Multiple sequence alignment - TraesCS1B01G146200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G146200 chr1B 100.000 7012 0 0 976 7987 202012597 202005586 0.000000e+00 12949.0
1 TraesCS1B01G146200 chr1B 100.000 340 0 0 1 340 202013572 202013233 5.260000e-176 628.0
2 TraesCS1B01G146200 chr1B 91.935 186 7 2 7652 7834 180834854 180835034 3.700000e-63 254.0
3 TraesCS1B01G146200 chr1B 97.895 95 2 0 7203 7297 453881031 453880937 1.780000e-36 165.0
4 TraesCS1B01G146200 chr1B 97.872 94 2 0 7203 7296 70235761 70235854 6.410000e-36 163.0
5 TraesCS1B01G146200 chr1B 96.907 97 3 0 7203 7299 135935762 135935858 6.410000e-36 163.0
6 TraesCS1B01G146200 chr1B 97.872 94 2 0 7203 7296 567190867 567190774 6.410000e-36 163.0
7 TraesCS1B01G146200 chr1B 85.263 95 6 3 3043 3130 51601897 51601804 3.070000e-14 91.6
8 TraesCS1B01G146200 chr1D 95.877 3590 87 18 3634 7199 133566433 133569985 0.000000e+00 5753.0
9 TraesCS1B01G146200 chr1D 96.657 2393 48 8 1129 3491 133564040 133566430 0.000000e+00 3947.0
10 TraesCS1B01G146200 chr1D 96.629 267 9 0 7302 7568 133569979 133570245 2.050000e-120 444.0
11 TraesCS1B01G146200 chr1D 95.652 253 11 0 88 340 133563230 133563482 2.680000e-109 407.0
12 TraesCS1B01G146200 chr1D 84.636 371 21 11 7619 7961 133570434 133570796 3.570000e-88 337.0
13 TraesCS1B01G146200 chr1D 90.000 90 5 1 7747 7832 25453927 25454016 6.550000e-21 113.0
14 TraesCS1B01G146200 chr1A 96.082 3012 84 13 3776 6765 165176025 165173026 0.000000e+00 4878.0
15 TraesCS1B01G146200 chr1A 96.709 2674 60 7 1129 3777 165178777 165176107 0.000000e+00 4425.0
16 TraesCS1B01G146200 chr1A 95.400 413 12 2 6795 7202 165173034 165172624 0.000000e+00 651.0
17 TraesCS1B01G146200 chr1A 93.701 254 14 2 88 340 165179388 165179136 5.850000e-101 379.0
18 TraesCS1B01G146200 chr1A 86.630 359 21 8 7619 7958 165172119 165171769 9.790000e-99 372.0
19 TraesCS1B01G146200 chr1A 90.909 275 17 1 7302 7568 165172633 165172359 5.890000e-96 363.0
20 TraesCS1B01G146200 chr1A 88.957 163 6 3 7652 7807 26491318 26491475 2.940000e-44 191.0
21 TraesCS1B01G146200 chr1A 96.471 85 2 1 3 87 32933751 32933668 1.080000e-28 139.0
22 TraesCS1B01G146200 chr1A 97.619 42 1 0 7581 7622 165172247 165172206 1.110000e-08 73.1
23 TraesCS1B01G146200 chr2A 90.426 188 9 3 7652 7835 676466293 676466475 1.040000e-58 239.0
24 TraesCS1B01G146200 chr2A 91.304 69 5 1 3056 3124 775250785 775250852 8.530000e-15 93.5
25 TraesCS1B01G146200 chr2B 89.172 157 9 5 7658 7811 349521603 349521452 1.060000e-43 189.0
26 TraesCS1B01G146200 chr2B 98.750 80 1 0 3 82 7933857 7933936 8.360000e-30 143.0
27 TraesCS1B01G146200 chr2B 97.468 79 2 0 3 81 196542346 196542268 1.400000e-27 135.0
28 TraesCS1B01G146200 chr2B 94.118 85 4 1 3 87 172897772 172897855 2.340000e-25 128.0
29 TraesCS1B01G146200 chr2B 86.747 83 10 1 3042 3124 785276641 785276560 3.070000e-14 91.6
30 TraesCS1B01G146200 chr6B 96.939 98 3 0 7203 7300 460504569 460504666 1.780000e-36 165.0
31 TraesCS1B01G146200 chr6B 81.522 92 12 1 3036 3122 615186936 615187027 4.000000e-08 71.3
32 TraesCS1B01G146200 chr5A 96.907 97 3 0 7203 7299 601510681 601510777 6.410000e-36 163.0
33 TraesCS1B01G146200 chr5A 96.809 94 3 0 7203 7296 527914971 527915064 2.980000e-34 158.0
34 TraesCS1B01G146200 chr5A 98.684 76 1 0 3 78 624408222 624408147 1.400000e-27 135.0
35 TraesCS1B01G146200 chr5A 84.706 85 8 1 3043 3122 647484984 647485068 6.640000e-11 80.5
36 TraesCS1B01G146200 chr4B 97.872 94 2 0 7203 7296 223382953 223382860 6.410000e-36 163.0
37 TraesCS1B01G146200 chr4B 97.872 94 2 0 7203 7296 321732442 321732535 6.410000e-36 163.0
38 TraesCS1B01G146200 chr5D 93.269 104 7 0 7733 7836 514559875 514559772 3.860000e-33 154.0
39 TraesCS1B01G146200 chr5B 94.505 91 5 0 7733 7823 646675881 646675791 3.010000e-29 141.0
40 TraesCS1B01G146200 chr7A 95.349 86 2 1 3 86 258689619 258689704 1.400000e-27 135.0
41 TraesCS1B01G146200 chr7A 98.667 75 1 0 3 77 717563514 717563440 5.030000e-27 134.0
42 TraesCS1B01G146200 chr6A 97.436 78 2 0 3 80 153687578 153687655 5.030000e-27 134.0
43 TraesCS1B01G146200 chr3B 98.667 75 1 0 3 77 520471043 520471117 5.030000e-27 134.0
44 TraesCS1B01G146200 chr3B 91.667 72 6 0 3999 4070 216396411 216396340 5.100000e-17 100.0
45 TraesCS1B01G146200 chr7D 91.781 73 6 0 3999 4071 2788906 2788978 1.420000e-17 102.0
46 TraesCS1B01G146200 chr7D 83.721 86 8 2 3043 3122 603826564 603826479 8.590000e-10 76.8
47 TraesCS1B01G146200 chr6D 91.781 73 6 0 3999 4071 15675429 15675357 1.420000e-17 102.0
48 TraesCS1B01G146200 chr3D 85.882 85 7 1 3043 3122 352783210 352783126 1.430000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G146200 chr1B 202005586 202013572 7986 True 6788.500000 12949 100.000000 1 7987 2 chr1B.!!$R4 7986
1 TraesCS1B01G146200 chr1D 133563230 133570796 7566 False 2177.600000 5753 93.890200 88 7961 5 chr1D.!!$F2 7873
2 TraesCS1B01G146200 chr1A 165171769 165179388 7619 True 1591.585714 4878 93.864286 88 7958 7 chr1A.!!$R2 7870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.037975 TCGCTAGACCGGTCCAAAAC 60.038 55.000 30.82 14.85 0.00 2.43 F
82 83 0.320073 CGCTAGACCGGTCCAAAACA 60.320 55.000 30.82 8.53 0.00 2.83 F
1078 1079 0.531200 CCTCGAGTTCCTTAAGCGGT 59.469 55.000 12.31 0.00 0.00 5.68 F
1120 1121 0.267356 CTCCTCTCCTCCCCTCCATT 59.733 60.000 0.00 0.00 0.00 3.16 F
1826 1842 0.680618 TCTTGGTGGCTGCCAATTTG 59.319 50.000 25.23 14.11 46.22 2.32 F
3351 3383 1.561542 CTCCTTATGCTCTTGGGTGGT 59.438 52.381 0.00 0.00 0.00 4.16 F
4403 4525 1.550524 CTGCTGGCTAGGTGTCACTTA 59.449 52.381 2.35 0.00 0.00 2.24 F
5027 5155 1.248486 GTGAAGAAGCACTTTCCCCC 58.752 55.000 0.00 0.00 39.13 5.40 F
5780 5908 0.599558 CAACAAGATGGTGCAGGTGG 59.400 55.000 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1101 1102 0.267356 AATGGAGGGGAGGAGAGGAG 59.733 60.000 0.00 0.0 0.00 3.69 R
1102 1103 0.725133 AAATGGAGGGGAGGAGAGGA 59.275 55.000 0.00 0.0 0.00 3.71 R
2587 2609 4.519906 TGGGAGAAAAACTGAGGAAAGT 57.480 40.909 0.00 0.0 0.00 2.66 R
2925 2951 7.707464 TGGTATGCATGCTCAAATGAAAAATAG 59.293 33.333 20.33 0.0 0.00 1.73 R
