Multiple sequence alignment - TraesCS1B01G146400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G146400 chr1B 100.000 9876 0 0 1 9876 204414234 204404359 0.000000e+00 18238.0
1 TraesCS1B01G146400 chr1B 98.706 1391 18 0 5407 6797 368547033 368545643 0.000000e+00 2470.0
2 TraesCS1B01G146400 chr1B 97.883 1417 27 3 5407 6820 266268169 266266753 0.000000e+00 2447.0
3 TraesCS1B01G146400 chr1B 97.101 138 4 0 4078 4215 204410294 204410157 5.960000e-57 233.0
4 TraesCS1B01G146400 chr1B 90.909 110 10 0 4171 4280 656376181 656376072 2.220000e-31 148.0
5 TraesCS1B01G146400 chr1D 96.189 2309 42 9 6813 9091 132856444 132854152 0.000000e+00 3735.0
6 TraesCS1B01G146400 chr1D 96.910 1327 37 1 4079 5405 132857760 132856438 0.000000e+00 2220.0
7 TraesCS1B01G146400 chr1D 95.206 1335 44 6 734 2052 132861993 132860663 0.000000e+00 2093.0
8 TraesCS1B01G146400 chr1D 95.218 941 19 10 2045 2959 132860618 132859678 0.000000e+00 1465.0
9 TraesCS1B01G146400 chr1D 95.929 737 18 4 3137 3872 132859577 132858852 0.000000e+00 1184.0
10 TraesCS1B01G146400 chr1D 87.978 366 30 5 9442 9798 132853611 132853251 4.270000e-113 420.0
11 TraesCS1B01G146400 chr1D 92.527 281 12 6 9103 9378 132853987 132853711 2.590000e-105 394.0
12 TraesCS1B01G146400 chr1D 96.000 225 9 0 3854 4078 132857848 132857624 5.640000e-97 366.0
13 TraesCS1B01G146400 chr1D 95.420 131 4 1 2955 3083 43298892 43298762 3.620000e-49 207.0
14 TraesCS1B01G146400 chr1D 83.660 153 18 3 4135 4283 162062516 162062367 4.810000e-28 137.0
15 TraesCS1B01G146400 chr1D 90.588 85 7 1 3782 3865 330770337 330770421 2.920000e-20 111.0
16 TraesCS1B01G146400 chr1D 90.361 83 6 2 3785 3866 264129201 264129120 3.770000e-19 108.0
17 TraesCS1B01G146400 chr1D 89.412 85 9 0 3782 3866 364380905 364380989 3.770000e-19 108.0
18 TraesCS1B01G146400 chr1D 89.535 86 5 4 3782 3865 22440963 22441046 1.360000e-18 106.0
19 TraesCS1B01G146400 chr1D 87.500 88 10 1 3783 3869 490306477 490306390 6.310000e-17 100.0
20 TraesCS1B01G146400 chr1D 94.444 54 3 0 3084 3137 132859680 132859627 6.360000e-12 84.2
21 TraesCS1B01G146400 chr1D 100.000 29 0 0 9082 9110 132854134 132854106 5.000000e-03 54.7
22 TraesCS1B01G146400 chr5B 98.505 1405 20 1 5407 6811 136052971 136051568 0.000000e+00 2477.0
23 TraesCS1B01G146400 chr5B 98.364 1406 22 1 5407 6812 261578810 261577406 0.000000e+00 2468.0
24 TraesCS1B01G146400 chr5B 82.660 842 118 16 4481 5316 448284925 448284106 0.000000e+00 721.0
25 TraesCS1B01G146400 chr5B 82.754 806 97 23 6813 7601 448298468 448297688 0.000000e+00 680.0
26 TraesCS1B01G146400 chr5B 85.106 564 71 11 4849 5405 448299019 448298462 1.860000e-156 564.0
27 TraesCS1B01G146400 chr5B 83.250 597 59 25 8504 9086 448297681 448297112 2.460000e-140 510.0
28 TraesCS1B01G146400 chr5B 77.595 973 111 43 8309 9212 448279630 448278696 3.210000e-134 490.0
29 TraesCS1B01G146400 chr5B 83.750 240 31 2 6858 7097 448284000 448283769 4.640000e-53 220.0
30 TraesCS1B01G146400 chr5B 93.382 136 9 0 2961 3096 148500193 148500058 1.680000e-47 202.0
31 TraesCS1B01G146400 chr5B 89.262 149 12 3 3782 3927 472739581 472739728 6.090000e-42 183.0
32 TraesCS1B01G146400 chr5B 88.136 118 14 0 4174 4291 215883948 215883831 3.720000e-29 141.0
33 TraesCS1B01G146400 chrUn 98.294 1407 23 1 5407 6813 86973672 86972267 0.000000e+00 2464.0
34 TraesCS1B01G146400 chrUn 84.758 538 76 6 1 535 143912406 143911872 1.460000e-147 534.0
35 TraesCS1B01G146400 chrUn 91.724 145 12 0 2944 3088 30189201 30189345 1.680000e-47 202.0
36 TraesCS1B01G146400 chr4B 98.224 1408 24 1 5407 6814 322671529 322670123 0.000000e+00 2460.0
37 TraesCS1B01G146400 chr4B 92.135 534 42 0 1 534 246029822 246030355 0.000000e+00 754.0
38 TraesCS1B01G146400 chr4B 92.731 509 37 0 1 509 193483711 193483203 0.000000e+00 736.0
39 TraesCS1B01G146400 chr4B 89.545 220 18 4 2499 2713 258762551 258762332 3.510000e-69 274.0
40 TraesCS1B01G146400 chr4B 94.253 87 4 1 3782 3867 27399450 27399536 2.240000e-26 132.0
41 TraesCS1B01G146400 chr5A 98.223 1407 24 1 5407 6813 483275195 483276600 0.000000e+00 2459.0
42 TraesCS1B01G146400 chr5A 83.386 638 92 8 6858 7495 476757387 476756764 6.650000e-161 579.0
43 TraesCS1B01G146400 chr5A 82.353 357 34 17 8500 8855 476755579 476755251 5.840000e-72 283.0
44 TraesCS1B01G146400 chr5A 94.083 169 10 0 3871 4039 320214405 320214237 3.540000e-64 257.0
45 TraesCS1B01G146400 chr5A 83.817 241 32 7 3785 4021 569715260 569715023 1.290000e-53 222.0
46 TraesCS1B01G146400 chr5A 96.907 97 3 0 4080 4176 320214333 320214237 7.940000e-36 163.0
47 TraesCS1B01G146400 chr5A 84.337 166 25 1 9370 9535 204344841 204345005 2.850000e-35 161.0
48 TraesCS1B01G146400 chr5A 94.643 56 3 0 8842 8897 476755234 476755179 4.910000e-13 87.9
49 TraesCS1B01G146400 chr7A 98.152 1407 25 1 5407 6813 326988782 326987377 0.000000e+00 2453.0
50 TraesCS1B01G146400 chr7A 88.636 220 20 4 2499 2713 442273814 442273595 7.610000e-66 263.0
51 TraesCS1B01G146400 chr7A 94.444 162 9 0 3869 4030 494786827 494786988 5.920000e-62 250.0
52 TraesCS1B01G146400 chr7A 81.356 295 42 9 2431 2713 472930705 472930998 2.770000e-55 228.0
53 TraesCS1B01G146400 chr7A 92.308 143 10 1 2942 3083 173720140 173720282 1.680000e-47 202.0
54 TraesCS1B01G146400 chr7A 83.511 188 30 1 9364 9551 373864698 373864884 3.670000e-39 174.0
55 TraesCS1B01G146400 chr7A 91.667 84 7 0 3676 3759 365081191 365081274 6.270000e-22 117.0
56 TraesCS1B01G146400 chr3B 98.020 1414 23 5 5408 6819 695916432 695915022 0.000000e+00 2451.0
57 TraesCS1B01G146400 chr3B 76.111 540 102 21 6962 7489 193960372 193960896 3.540000e-64 257.0
58 TraesCS1B01G146400 chr1A 96.935 1305 31 5 6813 8112 166320069 166321369 0.000000e+00 2180.0
59 TraesCS1B01G146400 chr1A 94.037 1392 55 12 668 2046 166315388 166316764 0.000000e+00 2085.0
60 TraesCS1B01G146400 chr1A 96.766 1237 40 0 4169 5405 166318839 166320075 0.000000e+00 2063.0
61 TraesCS1B01G146400 chr1A 93.455 1375 49 15 8055 9399 166321369 166322732 0.000000e+00 2002.0
62 TraesCS1B01G146400 chr1A 92.159 931 40 13 2045 2959 166316815 166317728 0.000000e+00 1284.0
63 TraesCS1B01G146400 chr1A 85.191 655 36 25 3178 3784 166318085 166318726 5.070000e-172 616.0
64 TraesCS1B01G146400 chr1A 83.455 411 50 11 9440 9839 166322735 166323138 5.640000e-97 366.0
65 TraesCS1B01G146400 chr1A 96.748 123 4 0 2961 3083 487490726 487490848 1.300000e-48 206.0
66 TraesCS1B01G146400 chr1A 88.189 127 11 2 4158 4280 222350469 222350595 2.220000e-31 148.0
67 TraesCS1B01G146400 chr1A 82.456 171 23 5 9370 9535 543653911 543654079 1.030000e-29 143.0
68 TraesCS1B01G146400 chr1A 98.113 53 1 0 3085 3137 166317729 166317781 1.060000e-14 93.5
69 TraesCS1B01G146400 chr1A 100.000 47 0 0 4032 4078 166318839 166318885 4.910000e-13 87.9
70 TraesCS1B01G146400 chr5D 84.888 847 94 19 4588 5405 375450040 375449199 0.000000e+00 824.0
71 TraesCS1B01G146400 chr5D 83.333 744 104 13 6858 7594 375413098 375412368 0.000000e+00 669.0
72 TraesCS1B01G146400 chr5D 84.572 538 75 8 1 534 316813047 316813580 2.440000e-145 527.0
73 TraesCS1B01G146400 chr5D 83.705 583 60 23 8504 9078 375440738 375440183 1.470000e-142 518.0
74 TraesCS1B01G146400 chr5D 87.033 455 55 3 4863 5316 375413655 375413204 2.460000e-140 510.0
75 TraesCS1B01G146400 chr5D 82.944 557 81 11 7056 7601 375441298 375440745 3.210000e-134 490.0
76 TraesCS1B01G146400 chr5D 81.564 537 92 7 1 534 114911309 114911841 4.240000e-118 436.0
77 TraesCS1B01G146400 chr5D 82.058 379 47 8 8309 8668 375411765 375411389 4.480000e-78 303.0
78 TraesCS1B01G146400 chr5D 83.936 249 33 6 3785 4030 475153203 475152959 2.150000e-56 231.0
79 TraesCS1B01G146400 chr5D 94.656 131 7 0 2953 3083 361647936 361648066 4.680000e-48 204.0
80 TraesCS1B01G146400 chr5D 81.496 254 27 8 6813 7065 375449205 375448971 3.640000e-44 191.0
81 TraesCS1B01G146400 chr5D 84.153 183 13 9 8842 9015 375411242 375411067 7.940000e-36 163.0
82 TraesCS1B01G146400 chr5D 91.509 106 9 0 8751 8856 375411363 375411258 7.990000e-31 147.0
83 TraesCS1B01G146400 chr5D 94.186 86 4 1 3782 3866 450203254 450203169 8.050000e-26 130.0
84 TraesCS1B01G146400 chr5D 92.135 89 6 1 3782 3869 77075673 77075585 3.750000e-24 124.0
85 TraesCS1B01G146400 chr2B 88.641 537 56 4 1 534 150139113 150139647 0.000000e+00 649.0
86 TraesCS1B01G146400 chr2B 93.373 166 10 1 3870 4035 366017680 366017516 2.760000e-60 244.0
87 TraesCS1B01G146400 chr2B 88.660 97 11 0 3664 3760 407236910 407237006 1.740000e-22 119.0
88 TraesCS1B01G146400 chr2B 76.667 210 24 12 3449 3635 407236698 407236905 1.060000e-14 93.5
89 TraesCS1B01G146400 chr6A 85.448 536 74 4 1 534 416689462 416688929 1.120000e-153 555.0
90 TraesCS1B01G146400 chr6A 83.525 261 33 7 2463 2713 160600221 160600481 1.660000e-57 235.0
91 TraesCS1B01G146400 chr4D 84.944 538 73 8 1 534 177473675 177474208 1.130000e-148 538.0
92 TraesCS1B01G146400 chr4D 92.754 138 10 0 2956 3093 108872524 108872387 6.050000e-47 200.0
93 TraesCS1B01G146400 chr4D 97.753 89 2 0 4079 4167 36603118 36603206 4.780000e-33 154.0
94 TraesCS1B01G146400 chr4D 93.939 99 6 0 4082 4180 486775831 486775929 6.180000e-32 150.0
95 TraesCS1B01G146400 chr4D 93.939 99 5 1 4079 4176 75266819 75266917 2.220000e-31 148.0
96 TraesCS1B01G146400 chr4D 91.765 85 6 1 3782 3865 79220774 79220858 6.270000e-22 117.0
97 TraesCS1B01G146400 chr4D 90.909 88 7 1 3782 3868 428946463 428946376 6.270000e-22 117.0
98 TraesCS1B01G146400 chr4D 90.805 87 7 1 3782 3867 226205504 226205418 2.250000e-21 115.0
99 TraesCS1B01G146400 chr4D 89.011 91 10 0 3664 3754 190479905 190479995 8.110000e-21 113.0
100 TraesCS1B01G146400 chr4D 82.400 125 17 4 3750 3869 461277439 461277563 4.880000e-18 104.0
101 TraesCS1B01G146400 chr4A 80.519 539 94 11 1 534 716778932 716778400 4.300000e-108 403.0
102 TraesCS1B01G146400 chr4A 94.175 103 4 2 4078 4179 101750387 101750488 1.330000e-33 156.0
103 TraesCS1B01G146400 chr4A 91.753 97 5 3 3782 3875 38745275 38745371 2.240000e-26 132.0
104 TraesCS1B01G146400 chr4A 87.912 91 11 0 3664 3754 405572270 405572360 3.770000e-19 108.0
105 TraesCS1B01G146400 chr2D 89.041 219 20 4 2499 2713 507196051 507196269 1.640000e-67 268.0
106 TraesCS1B01G146400 chr2D 92.486 173 10 3 3863 4035 296364043 296364212 2.760000e-60 244.0
107 TraesCS1B01G146400 chr2D 92.814 167 11 1 3870 4036 373883596 373883431 3.560000e-59 241.0
108 TraesCS1B01G146400 chr2D 91.228 114 9 1 4167 4280 238158289 238158401 4.780000e-33 154.0
109 TraesCS1B01G146400 chr2D 88.889 108 9 3 3786 3891 484901213 484901107 8.050000e-26 130.0
110 TraesCS1B01G146400 chr2D 93.258 89 5 1 3782 3869 543312589 543312501 8.050000e-26 130.0
111 TraesCS1B01G146400 chr2D 89.691 97 10 0 3664 3760 342100337 342100433 3.750000e-24 124.0
