52
7344 9987 4.981647 TCTACCTCAATTATTGGTGGGGAT 59.018 41.667 17.05 4.74 35.48 3.85
7406 10050 7.402054 ACAATAACCTGTGATAATGAAGTGGA 58.598 34.615 0.00 0.00 0.00 4.02
7407 10051 7.630242 ACAATAACCTGTGATAATGAAGTGG 57.370 36.000 0.00 0.00 0.00 4.00
7586 10230 6.555463 TCAACCCCAAGTAACCTTATAGAG 57.445 41.667 0.00 0.00 0.00 2.43
7703 10347 6.017109 TGACAATTAGTTCTTGTTCTTCTGGC 60.017 38.462 0.00 0.00 36.98 4.85
8028 10673 7.033530 TGATAAACGAATGGTCAACTTGTTT 57.966 32.000 0.00 0.00 33.23 2.83
8110 10756 7.747155 AATGCACCAATCAATCAAAAATTCA 57.253 28.000 0.00 0.00 0.00 2.57
8138 10784 8.100366 GGGTTATCCATCTCACACATAGTGGT 62.100 46.154 1.93 0.00 41.16 4.16
8176 10822 8.871686 ACCAAAGAAACTTAATGATGTTGTTC 57.128 30.769 0.00 0.00 0.00 3.18
8181 10827 6.074648 TGGGACCAAAGAAACTTAATGATGT 58.925 36.000 0.00 0.00 0.00 3.06
8226 10873 6.458210 CAAATCAAGGCAAGGAAGTAATTGT 58.542 36.000 0.00 0.00 0.00 2.71
8337 10987 5.229887 CCGATATTTTGCATTTGGAAGAACG 59.770 40.000 0.00 0.00 0.00 3.95
8338 10988 6.329496 TCCGATATTTTGCATTTGGAAGAAC 58.671 36.000 0.00 0.00 0.00 3.01
8339 10989 6.405731 CCTCCGATATTTTGCATTTGGAAGAA 60.406 38.462 0.00 0.00 0.00 2.52
8340 10990 5.067674 CCTCCGATATTTTGCATTTGGAAGA 59.932 40.000 0.00 0.00 0.00 2.87
8341 10991 5.067674 TCCTCCGATATTTTGCATTTGGAAG 59.932 40.000 0.00 0.00 0.00 3.46
8342 10992 4.952957 TCCTCCGATATTTTGCATTTGGAA 59.047 37.500 0.00 0.00 0.00 3.53
8343 10993 4.531854 TCCTCCGATATTTTGCATTTGGA 58.468 39.130 0.00 0.00 0.00 3.53
8344 10994 4.916983 TCCTCCGATATTTTGCATTTGG 57.083 40.909 0.00 0.00 0.00 3.28
8345 10995 7.593875 TTTTTCCTCCGATATTTTGCATTTG 57.406 32.000 0.00 0.00 0.00 2.32
8368 11018 6.600822 CCAGTGAGATGTATCAGGAACATTTT 59.399 38.462 0.00 0.00 37.69 1.82
8370 11020 5.190528 ACCAGTGAGATGTATCAGGAACATT 59.809 40.000 0.00 0.00 37.69 2.71
8414 11064 8.362639 ACTTGGAACAGTTTATAGAGTACGAAA 58.637 33.333 0.00 0.00 42.39 3.46
8415 11065 7.889469 ACTTGGAACAGTTTATAGAGTACGAA 58.111 34.615 0.00 0.00 42.39 3.85
8416 11066 7.458409 ACTTGGAACAGTTTATAGAGTACGA 57.542 36.000 0.00 0.00 42.39 3.43
8446 11108 3.610911 GAATCCTCGACTCCAACCAATT 58.389 45.455 0.00 0.00 0.00 2.32
8724 11386 2.667318 CGCATCGTGGGTGTGACAC 61.667 63.158 7.29 7.29 35.55 3.67
8725 11387 2.356913 CGCATCGTGGGTGTGACA 60.357 61.111 0.00 0.00 0.00 3.58
8726 11388 3.118454 CCGCATCGTGGGTGTGAC 61.118 66.667 0.00 0.00 0.00 3.67
8728 11390 2.923426 ATAGCCGCATCGTGGGTGTG 62.923 60.000 8.47 0.00 44.01 3.82
8729 11391 1.396607 TATAGCCGCATCGTGGGTGT 61.397 55.000 8.47 4.53 44.01 4.16
8730 11392 0.037326 ATATAGCCGCATCGTGGGTG 60.037 55.000 8.47 0.00 44.01 4.61
8731 11393 0.246635 GATATAGCCGCATCGTGGGT 59.753 55.000 3.52 3.52 46.10 4.51
8732 11394 0.532573 AGATATAGCCGCATCGTGGG 59.467 55.000 0.00 0.00 33.18 4.61