3538 3570 2.677199 TCTTGAGAAGCAGCAGTAACG 58.323 47.619 0.00 0.0 0.00 3.18 R
4895 5023 2.293170 GAAAGAATGGCTGGAGGTAGC 58.707 52.381 0.00 0.0 42.94 3.58 R
5773 5901 2.789409 ATAGTGAGAAACCCACCTGC 57.211 50.000 0.00 0.0 35.23 4.85 R
6840 6986 2.475466 GCAGATGCACACCCATCGG 61.475 63.158 0.00 0.0 44.86 4.18 R
7231 7379 0.178912 AGGGTCCGACCACTTTAGGT 60.179 55.000 19.43 0.0 46.82 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.816449 AAGGACCAAAACTTGCAATTTTG 57.184 34.783 24.72 24.72 43.59 2.44
27 28 3.352554 CAAAACTTGCAATTTTGGGCC 57.647 42.857 24.34 0.00 41.37 5.80
28 29 1.592064 AAACTTGCAATTTTGGGCCG 58.408 45.000 13.36 0.00 0.00 6.13
29 30 0.250252 AACTTGCAATTTTGGGCCGG 60.250 50.000 0.00 0.00 0.00 6.13
30 31 2.031768 TTGCAATTTTGGGCCGGC 59.968 55.556 21.18 21.18 0.00 6.13
31 32 3.543536 TTGCAATTTTGGGCCGGCC 62.544 57.895 38.57 38.57 0.00 6.13
44 45 2.890474 CGGCCGCTCGCAAAGTAT 60.890 61.111 14.67 0.00 40.31 2.12
45 46 1.590525 CGGCCGCTCGCAAAGTATA 60.591 57.895 14.67 0.00 40.31 1.47
46 47 1.548973 CGGCCGCTCGCAAAGTATAG 61.549 60.000 14.67 0.00 40.31 1.31
47 48 0.529992 GGCCGCTCGCAAAGTATAGT 60.530 55.000 0.00 0.00 40.31 2.12
48 49 0.577269 GCCGCTCGCAAAGTATAGTG 59.423 55.000 0.00 0.00 37.47 2.74
49 50 1.801395 GCCGCTCGCAAAGTATAGTGA 60.801 52.381 0.00 0.00 37.47 3.41
50 51 2.120232 CCGCTCGCAAAGTATAGTGAG 58.880 52.381 0.00 0.00 43.40 3.51
54 55 2.537625 CTCGCAAAGTATAGTGAGCAGC 59.462 50.000 5.62 0.00 35.83 5.25
55 56 1.594862 CGCAAAGTATAGTGAGCAGCC 59.405 52.381 0.00 0.00 0.00 4.85
56 57 1.594862 GCAAAGTATAGTGAGCAGCCG 59.405 52.381 0.00 0.00 0.00 5.52
57 58 2.205074 CAAAGTATAGTGAGCAGCCGG 58.795 52.381 0.00 0.00 0.00 6.13
58 59 1.486211 AAGTATAGTGAGCAGCCGGT 58.514 50.000 1.90 0.00 0.00 5.28
59 60 1.033574 AGTATAGTGAGCAGCCGGTC 58.966 55.000 1.90 0.00 40.20 4.79
60 61 0.317938 GTATAGTGAGCAGCCGGTCG 60.318 60.000 1.90 0.00 42.80 4.79
70 71 4.908877 GCCGGTCGCTCGCTAGAC 62.909 72.222 1.90 0.00 36.70 2.59
73 74 4.253257 GGTCGCTCGCTAGACCGG 62.253 72.222 0.00 0.00 46.08 5.28
74 75 3.507009 GTCGCTCGCTAGACCGGT 61.507 66.667 6.92 6.92 0.00 5.28
75 76 3.200593 TCGCTCGCTAGACCGGTC 61.201 66.667 27.67 27.67 0.00 4.79
76 77 4.253257 CGCTCGCTAGACCGGTCC 62.253 72.222 30.82 14.89 0.00 4.46
77 78 3.138798 GCTCGCTAGACCGGTCCA 61.139 66.667 30.82 17.53 0.00 4.02
78 79 2.707849 GCTCGCTAGACCGGTCCAA 61.708 63.158 30.82 18.31 0.00 3.53
79 80 1.888018 CTCGCTAGACCGGTCCAAA 59.112 57.895 30.82 15.70 0.00 3.28
80 81 0.245539 CTCGCTAGACCGGTCCAAAA 59.754 55.000 30.82 13.15 0.00 2.44
81 82 0.037975 TCGCTAGACCGGTCCAAAAC 60.038 55.000 30.82 14.85 0.00 2.43
82 83 0.320073 CGCTAGACCGGTCCAAAACA 60.320 55.000 30.82 8.53 0.00 2.83
83 84 1.874739 CGCTAGACCGGTCCAAAACAA 60.875 52.381 30.82 7.12 0.00 2.83
84 85 2.223745 GCTAGACCGGTCCAAAACAAA 58.776 47.619 30.82 5.74 0.00 2.83
85 86 2.619646 GCTAGACCGGTCCAAAACAAAA 59.380 45.455 30.82 4.72 0.00 2.44
86 87 3.067040 GCTAGACCGGTCCAAAACAAAAA 59.933 43.478 30.82 3.21 0.00 1.94
125 126 3.528853 CGGGGCACGGAGTATACA 58.471 61.111 0.00 0.00 41.61 2.29
147 148 2.165234 CTCGCTCATGTTCTCCTCAAGA 59.835 50.000 0.00 0.00 0.00 3.02
165 166 3.055719 GGTGTGGCCCACATGTCG 61.056 66.667 21.45 0.00 46.32 4.35
202 203 2.914379 GACCAGGTCCACAGAAACG 58.086 57.895 8.65 0.00 0.00 3.60
203 204 0.602905 GACCAGGTCCACAGAAACGG 60.603 60.000 8.65 0.00 0.00 4.44
222 223 1.770324 CAACCCTTCCTCCAGGCTT 59.230 57.895 0.00 0.00 31.69 4.35
995 996 2.032620 TCTAGATCCAGAAGGTTCGCC 58.967 52.381 0.00 0.00 38.43 5.54
996 997 0.744874 TAGATCCAGAAGGTTCGCCG 59.255 55.000 0.00 0.00 43.66 6.46
997 998 1.521681 GATCCAGAAGGTTCGCCGG 60.522 63.158 0.00 0.00 43.66 6.13
998 999 3.682292 ATCCAGAAGGTTCGCCGGC 62.682 63.158 19.07 19.07 43.66 6.13
1000 1001 4.697756 CAGAAGGTTCGCCGGCCA 62.698 66.667 23.46 4.67 43.66 5.36
1001 1002 3.717294 AGAAGGTTCGCCGGCCAT 61.717 61.111 23.46 0.47 43.66 4.40
1002 1003 3.508840 GAAGGTTCGCCGGCCATG 61.509 66.667 23.46 7.26 43.66 3.66
1023 1024 4.148645 GCGTTCGGCGGCTTCTTC 62.149 66.667 7.21 0.00 41.69 2.87
1024 1025 3.838795 CGTTCGGCGGCTTCTTCG 61.839 66.667 7.21 1.03 36.85 3.79
1025 1026 2.737376 GTTCGGCGGCTTCTTCGT 60.737 61.111 7.21 0.00 0.00 3.85
1026 1027 2.736995 TTCGGCGGCTTCTTCGTG 60.737 61.111 7.21 0.00 0.00 4.35
1027 1028 4.735132 TCGGCGGCTTCTTCGTGG 62.735 66.667 7.21 0.00 0.00 4.94
1028 1029 4.735132 CGGCGGCTTCTTCGTGGA 62.735 66.667 7.61 0.00 0.00 4.02
1029 1030 3.119096 GGCGGCTTCTTCGTGGAC 61.119 66.667 0.00 0.00 0.00 4.02
1030 1031 3.479269 GCGGCTTCTTCGTGGACG 61.479 66.667 0.00 0.00 41.45 4.79
1039 1040 3.744719 TCGTGGACGAGAAGGCGG 61.745 66.667 0.00 0.00 44.22 6.13
1055 1056 2.742372 GGCGCGTGTGGAGAACAT 60.742 61.111 8.43 0.00 41.97 2.71
1056 1057 2.740714 GGCGCGTGTGGAGAACATC 61.741 63.158 8.43 0.00 41.97 3.06
1057 1058 1.738099 GCGCGTGTGGAGAACATCT 60.738 57.895 8.43 0.00 41.97 2.90
1058 1059 1.291877 GCGCGTGTGGAGAACATCTT 61.292 55.000 8.43 0.00 41.97 2.40
1059 1060 0.716108 CGCGTGTGGAGAACATCTTC 59.284 55.000 0.00 0.00 41.97 2.87
1060 1061 1.079503 GCGTGTGGAGAACATCTTCC 58.920 55.000 0.00 0.00 41.97 3.46
1061 1062 1.338200 GCGTGTGGAGAACATCTTCCT 60.338 52.381 0.00 0.00 41.97 3.36
1062 1063 2.611518 CGTGTGGAGAACATCTTCCTC 58.388 52.381 0.00 0.00 41.97 3.71
1063 1064 2.611518 GTGTGGAGAACATCTTCCTCG 58.388 52.381 0.00 0.00 41.97 4.63
1064 1065 2.231478 GTGTGGAGAACATCTTCCTCGA 59.769 50.000 0.00 0.00 41.97 4.04
1065 1066 2.493675 TGTGGAGAACATCTTCCTCGAG 59.506 50.000 5.13 5.13 32.36 4.04
1066 1067 2.494073 GTGGAGAACATCTTCCTCGAGT 59.506 50.000 12.31 0.00 0.00 4.18
1067 1068 3.056465 GTGGAGAACATCTTCCTCGAGTT 60.056 47.826 12.31 0.00 0.00 3.01
1068 1069 3.193691 TGGAGAACATCTTCCTCGAGTTC 59.806 47.826 12.31 7.47 38.99 3.01
1069 1070 3.429684 GGAGAACATCTTCCTCGAGTTCC 60.430 52.174 12.31 2.36 39.39 3.62
1070 1071 3.436243 AGAACATCTTCCTCGAGTTCCT 58.564 45.455 12.31 0.00 39.39 3.36
1071 1072 3.835395 AGAACATCTTCCTCGAGTTCCTT 59.165 43.478 12.31 0.00 39.39 3.36
1072 1073 5.017490 AGAACATCTTCCTCGAGTTCCTTA 58.983 41.667 12.31 0.00 39.39 2.69
1073 1074 5.480772 AGAACATCTTCCTCGAGTTCCTTAA 59.519 40.000 12.31 0.00 39.39 1.85