112 TraesCS1B01G146400 chr2D 92.308 52 3 1 3453 3504 516329329 516329379 1.380000e-08 73.1
113 TraesCS1B01G146400 chr7D 88.636 220 19 5 2499 2713 83997619 83997837 7.610000e-66 263.0
114 TraesCS1B01G146400 chr7D 88.636 220 20 4 2499 2713 209720362 209720581 7.610000e-66 263.0
115 TraesCS1B01G146400 chr7D 96.774 124 4 0 2964 3087 605155350 605155227 3.620000e-49 207.0
116 TraesCS1B01G146400 chr7D 93.407 91 5 1 3782 3871 628411016 628410926 6.220000e-27 134.0
117 TraesCS1B01G146400 chr6D 88.636 220 20 5 2499 2713 408547716 408547935 7.610000e-66 263.0
118 TraesCS1B01G146400 chr6D 93.269 104 7 0 4080 4183 21052060 21051957 4.780000e-33 154.0
119 TraesCS1B01G146400 chr6D 94.186 86 2 3 3782 3865 460578030 460578114 2.900000e-25 128.0
120 TraesCS1B01G146400 chr6D 93.023 86 4 2 3782 3865 144280076 144280161 3.750000e-24 124.0
121 TraesCS1B01G146400 chr6D 91.954 87 5 2 3782 3866 456555468 456555554 4.840000e-23 121.0
122 TraesCS1B01G146400 chr6D 91.860 86 4 3 3782 3865 136474630 136474714 6.270000e-22 117.0
123 TraesCS1B01G146400 chr3A 76.155 541 100 23 6962 7489 151317015 151317539 3.540000e-64 257.0
124 TraesCS1B01G146400 chr3A 82.258 186 28 4 9370 9551 519234780 519234596 1.330000e-33 156.0
125 TraesCS1B01G146400 chr3A 96.512 86 3 0 4080 4165 638067469 638067554 1.030000e-29 143.0
126 TraesCS1B01G146400 chr3A 90.476 63 6 0 3684 3746 144157336 144157274 6.360000e-12 84.2
127 TraesCS1B01G146400 chr7B 85.271 258 27 9 3782 4030 586306851 586306596 1.270000e-63 255.0
128 TraesCS1B01G146400 chr7B 82.879 257 35 7 2465 2713 151678615 151678870 1.290000e-53 222.0
129 TraesCS1B01G146400 chr7B 91.818 110 9 0 4171 4280 199757873 199757982 4.780000e-33 154.0
130 TraesCS1B01G146400 chr3D 75.970 541 101 23 6962 7489 135734332 135734856 1.650000e-62 252.0
131 TraesCS1B01G146400 chr3D 94.118 136 6 1 2957 3090 283321253 283321118 1.300000e-48 206.0
132 TraesCS1B01G146400 chr3D 93.478 138 7 2 2958 3093 313497689 313497826 4.680000e-48 204.0
133 TraesCS1B01G146400 chr3D 85.621 153 17 3 9370 9518 5509723 5509572 1.330000e-33 156.0
134 TraesCS1B01G146400 chr3D 80.952 189 30 3 9366 9551 300413682 300413867 2.870000e-30 145.0
135 TraesCS1B01G146400 chr3D 90.217 92 7 2 3782 3871 2403130 2403039 1.740000e-22 119.0
136 TraesCS1B01G146400 chr6B 90.604 149 12 2 2951 3097 582866933 582867081 7.830000e-46 196.0
137 TraesCS1B01G146400 chr6B 81.006 179 33 1 9373 9551 673612091 673611914 3.720000e-29 141.0
138 TraesCS1B01G146400 chr2A 91.818 110 9 0 4171 4280 270466947 270467056 4.780000e-33 154.0
139 TraesCS1B01G146400 chr2A 91.489 94 8 0 3320 3413 451810574 451810667 8.050000e-26 130.0
140 TraesCS1B01G146400 chr2A 89.583 96 10 0 3664 3759 451811076 451811171 1.350000e-23 122.0
141 TraesCS1B01G146400 chr2A 77.914 163 15 10 3492 3635 451810911 451811071 2.290000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G146400 chr1B 204404359 204414234 9875 True 18238.000000 18238 100.000000 1 9876 1 chr1B.!!$R1 9875
1 TraesCS1B01G146400 chr1B 368545643 368547033 1390 True 2470.000000 2470 98.706000 5407 6797 1 chr1B.!!$R4 1390
2 TraesCS1B01G146400 chr1B 266266753 266268169 1416 True 2447.000000 2447 97.883000 5407 6820 1 chr1B.!!$R3 1413
3 TraesCS1B01G146400 chr1D 132853251 132861993 8742 True 1201.590000 3735 95.040100 734 9798 10 chr1D.!!$R5 9064
4 TraesCS1B01G146400 chr5B 136051568 136052971 1403 True 2477.000000 2477 98.505000 5407 6811 1 chr5B.!!$R1 1404
5 TraesCS1B01G146400 chr5B 261577406 261578810 1404 True 2468.000000 2468 98.364000 5407 6812 1 chr5B.!!$R4 1405
6 TraesCS1B01G146400 chr5B 448297112 448299019 1907 True 584.666667 680 83.703333 4849 9086 3 chr5B.!!$R7 4237
7 TraesCS1B01G146400 chr5B 448278696 448279630 934 True 490.000000 490 77.595000 8309 9212 1 chr5B.!!$R5 903
8 TraesCS1B01G146400 chr5B 448283769 448284925 1156 True 470.500000 721 83.205000 4481 7097 2 chr5B.!!$R6 2616
9 TraesCS1B01G146400 chrUn 86972267 86973672 1405 True 2464.000000 2464 98.294000 5407 6813 1 chrUn.!!$R1 1406
10 TraesCS1B01G146400 chrUn 143911872 143912406 534 True 534.000000 534 84.758000 1 535 1 chrUn.!!$R2 534
11 TraesCS1B01G146400 chr4B 322670123 322671529 1406 True 2460.000000 2460 98.224000 5407 6814 1 chr4B.!!$R3 1407
12 TraesCS1B01G146400 chr4B 246029822 246030355 533 False 754.000000 754 92.135000 1 534 1 chr4B.!!$F2 533
13 TraesCS1B01G146400 chr4B 193483203 193483711 508 True 736.000000 736 92.731000 1 509 1 chr4B.!!$R1 508
14 TraesCS1B01G146400 chr5A 483275195 483276600 1405 False 2459.000000 2459 98.223000 5407 6813 1 chr5A.!!$F2 1406
15 TraesCS1B01G146400 chr5A 476755179 476757387 2208 True 316.633333 579 86.794000 6858 8897 3 chr5A.!!$R3 2039
16 TraesCS1B01G146400 chr7A 326987377 326988782 1405 True 2453.000000 2453 98.152000 5407 6813 1 chr7A.!!$R1 1406
17 TraesCS1B01G146400 chr3B 695915022 695916432 1410 True 2451.000000 2451 98.020000 5408 6819 1 chr3B.!!$R1 1411
18 TraesCS1B01G146400 chr3B 193960372 193960896 524 False 257.000000 257 76.111000 6962 7489 1 chr3B.!!$F1 527
19 TraesCS1B01G146400 chr1A 166315388 166323138 7750 False 1197.488889 2180 93.345667 668 9839 9 chr1A.!!$F4 9171
20 TraesCS1B01G146400 chr5D 316813047 316813580 533 False 527.000000 527 84.572000 1 534 1 chr5D.!!$F2 533
21 TraesCS1B01G146400 chr5D 375448971 375450040 1069 True 507.500000 824 83.192000 4588 7065 2 chr5D.!!$R6 2477
22 TraesCS1B01G146400 chr5D 375440183 375441298 1115 True 504.000000 518 83.324500 7056 9078 2 chr5D.!!$R5 2022
23 TraesCS1B01G146400 chr5D 114911309 114911841 532 False 436.000000 436 81.564000 1 534 1 chr5D.!!$F1 533
24 TraesCS1B01G146400 chr5D 375411067 375413655 2588 True 358.400000 669 85.617200 4863 9015 5 chr5D.!!$R4 4152
25 TraesCS1B01G146400 chr2B 150139113 150139647 534 False 649.000000 649 88.641000 1 534 1 chr2B.!!$F1 533
26 TraesCS1B01G146400 chr6A 416688929 416689462 533 True 555.000000 555 85.448000 1 534 1 chr6A.!!$R1 533
27 TraesCS1B01G146400 chr4D 177473675 177474208 533 False 538.000000 538 84.944000 1 534 1 chr4D.!!$F4 533
28 TraesCS1B01G146400 chr4A 716778400 716778932 532 True 403.000000 403 80.519000 1 534 1 chr4A.!!$R1 533
29 TraesCS1B01G146400 chr3A 151317015 151317539 524 False 257.000000 257 76.155000 6962 7489 1 chr3A.!!$F1 527
30 TraesCS1B01G146400 chr3D 135734332 135734856 524 False 252.000000 252 75.970000 6962 7489 1 chr3D.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 681 0.030638 AACAAGCGCCACACACAATC 59.969 50.000 2.29 0.0 0.00 2.67 F
1535 1554 1.145571 TTGGCCTACTTGGGTCTTGT 58.854 50.000 3.32 0.0 36.00 3.16 F
2978 3090 0.323451 GCTCCCTCCGTCCCAAAATT 60.323 55.000 0.00 0.0 0.00 1.82 F
3083 3195 0.323451 AATTTTGGGACGGAGGGAGC 60.323 55.000 0.00 0.0 0.00 4.70 F
3350 3725 0.526662 GTCTCAGTCGGGTTGTCGAT 59.473 55.000 0.00 0.0 41.40 3.59 F
4171 5716 0.325296 TAGGAACGGAGGGAGCATGT 60.325 55.000 0.00 0.0 0.00 3.21 F
4280 5825 0.468226 TGTCAACCTCGGCTTGACTT 59.532 50.000 21.07 0.0 45.28 3.01 F
4311 5856 2.146342 CTTTAGTGTCACTGTGCTGGG 58.854 52.381 16.03 0.0 0.00 4.45 F
6168 7746 2.823154 CGGTATTTGGGGTCAATGTTGT 59.177 45.455 0.00 0.0 32.28 3.32 F
6337 7915 0.246910 TTGTATGGCGCGGAGTGTTA 59.753 50.000 8.83 0.0 41.96 2.41 F
7527 9261 0.526524 CTCTCGCAGTTCCCGACATC 60.527 60.000 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 1996 0.811915 CGACACCCTAGAGACACCAG 59.188 60.000 0.00 0.00 0.00 4.00 R
2959 3071 0.323451 AATTTTGGGACGGAGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70 R
4015 5393 0.325296 ACATGCTCCCTCCGTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94 R
4154 5699 0.759346 ATACATGCTCCCTCCGTTCC 59.241 55.000 0.00 0.00 0.00 3.62 R
4668 6216 1.186200 TGTAGCTCGGCTTCAGATGT 58.814 50.000 3.71 0.00 40.44 3.06 R
5404 6982 1.835494 ACTCCGTCTCCATTCTTCGA 58.165 50.000 0.00 0.00 0.00 3.71 R
6168 7746 3.145861 TCATCAATACCCCCATCCTCCTA 59.854 47.826 0.00 0.00 0.00 2.94 R
6308 7886 1.226945 GCCATACAACATTGCGGGC 60.227 57.895 6.16 6.16 35.69 6.13 R
7527 9261 1.139989 CAGTGAGTACTTGTGCACCG 58.860 55.000 15.69 8.09 34.07 4.94 R
8069 9843 3.636679 TGGTTCAAATGTTCAAGGTCCA 58.363 40.909 0.00 0.00 0.00 4.02 R
9290 11574 0.739462 ACGCGCTGCAGCATTACTTA 60.739 50.000 36.03 0.00 42.21 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.301677 GAGCTGCCCGTTCTCAAAGG 61.302 60.000 0.00 0.00 0.00 3.11
92 93 5.720041 AGGCAGTATGGTCTAGTTTGTCTTA 59.280 40.000 0.00 0.00 35.86 2.10
97 98 8.041323 CAGTATGGTCTAGTTTGTCTTATTGGT 58.959 37.037 0.00 0.00 0.00 3.67
120 121 0.904865 ACTGTCAGGGCCTCATCGAA 60.905 55.000 0.95 0.00 0.00 3.71
141 142 3.545124 ATGCCGGCCAAACGACTGA 62.545 57.895 26.77 0.00 35.47 3.41
169 170 1.073125 TGGAAAAGGTCGAAGCCATGA 59.927 47.619 0.00 0.00 0.00 3.07
301 302 0.740868 GGTGCAAGCTGTGATCGCTA 60.741 55.000 7.94 0.00 36.56 4.26
308 309 4.554292 CAAGCTGTGATCGCTAGTATCAT 58.446 43.478 7.94 0.00 36.56 2.45
365 366 0.826715 CAGATTCTGAGCCCCTTCGA 59.173 55.000 8.00 0.00 32.44 3.71
392 393 5.364157 ACCCTCCATGAGATAGTAGTTGTTC 59.636 44.000 0.00 0.00 0.00 3.18
451 453 5.488919 TCTTCTGTTTACCTCCTTGATCCAT 59.511 40.000 0.00 0.00 0.00 3.41
466 468 1.208706 TCCATGGATCACCGCCTTTA 58.791 50.000 11.44 0.00 39.42 1.85
514 516 5.628797 AATCAATGAAACCCCAGTGTTTT 57.371 34.783 0.00 0.00 38.51 2.43
550 552 2.168326 AAATTCCTTTTTGCCTGCCG 57.832 45.000 0.00 0.00 0.00 5.69
551 553 1.047801 AATTCCTTTTTGCCTGCCGT 58.952 45.000 0.00 0.00 0.00 5.68
552 554 1.047801 ATTCCTTTTTGCCTGCCGTT 58.952 45.000 0.00 0.00 0.00 4.44
553 555 0.827368 TTCCTTTTTGCCTGCCGTTT 59.173 45.000 0.00 0.00 0.00 3.60
554 556 0.103937 TCCTTTTTGCCTGCCGTTTG 59.896 50.000 0.00 0.00 0.00 2.93
555 557 0.879839 CCTTTTTGCCTGCCGTTTGG 60.880 55.000 0.00 0.00 38.77 3.28
565 567 2.644992 CCGTTTGGCAGACAAGGC 59.355 61.111 9.00 0.00 40.82 4.35
566 568 2.252260 CGTTTGGCAGACAAGGCG 59.748 61.111 9.00 1.39 40.82 5.52
567 569 2.050077 GTTTGGCAGACAAGGCGC 60.050 61.111 0.00 0.00 40.82 6.53
568 570 3.659092 TTTGGCAGACAAGGCGCG 61.659 61.111 0.00 0.00 40.82 6.86
575 577 4.547367 GACAAGGCGCGCCCCTAT 62.547 66.667 44.47 28.49 33.97 2.57
576 578 4.547367 ACAAGGCGCGCCCCTATC 62.547 66.667 44.47 20.79 33.97 2.08
577 579 4.241555 CAAGGCGCGCCCCTATCT 62.242 66.667 44.47 24.50 33.97 1.98
578 580 2.523412 AAGGCGCGCCCCTATCTA 60.523 61.111 44.47 0.00 33.97 1.98
579 581 2.574955 AAGGCGCGCCCCTATCTAG 61.575 63.158 44.47 0.00 33.97 2.43
580 582 3.303928 GGCGCGCCCCTATCTAGT 61.304 66.667 39.89 0.00 0.00 2.57
581 583 2.049063 GCGCGCCCCTATCTAGTG 60.049 66.667 23.24 0.00 0.00 2.74
582 584 2.561956 GCGCGCCCCTATCTAGTGA 61.562 63.158 23.24 0.00 0.00 3.41
583 585 1.878656 GCGCGCCCCTATCTAGTGAT 61.879 60.000 23.24 0.00 36.74 3.06
584 586 0.171455 CGCGCCCCTATCTAGTGATC 59.829 60.000 0.00 0.00 34.32 2.92