8733 11395 1.469940 GGAGATATAGCCGCATCGTGG 60.470 57.143 0.00 0.00 36.10 4.94
8735 11397 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
8736 11398 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
8737 11399 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
8738 11400 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
8739 11401 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
8740 11402 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
8741 11403 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
8743 11405 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
8745 11407 2.292569 GCTTCGACACGTGGGAGATATA 59.707 50.000 21.57 0.63 0.00 0.86
8746 11408 1.067212 GCTTCGACACGTGGGAGATAT 59.933 52.381 21.57 0.00 0.00 1.63
8747 11409 0.454600 GCTTCGACACGTGGGAGATA 59.545 55.000 21.57 1.34 0.00 1.98
8748 11410 1.215647 GCTTCGACACGTGGGAGAT 59.784 57.895 21.57 0.00 0.00 2.75
8749 11411 2.197605 TGCTTCGACACGTGGGAGA 61.198 57.895 21.57 12.82 0.00 3.71
8751 11413 2.028484 GTGCTTCGACACGTGGGA 59.972 61.111 21.57 13.88 0.00 4.37
8762 11424 1.726853 ATGCCTGTAAGTCGTGCTTC 58.273 50.000 0.00 0.00 38.57 3.86
8763 11425 3.000727 GTTATGCCTGTAAGTCGTGCTT 58.999 45.455 0.00 1.30 41.05 3.91
8764 11426 2.618053 GTTATGCCTGTAAGTCGTGCT 58.382 47.619 0.00 0.00 0.00 4.40
8765 11427 1.664151 GGTTATGCCTGTAAGTCGTGC 59.336 52.381 0.00 0.00 0.00 5.34
8766 11428 1.924524 CGGTTATGCCTGTAAGTCGTG 59.075 52.381 0.00 0.00 34.25 4.35
8767 11429 1.738030 GCGGTTATGCCTGTAAGTCGT 60.738 52.381 0.00 0.00 34.25 4.34
8769 11431 2.018542 TGCGGTTATGCCTGTAAGTC 57.981 50.000 0.00 0.00 34.25 3.01
8770 11432 2.288666 CATGCGGTTATGCCTGTAAGT 58.711 47.619 0.00 0.00 34.25 2.24
8772 11434 1.065053 ACCATGCGGTTATGCCTGTAA 60.065 47.619 0.00 0.00 46.31 2.41
8773 11435 0.544223 ACCATGCGGTTATGCCTGTA 59.456 50.000 0.00 0.00 46.31 2.74
8774 11436 1.031571 CACCATGCGGTTATGCCTGT 61.032 55.000 0.00 0.00 46.31 4.00
8775 11437 1.727511 CCACCATGCGGTTATGCCTG 61.728 60.000 0.00 0.00 46.31 4.85
8776 11438 1.453745 CCACCATGCGGTTATGCCT 60.454 57.895 0.00 0.00 46.31 4.75
8777 11439 1.319614 AACCACCATGCGGTTATGCC 61.320 55.000 14.32 0.00 46.31 4.40
8778 11440 0.530288 AAACCACCATGCGGTTATGC 59.470 50.000 15.78 0.00 46.31 3.14
8779 11441 2.029470 ACAAAACCACCATGCGGTTATG 60.029 45.455 15.78 0.00 46.31 1.90
8780 11442 2.230266 GACAAAACCACCATGCGGTTAT 59.770 45.455 15.78 7.09 46.31 1.89
8781 11443 1.609555 GACAAAACCACCATGCGGTTA 59.390 47.619 15.78 0.00 46.31 2.85
8782 11444 0.387565 GACAAAACCACCATGCGGTT 59.612 50.000 11.03 11.03 46.31 4.44
8785 11447 1.729131 GCGACAAAACCACCATGCG 60.729 57.895 0.00 0.00 0.00 4.73
8787 11449 3.955291 TTGCGACAAAACCACCATG 57.045 47.368 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.