1074 1075 5.331876 ACATCTTCCTCGAGTTCCTTAAG 57.668 43.478 12.31 0.00 0.00 1.85
1075 1076 3.870633 TCTTCCTCGAGTTCCTTAAGC 57.129 47.619 12.31 0.00 0.00 3.09
1076 1077 2.163815 TCTTCCTCGAGTTCCTTAAGCG 59.836 50.000 12.31 0.00 0.00 4.68
1077 1078 0.815734 TCCTCGAGTTCCTTAAGCGG 59.184 55.000 12.31 0.00 0.00 5.52
1078 1079 0.531200 CCTCGAGTTCCTTAAGCGGT 59.469 55.000 12.31 0.00 0.00 5.68
1079 1080 1.630148 CTCGAGTTCCTTAAGCGGTG 58.370 55.000 3.62 0.00 0.00 4.94
1080 1081 1.201647 CTCGAGTTCCTTAAGCGGTGA 59.798 52.381 3.62 0.00 0.00 4.02
1081 1082 1.201647 TCGAGTTCCTTAAGCGGTGAG 59.798 52.381 0.00 0.00 0.00 3.51
1082 1083 1.201647 CGAGTTCCTTAAGCGGTGAGA 59.798 52.381 0.00 0.00 0.00 3.27
1083 1084 2.608268 GAGTTCCTTAAGCGGTGAGAC 58.392 52.381 0.00 0.00 0.00 3.36
1084 1085 1.275573 AGTTCCTTAAGCGGTGAGACC 59.724 52.381 0.00 0.00 34.05 3.85
1085 1086 1.001633 GTTCCTTAAGCGGTGAGACCA 59.998 52.381 0.00 0.00 38.47 4.02
1086 1087 0.895530 TCCTTAAGCGGTGAGACCAG 59.104 55.000 0.00 0.00 38.47 4.00
1087 1088 0.741221 CCTTAAGCGGTGAGACCAGC 60.741 60.000 0.00 0.00 38.47 4.85
1114 1115 4.890306 GGCCCTCCTCTCCTCCCC 62.890 77.778 0.00 0.00 0.00 4.81
1115 1116 3.773154 GCCCTCCTCTCCTCCCCT 61.773 72.222 0.00 0.00 0.00 4.79
1116 1117 2.612251 CCCTCCTCTCCTCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
1117 1118 2.612251 CCTCCTCTCCTCCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1118 1119 2.328589 CCTCCTCTCCTCCCCTCCA 61.329 68.421 0.00 0.00 0.00 3.86
1119 1120 1.673928 CCTCCTCTCCTCCCCTCCAT 61.674 65.000 0.00 0.00 0.00 3.41
1120 1121 0.267356 CTCCTCTCCTCCCCTCCATT 59.733 60.000 0.00 0.00 0.00 3.16
1121 1122 0.725133 TCCTCTCCTCCCCTCCATTT 59.275 55.000 0.00 0.00 0.00 2.32
1122 1123 1.944588 TCCTCTCCTCCCCTCCATTTA 59.055 52.381 0.00 0.00 0.00 1.40
1123 1124 2.528813 TCCTCTCCTCCCCTCCATTTAT 59.471 50.000 0.00 0.00 0.00 1.40
1124 1125 3.738158 TCCTCTCCTCCCCTCCATTTATA 59.262 47.826 0.00 0.00 0.00 0.98
1125 1126 4.100373 CCTCTCCTCCCCTCCATTTATAG 58.900 52.174 0.00 0.00 0.00 1.31
1126 1127 4.100373 CTCTCCTCCCCTCCATTTATAGG 58.900 52.174 0.00 0.00 0.00 2.57
1165 1166 3.482436 TGTGTTTCATACCTTCGGCTTT 58.518 40.909 0.00 0.00 0.00 3.51
1174 1175 1.302192 CTTCGGCTTTTCGGGTCCA 60.302 57.895 0.00 0.00 0.00 4.02
1388 1389 8.788325 AGTTACTAGTACCCATTGATTTGTTC 57.212 34.615 0.91 0.00 0.00 3.18
1473 1489 2.622942 GTGCAAGAGGTTTGTGATGGAA 59.377 45.455 0.00 0.00 0.00 3.53
1633 1649 7.175119 TGAACCAATTAATCGTACAAATGTGGA 59.825 33.333 3.17 0.00 0.00 4.02
1634 1650 7.639113 ACCAATTAATCGTACAAATGTGGAT 57.361 32.000 3.17 0.00 0.00 3.41
1635 1651 8.062065 ACCAATTAATCGTACAAATGTGGATT 57.938 30.769 14.73 14.73 36.84 3.01
1640 1656 6.751514 AATCGTACAAATGTGGATTAAGCA 57.248 33.333 10.86 0.00 33.66 3.91
1769 1785 8.089115 AGTTGAAACTGCAGTCTAAATTCTAC 57.911 34.615 21.95 22.99 37.98 2.59
1777 1793 7.499232 ACTGCAGTCTAAATTCTACACACTTTT 59.501 33.333 15.25 0.00 0.00 2.27
1826 1842 0.680618 TCTTGGTGGCTGCCAATTTG 59.319 50.000 25.23 14.11 46.22 2.32
2019 2035 5.020132 AGCAGTTCAAGTATACTGAGGTCT 58.980 41.667 6.06 0.00 43.45 3.85
2020 2036 5.105554 AGCAGTTCAAGTATACTGAGGTCTG 60.106 44.000 6.06 12.11 43.45 3.51
2025 2041 7.670559 AGTTCAAGTATACTGAGGTCTGTACTT 59.329 37.037 6.06 0.52 34.01 2.24
2209 2229 5.396213 GCAGGAGACATCAAAAGAGATACCT 60.396 44.000 0.00 0.00 0.00 3.08
2587 2609 2.159393 GCGCACCATTTTCAGCAATAGA 60.159 45.455 0.30 0.00 0.00 1.98
2608 2630 4.166144 AGACTTTCCTCAGTTTTTCTCCCA 59.834 41.667 0.00 0.00 0.00 4.37
2877 2899 9.260002 CCAAGAAAAACATTGCAAGTACTTATT 57.740 29.630 8.04 2.26 0.00 1.40
2925 2951 5.699097 TGTTGGTTTAATGCCTGTCTTAC 57.301 39.130 0.00 0.00 0.00 2.34
3113 3145 8.746052 AAAAATGATCTTATATTGTGGGACGA 57.254 30.769 0.00 0.00 0.00 4.20
3351 3383 1.561542 CTCCTTATGCTCTTGGGTGGT 59.438 52.381 0.00 0.00 0.00 4.16
3515 3547 4.096833 TGTCTTGTGATGCTATTCAATGCC 59.903 41.667 0.00 0.00 0.00 4.40
3566 3598 5.709164 ACTGCTGCTTCTCAAGATAAATTGT 59.291 36.000 0.00 0.00 0.00 2.71
3619 3651 4.962362 TGAGATAAGGATGGCTCAGTGTAA 59.038 41.667 0.00 0.00 32.85 2.41
4240 4361 6.432162 TCATTTGCTTGATAGAAGTCTGCTTT 59.568 34.615 0.00 0.00 34.61 3.51
4403 4525 1.550524 CTGCTGGCTAGGTGTCACTTA 59.449 52.381 2.35 0.00 0.00 2.24
4583 4711 5.955961 ATTACTGCCCATGCCTTATTTTT 57.044 34.783 0.00 0.00 36.33 1.94
5027 5155 1.248486 GTGAAGAAGCACTTTCCCCC 58.752 55.000 0.00 0.00 39.13 5.40
5109 5237 4.044191 AGGTTTGCCCCTTAACTCAGTTAT 59.956 41.667 0.00 0.00 34.57 1.89
5135 5263 4.363991 AGGGAGCTTGGCTATTAATCAG 57.636 45.455 0.00 0.00 39.88 2.90
5329 5457 6.587608 CAGAAGCCATTTGGAAAGAATTGTAC 59.412 38.462 0.00 0.00 37.39 2.90
5364 5492 8.680001 GCATGCATATGTCAATATTAGGATTGA 58.320 33.333 14.21 0.00 37.79 2.57
5397 5525 1.388547 TGTTCTTGAAGCACCACCAC 58.611 50.000 0.00 0.00 0.00 4.16
5461 5589 3.065925 GGATCAACTTACAATCTGCCTGC 59.934 47.826 0.00 0.00 0.00 4.85
5485 5613 7.064847 TGCATTTACCTTGCATTGATTGATTTC 59.935 33.333 0.00 0.00 44.73 2.17
5490 5618 4.404715 CCTTGCATTGATTGATTTCCCTCT 59.595 41.667 0.00 0.00 0.00 3.69
5518 5646 6.458232 TTTGCTGCTAACTTCTTTTGGTAA 57.542 33.333 0.00 0.00 0.00 2.85
5743 5871 4.528920 TGATCATGATGATGAACAGCCAA 58.471 39.130 14.30 0.00 42.02 4.52
5773 5901 4.511527 AGATGCTACTCAACAAGATGGTG 58.488 43.478 0.00 0.00 36.12 4.17
5780 5908 0.599558 CAACAAGATGGTGCAGGTGG 59.400 55.000 0.00 0.00 0.00 4.61
5803 5931 9.010029 GTGGGTTTCTCACTATTTCTAAAATGA 57.990 33.333 0.00 0.00 32.78 2.57
5905 6035 5.123027 CCAGCAGAGGTGATTAAGAAGAAAC 59.877 44.000 0.00 0.00 32.22 2.78
5996 6126 6.097915 AGAATCAGTCAAGAAAGACGGTAA 57.902 37.500 0.00 0.00 43.24 2.85
6072 6210 2.240414 TCAGCAATCATGGTCACCTCAT 59.760 45.455 0.00 0.00 34.35 2.90
6157 6295 2.225467 GCCATGAGCCATCTAAACTCC 58.775 52.381 0.00 0.00 34.35 3.85
6417 6558 5.394553 GCTTGGAACTGGGAAATTTCATAGG 60.395 44.000 19.49 8.83 0.00 2.57
6489 6630 0.611896 ATACACTTGCCCCCACTTGC 60.612 55.000 0.00 0.00 0.00 4.01
6785 6926 5.391312 AAATTTCCGAGCTACTTGCATTT 57.609 34.783 0.00 0.00 45.94 2.32
6800 6941 6.463360 ACTTGCATTTTAAAAGGGTACATGG 58.537 36.000 13.92 3.76 0.00 3.66
6840 6986 6.852345 CCTTTGCATGTTTACTGAAATTTTGC 59.148 34.615 0.00 0.00 31.99 3.68