585 587 1.257743 GCGCCCCTATCTAGTGATCA 58.742 55.000 0.00 0.00 34.32 2.92
586 588 1.827969 GCGCCCCTATCTAGTGATCAT 59.172 52.381 0.00 0.00 34.32 2.45
587 589 2.417924 GCGCCCCTATCTAGTGATCATG 60.418 54.545 0.00 0.00 34.32 3.07
588 590 3.092301 CGCCCCTATCTAGTGATCATGA 58.908 50.000 0.00 0.00 34.32 3.07
589 591 3.703556 CGCCCCTATCTAGTGATCATGAT 59.296 47.826 8.25 8.25 34.32 2.45
590 592 4.161189 CGCCCCTATCTAGTGATCATGATT 59.839 45.833 10.14 0.00 34.32 2.57
591 593 5.669477 GCCCCTATCTAGTGATCATGATTC 58.331 45.833 10.14 6.68 34.32 2.52
592 594 5.424895 GCCCCTATCTAGTGATCATGATTCT 59.575 44.000 10.14 13.41 34.32 2.40
593 595 6.609212 GCCCCTATCTAGTGATCATGATTCTA 59.391 42.308 10.14 13.79 34.32 2.10
594 596 7.417342 GCCCCTATCTAGTGATCATGATTCTAC 60.417 44.444 10.14 9.70 34.32 2.59
595 597 7.201776 CCCCTATCTAGTGATCATGATTCTACG 60.202 44.444 10.14 9.60 34.32 3.51
596 598 7.192913 CCTATCTAGTGATCATGATTCTACGC 58.807 42.308 10.14 3.65 34.32 4.42
597 599 6.832520 ATCTAGTGATCATGATTCTACGCT 57.167 37.500 10.14 11.02 0.00 5.07
598 600 7.929941 ATCTAGTGATCATGATTCTACGCTA 57.070 36.000 10.14 11.55 0.00 4.26
599 601 7.371126 TCTAGTGATCATGATTCTACGCTAG 57.629 40.000 23.86 23.86 38.77 3.42
600 602 6.937465 TCTAGTGATCATGATTCTACGCTAGT 59.063 38.462 26.21 10.24 38.64 2.57
601 603 6.398234 AGTGATCATGATTCTACGCTAGTT 57.602 37.500 10.14 0.00 0.00 2.24
602 604 6.212235 AGTGATCATGATTCTACGCTAGTTG 58.788 40.000 10.14 0.00 0.00 3.16
603 605 4.984785 TGATCATGATTCTACGCTAGTTGC 59.015 41.667 10.14 0.00 38.57 4.17
604 606 4.655762 TCATGATTCTACGCTAGTTGCT 57.344 40.909 0.00 0.00 40.11 3.91
605 607 4.611943 TCATGATTCTACGCTAGTTGCTC 58.388 43.478 0.00 0.00 40.11 4.26
606 608 3.438297 TGATTCTACGCTAGTTGCTCC 57.562 47.619 0.00 0.00 40.11 4.70
607 609 2.100916 TGATTCTACGCTAGTTGCTCCC 59.899 50.000 0.00 0.00 40.11 4.30
608 610 1.848652 TTCTACGCTAGTTGCTCCCT 58.151 50.000 0.00 0.00 40.11 4.20
609 611 1.390565 TCTACGCTAGTTGCTCCCTC 58.609 55.000 0.00 0.00 40.11 4.30
610 612 1.103803 CTACGCTAGTTGCTCCCTCA 58.896 55.000 0.00 0.00 40.11 3.86
611 613 1.683917 CTACGCTAGTTGCTCCCTCAT 59.316 52.381 0.00 0.00 40.11 2.90
612 614 0.461961 ACGCTAGTTGCTCCCTCATC 59.538 55.000 0.00 0.00 40.11 2.92
613 615 0.461548 CGCTAGTTGCTCCCTCATCA 59.538 55.000 0.00 0.00 40.11 3.07
614 616 1.069823 CGCTAGTTGCTCCCTCATCAT 59.930 52.381 0.00 0.00 40.11 2.45
615 617 2.492012 GCTAGTTGCTCCCTCATCATG 58.508 52.381 0.00 0.00 38.95 3.07
616 618 2.492012 CTAGTTGCTCCCTCATCATGC 58.508 52.381 0.00 0.00 0.00 4.06
617 619 0.622136 AGTTGCTCCCTCATCATGCA 59.378 50.000 0.00 0.00 0.00 3.96
618 620 1.214673 AGTTGCTCCCTCATCATGCAT 59.785 47.619 0.00 0.00 33.50 3.96
619 621 1.607628 GTTGCTCCCTCATCATGCATC 59.392 52.381 0.00 0.00 33.50 3.91
620 622 0.109913 TGCTCCCTCATCATGCATCC 59.890 55.000 0.00 0.00 0.00 3.51
621 623 0.109913 GCTCCCTCATCATGCATCCA 59.890 55.000 0.00 0.00 0.00 3.41
622 624 1.882780 GCTCCCTCATCATGCATCCAG 60.883 57.143 0.00 0.00 0.00 3.86
623 625 1.420514 CTCCCTCATCATGCATCCAGT 59.579 52.381 0.00 0.00 0.00 4.00
624 626 1.848388 TCCCTCATCATGCATCCAGTT 59.152 47.619 0.00 0.00 0.00 3.16
625 627 1.954382 CCCTCATCATGCATCCAGTTG 59.046 52.381 0.00 0.00 0.00 3.16
626 628 1.337071 CCTCATCATGCATCCAGTTGC 59.663 52.381 0.00 0.00 43.07 4.17
627 629 2.298610 CTCATCATGCATCCAGTTGCT 58.701 47.619 0.00 0.00 43.18 3.91
628 630 2.021457 TCATCATGCATCCAGTTGCTG 58.979 47.619 0.00 0.00 43.18 4.41
629 631 2.021457 CATCATGCATCCAGTTGCTGA 58.979 47.619 0.00 0.00 43.18 4.26
630 632 1.746470 TCATGCATCCAGTTGCTGAG 58.254 50.000 0.00 0.00 43.18 3.35
631 633 1.279846 TCATGCATCCAGTTGCTGAGA 59.720 47.619 0.00 0.00 43.18 3.27
632 634 1.671328 CATGCATCCAGTTGCTGAGAG 59.329 52.381 0.00 0.00 43.18 3.20
633 635 0.035725 TGCATCCAGTTGCTGAGAGG 60.036 55.000 2.66 0.00 43.18 3.69
634 636 1.375098 GCATCCAGTTGCTGAGAGGC 61.375 60.000 0.00 3.68 39.57 4.70
635 637 1.088340 CATCCAGTTGCTGAGAGGCG 61.088 60.000 0.00 0.00 32.44 5.52
636 638 2.866085 ATCCAGTTGCTGAGAGGCGC 62.866 60.000 0.00 0.00 32.44 6.53
637 639 2.047465 CAGTTGCTGAGAGGCGCT 60.047 61.111 7.64 0.00 32.44 5.92
638 640 1.216444 CAGTTGCTGAGAGGCGCTA 59.784 57.895 7.64 0.00 32.44 4.26
639 641 0.179089 CAGTTGCTGAGAGGCGCTAT 60.179 55.000 7.64 0.00 32.44 2.97
640 642 0.179089 AGTTGCTGAGAGGCGCTATG 60.179 55.000 7.64 0.00 34.52 2.23
641 643 1.144716 TTGCTGAGAGGCGCTATGG 59.855 57.895 7.64 0.00 34.52 2.74
642 644 2.664518 GCTGAGAGGCGCTATGGC 60.665 66.667 7.64 0.88 45.27 4.40
649 651 2.663188 GGCGCTATGGCTTCGAGG 60.663 66.667 7.64 0.00 40.72 4.63
650 652 2.663188 GCGCTATGGCTTCGAGGG 60.663 66.667 0.00 0.00 36.09 4.30
651 653 3.129300 CGCTATGGCTTCGAGGGA 58.871 61.111 0.00 0.00 36.09 4.20
652 654 1.006805 CGCTATGGCTTCGAGGGAG 60.007 63.158 0.00 0.00 36.09 4.30
653 655 1.369321 GCTATGGCTTCGAGGGAGG 59.631 63.158 0.00 0.00 35.22 4.30
654 656 1.115930 GCTATGGCTTCGAGGGAGGA 61.116 60.000 0.00 0.00 35.22 3.71
655 657 0.676736 CTATGGCTTCGAGGGAGGAC 59.323 60.000 0.00 0.00 0.00 3.85
656 658 0.759436 TATGGCTTCGAGGGAGGACC 60.759 60.000 0.00 0.00 40.67 4.46
657 659 2.683933 GGCTTCGAGGGAGGACCA 60.684 66.667 0.00 0.00 43.89 4.02
658 660 2.291043 GGCTTCGAGGGAGGACCAA 61.291 63.158 0.00 0.00 43.89 3.67
659 661 1.677552 GCTTCGAGGGAGGACCAAA 59.322 57.895 0.00 0.00 43.89 3.28
660 662 0.036306 GCTTCGAGGGAGGACCAAAA 59.964 55.000 0.00 0.00 43.89 2.44
661 663 1.544759 GCTTCGAGGGAGGACCAAAAA 60.545 52.381 0.00 0.00 43.89 1.94
662 664 2.152016 CTTCGAGGGAGGACCAAAAAC 58.848 52.381 0.00 0.00 43.89 2.43
663 665 1.133363 TCGAGGGAGGACCAAAAACA 58.867 50.000 0.00 0.00 43.89 2.83
664 666 1.491332 TCGAGGGAGGACCAAAAACAA 59.509 47.619 0.00 0.00 43.89 2.83
665 667 1.880027 CGAGGGAGGACCAAAAACAAG 59.120 52.381 0.00 0.00 43.89 3.16
666 668 1.613925 GAGGGAGGACCAAAAACAAGC 59.386 52.381 0.00 0.00 43.89 4.01
679 681 0.030638 AACAAGCGCCACACACAATC 59.969 50.000 2.29 0.00 0.00 2.67
689 691 1.814394 CACACACAATCCCCACAGATG 59.186 52.381 0.00 0.00 0.00 2.90
720 722 3.957535 GCATCCGCGAATGCCCAG 61.958 66.667 20.65 0.00 45.07 4.45
915 919 4.373116 GAAGAGGCCCGCGTCACA 62.373 66.667 4.92 0.00 33.73 3.58
1014 1018 2.029290 ACGACTAATGTTCCTCTGCGTT 60.029 45.455 0.00 0.00 0.00 4.84
1218 1234 1.645034 AGAATCAGCCGTCGATTGTG 58.355 50.000 0.00 0.00 33.26 3.33
1417 1436 1.170442 CAAATTCCGGCCGTAACCTT 58.830 50.000 26.12 9.12 0.00 3.50
1535 1554 1.145571 TTGGCCTACTTGGGTCTTGT 58.854 50.000 3.32 0.00 36.00 3.16
1540 1559 2.956333 GCCTACTTGGGTCTTGTTGTTT 59.044 45.455 0.00 0.00 36.00 2.83
1541 1560 3.383505 GCCTACTTGGGTCTTGTTGTTTT 59.616 43.478 0.00 0.00 36.00 2.43
1542 1561 4.142026 GCCTACTTGGGTCTTGTTGTTTTT 60.142 41.667 0.00 0.00 36.00 1.94
1543 1562 5.068067 GCCTACTTGGGTCTTGTTGTTTTTA 59.932 40.000 0.00 0.00 36.00 1.52
1588 1615 5.855740 TTTTTCGTGGGGTTTAGATTTGT 57.144 34.783 0.00 0.00 0.00 2.83
1624 1651 6.389906 GTGATTTTGATTTCGAGGTGGAAAT 58.610 36.000 0.10 0.10 46.40 2.17
1712 1741 5.893500 TGATTGTGGTAGAATTGGGGTTTA 58.106 37.500 0.00 0.00 0.00 2.01
1766 1795 8.789762 GGTTTACAGTAATGTGTTTATTGACCT 58.210 33.333 5.98 0.00 33.14 3.85
1838 1867 6.993902 TCTGGTGTTCCTTTATAGTTTCGTTT 59.006 34.615 0.00 0.00 34.23 3.60
1858 1887 5.173131 CGTTTTGTTTGTAGAATTGCAGTCC 59.827 40.000 0.00 0.00 0.00 3.85
1967 1996 8.119226 GGAATACATTCTAGCATATTGAATCGC 58.881 37.037 2.19 0.00 37.00 4.58
1981 2010 1.067821 GAATCGCTGGTGTCTCTAGGG 59.932 57.143 0.00 0.00 38.55 3.53
2036 2065 5.982890 AACAGTTGTTTGATTATGGAGGG 57.017 39.130 0.00 0.00 33.93 4.30
2107 2188 7.568349 ACAACATATCCATGACTGTATCAGTT 58.432 34.615 3.91 0.00 45.44 3.16
2128 2217 9.793259 TCAGTTTGATAGGTGTCTCTTAAATTT 57.207 29.630 0.00 0.00 0.00 1.82
2138 2227 9.461312 AGGTGTCTCTTAAATTTGTTATGCATA 57.539 29.630 1.16 1.16 0.00 3.14
2253 2358 4.574674 TTTGGGACAGTGATCTAGCAAT 57.425 40.909 0.00 0.00 42.39 3.56
2353 2458 4.959210 TGTGGAAATGAGAAGGTTTTGGAA 59.041 37.500 0.00 0.00 0.00 3.53
2361 2466 8.599624 AATGAGAAGGTTTTGGAATATCATGT 57.400 30.769 0.00 0.00 0.00 3.21
2461 2566 5.856156 TGATTCACAGGATTTGCAAAATGT 58.144 33.333 17.19 17.35 0.00 2.71
2471 2576 6.044682 GGATTTGCAAAATGTGGGAATAGAG 58.955 40.000 17.19 0.00 0.00 2.43
2808 2917 1.217001 CTAGCTGTTTGTGCGTCACA 58.783 50.000 8.32 8.32 43.02 3.58
2960 3072 8.986477 ATTGTCAATTTAACTTTAGGTCATGC 57.014 30.769 0.00 0.00 0.00 4.06
2961 3073 7.759489 TGTCAATTTAACTTTAGGTCATGCT 57.241 32.000 0.00 0.00 0.00 3.79
2962 3074 7.816640 TGTCAATTTAACTTTAGGTCATGCTC 58.183 34.615 0.00 0.00 0.00 4.26
2963 3075 7.094377 TGTCAATTTAACTTTAGGTCATGCTCC 60.094 37.037 0.00 0.00 0.00 4.70
2964 3076 6.377146 TCAATTTAACTTTAGGTCATGCTCCC 59.623 38.462 3.68 0.00 0.00 4.30
2965 3077 5.514500 TTTAACTTTAGGTCATGCTCCCT 57.486 39.130 4.21 4.21 34.74 4.20
2966 3078 3.636153 AACTTTAGGTCATGCTCCCTC 57.364 47.619 2.16 0.00 32.08 4.30
2967 3079 1.840635 ACTTTAGGTCATGCTCCCTCC 59.159 52.381 2.16 0.00 32.08 4.30
2968 3080 0.830648 TTTAGGTCATGCTCCCTCCG 59.169 55.000 2.16 0.00 32.08 4.63
2969 3081 0.325296 TTAGGTCATGCTCCCTCCGT 60.325 55.000 2.16 0.00 32.08 4.69
2970 3082 0.755698 TAGGTCATGCTCCCTCCGTC 60.756 60.000 2.16 0.00 32.08 4.79
2971 3083 2.501610 GTCATGCTCCCTCCGTCC 59.498 66.667 0.00 0.00 0.00 4.79
2972 3084 2.764128 TCATGCTCCCTCCGTCCC 60.764 66.667 0.00 0.00 0.00 4.46
2973 3085 3.083349 CATGCTCCCTCCGTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
2974 3086 2.285368 ATGCTCCCTCCGTCCCAA 60.285 61.111 0.00 0.00 0.00 4.12
2975 3087 1.923395 ATGCTCCCTCCGTCCCAAA 60.923 57.895 0.00 0.00 0.00 3.28
2976 3088 1.497309 ATGCTCCCTCCGTCCCAAAA 61.497 55.000 0.00 0.00 0.00 2.44
2977 3089 1.303282 GCTCCCTCCGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
2978 3090 0.323451 GCTCCCTCCGTCCCAAAATT 60.323 55.000 0.00 0.00 0.00 1.82
2979 3091 1.751437 CTCCCTCCGTCCCAAAATTC 58.249 55.000 0.00 0.00 0.00 2.17
2980 3092 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2981 3093 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2982 3094 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2983 3095 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2984 3096 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2985 3097 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2986 3098 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2987 3099 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2988 3100 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2989 3101 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2990 3102 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2991 3103 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2992 3104 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2993 3105 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2994 3106 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2995 3107 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2996 3108 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3004 3116 9.392259 TCTTGTCTTAGATTTGTCTAGATACGA 57.608 33.333 0.00 0.00 0.00 3.43
3007 3119 9.952188 TGTCTTAGATTTGTCTAGATACGAATG 57.048 33.333 0.00 0.00 34.30 2.67
3008 3120 9.953697 GTCTTAGATTTGTCTAGATACGAATGT 57.046 33.333 0.00 0.00 34.30 2.71
3040 3152 7.915293 ATTAAAACGTGACTTGATACATCCA 57.085 32.000 0.00 0.00 0.00 3.41
3041 3153 7.915293 TTAAAACGTGACTTGATACATCCAT 57.085 32.000 0.00 0.00 0.00 3.41
3042 3154 9.607988 ATTAAAACGTGACTTGATACATCCATA 57.392 29.630 0.00 0.00 0.00 2.74
3043 3155 9.607988 TTAAAACGTGACTTGATACATCCATAT 57.392 29.630 0.00 0.00 0.00 1.78
3044 3156 7.715265 AAACGTGACTTGATACATCCATATC 57.285 36.000 0.00 0.00 32.95 1.63
3045 3157 6.656632 ACGTGACTTGATACATCCATATCT 57.343 37.500 0.00 0.00 33.42 1.98
3046 3158 7.761038 ACGTGACTTGATACATCCATATCTA 57.239 36.000 0.00 0.00 33.42 1.98
3047 3159 7.821652 ACGTGACTTGATACATCCATATCTAG 58.178 38.462 0.00 0.00 39.14 2.43
3048 3160 7.665974 ACGTGACTTGATACATCCATATCTAGA 59.334 37.037 10.02 0.00 36.88 2.43
3049 3161 7.965655 CGTGACTTGATACATCCATATCTAGAC 59.034 40.741 0.00 5.82 36.88 2.59
3050 3162 8.797438 GTGACTTGATACATCCATATCTAGACA 58.203 37.037 0.00 7.78 36.88 3.41
3051 3163 9.367160 TGACTTGATACATCCATATCTAGACAA 57.633 33.333 0.00 0.00 36.75 3.18
3056 3168 9.325248 TGATACATCCATATCTAGACAAATCCA 57.675 33.333 0.00 0.00 33.42 3.41
3059 3171 8.267620 ACATCCATATCTAGACAAATCCAAGA 57.732 34.615 0.00 0.00 0.00 3.02
3060 3172 8.153550 ACATCCATATCTAGACAAATCCAAGAC 58.846 37.037 0.00 0.00 0.00 3.01
3061 3173 7.675161 TCCATATCTAGACAAATCCAAGACA 57.325 36.000 0.00 0.00 0.00 3.41
3062 3174 8.089625 TCCATATCTAGACAAATCCAAGACAA 57.910 34.615 0.00 0.00 0.00 3.18
3063 3175 8.206867 TCCATATCTAGACAAATCCAAGACAAG 58.793 37.037 0.00 0.00 0.00 3.16
3064 3176 8.206867 CCATATCTAGACAAATCCAAGACAAGA 58.793 37.037 0.00 0.00 0.00 3.02
3065 3177 9.605275 CATATCTAGACAAATCCAAGACAAGAA 57.395 33.333 0.00 0.00 0.00 2.52
3068 3180 8.924511 TCTAGACAAATCCAAGACAAGAATTT 57.075 30.769 0.00 0.00 0.00 1.82
3069 3181 9.354673 TCTAGACAAATCCAAGACAAGAATTTT 57.645 29.630 0.00 0.00 0.00 1.82
3070 3182 9.403110 CTAGACAAATCCAAGACAAGAATTTTG 57.597 33.333 0.00 0.00 0.00 2.44
3071 3183 7.212274 AGACAAATCCAAGACAAGAATTTTGG 58.788 34.615 0.00 0.00 41.09 3.28
3072 3184 6.290605 ACAAATCCAAGACAAGAATTTTGGG 58.709 36.000 4.84 0.00 40.33 4.12
3073 3185 6.099557 ACAAATCCAAGACAAGAATTTTGGGA 59.900 34.615 4.84 0.00 40.33 4.37
3074 3186 5.728637 ATCCAAGACAAGAATTTTGGGAC 57.271 39.130 4.84 0.00 40.33 4.46
3075 3187 3.568007 TCCAAGACAAGAATTTTGGGACG 59.432 43.478 4.84 0.00 40.33 4.79
3076 3188 3.305335 CCAAGACAAGAATTTTGGGACGG 60.305 47.826 0.00 0.00 37.11 4.79
3077 3189 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3078 3190 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3079 3191 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3080 3192 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3081 3193 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3082 3194 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3083 3195 0.323451 AATTTTGGGACGGAGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70
3221 3596 1.490490 TGGTTCAGTGAGAAGGCAGTT 59.510 47.619 0.00 0.00 36.78 3.16
3350 3725 0.526662 GTCTCAGTCGGGTTGTCGAT 59.473 55.000 0.00 0.00 41.40 3.59
3403 3778 1.755008 GGGCTGGAGCGACTAGTCT 60.755 63.158 20.34 2.62 43.26 3.24
3464 3861 2.181954 AGCTTGTTCTGCTCCTTCTG 57.818 50.000 0.00 0.00 35.67 3.02
3480 3877 1.074623 CTGCTCCTCCCCTGGATCT 60.075 63.158 0.00 0.00 35.30 2.75
3526 3953 1.452833 GCTGTGCTCCCTTGGATCC 60.453 63.158 4.20 4.20 0.00 3.36
3587 4031 5.932303 TCTTCTGCTGTTGTACCAACTATTC 59.068 40.000 8.41 0.00 0.00 1.75
3656 4100 1.140312 TCTTGGTTGGTGGAGAAGCT 58.860 50.000 0.00 0.00 0.00 3.74
3885 5263 5.551189 AGTATATACTACTCCCTCCGTTCCT 59.449 44.000 13.88 0.00 34.13 3.36
3886 5264 6.732862 AGTATATACTACTCCCTCCGTTCCTA 59.267 42.308 13.88 0.00 34.13 2.94
3895 5273 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3897 5275 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3964 5342 9.262358 GATGTATTTTAGAGTGTAGATTCACCC 57.738 37.037 0.00 0.00 38.91 4.61
3965 5343 8.141298 TGTATTTTAGAGTGTAGATTCACCCA 57.859 34.615 0.00 0.00 38.91 4.51
3966 5344 8.768397 TGTATTTTAGAGTGTAGATTCACCCAT 58.232 33.333 0.00 0.00 38.91 4.00
3967 5345 9.262358 GTATTTTAGAGTGTAGATTCACCCATC 57.738 37.037 0.00 0.00 38.91 3.51
3968 5346 7.496346 TTTTAGAGTGTAGATTCACCCATCT 57.504 36.000 0.00 0.00 38.91 2.90
3969 5347 7.496346 TTTAGAGTGTAGATTCACCCATCTT 57.504 36.000 0.00 0.00 38.91 2.40
3970 5348 5.350504 AGAGTGTAGATTCACCCATCTTG 57.649 43.478 0.00 0.00 38.91 3.02
3971 5349 3.873952 GAGTGTAGATTCACCCATCTTGC 59.126 47.826 0.00 0.00 38.91 4.01
3972 5350 3.521126 AGTGTAGATTCACCCATCTTGCT 59.479 43.478 0.00 0.00 38.91 3.91
3973 5351 3.873952 GTGTAGATTCACCCATCTTGCTC 59.126 47.826 0.00 0.00 35.08 4.26
3974 5352 2.725221 AGATTCACCCATCTTGCTCC 57.275 50.000 0.00 0.00 28.19 4.70
3975 5353 1.134280 AGATTCACCCATCTTGCTCCG 60.134 52.381 0.00 0.00 28.19 4.63
3976 5354 0.620556 ATTCACCCATCTTGCTCCGT 59.379 50.000 0.00 0.00 0.00 4.69
3977 5355 1.271856 TTCACCCATCTTGCTCCGTA 58.728 50.000 0.00 0.00 0.00 4.02
3978 5356 1.496060 TCACCCATCTTGCTCCGTAT 58.504 50.000 0.00 0.00 0.00 3.06
3979 5357 1.138859 TCACCCATCTTGCTCCGTATG 59.861 52.381 0.00 0.00 0.00 2.39
3980 5358 1.134401 CACCCATCTTGCTCCGTATGT 60.134 52.381 0.00 0.00 0.00 2.29
3981 5359 2.102420 CACCCATCTTGCTCCGTATGTA 59.898 50.000 0.00 0.00 0.00 2.29
3982 5360 2.365617 ACCCATCTTGCTCCGTATGTAG 59.634 50.000 0.00 0.00 0.00 2.74
3983 5361 2.365617 CCCATCTTGCTCCGTATGTAGT 59.634 50.000 0.00 0.00 0.00 2.73
3984 5362 3.553096 CCCATCTTGCTCCGTATGTAGTC 60.553 52.174 0.00 0.00 0.00 2.59
3985 5363 3.553096 CCATCTTGCTCCGTATGTAGTCC 60.553 52.174 0.00 0.00 0.00 3.85
3986 5364 2.730382 TCTTGCTCCGTATGTAGTCCA 58.270 47.619 0.00 0.00 0.00 4.02
3987 5365 3.296854 TCTTGCTCCGTATGTAGTCCAT 58.703 45.455 0.00 0.00 37.58 3.41
3988 5366 4.466827 TCTTGCTCCGTATGTAGTCCATA 58.533 43.478 0.00 0.00 34.86 2.74
3989 5367 5.077564 TCTTGCTCCGTATGTAGTCCATAT 58.922 41.667 0.00 0.00 38.29 1.78
3990 5368 5.538813 TCTTGCTCCGTATGTAGTCCATATT 59.461 40.000 0.00 0.00 38.29 1.28
3991 5369 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
3992 5370 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
3993 5371 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
4030 5408 5.011840 ACTTATATTTAGGAACGGAGGGAGC 59.988 44.000 0.00 0.00 0.00 4.70
4073 5618 5.130292 TGTAAGTTGAGTGCTACAGTACC 57.870 43.478 0.00 0.00 0.00 3.34
4074 5619 4.585581 TGTAAGTTGAGTGCTACAGTACCA 59.414 41.667 0.00 0.00 0.00 3.25
4075 5620 4.891992 AAGTTGAGTGCTACAGTACCAT 57.108 40.909 0.00 0.00 0.00 3.55
4076 5621 4.193826 AGTTGAGTGCTACAGTACCATG 57.806 45.455 0.00 0.00 0.00 3.66
4077 5622 3.578716 AGTTGAGTGCTACAGTACCATGT 59.421 43.478 0.00 0.00 37.19 3.21
4078 5623 3.592898 TGAGTGCTACAGTACCATGTG 57.407 47.619 0.00 0.00 34.56 3.21
4079 5624 2.897326 TGAGTGCTACAGTACCATGTGT 59.103 45.455 0.00 0.00 34.56 3.72
4080 5625 4.083565 TGAGTGCTACAGTACCATGTGTA 58.916 43.478 0.00 0.00 34.56 2.90
4081 5626 4.709886 TGAGTGCTACAGTACCATGTGTAT 59.290 41.667 0.00 0.00 34.56 2.29
4082 5627 5.186992 TGAGTGCTACAGTACCATGTGTATT 59.813 40.000 0.00 0.00 34.56 1.89
4083 5628 6.049955 AGTGCTACAGTACCATGTGTATTT 57.950 37.500 0.00 0.00 34.56 1.40
4084 5629 6.472887 AGTGCTACAGTACCATGTGTATTTT 58.527 36.000 0.00 0.00 34.56 1.82
4085 5630 6.371548 AGTGCTACAGTACCATGTGTATTTTG 59.628 38.462 0.00 0.00 34.56 2.44
4086 5631 5.645929 TGCTACAGTACCATGTGTATTTTGG 59.354 40.000 0.00 0.00 34.56 3.28
4087 5632 5.878116 GCTACAGTACCATGTGTATTTTGGA 59.122 40.000 0.00 0.00 34.56 3.53
4088 5633 6.037172 GCTACAGTACCATGTGTATTTTGGAG 59.963 42.308 0.00 2.73 34.56 3.86
4089 5634 5.876357 ACAGTACCATGTGTATTTTGGAGT 58.124 37.500 0.00 0.00 34.52 3.85
4090 5635 5.705441 ACAGTACCATGTGTATTTTGGAGTG 59.295 40.000 0.00 0.00 34.52 3.51
4091 5636 5.705441 CAGTACCATGTGTATTTTGGAGTGT 59.295 40.000 0.00 0.00 34.52 3.55
4092 5637 6.876789 CAGTACCATGTGTATTTTGGAGTGTA 59.123 38.462 0.00 0.00 34.52 2.90
4093 5638 7.064609 CAGTACCATGTGTATTTTGGAGTGTAG 59.935 40.741 0.00 0.00 34.52 2.74
4094 5639 6.121776 ACCATGTGTATTTTGGAGTGTAGA 57.878 37.500 0.00 0.00 34.52 2.59
4095 5640 6.721318 ACCATGTGTATTTTGGAGTGTAGAT 58.279 36.000 0.00 0.00 34.52 1.98
4096 5641 7.175104 ACCATGTGTATTTTGGAGTGTAGATT 58.825 34.615 0.00 0.00 34.52 2.40
4097 5642 7.336931 ACCATGTGTATTTTGGAGTGTAGATTC 59.663 37.037 0.00 0.00 34.52 2.52
4098 5643 7.336679 CCATGTGTATTTTGGAGTGTAGATTCA 59.663 37.037 0.00 0.00 31.94 2.57
4099 5644 7.667043 TGTGTATTTTGGAGTGTAGATTCAC 57.333 36.000 0.00 0.00 38.46 3.18
4100 5645 6.653320 TGTGTATTTTGGAGTGTAGATTCACC 59.347 38.462 0.00 0.00 38.91 4.02
4101 5646 6.093633 GTGTATTTTGGAGTGTAGATTCACCC 59.906 42.308 0.00 0.00 38.91 4.61
4102 5647 4.715534 TTTTGGAGTGTAGATTCACCCA 57.284 40.909 0.00 0.00 38.91 4.51
4103 5648 4.927267 TTTGGAGTGTAGATTCACCCAT 57.073 40.909 0.00 0.00 37.94 4.00
4104 5649 4.927267 TTGGAGTGTAGATTCACCCATT 57.073 40.909 0.00 0.00 37.94 3.16
4105 5650 4.927267 TGGAGTGTAGATTCACCCATTT 57.073 40.909 0.00 0.00 38.91 2.32
4106 5651 5.255397 TGGAGTGTAGATTCACCCATTTT 57.745 39.130 0.00 0.00 38.91 1.82
4107 5652 5.009631 TGGAGTGTAGATTCACCCATTTTG 58.990 41.667 0.00 0.00 38.91 2.44
4108 5653 4.142381 GGAGTGTAGATTCACCCATTTTGC 60.142 45.833 0.00 0.00 38.91 3.68
4109 5654 4.666512 AGTGTAGATTCACCCATTTTGCT 58.333 39.130 0.00 0.00 38.91 3.91
4110 5655 4.702131 AGTGTAGATTCACCCATTTTGCTC 59.298 41.667 0.00 0.00 38.91 4.26
4111 5656 4.016444 TGTAGATTCACCCATTTTGCTCC 58.984 43.478 0.00 0.00 0.00 4.70
4112 5657 2.094675 AGATTCACCCATTTTGCTCCG 58.905 47.619 0.00 0.00 0.00 4.63
4113 5658 1.818674 GATTCACCCATTTTGCTCCGT 59.181 47.619 0.00 0.00 0.00 4.69
4114 5659 2.570415 TTCACCCATTTTGCTCCGTA 57.430 45.000 0.00 0.00 0.00 4.02
4115 5660 2.799126 TCACCCATTTTGCTCCGTAT 57.201 45.000 0.00 0.00 0.00 3.06
4116 5661 2.364632 TCACCCATTTTGCTCCGTATG 58.635 47.619 0.00 0.00 0.00 2.39
4117 5662 2.091541 CACCCATTTTGCTCCGTATGT 58.908 47.619 0.00 0.00 0.00 2.29
4118 5663 3.055021 TCACCCATTTTGCTCCGTATGTA 60.055 43.478 0.00 0.00 0.00 2.29
4119 5664 3.312421 CACCCATTTTGCTCCGTATGTAG 59.688 47.826 0.00 0.00 0.00 2.74
4120 5665 3.054655 ACCCATTTTGCTCCGTATGTAGT 60.055 43.478 0.00 0.00 0.00 2.73
4121 5666 3.560068 CCCATTTTGCTCCGTATGTAGTC 59.440 47.826 0.00 0.00 0.00 2.59
4122 5667 3.560068 CCATTTTGCTCCGTATGTAGTCC 59.440 47.826 0.00 0.00 0.00 3.85
4123 5668 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4124 5669 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4125 5670 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4126 5671 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4127 5672 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4128 5673 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