6890 7036 3.181526 GAGGGAAGGCCATCTTGTG 57.818 57.895 5.01 0.00 41.68 3.33
7075 7221 2.169832 ACGGAAGACATCCTGTTGTG 57.830 50.000 0.00 0.00 46.98 3.33
7076 7222 1.691976 ACGGAAGACATCCTGTTGTGA 59.308 47.619 0.00 0.00 46.98 3.58
7077 7223 2.303022 ACGGAAGACATCCTGTTGTGAT 59.697 45.455 0.00 0.00 46.98 3.06
7152 7300 7.986320 CACAAGATCTCTGGAATTGTATCTTCT 59.014 37.037 0.00 0.00 35.28 2.85
7194 7342 7.551585 TGGTAATTAATTTGCCACCAGTATTG 58.448 34.615 14.06 0.00 44.18 1.90
7195 7343 6.983890 GGTAATTAATTTGCCACCAGTATTGG 59.016 38.462 5.91 2.07 39.70 3.16
7206 7354 3.848272 CCAGTATTGGTTGCGTGAAAT 57.152 42.857 0.00 0.00 39.79 2.17
7207 7355 3.500982 CCAGTATTGGTTGCGTGAAATG 58.499 45.455 0.00 0.00 39.79 2.32
7208 7356 3.057596 CCAGTATTGGTTGCGTGAAATGT 60.058 43.478 0.00 0.00 39.79 2.71
7209 7357 4.155099 CCAGTATTGGTTGCGTGAAATGTA 59.845 41.667 0.00 0.00 39.79 2.29
7210 7358 5.323900 CAGTATTGGTTGCGTGAAATGTAG 58.676 41.667 0.00 0.00 0.00 2.74
7211 7359 3.848272 ATTGGTTGCGTGAAATGTAGG 57.152 42.857 0.00 0.00 0.00 3.18
7212 7360 1.529226 TGGTTGCGTGAAATGTAGGG 58.471 50.000 0.00 0.00 0.00 3.53
7213 7361 1.072489 TGGTTGCGTGAAATGTAGGGA 59.928 47.619 0.00 0.00 0.00 4.20
7214 7362 2.156098 GGTTGCGTGAAATGTAGGGAA 58.844 47.619 0.00 0.00 0.00 3.97
7215 7363 2.554893 GGTTGCGTGAAATGTAGGGAAA 59.445 45.455 0.00 0.00 0.00 3.13
7216 7364 3.365969 GGTTGCGTGAAATGTAGGGAAAG 60.366 47.826 0.00 0.00 0.00 2.62
7217 7365 2.432444 TGCGTGAAATGTAGGGAAAGG 58.568 47.619 0.00 0.00 0.00 3.11
7218 7366 1.132453 GCGTGAAATGTAGGGAAAGGC 59.868 52.381 0.00 0.00 0.00 4.35
7219 7367 2.711542 CGTGAAATGTAGGGAAAGGCT 58.288 47.619 0.00 0.00 0.00 4.58
7220 7368 2.420022 CGTGAAATGTAGGGAAAGGCTG 59.580 50.000 0.00 0.00 0.00 4.85
7221 7369 2.164422 GTGAAATGTAGGGAAAGGCTGC 59.836 50.000 0.00 0.00 0.00 5.25
7222 7370 2.224992 TGAAATGTAGGGAAAGGCTGCA 60.225 45.455 0.50 0.00 0.00 4.41
7223 7371 2.834638 AATGTAGGGAAAGGCTGCAT 57.165 45.000 0.50 0.00 0.00 3.96
7224 7372 3.951563 AATGTAGGGAAAGGCTGCATA 57.048 42.857 0.50 0.00 0.00 3.14
7225 7373 2.710096 TGTAGGGAAAGGCTGCATAC 57.290 50.000 0.50 0.00 33.66 2.39
7226 7374 2.196595 TGTAGGGAAAGGCTGCATACT 58.803 47.619 0.50 0.00 34.13 2.12
7227 7375 3.380393 TGTAGGGAAAGGCTGCATACTA 58.620 45.455 0.50 0.00 34.13 1.82
7228 7376 3.973973 TGTAGGGAAAGGCTGCATACTAT 59.026 43.478 0.50 0.00 34.13 2.12
7229 7377 5.152193 TGTAGGGAAAGGCTGCATACTATA 58.848 41.667 0.50 0.00 34.13 1.31
7230 7378 4.899352 AGGGAAAGGCTGCATACTATAG 57.101 45.455 0.50 0.00 0.00 1.31
7231 7379 4.493618 AGGGAAAGGCTGCATACTATAGA 58.506 43.478 6.78 0.00 0.00 1.98
7232 7380 4.284746 AGGGAAAGGCTGCATACTATAGAC 59.715 45.833 6.78 0.00 0.00 2.59
7233 7381 4.563786 GGGAAAGGCTGCATACTATAGACC 60.564 50.000 6.78 0.00 0.00 3.85
7234 7382 4.284746 GGAAAGGCTGCATACTATAGACCT 59.715 45.833 6.78 0.00 0.00 3.85
7235 7383 5.480772 GGAAAGGCTGCATACTATAGACCTA 59.519 44.000 6.78 0.00 0.00 3.08
7236 7384 6.014499 GGAAAGGCTGCATACTATAGACCTAA 60.014 42.308 6.78 0.00 0.00 2.69
7237 7385 6.996180 AAGGCTGCATACTATAGACCTAAA 57.004 37.500 6.78 0.00 0.00 1.85
7238 7386 6.597832 AGGCTGCATACTATAGACCTAAAG 57.402 41.667 6.78 0.00 0.00 1.85
7239 7387 6.078664 AGGCTGCATACTATAGACCTAAAGT 58.921 40.000 6.78 0.00 0.00 2.66
7240 7388 6.015010 AGGCTGCATACTATAGACCTAAAGTG 60.015 42.308 6.78 0.00 0.00 3.16
7241 7389 6.159988 GCTGCATACTATAGACCTAAAGTGG 58.840 44.000 6.78 0.00 0.00 4.00
7242 7390 6.239345 GCTGCATACTATAGACCTAAAGTGGT 60.239 42.308 6.78 0.00 44.10 4.16
7248 7396 3.828657 GACCTAAAGTGGTCGGACC 57.171 57.895 20.36 20.36 45.69 4.46
7249 7397 0.248565 GACCTAAAGTGGTCGGACCC 59.751 60.000 23.81 14.91 45.69 4.46
7250 7398 0.178912 ACCTAAAGTGGTCGGACCCT 60.179 55.000 23.81 16.82 37.50 4.34
7251 7399 0.981943 CCTAAAGTGGTCGGACCCTT 59.018 55.000 23.81 21.08 37.50 3.95
7252 7400 1.066358 CCTAAAGTGGTCGGACCCTTC 60.066 57.143 23.81 13.97 37.50 3.46
7253 7401 0.978907 TAAAGTGGTCGGACCCTTCC 59.021 55.000 23.81 9.51 37.50 3.46
7254 7402 0.767060 AAAGTGGTCGGACCCTTCCT 60.767 55.000 23.81 11.53 40.23 3.36
7255 7403 0.767060 AAGTGGTCGGACCCTTCCTT 60.767 55.000 23.81 16.21 40.23 3.36
7256 7404 1.003718 GTGGTCGGACCCTTCCTTG 60.004 63.158 23.81 0.00 40.23 3.61
7257 7405 2.221299 TGGTCGGACCCTTCCTTGG 61.221 63.158 23.81 0.00 40.23 3.61
7258 7406 1.916777 GGTCGGACCCTTCCTTGGA 60.917 63.158 16.55 0.00 40.23 3.53
7259 7407 1.295746 GTCGGACCCTTCCTTGGAC 59.704 63.158 0.00 0.00 40.23 4.02
7260 7408 1.916777 TCGGACCCTTCCTTGGACC 60.917 63.158 0.00 0.00 40.23 4.46
7261 7409 2.967946 CGGACCCTTCCTTGGACCC 61.968 68.421 0.00 0.00 40.23 4.46
7262 7410 1.541620 GGACCCTTCCTTGGACCCT 60.542 63.158 0.00 0.00 39.13 4.34
7263 7411 1.685820 GACCCTTCCTTGGACCCTG 59.314 63.158 0.00 0.00 0.00 4.45
7264 7412 2.356667 CCCTTCCTTGGACCCTGC 59.643 66.667 0.00 0.00 0.00 4.85
7265 7413 2.045926 CCTTCCTTGGACCCTGCG 60.046 66.667 0.00 0.00 0.00 5.18
7266 7414 2.747855 CTTCCTTGGACCCTGCGC 60.748 66.667 0.00 0.00 0.00 6.09
7267 7415 3.551496 CTTCCTTGGACCCTGCGCA 62.551 63.158 10.98 10.98 0.00 6.09
7268 7416 3.126703 TTCCTTGGACCCTGCGCAA 62.127 57.895 13.05 0.00 0.00 4.85
7269 7417 3.058160 CCTTGGACCCTGCGCAAG 61.058 66.667 13.05 4.91 43.44 4.01
7291 7439 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
7292 7440 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
7293 7441 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
7294 7442 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
7295 7443 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
7296 7444 2.779742 TACATGCACCAGGTTGCCCC 62.780 60.000 10.46 0.00 42.25 5.80
7297 7445 4.702274 ATGCACCAGGTTGCCCCC 62.702 66.667 10.46 0.00 42.25 5.40
7320 7468 2.952978 TGTTGGTTGCGTATTTTCCACT 59.047 40.909 0.00 0.00 0.00 4.00
7338 7486 7.447374 TTCCACTGTTTCATGGTTATGTAAG 57.553 36.000 0.00 0.00 37.27 2.34
7410 7558 6.471233 TCTAAGCTTTGCTCTCAGCTATTA 57.529 37.500 3.20 0.00 46.01 0.98
7445 7593 3.641436 ACGGCCTACAGATGTCATAATGA 59.359 43.478 0.00 0.00 0.00 2.57
7533 7689 4.151689 CCATCGTTGACTCGTTGTACATTT 59.848 41.667 0.00 0.00 0.00 2.32