4129 5674 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
4130 5675 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
4163 5708 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4164 5709 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4165 5710 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4166 5711 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4167 5712 5.011840 ACTTATATTTAGGAACGGAGGGAGC 59.988 44.000 0.00 0.00 0.00 4.70
4168 5713 1.580059 ATTTAGGAACGGAGGGAGCA 58.420 50.000 0.00 0.00 0.00 4.26
4169 5714 1.580059 TTTAGGAACGGAGGGAGCAT 58.420 50.000 0.00 0.00 0.00 3.79
4170 5715 0.830648 TTAGGAACGGAGGGAGCATG 59.169 55.000 0.00 0.00 0.00 4.06
4171 5716 0.325296 TAGGAACGGAGGGAGCATGT 60.325 55.000 0.00 0.00 0.00 3.21
4172 5717 0.325296 AGGAACGGAGGGAGCATGTA 60.325 55.000 0.00 0.00 0.00 2.29
4173 5718 0.759346 GGAACGGAGGGAGCATGTAT 59.241 55.000 0.00 0.00 0.00 2.29
4174 5719 1.141053 GGAACGGAGGGAGCATGTATT 59.859 52.381 0.00 0.00 0.00 1.89
4175 5720 2.367567 GGAACGGAGGGAGCATGTATTA 59.632 50.000 0.00 0.00 0.00 0.98
4176 5721 3.555168 GGAACGGAGGGAGCATGTATTAG 60.555 52.174 0.00 0.00 0.00 1.73
4177 5722 2.679082 ACGGAGGGAGCATGTATTAGT 58.321 47.619 0.00 0.00 0.00 2.24
4178 5723 3.840991 ACGGAGGGAGCATGTATTAGTA 58.159 45.455 0.00 0.00 0.00 1.82
4179 5724 3.827302 ACGGAGGGAGCATGTATTAGTAG 59.173 47.826 0.00 0.00 0.00 2.57
4180 5725 3.367498 CGGAGGGAGCATGTATTAGTAGC 60.367 52.174 0.00 0.00 0.00 3.58
4181 5726 3.835395 GGAGGGAGCATGTATTAGTAGCT 59.165 47.826 0.00 0.00 38.43 3.32
4182 5727 4.322349 GGAGGGAGCATGTATTAGTAGCTG 60.322 50.000 0.00 0.00 35.36 4.24
4183 5728 3.580458 AGGGAGCATGTATTAGTAGCTGG 59.420 47.826 0.00 0.00 35.36 4.85
4184 5729 3.307059 GGGAGCATGTATTAGTAGCTGGG 60.307 52.174 0.00 0.00 35.36 4.45
4185 5730 3.325135 GGAGCATGTATTAGTAGCTGGGT 59.675 47.826 0.00 0.00 35.36 4.51
4186 5731 4.527038 GGAGCATGTATTAGTAGCTGGGTA 59.473 45.833 0.00 0.00 35.36 3.69
4187 5732 5.470047 AGCATGTATTAGTAGCTGGGTAC 57.530 43.478 0.00 2.17 33.67 3.34
4188 5733 5.148502 AGCATGTATTAGTAGCTGGGTACT 58.851 41.667 15.25 15.25 37.09 2.73
4189 5734 5.011125 AGCATGTATTAGTAGCTGGGTACTG 59.989 44.000 18.87 5.95 34.91 2.74
4190 5735 5.221461 GCATGTATTAGTAGCTGGGTACTGT 60.221 44.000 18.87 11.64 34.91 3.55
4191 5736 6.015688 GCATGTATTAGTAGCTGGGTACTGTA 60.016 42.308 18.87 10.88 34.91 2.74
4192 5737 7.470981 GCATGTATTAGTAGCTGGGTACTGTAA 60.471 40.741 18.87 9.30 34.91 2.41
4193 5738 7.578310 TGTATTAGTAGCTGGGTACTGTAAG 57.422 40.000 18.87 0.00 42.29 2.34
4194 5739 6.548622 TGTATTAGTAGCTGGGTACTGTAAGG 59.451 42.308 18.87 0.00 39.30 2.69
4195 5740 3.469750 AGTAGCTGGGTACTGTAAGGT 57.530 47.619 11.03 0.00 39.30 3.50
4196 5741 3.097614 AGTAGCTGGGTACTGTAAGGTG 58.902 50.000 11.03 0.00 39.30 4.00
4197 5742 2.320681 AGCTGGGTACTGTAAGGTGA 57.679 50.000 0.00 0.00 39.30 4.02
4198 5743 2.180276 AGCTGGGTACTGTAAGGTGAG 58.820 52.381 0.00 0.00 39.30 3.51
4199 5744 1.900486 GCTGGGTACTGTAAGGTGAGT 59.100 52.381 0.00 0.00 39.30 3.41
4200 5745 2.353803 GCTGGGTACTGTAAGGTGAGTG 60.354 54.545 0.00 0.00 39.30 3.51
4201 5746 1.621814 TGGGTACTGTAAGGTGAGTGC 59.378 52.381 0.00 0.00 39.30 4.40
4202 5747 1.900486 GGGTACTGTAAGGTGAGTGCT 59.100 52.381 0.00 0.00 39.30 4.40
4203 5748 3.094572 GGGTACTGTAAGGTGAGTGCTA 58.905 50.000 0.00 0.00 39.30 3.49
4204 5749 3.119209 GGGTACTGTAAGGTGAGTGCTAC 60.119 52.174 0.00 0.00 39.30 3.58
4205 5750 3.508793 GGTACTGTAAGGTGAGTGCTACA 59.491 47.826 0.00 0.00 39.30 2.74
4206 5751 3.944055 ACTGTAAGGTGAGTGCTACAG 57.056 47.619 6.55 6.55 44.42 2.74
4207 5752 3.231818 ACTGTAAGGTGAGTGCTACAGT 58.768 45.455 7.70 7.70 46.00 3.55
4280 5825 0.468226 TGTCAACCTCGGCTTGACTT 59.532 50.000 21.07 0.00 45.28 3.01
4311 5856 2.146342 CTTTAGTGTCACTGTGCTGGG 58.854 52.381 16.03 0.00 0.00 4.45
4552 6100 5.818678 TTTACAACTACTGGTGGACTCAT 57.181 39.130 0.00 0.00 0.00 2.90
4571 6119 8.686334 GGACTCATGTTTGTATTTATTGTGGAT 58.314 33.333 0.00 0.00 0.00 3.41
4661 6209 7.496346 TGGATCCTGTACAGAAAATAACTCT 57.504 36.000 24.68 0.00 0.00 3.24
4906 6472 3.410628 TGATGACGGCCCTGGCAT 61.411 61.111 10.86 0.00 44.11 4.40
5346 6924 3.519107 TGAGGGCATATGTTCTCTTGTCA 59.481 43.478 20.24 6.04 0.00 3.58
5479 7057 9.005777 GGATGTTCAAAGTTGTACTAATTACCA 57.994 33.333 0.00 0.00 30.87 3.25
5629 7207 6.368213 CCATTTTCTTGGTACGACAACTTAC 58.632 40.000 0.00 0.00 31.74 2.34
6095 7673 5.048504 CGGTTTCAGTACTACTAGGTGTGAA 60.049 44.000 0.00 0.00 0.00 3.18
6168 7746 2.823154 CGGTATTTGGGGTCAATGTTGT 59.177 45.455 0.00 0.00 32.28 3.32
6308 7886 3.695022 CTACAGGACGGCGGTTCGG 62.695 68.421 13.24 0.00 0.00 4.30
6337 7915 0.246910 TTGTATGGCGCGGAGTGTTA 59.753 50.000 8.83 0.00 41.96 2.41
6527 8105 2.912624 GCATATTCAGCGCAGGCCC 61.913 63.158 11.47 0.00 41.24 5.80
6591 8169 2.203938 TCAAGAGAGGGCGGGGTT 60.204 61.111 0.00 0.00 0.00 4.11
6679 8258 1.602237 CTATGGACAGGGGTGCGTT 59.398 57.895 0.00 0.00 38.35 4.84
6904 8498 5.643664 TGCTAAAGCTTAGAAATGTGCATG 58.356 37.500 0.00 0.00 42.66 4.06
6972 8566 2.615447 GTCCATATACGTCCGTGTCTCA 59.385 50.000 1.98 0.00 0.00 3.27
7008 8602 2.485124 CCTTCTCAGGGCTGTGATGATC 60.485 54.545 0.00 0.00 36.36 2.92
7011 8605 0.977627 TCAGGGCTGTGATGATCGGT 60.978 55.000 0.00 0.00 0.00 4.69
7527 9261 0.526524 CTCTCGCAGTTCCCGACATC 60.527 60.000 0.00 0.00 0.00 3.06
7568 9302 6.149474 ACTGTTCCGAAGATTAGTCCAAAATG 59.851 38.462 0.00 0.00 0.00 2.32
7629 9363 4.338795 AGAAGGGGAGATAGACAACAGA 57.661 45.455 0.00 0.00 0.00 3.41
7748 9521 1.126948 TCCACCATGTCACAGCCAGA 61.127 55.000 0.00 0.00 0.00 3.86
8069 9843 9.814899 CTAGAAGAGAACATCATCTATTTGTGT 57.185 33.333 0.00 0.00 37.54 3.72
8071 9845 7.551974 AGAAGAGAACATCATCTATTTGTGTGG 59.448 37.037 0.00 0.00 34.25 4.17
8124 9963 3.181464 GGGATTACTCTTGTGGCCTAGAC 60.181 52.174 3.32 0.00 0.00 2.59
8300 10174 4.832266 TGATATGGCAGTTCTTTTTGGTGT 59.168 37.500 0.00 0.00 0.00 4.16
8302 10176 2.733956 TGGCAGTTCTTTTTGGTGTCT 58.266 42.857 0.00 0.00 0.00 3.41
8370 10256 6.159293 TGCTAGATTCCATATCTAGTTTGCG 58.841 40.000 18.16 0.16 45.72 4.85
8401 10287 3.062369 CACAGCACAACAACCACAAATTG 59.938 43.478 0.00 0.00 0.00 2.32
8701 10754 2.667536 AGCAGTGCAGTGAAGCCG 60.668 61.111 25.76 0.00 0.00 5.52
9138 11418 5.056480 GTGAGGCTACATGTGCATTATGTA 58.944 41.667 19.41 19.41 39.36 2.29
9156 11439 7.946655 TTATGTAGCGATTTAGTTCATGAGG 57.053 36.000 0.00 0.00 0.00 3.86
9226 11510 6.436261 GCATGTCAATACATTCTGAAGGATG 58.564 40.000 9.26 5.22 44.07 3.51
9229 11513 6.351711 TGTCAATACATTCTGAAGGATGGAG 58.648 40.000 9.26 0.00 0.00 3.86
9241 11525 1.642762 AGGATGGAGCATTGGTTCCTT 59.357 47.619 2.41 0.00 44.18 3.36
9246 11530 2.825532 TGGAGCATTGGTTCCTTTTAGC 59.174 45.455 0.00 0.00 44.18 3.09
9347 11631 7.545362 ACATTTTTCGAAGATACTGGATCTG 57.455 36.000 2.46 0.00 44.68 2.90
9372 11656 7.500227 TGCATTTCAAAGATAGGAATAGACCTG 59.500 37.037 0.00 0.00 40.81 4.00
9373 11657 7.500559 GCATTTCAAAGATAGGAATAGACCTGT 59.499 37.037 0.00 0.00 40.81 4.00
9374 11658 9.401058 CATTTCAAAGATAGGAATAGACCTGTT 57.599 33.333 0.00 0.00 40.81 3.16
9388 11672 5.223449 AGACCTGTTTAAGAATTCGTCCA 57.777 39.130 0.00 0.00 0.00 4.02
9395 11679 7.753580 CCTGTTTAAGAATTCGTCCAATTAACC 59.246 37.037 0.00 0.00 34.60 2.85
9399 11683 6.894339 AAGAATTCGTCCAATTAACCAGTT 57.106 33.333 0.00 0.00 34.60 3.16
9402 11686 7.813645 AGAATTCGTCCAATTAACCAGTTAAC 58.186 34.615 5.16 0.00 37.80 2.01
9406 11690 7.571080 TCGTCCAATTAACCAGTTAACTTTT 57.429 32.000 5.07 4.98 37.80 2.27
9407 11691 7.998580 TCGTCCAATTAACCAGTTAACTTTTT 58.001 30.769 5.07 4.61 37.80 1.94
9429 11713 8.455903 TTTTTGAGCAATCTCTATTCATAGGG 57.544 34.615 0.00 0.00 40.03 3.53
9433 11717 6.107901 AGCAATCTCTATTCATAGGGTCAC 57.892 41.667 0.00 0.00 32.61 3.67
9438 11722 6.019656 TCTCTATTCATAGGGTCACTGAGT 57.980 41.667 0.00 0.00 32.61 3.41
9461 11745 8.691661 AGTAGCCGATAAACCAATTAATCATT 57.308 30.769 0.00 0.00 0.00 2.57
9523 11807 1.134788 ACTCGCTAGCCAACCATGTAC 60.135 52.381 9.66 0.00 0.00 2.90
9524 11808 0.177141 TCGCTAGCCAACCATGTACC 59.823 55.000 9.66 0.00 0.00 3.34
9528 11812 2.484947 GCTAGCCAACCATGTACCTACC 60.485 54.545 2.29 0.00 0.00 3.18
9541 11894 7.147776 ACCATGTACCTACCAGTTAATGACTAC 60.148 40.741 0.00 0.00 36.65 2.73
9576 11929 6.664428 TTTGCCAATTAGCCTATTAATCCC 57.336 37.500 0.00 0.00 0.00 3.85
9583 11936 8.122481 CCAATTAGCCTATTAATCCCCCTAAAT 58.878 37.037 0.00 0.00 0.00 1.40
9587 11940 5.795870 AGCCTATTAATCCCCCTAAATGCTA 59.204 40.000 0.00 0.00 0.00 3.49
9594 11947 3.403322 TCCCCCTAAATGCTATCCAACT 58.597 45.455 0.00 0.00 0.00 3.16
9604 11957 7.559590 AAATGCTATCCAACTGATTAGTCAC 57.440 36.000 0.00 0.00 35.69 3.67
9619 11972 8.196802 TGATTAGTCACCAGTTAATGATTTCG 57.803 34.615 0.00 0.00 0.00 3.46
9753 12116 1.537990 GCGGTGTTTGTTGAAATGCCT 60.538 47.619 0.00 0.00 0.00 4.75
9755 12118 2.481104 CGGTGTTTGTTGAAATGCCTGT 60.481 45.455 0.00 0.00 0.00 4.00
9758 12121 4.370917 GTGTTTGTTGAAATGCCTGTGAT 58.629 39.130 0.00 0.00 0.00 3.06
9771 12134 6.932356 ATGCCTGTGATTACAAATAGTCAG 57.068 37.500 0.00 0.00 36.14 3.51
9813 12176 1.605710 CACATTGCAGGCTATGGCTAC 59.394 52.381 17.48 0.00 36.44 3.58
9819 12182 3.364549 TGCAGGCTATGGCTACAAAAAT 58.635 40.909 0.00 0.00 36.44 1.82
9821 12184 3.243535 GCAGGCTATGGCTACAAAAATCC 60.244 47.826 0.00 0.00 36.44 3.01
9823 12186 3.954258 AGGCTATGGCTACAAAAATCCAC 59.046 43.478 0.00 0.00 36.44 4.02
9836 12199 9.981114 CTACAAAAATCCACCACTTTTCTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
9837 12200 8.887036 ACAAAAATCCACCACTTTTCTTAATC 57.113 30.769 0.00 0.00 0.00 1.75
9838 12201 8.704668 ACAAAAATCCACCACTTTTCTTAATCT 58.295 29.630 0.00 0.00 0.00 2.40
9842 12205 9.981460 AAATCCACCACTTTTCTTAATCTATCT 57.019 29.630 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 7.011482 CCAATAAGACAAACTAGACCATACTGC 59.989 40.741 0.00 0.00 0.00 4.40
92 93 0.035056 GCCCTGACAGTGCTACCAAT 60.035 55.000 2.29 0.00 0.00 3.16
97 98 0.618680 ATGAGGCCCTGACAGTGCTA 60.619 55.000 9.85 0.00 0.00 3.49
169 170 1.302285 CAGGCCCTGTTGCAGAGAT 59.698 57.895 1.39 0.00 32.44 2.75
301 302 5.587289 GAGCGAAAGTTCTCTCATGATACT 58.413 41.667 0.00 0.00 38.55 2.12
333 334 2.554032 CAGAATCTGTTTGAAACCGCCT 59.446 45.455 5.50 0.00 0.00 5.52
365 366 3.730059 ACTACTATCTCATGGAGGGTCCT 59.270 47.826 0.00 0.00 37.46 3.85
392 393 3.915575 GCCTGAAGCACCCTGATG 58.084 61.111 0.00 0.00 42.97 3.07
422 423 4.625607 AGGAGGTAAACAGAAGAACAGG 57.374 45.455 0.00 0.00 0.00 4.00
451 453 1.837439 AGTGATAAAGGCGGTGATCCA 59.163 47.619 0.00 0.00 0.00 3.41
466 468 2.575279 AGGGAGCAGATGACAAAGTGAT 59.425 45.455 0.00 0.00 0.00 3.06
534 536 0.827368 AAACGGCAGGCAAAAAGGAA 59.173 45.000 0.00 0.00 0.00 3.36
535 537 0.103937 CAAACGGCAGGCAAAAAGGA 59.896 50.000 0.00 0.00 0.00 3.36
536 538 0.879839 CCAAACGGCAGGCAAAAAGG 60.880 55.000 0.00 0.00 0.00 3.11
537 539 2.603915 CCAAACGGCAGGCAAAAAG 58.396 52.632 0.00 0.00 0.00 2.27
538 540 4.844420 CCAAACGGCAGGCAAAAA 57.156 50.000 0.00 0.00 0.00 1.94
548 550 2.644992 GCCTTGTCTGCCAAACGG 59.355 61.111 0.00 0.00 31.20 4.44
549 551 2.252260 CGCCTTGTCTGCCAAACG 59.748 61.111 0.00 0.00 31.20 3.60
550 552 2.050077 GCGCCTTGTCTGCCAAAC 60.050 61.111 0.00 0.00 31.20 2.93
551 553 3.659092 CGCGCCTTGTCTGCCAAA 61.659 61.111 0.00 0.00 31.20 3.28
558 560 4.547367 ATAGGGGCGCGCCTTGTC 62.547 66.667 45.24 30.25 36.10 3.18
559 561 4.547367 GATAGGGGCGCGCCTTGT 62.547 66.667 45.24 34.13 36.10 3.16
560 562 2.771763 CTAGATAGGGGCGCGCCTTG 62.772 65.000 45.24 26.79 36.10 3.61
561 563 2.523412 TAGATAGGGGCGCGCCTT 60.523 61.111 45.24 34.79 36.10 4.35
562 564 2.992114 CTAGATAGGGGCGCGCCT 60.992 66.667 45.23 42.44 36.10 5.52
563 565 3.303928 ACTAGATAGGGGCGCGCC 61.304 66.667 41.63 41.63 0.00 6.53
564 566 1.878656 ATCACTAGATAGGGGCGCGC 61.879 60.000 25.94 25.94 31.14 6.86
565 567 0.171455 GATCACTAGATAGGGGCGCG 59.829 60.000 0.00 0.00 33.72 6.86
566 568 1.257743 TGATCACTAGATAGGGGCGC 58.742 55.000 0.00 0.00 33.72 6.53
567 569 3.092301 TCATGATCACTAGATAGGGGCG 58.908 50.000 0.00 0.00 33.72 6.13
568 570 5.424895 AGAATCATGATCACTAGATAGGGGC 59.575 44.000 9.06 0.00 33.72 5.80
569 571 7.201776 CGTAGAATCATGATCACTAGATAGGGG 60.202 44.444 9.06 0.00 33.72 4.79
570 572 7.680827 GCGTAGAATCATGATCACTAGATAGGG 60.681 44.444 9.06 3.76 33.72 3.53
571 573 7.066887 AGCGTAGAATCATGATCACTAGATAGG 59.933 40.741 9.06 4.28 33.72 2.57
572 574 7.984391 AGCGTAGAATCATGATCACTAGATAG 58.016 38.462 9.06 8.63 33.72 2.08
573 575 7.929941 AGCGTAGAATCATGATCACTAGATA 57.070 36.000 9.06 0.00 33.72 1.98
574 576 6.832520 AGCGTAGAATCATGATCACTAGAT 57.167 37.500 9.06 0.00 37.13 1.98
575 577 6.937465 ACTAGCGTAGAATCATGATCACTAGA 59.063 38.462 21.15 6.71 0.00 2.43
576 578 7.139896 ACTAGCGTAGAATCATGATCACTAG 57.860 40.000 9.06 14.32 0.00 2.57
577 579 7.363431 CAACTAGCGTAGAATCATGATCACTA 58.637 38.462 9.06 12.57 0.00 2.74
578 580 6.212235 CAACTAGCGTAGAATCATGATCACT 58.788 40.000 9.06 13.52 0.00 3.41
579 581 5.107683 GCAACTAGCGTAGAATCATGATCAC 60.108 44.000 9.06 6.70 0.00 3.06
580 582 4.984785 GCAACTAGCGTAGAATCATGATCA 59.015 41.667 9.06 0.00 0.00 2.92
581 583 5.508124 GCAACTAGCGTAGAATCATGATC 57.492 43.478 9.06 2.96 0.00 2.92
595 597 2.492012 CATGATGAGGGAGCAACTAGC 58.508 52.381 0.00 0.00 46.19 3.42
596 598 2.158856 TGCATGATGAGGGAGCAACTAG 60.159 50.000 0.00 0.00 31.42 2.57
597 599 1.839354 TGCATGATGAGGGAGCAACTA 59.161 47.619 0.00 0.00 31.42 2.24
598 600 0.622136 TGCATGATGAGGGAGCAACT 59.378 50.000 0.00 0.00 31.42 3.16
599 601 1.607628 GATGCATGATGAGGGAGCAAC 59.392 52.381 2.46 0.00 38.85 4.17
600 602 1.478105 GGATGCATGATGAGGGAGCAA 60.478 52.381 2.46 0.00 38.85 3.91
601 603 0.109913 GGATGCATGATGAGGGAGCA 59.890 55.000 2.46 0.00 39.79 4.26
602 604 0.109913 TGGATGCATGATGAGGGAGC 59.890 55.000 2.46 0.00 0.00 4.70
603 605 1.420514 ACTGGATGCATGATGAGGGAG 59.579 52.381 2.46 0.00 0.00 4.30
604 606 1.514983 ACTGGATGCATGATGAGGGA 58.485 50.000 2.46 0.00 0.00 4.20
605 607 1.954382 CAACTGGATGCATGATGAGGG 59.046 52.381 2.46 0.00 0.00 4.30
606 608 1.337071 GCAACTGGATGCATGATGAGG 59.663 52.381 2.46 0.00 45.70 3.86
607 609 2.776312 GCAACTGGATGCATGATGAG 57.224 50.000 2.46 0.00 45.70 2.90
615 617 1.375098 GCCTCTCAGCAACTGGATGC 61.375 60.000 0.07 0.07 46.78 3.91
616 618 1.088340 CGCCTCTCAGCAACTGGATG 61.088 60.000 0.00 0.00 31.51 3.51
617 619 1.220206 CGCCTCTCAGCAACTGGAT 59.780 57.895 0.00 0.00 31.51 3.41
618 620 2.659016 CGCCTCTCAGCAACTGGA 59.341 61.111 0.00 0.00 31.51 3.86
619 621 2.230994 TAGCGCCTCTCAGCAACTGG 62.231 60.000 2.29 0.00 35.48 4.00
620 622 0.179089 ATAGCGCCTCTCAGCAACTG 60.179 55.000 2.29 0.00 35.48 3.16
621 623 0.179089 CATAGCGCCTCTCAGCAACT 60.179 55.000 2.29 0.00 35.48 3.16
622 624 1.156645 CCATAGCGCCTCTCAGCAAC 61.157 60.000 2.29 0.00 35.48 4.17
623 625 1.144716 CCATAGCGCCTCTCAGCAA 59.855 57.895 2.29 0.00 35.48 3.91
624 626 2.817424 CCATAGCGCCTCTCAGCA 59.183 61.111 2.29 0.00 35.48 4.41
625 627 2.657102 AAGCCATAGCGCCTCTCAGC 62.657 60.000 2.29 0.00 46.67 4.26
626 628 0.599728 GAAGCCATAGCGCCTCTCAG 60.600 60.000 2.29 0.00 46.67 3.35
627 629 1.443407 GAAGCCATAGCGCCTCTCA 59.557 57.895 2.29 0.00 46.67 3.27
628 630 1.663074 CGAAGCCATAGCGCCTCTC 60.663 63.158 2.29 0.00 46.67 3.20
629 631 2.081425 CTCGAAGCCATAGCGCCTCT 62.081 60.000 2.29 0.00 46.67 3.69
630 632 1.663074 CTCGAAGCCATAGCGCCTC 60.663 63.158 2.29 0.00 46.67 4.70
631 633 2.419198 CTCGAAGCCATAGCGCCT 59.581 61.111 2.29 0.00 46.67 5.52
632 634 2.663188 CCTCGAAGCCATAGCGCC 60.663 66.667 2.29 0.00 46.67 6.53
633 635 2.663188 CCCTCGAAGCCATAGCGC 60.663 66.667 0.00 0.00 46.67 5.92
634 636 1.006805 CTCCCTCGAAGCCATAGCG 60.007 63.158 0.00 0.00 46.67 4.26
635 637 1.115930 TCCTCCCTCGAAGCCATAGC 61.116 60.000 0.00 0.00 40.32 2.97
636 638 0.676736 GTCCTCCCTCGAAGCCATAG 59.323 60.000 0.00 0.00 0.00 2.23
637 639 0.759436 GGTCCTCCCTCGAAGCCATA 60.759 60.000 0.00 0.00 0.00 2.74
638 640 2.066999 GGTCCTCCCTCGAAGCCAT 61.067 63.158 0.00 0.00 0.00 4.40
639 641 2.683933 GGTCCTCCCTCGAAGCCA 60.684 66.667 0.00 0.00 0.00 4.75
640 642 1.838073 TTTGGTCCTCCCTCGAAGCC 61.838 60.000 0.00 0.00 0.00 4.35
641 643 0.036306 TTTTGGTCCTCCCTCGAAGC 59.964 55.000 0.00 0.00 0.00 3.86
642 644 2.152016 GTTTTTGGTCCTCCCTCGAAG 58.848 52.381 0.00 0.00 0.00 3.79
643 645 1.491332 TGTTTTTGGTCCTCCCTCGAA 59.509 47.619 0.00 0.00 0.00 3.71
644 646 1.133363 TGTTTTTGGTCCTCCCTCGA 58.867 50.000 0.00 0.00 0.00 4.04
645 647 1.880027 CTTGTTTTTGGTCCTCCCTCG 59.120 52.381 0.00 0.00 0.00 4.63
646 648 1.613925 GCTTGTTTTTGGTCCTCCCTC 59.386 52.381 0.00 0.00 0.00 4.30
647 649 1.704641 GCTTGTTTTTGGTCCTCCCT 58.295 50.000 0.00 0.00 0.00 4.20
648 650 0.313987 CGCTTGTTTTTGGTCCTCCC 59.686 55.000 0.00 0.00 0.00 4.30
649 651 0.318699 GCGCTTGTTTTTGGTCCTCC 60.319 55.000 0.00 0.00 0.00 4.30
650 652 0.318699 GGCGCTTGTTTTTGGTCCTC 60.319 55.000 7.64 0.00 0.00 3.71
651 653 1.040339 TGGCGCTTGTTTTTGGTCCT 61.040 50.000 7.64 0.00 0.00 3.85
652 654 0.874175 GTGGCGCTTGTTTTTGGTCC 60.874 55.000 7.64 0.00 0.00 4.46
653 655 0.179124 TGTGGCGCTTGTTTTTGGTC 60.179 50.000 7.64 0.00 0.00 4.02
654 656 0.459411 GTGTGGCGCTTGTTTTTGGT 60.459 50.000 7.64 0.00 0.00 3.67
655 657 0.459237 TGTGTGGCGCTTGTTTTTGG 60.459 50.000 7.64 0.00 0.00 3.28
656 658 0.644843 GTGTGTGGCGCTTGTTTTTG 59.355 50.000 7.64 0.00 0.00 2.44
657 659 0.244994 TGTGTGTGGCGCTTGTTTTT 59.755 45.000 7.64 0.00 0.00 1.94
658 660 0.244994 TTGTGTGTGGCGCTTGTTTT 59.755 45.000 7.64 0.00 0.00 2.43
659 661 0.459489 ATTGTGTGTGGCGCTTGTTT 59.541 45.000 7.64 0.00 0.00 2.83
660 662 0.030638 GATTGTGTGTGGCGCTTGTT 59.969 50.000 7.64 0.00 0.00 2.83
661 663 1.654220 GATTGTGTGTGGCGCTTGT 59.346 52.632 7.64 0.00 0.00 3.16
662 664 1.081242 GGATTGTGTGTGGCGCTTG 60.081 57.895 7.64 0.00 0.00 4.01
663 665 2.268076 GGGATTGTGTGTGGCGCTT 61.268 57.895 7.64 0.00 0.00 4.68
664 666 2.672996 GGGATTGTGTGTGGCGCT 60.673 61.111 7.64 0.00 0.00 5.92
665 667 3.747976 GGGGATTGTGTGTGGCGC 61.748 66.667 0.00 0.00 0.00 6.53
666 668 2.282110 TGGGGATTGTGTGTGGCG 60.282 61.111 0.00 0.00 0.00 5.69
679 681 2.124983 CGGTGAGCATCTGTGGGG 60.125 66.667 0.00 0.00 34.92 4.96
707 709 2.793946 CTTTCTGGGCATTCGCGG 59.206 61.111 6.13 0.00 39.92 6.46
720 722 2.279937 CTAACTCCGCGTGCGCTTTC 62.280 60.000 9.73 0.00 39.32 2.62
1060 1064 4.521062 AGCCGAGGAGATGTGCGC 62.521 66.667 0.00 0.00 0.00 6.09
1097 1107 4.475135 GACCAGAAGCGGGGAGGC 62.475 72.222 0.00 0.00 0.00 4.70
1150 1166 3.499737 GGCGTCCATGGCGAAGTG 61.500 66.667 26.00 6.56 0.00 3.16
1445 1464 0.806102 AACATCGGATCGCACGGAAG 60.806 55.000 0.00 0.00 0.00 3.46
1588 1615 3.153130 TCAAAATCACGCCTCAAATCCA 58.847 40.909 0.00 0.00 0.00 3.41
1684 1713 5.068198 CCCCAATTCTACCACAATCAATCTG 59.932 44.000 0.00 0.00 0.00 2.90
1712 1741 1.064758 TGTTTGAGTCAAGTGCCCAGT 60.065 47.619 5.56 0.00 0.00 4.00
1766 1795 7.768120 AGGCACACAGAAAAATAAACAAAATCA 59.232 29.630 0.00 0.00 0.00 2.57
1838 1867 3.880490 ACGGACTGCAATTCTACAAACAA 59.120 39.130 0.00 0.00 0.00 2.83
1858 1887 3.851403 GGCAAACAACATATACAAGCACG 59.149 43.478 0.00 0.00 0.00 5.34
1967 1996 0.811915 CGACACCCTAGAGACACCAG 59.188 60.000 0.00 0.00 0.00 4.00
1981 2010 5.043903 AGTACATCAGCAATATGTCGACAC 58.956 41.667 22.71 7.78 38.49 3.67
2036 2065 2.159627 CCAACAATTCTACACGCAGACC 59.840 50.000 0.00 0.00 0.00 3.85
2128 2217 5.235616 GCTTACCGCTAGTTTATGCATAACA 59.764 40.000 18.70 7.78 35.14 2.41
2253 2358 1.526686 CTGCCACAGGTGTCTTGCA 60.527 57.895 0.00 0.36 0.00 4.08
2413 2518 2.158475 AGGCCTGAAGTTTGAACATGGA 60.158 45.455 3.11 0.00 0.00 3.41
2461 2566 6.555463 ATTCCTACGTTTTCTCTATTCCCA 57.445 37.500 0.00 0.00 0.00 4.37
2471 2576 4.501071 TGCCACTCTATTCCTACGTTTTC 58.499 43.478 0.00 0.00 0.00 2.29
2602 2707 8.433599 TCATACGATTGGAAACCATAGGATTTA 58.566 33.333 0.00 0.00 31.53 1.40
2959 3071 0.323451 AATTTTGGGACGGAGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70
2960 3072 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2961 3073 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2962 3074 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2963 3075 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2964 3076 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2965 3077 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2966 3078 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2967 3079 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2968 3080 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2969 3081 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2970 3082 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2978 3090 9.392259 TCGTATCTAGACAAATCTAAGACAAGA 57.608 33.333 0.00 0.00 36.98 3.02
2981 3093 9.952188 CATTCGTATCTAGACAAATCTAAGACA 57.048 33.333 0.00 0.00 36.98 3.41
2982 3094 9.953697 ACATTCGTATCTAGACAAATCTAAGAC 57.046 33.333 0.00 0.00 36.98 3.01
3014 3126 9.607988 TGGATGTATCAAGTCACGTTTTAATAT 57.392 29.630 0.00 0.00 0.00 1.28
3015 3127 9.607988 ATGGATGTATCAAGTCACGTTTTAATA 57.392 29.630 0.00 0.00 0.00 0.98
3016 3128 7.915293 TGGATGTATCAAGTCACGTTTTAAT 57.085 32.000 0.00 0.00 0.00 1.40
3017 3129 7.915293 ATGGATGTATCAAGTCACGTTTTAA 57.085 32.000 0.00 0.00 0.00 1.52
3018 3130 9.256477 GATATGGATGTATCAAGTCACGTTTTA 57.744 33.333 0.00 0.00 32.52 1.52
3019 3131 7.987458 AGATATGGATGTATCAAGTCACGTTTT 59.013 33.333 0.00 0.00 34.27 2.43
3020 3132 7.500992 AGATATGGATGTATCAAGTCACGTTT 58.499 34.615 0.00 0.00 34.27 3.60
3021 3133 7.055667 AGATATGGATGTATCAAGTCACGTT 57.944 36.000 0.00 0.00 34.27 3.99
3022 3134 6.656632 AGATATGGATGTATCAAGTCACGT 57.343 37.500 0.00 0.00 34.27 4.49