7568 7724 4.201950 CCAAATCCGCTTCAGTAAGAATGG 60.202 45.833 0.00 0.00 35.25 3.16
7569 7725 4.487714 AATCCGCTTCAGTAAGAATGGA 57.512 40.909 0.00 0.00 41.85 3.41
7571 7727 1.927174 CCGCTTCAGTAAGAATGGACG 59.073 52.381 0.00 0.00 34.98 4.79
7572 7728 2.607187 CGCTTCAGTAAGAATGGACGT 58.393 47.619 0.00 0.00 35.25 4.34
7573 7729 3.428452 CCGCTTCAGTAAGAATGGACGTA 60.428 47.826 0.00 0.00 34.98 3.57
7574 7730 3.546670 CGCTTCAGTAAGAATGGACGTAC 59.453 47.826 0.00 0.00 35.25 3.67
7575 7731 3.546670 GCTTCAGTAAGAATGGACGTACG 59.453 47.826 15.01 15.01 35.25 3.67
7576 7732 4.673580 GCTTCAGTAAGAATGGACGTACGA 60.674 45.833 24.41 0.00 35.25 3.43
7592 7847 5.766222 ACGTACGATTTAGTGTCACTCTTT 58.234 37.500 24.41 0.00 0.00 2.52
7625 7970 8.875168 TCAATAATTTTCAAACCCCACATAGTT 58.125 29.630 0.00 0.00 0.00 2.24
7630 7975 3.934457 CAAACCCCACATAGTTTGGAC 57.066 47.619 7.55 0.00 45.78 4.02
7792 8140 7.157347 TCTATTAGCTGCAGATTGTAATCCTG 58.843 38.462 20.43 3.03 36.04 3.86
7823 8171 6.844097 TTAATAAAGCTCCCGGTTTTCAAT 57.156 33.333 0.00 0.00 40.88 2.57
7936 8312 1.900351 CATGGGAAGACGAGAGGCA 59.100 57.895 0.00 0.00 46.78 4.75
7952 8328 1.613630 GCAGAGGGTGAAGGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
7961 8337 1.488393 GTGAAGGGAGGAATGAGGAGG 59.512 57.143 0.00 0.00 0.00 4.30
7962 8338 0.472044 GAAGGGAGGAATGAGGAGGC 59.528 60.000 0.00 0.00 0.00 4.70
7963 8339 1.341156 AAGGGAGGAATGAGGAGGCG 61.341 60.000 0.00 0.00 0.00 5.52
7964 8340 2.812619 GGGAGGAATGAGGAGGCGG 61.813 68.421 0.00 0.00 0.00 6.13
7965 8341 2.110006 GAGGAATGAGGAGGCGGC 59.890 66.667 0.00 0.00 0.00 6.53
7966 8342 3.798954 GAGGAATGAGGAGGCGGCG 62.799 68.421 0.51 0.51 0.00 6.46
7967 8343 3.849951 GGAATGAGGAGGCGGCGA 61.850 66.667 12.98 0.00 0.00 5.54
7968 8344 2.586357 GAATGAGGAGGCGGCGAC 60.586 66.667 12.98 8.50 0.00 5.19
7969 8345 3.371097 GAATGAGGAGGCGGCGACA 62.371 63.158 18.30 0.00 0.00 4.35
7970 8346 2.852495 GAATGAGGAGGCGGCGACAA 62.852 60.000 18.30 0.00 0.00 3.18
7971 8347 2.463589 AATGAGGAGGCGGCGACAAA 62.464 55.000 18.30 0.00 0.00 2.83
7972 8348 2.815647 GAGGAGGCGGCGACAAAG 60.816 66.667 18.30 0.00 0.00 2.77
7973 8349 3.296709 GAGGAGGCGGCGACAAAGA 62.297 63.158 18.30 0.00 0.00 2.52
7974 8350 2.125106 GGAGGCGGCGACAAAGAT 60.125 61.111 18.30 0.00 0.00 2.40
7975 8351 2.464459 GGAGGCGGCGACAAAGATG 61.464 63.158 18.30 0.00 0.00 2.90
7976 8352 2.436646 AGGCGGCGACAAAGATGG 60.437 61.111 18.30 0.00 0.00 3.51
7977 8353 2.435938 GGCGGCGACAAAGATGGA 60.436 61.111 12.98 0.00 0.00 3.41
7978 8354 2.464459 GGCGGCGACAAAGATGGAG 61.464 63.158 12.98 0.00 0.00 3.86
7979 8355 1.741770 GCGGCGACAAAGATGGAGT 60.742 57.895 12.98 0.00 0.00 3.85
7980 8356 1.970917 GCGGCGACAAAGATGGAGTG 61.971 60.000 12.98 0.00 0.00 3.51
7981 8357 1.796796 GGCGACAAAGATGGAGTGC 59.203 57.895 0.00 0.00 0.00 4.40
7982 8358 0.674895 GGCGACAAAGATGGAGTGCT 60.675 55.000 0.00 0.00 0.00 4.40
7983 8359 0.723981 GCGACAAAGATGGAGTGCTC 59.276 55.000 0.00 0.00 0.00 4.26
7984 8360 0.994995 CGACAAAGATGGAGTGCTCG 59.005 55.000 0.00 0.00 0.00 5.03
7985 8361 0.723981 GACAAAGATGGAGTGCTCGC 59.276 55.000 0.00 0.00 0.00 5.03
7986 8362 0.674895 ACAAAGATGGAGTGCTCGCC 60.675 55.000 1.11 1.11 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.193514 CAAAATTGCAAGTTTTGGTCCTTT 57.806 33.333 21.27 1.98 40.88 3.11
1 2 5.816449 CAAAATTGCAAGTTTTGGTCCTT 57.184 34.783 21.27 0.00 40.88 3.36
7 8 2.286891 CGGCCCAAAATTGCAAGTTTTG 60.287 45.455 21.27 23.47 43.00 2.44
8 9 1.946081 CGGCCCAAAATTGCAAGTTTT 59.054 42.857 21.27 15.52 0.00 2.43
9 10 1.592064 CGGCCCAAAATTGCAAGTTT 58.408 45.000 18.47 18.47 0.00 2.66
10 11 0.250252 CCGGCCCAAAATTGCAAGTT 60.250 50.000 6.26 6.26 0.00 2.66
11 12 1.370810 CCGGCCCAAAATTGCAAGT 59.629 52.632 4.94 0.00 0.00 3.16
12 13 2.034317 GCCGGCCCAAAATTGCAAG 61.034 57.895 18.11 0.00 0.00 4.01
13 14 2.031768 GCCGGCCCAAAATTGCAA 59.968 55.556 18.11 0.00 0.00 4.08
14 15 4.014108 GGCCGGCCCAAAATTGCA 62.014 61.111 36.64 0.00 0.00 4.08
26 27 2.964438 TATACTTTGCGAGCGGCCGG 62.964 60.000 29.38 11.90 42.61 6.13
27 28 1.548973 CTATACTTTGCGAGCGGCCG 61.549 60.000 24.05 24.05 42.61 6.13
28 29 0.529992 ACTATACTTTGCGAGCGGCC 60.530 55.000 0.00 0.00 42.61 6.13
29 30 0.577269 CACTATACTTTGCGAGCGGC 59.423 55.000 0.00 0.00 43.96 6.53
30 31 2.120232 CTCACTATACTTTGCGAGCGG 58.880 52.381 0.00 0.00 0.00 5.52
31 32 1.518929 GCTCACTATACTTTGCGAGCG 59.481 52.381 0.00 0.00 36.84 5.03
32 33 2.537625 CTGCTCACTATACTTTGCGAGC 59.462 50.000 0.00 0.00 44.75 5.03
33 34 2.537625 GCTGCTCACTATACTTTGCGAG 59.462 50.000 0.00 0.00 0.00 5.03
34 35 2.540515 GCTGCTCACTATACTTTGCGA 58.459 47.619 0.00 0.00 0.00 5.10
35 36 1.594862 GGCTGCTCACTATACTTTGCG 59.405 52.381 0.00 0.00 0.00 4.85
36 37 1.594862 CGGCTGCTCACTATACTTTGC 59.405 52.381 0.00 0.00 0.00 3.68
37 38 2.205074 CCGGCTGCTCACTATACTTTG 58.795 52.381 0.00 0.00 0.00 2.77
38 39 1.831736 ACCGGCTGCTCACTATACTTT 59.168 47.619 0.00 0.00 0.00 2.66
39 40 1.409427 GACCGGCTGCTCACTATACTT 59.591 52.381 0.00 0.00 0.00 2.24
40 41 1.033574 GACCGGCTGCTCACTATACT 58.966 55.000 0.00 0.00 0.00 2.12
41 42 0.317938 CGACCGGCTGCTCACTATAC 60.318 60.000 0.00 0.00 0.00 1.47
42 43 2.030551 CGACCGGCTGCTCACTATA 58.969 57.895 0.00 0.00 0.00 1.31
43 44 2.808315 CGACCGGCTGCTCACTAT 59.192 61.111 0.00 0.00 0.00 2.12
44 45 4.129737 GCGACCGGCTGCTCACTA 62.130 66.667 11.04 0.00 39.11 2.74
53 54 4.908877 GTCTAGCGAGCGACCGGC 62.909 72.222 0.00 0.00 44.05 6.13
54 55 4.253257 GGTCTAGCGAGCGACCGG 62.253 72.222 0.00 0.00 40.18 5.28
60 61 2.221906 TTTGGACCGGTCTAGCGAGC 62.222 60.000 32.52 15.47 0.00 5.03
61 62 0.245539 TTTTGGACCGGTCTAGCGAG 59.754 55.000 32.52 0.00 0.00 5.03
62 63 0.037975 GTTTTGGACCGGTCTAGCGA 60.038 55.000 32.52 14.40 0.00 4.93
63 64 0.320073 TGTTTTGGACCGGTCTAGCG 60.320 55.000 32.52 0.00 0.00 4.26
64 65 1.886886 TTGTTTTGGACCGGTCTAGC 58.113 50.000 32.52 20.21 0.00 3.42
65 66 4.577283 TCTTTTTGTTTTGGACCGGTCTAG 59.423 41.667 32.52 12.61 0.00 2.43
66 67 4.336153 GTCTTTTTGTTTTGGACCGGTCTA 59.664 41.667 32.52 25.88 0.00 2.59
67 68 3.129813 GTCTTTTTGTTTTGGACCGGTCT 59.870 43.478 32.52 0.00 0.00 3.85
68 69 3.129813 AGTCTTTTTGTTTTGGACCGGTC 59.870 43.478 27.04 27.04 0.00 4.79