3023 3135 7.965655 GTCTAGATATGGATGTATCAAGTCACG 59.034 40.741 0.00 0.00 34.27 4.35
3024 3136 8.797438 TGTCTAGATATGGATGTATCAAGTCAC 58.203 37.037 0.00 0.00 34.27 3.67
3025 3137 8.940397 TGTCTAGATATGGATGTATCAAGTCA 57.060 34.615 0.00 0.00 34.27 3.41
3030 3142 9.325248 TGGATTTGTCTAGATATGGATGTATCA 57.675 33.333 0.00 0.00 34.27 2.15
3033 3145 9.379770 TCTTGGATTTGTCTAGATATGGATGTA 57.620 33.333 0.00 0.00 0.00 2.29
3034 3146 8.153550 GTCTTGGATTTGTCTAGATATGGATGT 58.846 37.037 0.00 0.00 0.00 3.06
3035 3147 8.152898 TGTCTTGGATTTGTCTAGATATGGATG 58.847 37.037 0.00 0.00 0.00 3.51
3036 3148 8.267620 TGTCTTGGATTTGTCTAGATATGGAT 57.732 34.615 0.00 0.00 0.00 3.41
3037 3149 7.675161 TGTCTTGGATTTGTCTAGATATGGA 57.325 36.000 0.00 0.00 0.00 3.41
3038 3150 8.206867 TCTTGTCTTGGATTTGTCTAGATATGG 58.793 37.037 0.00 0.00 0.00 2.74
3039 3151 9.605275 TTCTTGTCTTGGATTTGTCTAGATATG 57.395 33.333 0.00 0.00 0.00 1.78
3042 3154 9.525826 AAATTCTTGTCTTGGATTTGTCTAGAT 57.474 29.630 0.00 0.00 0.00 1.98
3043 3155 8.924511 AAATTCTTGTCTTGGATTTGTCTAGA 57.075 30.769 0.00 0.00 0.00 2.43
3044 3156 9.403110 CAAAATTCTTGTCTTGGATTTGTCTAG 57.597 33.333 0.00 0.00 0.00 2.43
3045 3157 8.359642 CCAAAATTCTTGTCTTGGATTTGTCTA 58.640 33.333 0.00 0.00 40.72 2.59
3046 3158 7.212274 CCAAAATTCTTGTCTTGGATTTGTCT 58.788 34.615 0.00 0.00 40.72 3.41
3047 3159 6.424812 CCCAAAATTCTTGTCTTGGATTTGTC 59.575 38.462 5.99 0.00 40.72 3.18
3048 3160 6.099557 TCCCAAAATTCTTGTCTTGGATTTGT 59.900 34.615 5.99 0.00 40.72 2.83
3049 3161 6.424812 GTCCCAAAATTCTTGTCTTGGATTTG 59.575 38.462 5.99 0.00 40.72 2.32
3050 3162 6.524734 GTCCCAAAATTCTTGTCTTGGATTT 58.475 36.000 5.99 0.00 40.72 2.17
3051 3163 5.278957 CGTCCCAAAATTCTTGTCTTGGATT 60.279 40.000 5.99 0.00 40.72 3.01
3052 3164 4.218417 CGTCCCAAAATTCTTGTCTTGGAT 59.782 41.667 5.99 0.00 40.72 3.41
3053 3165 3.568007 CGTCCCAAAATTCTTGTCTTGGA 59.432 43.478 5.99 0.95 40.72 3.53
3054 3166 3.305335 CCGTCCCAAAATTCTTGTCTTGG 60.305 47.826 0.00 0.00 38.45 3.61
3055 3167 3.568007 TCCGTCCCAAAATTCTTGTCTTG 59.432 43.478 0.00 0.00 0.00 3.02
3056 3168 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3057 3169 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3058 3170 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3059 3171 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3060 3172 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3061 3173 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3062 3174 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3063 3175 1.751437 CTCCCTCCGTCCCAAAATTC 58.249 55.000 0.00 0.00 0.00 2.17
3064 3176 0.323451 GCTCCCTCCGTCCCAAAATT 60.323 55.000 0.00 0.00 0.00 1.82
3065 3177 1.303282 GCTCCCTCCGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
3066 3178 1.497309 ATGCTCCCTCCGTCCCAAAA 61.497 55.000 0.00 0.00 0.00 2.44
3067 3179 0.619255 TATGCTCCCTCCGTCCCAAA 60.619 55.000 0.00 0.00 0.00 3.28
3068 3180 0.399949 ATATGCTCCCTCCGTCCCAA 60.400 55.000 0.00 0.00 0.00 4.12
3069 3181 0.399949 AATATGCTCCCTCCGTCCCA 60.400 55.000 0.00 0.00 0.00 4.37
3070 3182 1.640917 TAATATGCTCCCTCCGTCCC 58.359 55.000 0.00 0.00 0.00 4.46
3071 3183 3.600388 CAATAATATGCTCCCTCCGTCC 58.400 50.000 0.00 0.00 0.00 4.79
3072 3184 3.003480 GCAATAATATGCTCCCTCCGTC 58.997 50.000 0.00 0.00 43.06 4.79
3073 3185 3.059352 GCAATAATATGCTCCCTCCGT 57.941 47.619 0.00 0.00 43.06 4.69
3221 3596 4.329545 GGCCGGGTCAGTTGCAGA 62.330 66.667 2.18 0.00 0.00 4.26
3350 3725 5.251764 AGCTAGTCTACACGAAGAACCTAA 58.748 41.667 0.00 0.00 0.00 2.69
3403 3778 3.820467 CTCAAACATGCCAACTAGTCCAA 59.180 43.478 0.00 0.00 0.00 3.53
3460 3857 0.692419 GATCCAGGGGAGGAGCAGAA 60.692 60.000 0.00 0.00 43.47 3.02
3461 3858 1.074926 GATCCAGGGGAGGAGCAGA 60.075 63.158 0.00 0.00 43.47 4.26
3462 3859 1.074623 AGATCCAGGGGAGGAGCAG 60.075 63.158 0.83 0.00 46.36 4.24
3463 3860 1.383664 CAGATCCAGGGGAGGAGCA 60.384 63.158 0.83 0.00 46.36 4.26
3464 3861 2.817056 GCAGATCCAGGGGAGGAGC 61.817 68.421 0.00 0.00 44.32 4.70
3480 3877 2.113774 CACAACAGCAGAGGGGCA 59.886 61.111 0.00 0.00 35.83 5.36
3526 3953 2.435586 CACAGCAGAAGAGGGGCG 60.436 66.667 0.00 0.00 0.00 6.13
3587 4031 1.220236 AGGGATGGAGAGAAGGGAGAG 59.780 57.143 0.00 0.00 0.00 3.20
3656 4100 5.912149 AATATCCAATGGCCAGAGTCTTA 57.088 39.130 13.05 0.00 0.00 2.10
3699 4143 1.952367 GCATGGGAAGTGGGTGAAGAG 60.952 57.143 0.00 0.00 0.00 2.85
3765 4209 6.419791 ACATCCATTAAGTAATTCCGGACAA 58.580 36.000 1.83 0.00 0.00 3.18
3766 4210 5.996644 ACATCCATTAAGTAATTCCGGACA 58.003 37.500 1.83 0.00 0.00 4.02
3938 5316 9.262358 GGGTGAATCTACACTCTAAAATACATC 57.738 37.037 0.00 0.00 38.14 3.06
3939 5317 8.768397 TGGGTGAATCTACACTCTAAAATACAT 58.232 33.333 0.00 0.00 41.33 2.29
3940 5318 8.141298 TGGGTGAATCTACACTCTAAAATACA 57.859 34.615 0.00 0.00 41.33 2.29
3941 5319 9.262358 GATGGGTGAATCTACACTCTAAAATAC 57.738 37.037 0.00 0.00 41.33 1.89
3942 5320 9.213777 AGATGGGTGAATCTACACTCTAAAATA 57.786 33.333 0.00 0.00 41.33 1.40
3943 5321 8.095452 AGATGGGTGAATCTACACTCTAAAAT 57.905 34.615 0.00 0.00 41.33 1.82
3944 5322 7.496346 AGATGGGTGAATCTACACTCTAAAA 57.504 36.000 0.00 0.00 41.33 1.52
3945 5323 7.331026 CAAGATGGGTGAATCTACACTCTAAA 58.669 38.462 0.00 0.00 41.33 1.85
3946 5324 6.630413 GCAAGATGGGTGAATCTACACTCTAA 60.630 42.308 0.00 0.00 41.33 2.10
3947 5325 5.163405 GCAAGATGGGTGAATCTACACTCTA 60.163 44.000 0.00 0.00 41.33 2.43
3948 5326 4.383552 GCAAGATGGGTGAATCTACACTCT 60.384 45.833 0.00 0.00 41.33 3.24
3949 5327 3.873952 GCAAGATGGGTGAATCTACACTC 59.126 47.826 0.00 0.00 41.16 3.51
3950 5328 3.521126 AGCAAGATGGGTGAATCTACACT 59.479 43.478 0.00 0.00 40.22 3.55
3951 5329 3.873952 GAGCAAGATGGGTGAATCTACAC 59.126 47.826 0.00 0.00 35.83 2.90
3952 5330 3.118261 GGAGCAAGATGGGTGAATCTACA 60.118 47.826 0.00 0.00 35.83 2.74
3953 5331 3.471680 GGAGCAAGATGGGTGAATCTAC 58.528 50.000 0.00 0.00 35.83 2.59
3954 5332 2.103094 CGGAGCAAGATGGGTGAATCTA 59.897 50.000 0.00 0.00 35.83 1.98
3955 5333 1.134280 CGGAGCAAGATGGGTGAATCT 60.134 52.381 0.00 0.00 38.59 2.40
3956 5334 1.303309 CGGAGCAAGATGGGTGAATC 58.697 55.000 0.00 0.00 0.00 2.52
3957 5335 0.620556 ACGGAGCAAGATGGGTGAAT 59.379 50.000 0.00 0.00 0.00 2.57
3958 5336 1.271856 TACGGAGCAAGATGGGTGAA 58.728 50.000 0.00 0.00 0.00 3.18
3959 5337 1.138859 CATACGGAGCAAGATGGGTGA 59.861 52.381 0.00 0.00 0.00 4.02
3960 5338 1.134401 ACATACGGAGCAAGATGGGTG 60.134 52.381 0.00 0.00 0.00 4.61
3961 5339 1.204146 ACATACGGAGCAAGATGGGT 58.796 50.000 0.00 0.00 0.00 4.51
3962 5340 2.365617 ACTACATACGGAGCAAGATGGG 59.634 50.000 0.00 0.00 0.00 4.00
3963 5341 3.553096 GGACTACATACGGAGCAAGATGG 60.553 52.174 0.00 0.00 0.00 3.51
3964 5342 3.068165 TGGACTACATACGGAGCAAGATG 59.932 47.826 0.00 0.00 0.00 2.90
3965 5343 3.296854 TGGACTACATACGGAGCAAGAT 58.703 45.455 0.00 0.00 0.00 2.40
3966 5344 2.730382 TGGACTACATACGGAGCAAGA 58.270 47.619 0.00 0.00 0.00 3.02
3967 5345 3.735237 ATGGACTACATACGGAGCAAG 57.265 47.619 0.00 0.00 38.26 4.01
3968 5346 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
3969 5347 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
3970 5348 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
3971 5349 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
4004 5382 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4006 5384 5.011840 GCTCCCTCCGTTCCTAAATATAAGT 59.988 44.000 0.00 0.00 0.00 2.24
4015 5393 0.325296 ACATGCTCCCTCCGTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
4016 5394 0.325296 TACATGCTCCCTCCGTTCCT 60.325 55.000 0.00 0.00 0.00 3.36
4019 5397 3.039011 ACTAATACATGCTCCCTCCGTT 58.961 45.455 0.00 0.00 0.00 4.44
4030 5408 6.406692 ACAGTACCCAGCTACTAATACATG 57.593 41.667 0.00 0.00 0.00 3.21
4071 5616 6.121776 TCTACACTCCAAAATACACATGGT 57.878 37.500 0.00 0.00 35.66 3.55
4072 5617 7.336679 TGAATCTACACTCCAAAATACACATGG 59.663 37.037 0.00 0.00 35.49 3.66
4073 5618 8.177663 GTGAATCTACACTCCAAAATACACATG 58.822 37.037 0.00 0.00 37.73 3.21
4074 5619 7.336931 GGTGAATCTACACTCCAAAATACACAT 59.663 37.037 0.00 0.00 40.22 3.21
4075 5620 6.653320 GGTGAATCTACACTCCAAAATACACA 59.347 38.462 0.00 0.00 40.22 3.72
4076 5621 6.093633 GGGTGAATCTACACTCCAAAATACAC 59.906 42.308 0.00 0.00 40.22 2.90
4077 5622 6.177610 GGGTGAATCTACACTCCAAAATACA 58.822 40.000 0.00 0.00 40.22 2.29
4078 5623 6.177610 TGGGTGAATCTACACTCCAAAATAC 58.822 40.000 0.00 0.00 40.18 1.89
4079 5624 6.381498 TGGGTGAATCTACACTCCAAAATA 57.619 37.500 0.00 0.00 40.18 1.40
4080 5625 5.255397 TGGGTGAATCTACACTCCAAAAT 57.745 39.130 0.00 0.00 40.18 1.82
4081 5626 4.715534 TGGGTGAATCTACACTCCAAAA 57.284 40.909 0.00 0.00 40.18 2.44
4082 5627 4.927267 ATGGGTGAATCTACACTCCAAA 57.073 40.909 0.00 0.00 41.01 3.28
4083 5628 4.927267 AATGGGTGAATCTACACTCCAA 57.073 40.909 0.00 0.00 41.01 3.53
4084 5629 4.927267 AAATGGGTGAATCTACACTCCA 57.073 40.909 0.00 0.00 40.18 3.86
4085 5630 4.142381 GCAAAATGGGTGAATCTACACTCC 60.142 45.833 0.00 0.00 40.18 3.85
4086 5631 4.702131 AGCAAAATGGGTGAATCTACACTC 59.298 41.667 0.00 0.00 41.16 3.51
4087 5632 4.666512 AGCAAAATGGGTGAATCTACACT 58.333 39.130 0.00 0.00 40.22 3.55
4088 5633 4.142381 GGAGCAAAATGGGTGAATCTACAC 60.142 45.833 0.00 0.00 39.70 2.90
4089 5634 4.016444 GGAGCAAAATGGGTGAATCTACA 58.984 43.478 0.00 0.00 0.00 2.74
4090 5635 3.065371 CGGAGCAAAATGGGTGAATCTAC 59.935 47.826 0.00 0.00 0.00 2.59
4091 5636 3.278574 CGGAGCAAAATGGGTGAATCTA 58.721 45.455 0.00 0.00 0.00 1.98
4092 5637 2.094675 CGGAGCAAAATGGGTGAATCT 58.905 47.619 0.00 0.00 0.00 2.40
4093 5638 1.818674 ACGGAGCAAAATGGGTGAATC 59.181 47.619 0.00 0.00 0.00 2.52
4094 5639 1.923356 ACGGAGCAAAATGGGTGAAT 58.077 45.000 0.00 0.00 0.00 2.57
4095 5640 2.570415 TACGGAGCAAAATGGGTGAA 57.430 45.000 0.00 0.00 0.00 3.18
4096 5641 2.290641 ACATACGGAGCAAAATGGGTGA 60.291 45.455 0.00 0.00 0.00 4.02
4097 5642 2.091541 ACATACGGAGCAAAATGGGTG 58.908 47.619 0.00 0.00 0.00 4.61
4098 5643 2.507407 ACATACGGAGCAAAATGGGT 57.493 45.000 0.00 0.00 0.00 4.51
4099 5644 3.541632 ACTACATACGGAGCAAAATGGG 58.458 45.455 0.00 0.00 0.00 4.00
4100 5645 3.560068 GGACTACATACGGAGCAAAATGG 59.440 47.826 0.00 0.00 0.00 3.16
4101 5646 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4102 5647 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4103 5648 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4104 5649 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
4105 5650 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
4106 5651 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
4107 5652 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
4108 5653 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