69 70 3.093814 AGTCTTTTTGTTTTGGACCGGT 58.906 40.909 6.92 6.92 0.00 5.28
70 71 3.490249 GGAGTCTTTTTGTTTTGGACCGG 60.490 47.826 0.00 0.00 0.00 5.28
71 72 3.490249 GGGAGTCTTTTTGTTTTGGACCG 60.490 47.826 0.00 0.00 0.00 4.79
72 73 3.181469 GGGGAGTCTTTTTGTTTTGGACC 60.181 47.826 0.00 0.00 0.00 4.46
73 74 3.704566 AGGGGAGTCTTTTTGTTTTGGAC 59.295 43.478 0.00 0.00 0.00 4.02
74 75 3.704061 CAGGGGAGTCTTTTTGTTTTGGA 59.296 43.478 0.00 0.00 0.00 3.53
75 76 3.741075 GCAGGGGAGTCTTTTTGTTTTGG 60.741 47.826 0.00 0.00 0.00 3.28
76 77 3.118811 TGCAGGGGAGTCTTTTTGTTTTG 60.119 43.478 0.00 0.00 0.00 2.44
77 78 3.103742 TGCAGGGGAGTCTTTTTGTTTT 58.896 40.909 0.00 0.00 0.00 2.43
78 79 2.430694 GTGCAGGGGAGTCTTTTTGTTT 59.569 45.455 0.00 0.00 0.00 2.83
79 80 2.031870 GTGCAGGGGAGTCTTTTTGTT 58.968 47.619 0.00 0.00 0.00 2.83
80 81 1.692411 GTGCAGGGGAGTCTTTTTGT 58.308 50.000 0.00 0.00 0.00 2.83
81 82 0.593128 CGTGCAGGGGAGTCTTTTTG 59.407 55.000 0.00 0.00 0.00 2.44
82 83 0.537371 CCGTGCAGGGGAGTCTTTTT 60.537 55.000 17.92 0.00 35.97 1.94
83 84 1.073199 CCGTGCAGGGGAGTCTTTT 59.927 57.895 17.92 0.00 35.97 2.27
84 85 2.147387 ACCGTGCAGGGGAGTCTTT 61.147 57.895 28.01 3.47 46.96 2.52
85 86 2.526873 ACCGTGCAGGGGAGTCTT 60.527 61.111 28.01 4.24 46.96 3.01
123 124 1.203523 GAGGAGAACATGAGCGAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
125 126 1.550327 TGAGGAGAACATGAGCGAGT 58.450 50.000 0.00 0.00 0.00 4.18
165 166 2.671963 GTGCACCGTTTCCTCCCC 60.672 66.667 5.22 0.00 0.00 4.81
171 172 2.589442 TGGTCCGTGCACCGTTTC 60.589 61.111 12.15 0.00 39.62 2.78
195 196 0.537371 AGGAAGGGTTGCCGTTTCTG 60.537 55.000 1.04 0.00 36.07 3.02
202 203 2.356667 CCTGGAGGAAGGGTTGCC 59.643 66.667 0.00 0.00 37.39 4.52
203 204 2.361737 GCCTGGAGGAAGGGTTGC 60.362 66.667 0.00 0.00 37.84 4.17
291 292 1.685765 GGTTGGGGATGAAAGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
975 976 2.032620 GGCGAACCTTCTGGATCTAGA 58.967 52.381 4.39 4.39 33.52 2.43
976 977 1.269309 CGGCGAACCTTCTGGATCTAG 60.269 57.143 0.00 0.00 33.52 2.43
977 978 0.744874 CGGCGAACCTTCTGGATCTA 59.255 55.000 0.00 0.00 33.52 1.98
978 979 1.517832 CGGCGAACCTTCTGGATCT 59.482 57.895 0.00 0.00 33.52 2.75
979 980 1.521681 CCGGCGAACCTTCTGGATC 60.522 63.158 9.30 0.00 37.04 3.36
980 981 2.584608 CCGGCGAACCTTCTGGAT 59.415 61.111 9.30 0.00 37.04 3.41
981 982 4.388499 GCCGGCGAACCTTCTGGA 62.388 66.667 12.58 0.00 37.04 3.86
983 984 3.976701 ATGGCCGGCGAACCTTCTG 62.977 63.158 22.54 0.00 0.00 3.02
984 985 3.717294 ATGGCCGGCGAACCTTCT 61.717 61.111 22.54 0.00 0.00 2.85
985 986 3.508840 CATGGCCGGCGAACCTTC 61.509 66.667 22.54 4.79 0.00 3.46
1006 1007 4.148645 GAAGAAGCCGCCGAACGC 62.149 66.667 0.00 0.00 41.76 4.84
1007 1008 3.838795 CGAAGAAGCCGCCGAACG 61.839 66.667 0.00 0.00 43.15 3.95
1008 1009 2.737376 ACGAAGAAGCCGCCGAAC 60.737 61.111 0.00 0.00 0.00 3.95
1009 1010 2.736995 CACGAAGAAGCCGCCGAA 60.737 61.111 0.00 0.00 0.00 4.30
1010 1011 4.735132 CCACGAAGAAGCCGCCGA 62.735 66.667 0.00 0.00 0.00 5.54
1011 1012 4.735132 TCCACGAAGAAGCCGCCG 62.735 66.667 0.00 0.00 0.00 6.46
1012 1013 3.119096 GTCCACGAAGAAGCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
1013 1014 3.479269 CGTCCACGAAGAAGCCGC 61.479 66.667 0.00 0.00 43.02 6.53
1014 1015 2.257371 TCGTCCACGAAGAAGCCG 59.743 61.111 0.00 0.00 46.30 5.52
1038 1039 2.740714 GATGTTCTCCACACGCGCC 61.741 63.158 5.73 0.00 38.61 6.53
1039 1040 1.291877 AAGATGTTCTCCACACGCGC 61.292 55.000 5.73 0.00 38.61 6.86
1040 1041 0.716108 GAAGATGTTCTCCACACGCG 59.284 55.000 3.53 3.53 38.61 6.01
1041 1042 1.079503 GGAAGATGTTCTCCACACGC 58.920 55.000 2.24 0.00 38.61 5.34
1042 1043 2.611518 GAGGAAGATGTTCTCCACACG 58.388 52.381 2.24 0.00 38.61 4.49
1043 1044 2.231478 TCGAGGAAGATGTTCTCCACAC 59.769 50.000 2.24 0.00 38.61 3.82
1044 1045 2.493675 CTCGAGGAAGATGTTCTCCACA 59.506 50.000 3.91 0.00 40.71 4.17
1045 1046 2.494073 ACTCGAGGAAGATGTTCTCCAC 59.506 50.000 18.41 0.00 32.72 4.02
1046 1047 2.808919 ACTCGAGGAAGATGTTCTCCA 58.191 47.619 18.41 0.00 32.72 3.86
1047 1048 3.429684 GGAACTCGAGGAAGATGTTCTCC 60.430 52.174 18.41 3.04 37.66 3.71
1048 1049 3.445805 AGGAACTCGAGGAAGATGTTCTC 59.554 47.826 18.41 4.94 37.66 2.87
1049 1050 3.436243 AGGAACTCGAGGAAGATGTTCT 58.564 45.455 18.41 0.00 37.66 3.01
1050 1051 3.878160 AGGAACTCGAGGAAGATGTTC 57.122 47.619 18.41 9.94 37.04 3.18
1051 1052 5.725362 CTTAAGGAACTCGAGGAAGATGTT 58.275 41.667 18.41 0.00 38.49 2.71
1052 1053 4.382147 GCTTAAGGAACTCGAGGAAGATGT 60.382 45.833 18.41 0.00 38.49 3.06
1053 1054 4.116238 GCTTAAGGAACTCGAGGAAGATG 58.884 47.826 18.41 1.11 38.49 2.90
1054 1055 3.181485 CGCTTAAGGAACTCGAGGAAGAT 60.181 47.826 18.41 2.45 38.49 2.40
1055 1056 2.163815 CGCTTAAGGAACTCGAGGAAGA 59.836 50.000 18.41 0.00 38.49 2.87
1056 1057 2.531206 CGCTTAAGGAACTCGAGGAAG 58.469 52.381 18.41 10.48 38.49 3.46
1057 1058 1.203994 CCGCTTAAGGAACTCGAGGAA 59.796 52.381 18.41 0.13 38.49 3.36
1058 1059 0.815734 CCGCTTAAGGAACTCGAGGA 59.184 55.000 18.41 0.00 38.49 3.71
1059 1060 0.531200 ACCGCTTAAGGAACTCGAGG 59.469 55.000 18.41 0.00 38.49 4.63
1060 1061 1.201647 TCACCGCTTAAGGAACTCGAG 59.798 52.381 11.84 11.84 38.49 4.04
1061 1062 1.201647 CTCACCGCTTAAGGAACTCGA 59.798 52.381 4.29 0.00 38.49 4.04
1062 1063 1.201647 TCTCACCGCTTAAGGAACTCG 59.798 52.381 4.29 0.00 38.49 4.18
1063 1064 2.608268 GTCTCACCGCTTAAGGAACTC 58.392 52.381 4.29 0.00 38.49 3.01
1064 1065 3.348347 TGGTCTCACCGCTTAAGGAACT 61.348 50.000 4.29 0.00 42.58 3.01
1065 1066 1.001633 TGGTCTCACCGCTTAAGGAAC 59.998 52.381 4.29 0.00 42.58 3.62
1066 1067 1.275291 CTGGTCTCACCGCTTAAGGAA 59.725 52.381 4.29 0.00 42.58 3.36
1067 1068 0.895530 CTGGTCTCACCGCTTAAGGA 59.104 55.000 4.29 0.00 42.58 3.36
1068 1069 0.741221 GCTGGTCTCACCGCTTAAGG 60.741 60.000 4.29 0.00 42.58 2.69
1069 1070 1.078759 CGCTGGTCTCACCGCTTAAG 61.079 60.000 0.00 0.00 42.58 1.85
1070 1071 1.080093 CGCTGGTCTCACCGCTTAA 60.080 57.895 7.56 0.00 42.58 1.85
1071 1072 2.571757 CGCTGGTCTCACCGCTTA 59.428 61.111 7.56 0.00 42.58 3.09
1097 1098 4.890306 GGGGAGGAGAGGAGGGCC 62.890 77.778 0.00 0.00 0.00 5.80
1098 1099 3.767044 GAGGGGAGGAGAGGAGGGC 62.767 73.684 0.00 0.00 0.00 5.19
1099 1100 2.612251 GAGGGGAGGAGAGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
1100 1101 1.673928 ATGGAGGGGAGGAGAGGAGG 61.674 65.000 0.00 0.00 0.00 4.30
1101 1102 0.267356 AATGGAGGGGAGGAGAGGAG 59.733 60.000 0.00 0.00 0.00 3.69
1102 1103 0.725133 AAATGGAGGGGAGGAGAGGA 59.275 55.000 0.00 0.00 0.00 3.71
1103 1104 2.496679 TAAATGGAGGGGAGGAGAGG 57.503 55.000 0.00 0.00 0.00 3.69
1104 1105 4.100373 CCTATAAATGGAGGGGAGGAGAG 58.900 52.174 0.00 0.00 0.00 3.20
1105 1106 4.147667 CCTATAAATGGAGGGGAGGAGA 57.852 50.000 0.00 0.00 0.00 3.71
1113 1114 5.646692 TGAGGAAACCCTATAAATGGAGG 57.353 43.478 0.00 0.00 33.25 4.30
1114 1115 6.006449 CCATGAGGAAACCCTATAAATGGAG 58.994 44.000 0.00 0.00 35.13 3.86
1115 1116 5.435041 ACCATGAGGAAACCCTATAAATGGA 59.565 40.000 15.76 0.00 35.87 3.41
1116 1117 5.705400 ACCATGAGGAAACCCTATAAATGG 58.295 41.667 0.00 0.00 37.04 3.16
1117 1118 5.770162 GGACCATGAGGAAACCCTATAAATG 59.230 44.000 0.00 0.00 38.69 2.32
1118 1119 5.676811 AGGACCATGAGGAAACCCTATAAAT 59.323 40.000 0.00 0.00 38.69 1.40
1119 1120 5.043762 AGGACCATGAGGAAACCCTATAAA 58.956 41.667 0.00 0.00 38.69 1.40
1120 1121 4.641868 AGGACCATGAGGAAACCCTATAA 58.358 43.478 0.00 0.00 38.69 0.98
1121 1122 4.077982 AGAGGACCATGAGGAAACCCTATA 60.078 45.833 0.00 0.00 38.69 1.31
1122 1123 3.049344 GAGGACCATGAGGAAACCCTAT 58.951 50.000 0.00 0.00 38.69 2.57
1123 1124 2.045885 AGAGGACCATGAGGAAACCCTA 59.954 50.000 0.00 0.00 38.69 3.53
1124 1125 1.203492 AGAGGACCATGAGGAAACCCT 60.203 52.381 0.00 0.00 38.69 4.34
1125 1126 1.065126 CAGAGGACCATGAGGAAACCC 60.065 57.143 0.00 0.00 38.69 4.11
1126 1127 1.630878 ACAGAGGACCATGAGGAAACC 59.369 52.381 0.00 0.00 38.69 3.27
1127 1128 2.039084 ACACAGAGGACCATGAGGAAAC 59.961 50.000 0.00 0.00 38.69 2.78
1165 1166 1.557832 CCTTGAACCTATGGACCCGAA 59.442 52.381 0.00 0.00 0.00 4.30
1174 1175 1.417890 CATCCGGCTCCTTGAACCTAT 59.582 52.381 0.00 0.00 0.00 2.57
1208 1209 2.552743 CGCCTCCATCTCTACATCGTAA 59.447 50.000 0.00 0.00 0.00 3.18
1388 1389 3.052036 CCATGAGCAAAACAAACGAAGG 58.948 45.455 0.00 0.00 0.00 3.46
1473 1489 1.005630 GTTCTCGCCAGCTCTGTGT 60.006 57.895 0.00 0.00 0.00 3.72
1750 1766 6.525629 AGTGTGTAGAATTTAGACTGCAGTT 58.474 36.000 22.65 13.26 30.39 3.16
1769 1785 8.037758 ACCTATGATCTAACAGAGAAAAGTGTG 58.962 37.037 0.00 0.00 37.85 3.82
2019 2035 9.706691 CTAACAGAAGATAAGGTTGAAAGTACA 57.293 33.333 0.00 0.00 0.00 2.90
2020 2036 9.708092 ACTAACAGAAGATAAGGTTGAAAGTAC 57.292 33.333 0.00 0.00 0.00 2.73
2587 2609 4.519906 TGGGAGAAAAACTGAGGAAAGT 57.480 40.909 0.00 0.00 0.00 2.66
2925 2951 7.707464 TGGTATGCATGCTCAAATGAAAAATAG 59.293 33.333 20.33 0.00 0.00 1.73
3206 3238 4.081365 CCTCCTCCTCTTCCTGTTAAAGAC 60.081 50.000 0.00 0.00 0.00 3.01
3294 3326 5.756195 TTTCTTGATGACCAAAGACAGTG 57.244 39.130 0.00 0.00 33.76 3.66
3351 3383 5.048782 GCCTTCATGTGTTATCTTGTGAACA 60.049 40.000 0.00 0.00 33.23 3.18
3426 3458 8.736244 ACTTACTTTAAAAACTGAGACTTTGCA 58.264 29.630 0.00 0.00 0.00 4.08
3492 3524 4.096833 GGCATTGAATAGCATCACAAGACA 59.903 41.667 0.00 0.00 0.00 3.41
3493 3525 4.096833 TGGCATTGAATAGCATCACAAGAC 59.903 41.667 0.00 0.00 0.00 3.01
3494 3526 4.271661 TGGCATTGAATAGCATCACAAGA 58.728 39.130 0.00 0.00 0.00 3.02
3496 3528 4.645588 TCATGGCATTGAATAGCATCACAA 59.354 37.500 0.00 0.00 0.00 3.33
3515 3547 7.542890 ACGAGTTTATATAGCCAGAGATCATG 58.457 38.462 0.00 0.00 0.00 3.07
3538 3570 2.677199 TCTTGAGAAGCAGCAGTAACG 58.323 47.619 0.00 0.00 0.00 3.18
3583 3615 8.272889 CCATCCTTATCTCATGGTCATGATATT 58.727 37.037 13.26 5.28 45.74 1.28
3959 4074 3.554934 AGCATCAAGTCACAGGACAAAA 58.445 40.909 0.00 0.00 46.80 2.44
4158 4273 9.928618 TTGTGGTAATTATAGAAATGGATTGGA 57.071 29.630 0.00 0.00 0.00 3.53
4273 4395 9.298250 ACTTGTACATATACGGTATGATCTCTT 57.702 33.333 10.86 0.00 33.60 2.85
4836 4964 9.605275 TTAGATTCAACGAAGATCTCATGATTT 57.395 29.630 0.00 0.00 32.19 2.17
4895 5023 2.293170 GAAAGAATGGCTGGAGGTAGC 58.707 52.381 0.00 0.00 42.94 3.58
5027 5155 2.838386 ATTCTGCAGTGCTAAATGCG 57.162 45.000 17.60 0.00 45.54 4.73
5109 5237 3.456380 AATAGCCAAGCTCCCTTTTCA 57.544 42.857 0.00 0.00 40.44 2.69
5329 5457 6.809297 TTGACATATGCATGCAATTTAACG 57.191 33.333 26.68 11.30 35.39 3.18
5364 5492 5.581126 TCAAGAACAAAACTGCAGACAAT 57.419 34.783 23.35 0.59 0.00 2.71
5461 5589 7.011669 GGGAAATCAATCAATGCAAGGTAAATG 59.988 37.037 0.00 0.00 0.00 2.32
5485 5613 6.995091 AGAAGTTAGCAGCAAATTATAGAGGG 59.005 38.462 0.00 0.00 0.00 4.30
5490 5618 8.802267 ACCAAAAGAAGTTAGCAGCAAATTATA 58.198 29.630 0.00 0.00 0.00 0.98
5743 5871 5.939764 TGTTGAGTAGCATCTCCTTGTAT 57.060 39.130 5.87 0.00 33.93 2.29
5773 5901 2.789409 ATAGTGAGAAACCCACCTGC 57.211 50.000 0.00 0.00 35.23 4.85
5803 5931 8.397148 CAAAACAAACTGAGCAAAACCAATATT 58.603 29.630 0.00 0.00 0.00 1.28
5844 5974 2.791383 TGACATTGAAAACAAGCGGG 57.209 45.000 0.00 0.00 0.00 6.13
5905 6035 8.335532 TGGAAATGTTCTTCAGTAATAACCAG 57.664 34.615 0.00 0.00 0.00 4.00
6157 6295 6.503589 ACTGTAGCTAGAGTGTAAGTGAAG 57.496 41.667 21.83 0.00 0.00 3.02
6773 6914 6.683715 TGTACCCTTTTAAAATGCAAGTAGC 58.316 36.000 0.09 0.00 45.96 3.58
6785 6926 4.390129 TGCCTTCCATGTACCCTTTTAA 57.610 40.909 0.00 0.00 0.00 1.52
6800 6941 4.199310 TGCAAAGGACACTATATGCCTTC 58.801 43.478 0.00 0.00 41.30 3.46
6840 6986 2.475466 GCAGATGCACACCCATCGG 61.475 63.158 0.00 0.00 44.86 4.18
6890 7036 3.126831 CGCTGTTCCTTCATCTATGACC 58.873 50.000 0.00 0.00 36.36 4.02
7077 7223 9.929180 GGTACAACATATCATTTCTAGAGCATA 57.071 33.333 0.00 0.00 0.00 3.14
7152 7300 3.094484 ACCACACTTCAACCTTGGAAA 57.906 42.857 0.00 0.00 0.00 3.13
7194 7342 1.816074 TCCCTACATTTCACGCAACC 58.184 50.000 0.00 0.00 0.00 3.77
7195 7343 3.365969 CCTTTCCCTACATTTCACGCAAC 60.366 47.826 0.00 0.00 0.00 4.17
7196 7344 2.817258 CCTTTCCCTACATTTCACGCAA 59.183 45.455 0.00 0.00 0.00 4.85
7197 7345 2.432444 CCTTTCCCTACATTTCACGCA 58.568 47.619 0.00 0.00 0.00 5.24
7198 7346 1.132453 GCCTTTCCCTACATTTCACGC 59.868 52.381 0.00 0.00 0.00 5.34
7199 7347 2.420022 CAGCCTTTCCCTACATTTCACG 59.580 50.000 0.00 0.00 0.00 4.35
7200 7348 2.164422 GCAGCCTTTCCCTACATTTCAC 59.836 50.000 0.00 0.00 0.00 3.18