4137 5682 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4138 5683 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4139 5684 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4140 5685 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4141 5686 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4142 5687 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
4143 5688 5.011840 GCTCCCTCCGTTCCTAAATATAAGT 59.988 44.000 0.00 0.00 0.00 2.24
4144 5689 5.011738 TGCTCCCTCCGTTCCTAAATATAAG 59.988 44.000 0.00 0.00 0.00 1.73
4145 5690 4.903049 TGCTCCCTCCGTTCCTAAATATAA 59.097 41.667 0.00 0.00 0.00 0.98
4146 5691 4.485875 TGCTCCCTCCGTTCCTAAATATA 58.514 43.478 0.00 0.00 0.00 0.86
4147 5692 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
4148 5693 2.754465 TGCTCCCTCCGTTCCTAAATA 58.246 47.619 0.00 0.00 0.00 1.40
4149 5694 1.580059 TGCTCCCTCCGTTCCTAAAT 58.420 50.000 0.00 0.00 0.00 1.40
4150 5695 1.209504 CATGCTCCCTCCGTTCCTAAA 59.790 52.381 0.00 0.00 0.00 1.85
4151 5696 0.830648 CATGCTCCCTCCGTTCCTAA 59.169 55.000 0.00 0.00 0.00 2.69
4152 5697 0.325296 ACATGCTCCCTCCGTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
4153 5698 0.325296 TACATGCTCCCTCCGTTCCT 60.325 55.000 0.00 0.00 0.00 3.36
4154 5699 0.759346 ATACATGCTCCCTCCGTTCC 59.241 55.000 0.00 0.00 0.00 3.62
4155 5700 2.622064 AATACATGCTCCCTCCGTTC 57.378 50.000 0.00 0.00 0.00 3.95
4156 5701 3.039011 ACTAATACATGCTCCCTCCGTT 58.961 45.455 0.00 0.00 0.00 4.44
4157 5702 2.679082 ACTAATACATGCTCCCTCCGT 58.321 47.619 0.00 0.00 0.00 4.69
4158 5703 3.367498 GCTACTAATACATGCTCCCTCCG 60.367 52.174 0.00 0.00 0.00 4.63
4159 5704 3.835395 AGCTACTAATACATGCTCCCTCC 59.165 47.826 0.00 0.00 0.00 4.30
4160 5705 4.322349 CCAGCTACTAATACATGCTCCCTC 60.322 50.000 0.00 0.00 0.00 4.30
4161 5706 3.580458 CCAGCTACTAATACATGCTCCCT 59.420 47.826 0.00 0.00 0.00 4.20
4162 5707 3.307059 CCCAGCTACTAATACATGCTCCC 60.307 52.174 0.00 0.00 0.00 4.30
4163 5708 3.325135 ACCCAGCTACTAATACATGCTCC 59.675 47.826 0.00 0.00 0.00 4.70
4164 5709 4.608948 ACCCAGCTACTAATACATGCTC 57.391 45.455 0.00 0.00 0.00 4.26
4165 5710 5.011125 CAGTACCCAGCTACTAATACATGCT 59.989 44.000 0.00 0.00 0.00 3.79
4166 5711 5.221461 ACAGTACCCAGCTACTAATACATGC 60.221 44.000 0.00 0.00 0.00 4.06
4167 5712 6.406692 ACAGTACCCAGCTACTAATACATG 57.593 41.667 0.00 0.00 0.00 3.21
4168 5713 7.232941 CCTTACAGTACCCAGCTACTAATACAT 59.767 40.741 0.00 0.00 0.00 2.29
4169 5714 6.548622 CCTTACAGTACCCAGCTACTAATACA 59.451 42.308 0.00 0.00 0.00 2.29
4170 5715 6.548993 ACCTTACAGTACCCAGCTACTAATAC 59.451 42.308 0.00 0.00 0.00 1.89
4171 5716 6.548622 CACCTTACAGTACCCAGCTACTAATA 59.451 42.308 0.00 0.00 0.00 0.98
4172 5717 5.363005 CACCTTACAGTACCCAGCTACTAAT 59.637 44.000 0.00 0.00 0.00 1.73
4173 5718 4.708421 CACCTTACAGTACCCAGCTACTAA 59.292 45.833 0.00 0.00 0.00 2.24
4174 5719 4.018141 TCACCTTACAGTACCCAGCTACTA 60.018 45.833 0.00 0.00 0.00 1.82
4175 5720 3.097614 CACCTTACAGTACCCAGCTACT 58.902 50.000 0.00 0.00 0.00 2.57
4176 5721 3.094572 TCACCTTACAGTACCCAGCTAC 58.905 50.000 0.00 0.00 0.00 3.58
4177 5722 3.245514 ACTCACCTTACAGTACCCAGCTA 60.246 47.826 0.00 0.00 0.00 3.32
4178 5723 2.180276 CTCACCTTACAGTACCCAGCT 58.820 52.381 0.00 0.00 0.00 4.24
4179 5724 1.900486 ACTCACCTTACAGTACCCAGC 59.100 52.381 0.00 0.00 0.00 4.85
4180 5725 2.353803 GCACTCACCTTACAGTACCCAG 60.354 54.545 0.00 0.00 0.00 4.45
4181 5726 1.621814 GCACTCACCTTACAGTACCCA 59.378 52.381 0.00 0.00 0.00 4.51
4182 5727 1.900486 AGCACTCACCTTACAGTACCC 59.100 52.381 0.00 0.00 0.00 3.69
4183 5728 3.508793 TGTAGCACTCACCTTACAGTACC 59.491 47.826 0.00 0.00 0.00 3.34
4184 5729 4.217983 ACTGTAGCACTCACCTTACAGTAC 59.782 45.833 12.85 0.00 44.06 2.73
4185 5730 4.404640 ACTGTAGCACTCACCTTACAGTA 58.595 43.478 12.85 0.00 44.06 2.74
4186 5731 3.231818 ACTGTAGCACTCACCTTACAGT 58.768 45.455 9.62 9.62 41.99 3.55
4187 5732 3.944055 ACTGTAGCACTCACCTTACAG 57.056 47.619 8.50 8.50 40.30 2.74
4188 5733 3.508793 GGTACTGTAGCACTCACCTTACA 59.491 47.826 11.85 0.00 0.00 2.41
4189 5734 3.508793 TGGTACTGTAGCACTCACCTTAC 59.491 47.826 15.14 0.00 0.00 2.34
4190 5735 3.770046 TGGTACTGTAGCACTCACCTTA 58.230 45.455 15.14 0.00 0.00 2.69
4191 5736 2.605257 TGGTACTGTAGCACTCACCTT 58.395 47.619 15.14 0.00 0.00 3.50
4192 5737 2.304221 TGGTACTGTAGCACTCACCT 57.696 50.000 15.14 0.00 0.00 4.00
4193 5738 2.233922 ACATGGTACTGTAGCACTCACC 59.766 50.000 20.63 4.36 39.21 4.02
4194 5739 3.512680 GACATGGTACTGTAGCACTCAC 58.487 50.000 20.63 9.81 39.21 3.51
4195 5740 2.163613 CGACATGGTACTGTAGCACTCA 59.836 50.000 20.63 0.00 39.21 3.41
4196 5741 2.422479 TCGACATGGTACTGTAGCACTC 59.578 50.000 20.63 16.14 39.21 3.51
4197 5742 2.163815 GTCGACATGGTACTGTAGCACT 59.836 50.000 20.63 9.82 39.21 4.40
4198 5743 2.163815 AGTCGACATGGTACTGTAGCAC 59.836 50.000 20.63 8.61 39.21 4.40
4199 5744 2.443416 AGTCGACATGGTACTGTAGCA 58.557 47.619 20.51 20.51 40.84 3.49
4200 5745 3.626670 ACTAGTCGACATGGTACTGTAGC 59.373 47.826 19.50 9.96 0.00 3.58
4201 5746 4.272991 GGACTAGTCGACATGGTACTGTAG 59.727 50.000 19.50 9.50 0.00 2.74
4202 5747 4.194640 GGACTAGTCGACATGGTACTGTA 58.805 47.826 19.50 0.00 0.00 2.74
4203 5748 3.015327 GGACTAGTCGACATGGTACTGT 58.985 50.000 19.50 4.11 0.00 3.55
4204 5749 3.014623 TGGACTAGTCGACATGGTACTG 58.985 50.000 19.50 0.91 0.00 2.74
4205 5750 3.280295 CTGGACTAGTCGACATGGTACT 58.720 50.000 19.50 0.00 0.00 2.73
4206 5751 2.223525 GCTGGACTAGTCGACATGGTAC 60.224 54.545 19.50 13.70 0.00 3.34
4207 5752 2.022195 GCTGGACTAGTCGACATGGTA 58.978 52.381 19.50 0.00 0.00 3.25
4280 5825 6.765989 ACAGTGACACTAAAGCAAGAATTACA 59.234 34.615 8.02 0.00 0.00 2.41
4311 5856 5.453198 CCCAGCCCCACACAAATATATTTTC 60.453 44.000 8.01 0.00 0.00 2.29
4579 6127 6.851609 TGCCAATGTAGTTATAAGCAAACAG 58.148 36.000 0.00 0.00 0.00 3.16
4661 6209 3.304659 GCTCGGCTTCAGATGTTTTGAAA 60.305 43.478 0.00 0.00 34.41 2.69
4668 6216 1.186200 TGTAGCTCGGCTTCAGATGT 58.814 50.000 3.71 0.00 40.44 3.06
4979 6545 7.201539 GCATAATGATGATCAGAGAAATCCTCG 60.202 40.741 0.09 0.00 40.00 4.63
5401 6979 3.952323 ACTCCGTCTCCATTCTTCGAATA 59.048 43.478 0.00 0.00 0.00 1.75
5402 6980 2.761208 ACTCCGTCTCCATTCTTCGAAT 59.239 45.455 0.00 0.00 0.00 3.34
5403 6981 2.168496 ACTCCGTCTCCATTCTTCGAA 58.832 47.619 0.00 0.00 0.00 3.71
5404 6982 1.835494 ACTCCGTCTCCATTCTTCGA 58.165 50.000 0.00 0.00 0.00 3.71
5405 6983 3.992260 ATACTCCGTCTCCATTCTTCG 57.008 47.619 0.00 0.00 0.00 3.79
5479 7057 4.174704 TGGCTCATCAGCTTAATTCCAT 57.825 40.909 0.00 0.00 46.03 3.41
5629 7207 4.524714 TCTTTTGCTCCCTATATCTCTCCG 59.475 45.833 0.00 0.00 0.00 4.63
6168 7746 3.145861 TCATCAATACCCCCATCCTCCTA 59.854 47.826 0.00 0.00 0.00 2.94
6308 7886 1.226945 GCCATACAACATTGCGGGC 60.227 57.895 6.16 6.16 35.69 6.13
6337 7915 0.249398 ATGTCGCCTTTTAGTCGGCT 59.751 50.000 0.00 0.00 44.11 5.52
6536 8114 2.184322 CGTCCGCTATGCACTGGT 59.816 61.111 0.00 0.00 0.00 4.00
6591 8169 2.617788 CCTCCCATGTCAAATTCGGTCA 60.618 50.000 0.00 0.00 0.00 4.02
6679 8258 2.019249 GCACATGGATAGCAAGCTTCA 58.981 47.619 0.00 0.00 0.00 3.02
6937 8531 2.401583 ATGGACGCTGCACAGAAATA 57.598 45.000 0.81 0.00 0.00 1.40
6939 8533 2.401583 ATATGGACGCTGCACAGAAA 57.598 45.000 0.81 0.00 0.00 2.52
6972 8566 4.026744 TGAGAAGGTCCATTCGATTCTCT 58.973 43.478 18.46 0.80 43.95 3.10
7008 8602 2.663196 GGTGTTCCCTGAGGACCG 59.337 66.667 0.00 0.00 43.90 4.79
7349 8953 2.846206 TCCTGGCTCATTGAAGTATGGT 59.154 45.455 0.00 0.00 0.00 3.55
7527 9261 1.139989 CAGTGAGTACTTGTGCACCG 58.860 55.000 15.69 8.09 34.07 4.94
7568 9302 6.094048 ACATACATCCACATTCAGCAAGTTAC 59.906 38.462 0.00 0.00 0.00 2.50
7748 9521 6.437162 TGGAGCTTATTTTAGATTGTTTGGCT 59.563 34.615 0.00 0.00 0.00 4.75
8069 9843 3.636679 TGGTTCAAATGTTCAAGGTCCA 58.363 40.909 0.00 0.00 0.00 4.02
8071 9845 4.280677 TCCATGGTTCAAATGTTCAAGGTC 59.719 41.667 12.58 0.00 0.00 3.85
8147 9989 4.773323 AAAACAGAGTCCAAGCTAATGC 57.227 40.909 0.00 0.00 40.05 3.56
8300 10174 5.932619 TTTACTGCTATGGCTGTCTTAGA 57.067 39.130 16.65 0.00 45.22 2.10
8302 10176 6.889198 AGATTTTACTGCTATGGCTGTCTTA 58.111 36.000 16.65 4.47 45.22 2.10
8315 10201 5.872070 ACTGACTCTAGCAAGATTTTACTGC 59.128 40.000 0.00 0.00 0.00 4.40
8401 10287 6.405397 CCATACTACAACCAAATTAAGTGCCC 60.405 42.308 0.00 0.00 0.00 5.36
8701 10754 7.348201 CACGCAAATCTACCTGATTATTCTTC 58.652 38.462 0.00 0.00 43.99 2.87
9138 11418 3.452627 AGGACCTCATGAACTAAATCGCT 59.547 43.478 0.00 0.00 0.00 4.93
9156 11439 6.248569 TCTAGGATAAAACATTGGGAGGAC 57.751 41.667 0.00 0.00 0.00 3.85
9226 11510 2.166459 GGCTAAAAGGAACCAATGCTCC 59.834 50.000 0.00 0.00 0.00 4.70
9229 11513 3.676291 TTGGCTAAAAGGAACCAATGC 57.324 42.857 0.00 0.00 37.26 3.56
9290 11574 0.739462 ACGCGCTGCAGCATTACTTA 60.739 50.000 36.03 0.00 42.21 2.24
9347 11631 7.500559 ACAGGTCTATTCCTATCTTTGAAATGC 59.499 37.037 0.00 0.00 35.87 3.56
9372 11656 8.294577 ACTGGTTAATTGGACGAATTCTTAAAC 58.705 33.333 3.52 4.13 35.74 2.01
9373 11657 8.398878 ACTGGTTAATTGGACGAATTCTTAAA 57.601 30.769 3.52 0.00 35.74 1.52
9374 11658 7.989416 ACTGGTTAATTGGACGAATTCTTAA 57.011 32.000 3.52 0.00 35.74 1.85
9406 11690 7.141758 ACCCTATGAATAGAGATTGCTCAAA 57.858 36.000 0.00 0.00 43.81 2.69
9407 11691 6.327365 TGACCCTATGAATAGAGATTGCTCAA 59.673 38.462 0.00 0.00 43.81 3.02
9411 11695 5.931146 CAGTGACCCTATGAATAGAGATTGC 59.069 44.000 0.00 0.00 32.05 3.56
9412 11696 7.015098 ACTCAGTGACCCTATGAATAGAGATTG 59.985 40.741 0.00 0.00 32.05 2.67
9421 11705 3.031736 GGCTACTCAGTGACCCTATGAA 58.968 50.000 0.00 0.00 0.00 2.57
9424 11708 1.214673 TCGGCTACTCAGTGACCCTAT 59.785 52.381 0.00 0.00 0.00 2.57
9429 11713 3.119245 TGGTTTATCGGCTACTCAGTGAC 60.119 47.826 0.00 0.00 0.00 3.67
9433 11717 7.441157 TGATTAATTGGTTTATCGGCTACTCAG 59.559 37.037 0.00 0.00 0.00 3.35
9438 11722 9.126151 TCAAATGATTAATTGGTTTATCGGCTA 57.874 29.630 0.00 0.00 0.00 3.93
9523 11807 9.715121 TTGTTAAAGTAGTCATTAACTGGTAGG 57.285 33.333 9.12 0.00 40.79 3.18
9541 11894 9.382275 AGGCTAATTGGCAAATTATTGTTAAAG 57.618 29.630 16.20 0.00 44.55 1.85
9553 11906 5.542251 GGGGATTAATAGGCTAATTGGCAAA 59.458 40.000 16.20 2.95 44.55 3.68
9564 11917 4.935578 AGCATTTAGGGGGATTAATAGGC 58.064 43.478 0.00 0.00 0.00 3.93
9575 11928 4.437682 TCAGTTGGATAGCATTTAGGGG 57.562 45.455 0.00 0.00 0.00 4.79
9576 11929 7.227156 ACTAATCAGTTGGATAGCATTTAGGG 58.773 38.462 0.00 0.00 34.28 3.53
9583 11936 4.469586 TGGTGACTAATCAGTTGGATAGCA 59.530 41.667 0.00 0.00 34.75 3.49
9587 11940 5.505181 AACTGGTGACTAATCAGTTGGAT 57.495 39.130 3.28 0.00 46.17 3.41
9594 11947 7.822334 ACGAAATCATTAACTGGTGACTAATCA 59.178 33.333 0.00 0.00 0.00 2.57
9604 11957 7.304735 TCATTGTTGACGAAATCATTAACTGG 58.695 34.615 0.00 0.00 37.11 4.00
9771 12134 9.988815 ATGTGATAGTTTCTTGTCATATACTCC 57.011 33.333 0.00 0.00 0.00 3.85
9781 12144 4.082571 GCCTGCAATGTGATAGTTTCTTGT 60.083 41.667 0.00 0.00 0.00 3.16
9799 12162 3.243535 GGATTTTTGTAGCCATAGCCTGC 60.244 47.826 0.00 0.00 41.25 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.