7201 7349 2.224992 TGCAGCCTTTCCCTACATTTCA 60.225 45.455 0.00 0.00 0.00 2.69
7202 7350 2.446435 TGCAGCCTTTCCCTACATTTC 58.554 47.619 0.00 0.00 0.00 2.17
7203 7351 2.603075 TGCAGCCTTTCCCTACATTT 57.397 45.000 0.00 0.00 0.00 2.32
7204 7352 2.834638 ATGCAGCCTTTCCCTACATT 57.165 45.000 0.00 0.00 0.00 2.71
7205 7353 2.780010 AGTATGCAGCCTTTCCCTACAT 59.220 45.455 0.00 0.00 0.00 2.29
7206 7354 2.196595 AGTATGCAGCCTTTCCCTACA 58.803 47.619 0.00 0.00 0.00 2.74
7207 7355 4.625607 ATAGTATGCAGCCTTTCCCTAC 57.374 45.455 0.00 0.00 0.00 3.18
7208 7356 5.480772 GTCTATAGTATGCAGCCTTTCCCTA 59.519 44.000 0.00 0.00 0.00 3.53
7209 7357 4.284746 GTCTATAGTATGCAGCCTTTCCCT 59.715 45.833 0.00 0.00 0.00 4.20
7210 7358 4.563786 GGTCTATAGTATGCAGCCTTTCCC 60.564 50.000 0.00 0.00 0.00 3.97
7211 7359 4.284746 AGGTCTATAGTATGCAGCCTTTCC 59.715 45.833 0.00 0.00 0.00 3.13
7212 7360 5.476091 AGGTCTATAGTATGCAGCCTTTC 57.524 43.478 0.00 0.00 0.00 2.62
7213 7361 6.996180 TTAGGTCTATAGTATGCAGCCTTT 57.004 37.500 0.00 0.00 0.00 3.11
7214 7362 6.555360 ACTTTAGGTCTATAGTATGCAGCCTT 59.445 38.462 0.00 0.00 0.00 4.35
7215 7363 6.015010 CACTTTAGGTCTATAGTATGCAGCCT 60.015 42.308 0.00 0.00 0.00 4.58
7216 7364 6.159988 CACTTTAGGTCTATAGTATGCAGCC 58.840 44.000 0.00 0.00 0.00 4.85
7217 7365 6.159988 CCACTTTAGGTCTATAGTATGCAGC 58.840 44.000 0.00 0.00 0.00 5.25
7218 7366 7.291411 ACCACTTTAGGTCTATAGTATGCAG 57.709 40.000 0.00 0.00 37.28 4.41
7231 7379 0.178912 AGGGTCCGACCACTTTAGGT 60.179 55.000 19.43 0.00 46.82 3.08
7232 7380 0.981943 AAGGGTCCGACCACTTTAGG 59.018 55.000 19.43 0.00 41.02 2.69
7233 7381 1.066358 GGAAGGGTCCGACCACTTTAG 60.066 57.143 19.43 0.00 41.02 1.85
7234 7382 0.978907 GGAAGGGTCCGACCACTTTA 59.021 55.000 19.43 0.00 41.02 1.85
7235 7383 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
7236 7384 3.479979 GGAAGGGTCCGACCACTT 58.520 61.111 19.43 17.88 41.02 3.16
7244 7392 1.541620 AGGGTCCAAGGAAGGGTCC 60.542 63.158 0.00 0.00 45.35 4.46
7245 7393 1.685820 CAGGGTCCAAGGAAGGGTC 59.314 63.158 0.00 0.00 0.00 4.46
7246 7394 2.539081 GCAGGGTCCAAGGAAGGGT 61.539 63.158 0.00 0.00 0.00 4.34
7247 7395 2.356667 GCAGGGTCCAAGGAAGGG 59.643 66.667 0.00 0.00 0.00 3.95
7248 7396 2.045926 CGCAGGGTCCAAGGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
7249 7397 2.747855 GCGCAGGGTCCAAGGAAG 60.748 66.667 0.30 0.00 0.00 3.46
7250 7398 3.126703 TTGCGCAGGGTCCAAGGAA 62.127 57.895 11.31 0.00 0.00 3.36
7251 7399 3.551496 CTTGCGCAGGGTCCAAGGA 62.551 63.158 12.39 0.00 33.96 3.36
7252 7400 3.058160 CTTGCGCAGGGTCCAAGG 61.058 66.667 12.39 0.00 33.96 3.61
7253 7401 3.741476 GCTTGCGCAGGGTCCAAG 61.741 66.667 21.88 10.17 39.08 3.61
7261 7409 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
7264 7412 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
7265 7413 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
7266 7414 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
7267 7415 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
7273 7421 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
7274 7422 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
7275 7423 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
7276 7424 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
7277 7425 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
7294 7442 0.610785 AATACGCAACCAACAGGGGG 60.611 55.000 0.00 0.00 42.91 5.40
7295 7443 1.253100 AAATACGCAACCAACAGGGG 58.747 50.000 0.00 0.00 42.91 4.79
7296 7444 2.352323 GGAAAATACGCAACCAACAGGG 60.352 50.000 0.00 0.00 44.81 4.45
7297 7445 2.294791 TGGAAAATACGCAACCAACAGG 59.705 45.455 0.00 0.00 0.00 4.00
7298 7446 3.004315 AGTGGAAAATACGCAACCAACAG 59.996 43.478 0.00 0.00 32.32 3.16
7299 7447 2.952978 AGTGGAAAATACGCAACCAACA 59.047 40.909 0.00 0.00 32.32 3.33
7300 7448 3.243267 ACAGTGGAAAATACGCAACCAAC 60.243 43.478 0.00 0.00 32.32 3.77
7301 7449 2.952978 ACAGTGGAAAATACGCAACCAA 59.047 40.909 0.00 0.00 32.32 3.67
7302 7450 2.577700 ACAGTGGAAAATACGCAACCA 58.422 42.857 0.00 0.00 0.00 3.67
7320 7468 4.764308 TGCAGCTTACATAACCATGAAACA 59.236 37.500 0.00 0.00 35.96 2.83
7338 7486 3.134458 ACTTGTCTTACAGAGTTGCAGC 58.866 45.455 0.00 0.00 0.00 5.25
7410 7558 2.645838 AGGCCGTCATATGAGCAAAT 57.354 45.000 16.27 2.27 0.00 2.32
7568 7724 4.967437 AGAGTGACACTAAATCGTACGTC 58.033 43.478 16.05 3.18 0.00 4.34
7569 7725 5.368256 AAGAGTGACACTAAATCGTACGT 57.632 39.130 16.05 0.00 0.00 3.57
7571 7727 6.643770 TGGAAAAGAGTGACACTAAATCGTAC 59.356 38.462 8.41 0.00 0.00 3.67
7572 7728 6.751157 TGGAAAAGAGTGACACTAAATCGTA 58.249 36.000 8.41 0.00 0.00 3.43
7573 7729 5.607477 TGGAAAAGAGTGACACTAAATCGT 58.393 37.500 8.41 0.00 0.00 3.73
7574 7730 6.539649 TTGGAAAAGAGTGACACTAAATCG 57.460 37.500 8.41 0.00 0.00 3.34
7575 7731 8.567948 TGATTTGGAAAAGAGTGACACTAAATC 58.432 33.333 20.78 20.78 36.50 2.17
7576 7732 8.463930 TGATTTGGAAAAGAGTGACACTAAAT 57.536 30.769 8.41 8.83 0.00 1.40
7592 7847 8.220559 TGGGGTTTGAAAATTATTGATTTGGAA 58.779 29.630 0.00 0.00 37.98 3.53
7680 8025 9.028185 CAAATTTAGCTAAGAAATCTGCAATCC 57.972 33.333 6.24 0.00 0.00 3.01
7792 8140 7.563888 ACCGGGAGCTTTATTAATTTAGAAC 57.436 36.000 6.32 0.00 0.00 3.01
7919 8295 0.324738 TCTGCCTCTCGTCTTCCCAT 60.325 55.000 0.00 0.00 0.00 4.00
7936 8312 1.081174 TCATTCCTCCCTTCACCCTCT 59.919 52.381 0.00 0.00 0.00 3.69
7952 8328 2.463589 TTTGTCGCCGCCTCCTCATT 62.464 55.000 0.00 0.00 0.00 2.57
7961 8337 1.741770 ACTCCATCTTTGTCGCCGC 60.742 57.895 0.00 0.00 0.00 6.53
7962 8338 1.970917 GCACTCCATCTTTGTCGCCG 61.971 60.000 0.00 0.00 0.00 6.46
7963 8339 0.674895 AGCACTCCATCTTTGTCGCC 60.675 55.000 0.00 0.00 0.00 5.54
7964 8340 0.723981 GAGCACTCCATCTTTGTCGC 59.276 55.000 0.00 0.00 0.00 5.19
7965 8341 0.994995 CGAGCACTCCATCTTTGTCG 59.005 55.000 0.00 0.00 0.00 4.35
7966 8342 0.723981 GCGAGCACTCCATCTTTGTC 59.276 55.000 0.00 0.00 0.00 3.18
7967 8343 0.674895 GGCGAGCACTCCATCTTTGT 60.675 55.000 0.00 0.00 0.00 2.83
7968 8344 2.093216 GGCGAGCACTCCATCTTTG 58.907 57.895 0.00 0.00 0.00 2.77
7969 8345 4.625800 GGCGAGCACTCCATCTTT 57.374 55.556 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.