Multiple sequence alignment - TraesCS1B01G144900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G144900 chr1B 100.000 2237 0 0 1 2237 198408498 198406262 0.000000e+00 4132.0
1 TraesCS1B01G144900 chr1B 97.537 1340 25 3 1 1338 381501757 381500424 0.000000e+00 2285.0
2 TraesCS1B01G144900 chr1D 94.249 1339 72 4 1 1337 361103102 361101767 0.000000e+00 2041.0
3 TraesCS1B01G144900 chr1D 90.859 733 39 15 1336 2062 140140234 140140944 0.000000e+00 957.0
4 TraesCS1B01G144900 chr4B 93.731 1340 73 5 1 1336 105360412 105359080 0.000000e+00 1999.0
5 TraesCS1B01G144900 chr3A 91.214 1343 109 6 1 1336 472766268 472764928 0.000000e+00 1818.0
6 TraesCS1B01G144900 chr3A 75.221 226 37 13 1926 2142 44444425 44444210 3.060000e-14 89.8
7 TraesCS1B01G144900 chr3B 90.089 1342 123 7 1 1336 112904384 112905721 0.000000e+00 1733.0
8 TraesCS1B01G144900 chr6B 90.000 1330 127 5 1 1328 163948195 163946870 0.000000e+00 1714.0
9 TraesCS1B01G144900 chr6B 95.930 1032 38 1 304 1335 567543090 567544117 0.000000e+00 1670.0
10 TraesCS1B01G144900 chr7A 89.686 1338 134 4 1 1336 538983140 538984475 0.000000e+00 1703.0
11 TraesCS1B01G144900 chr5D 89.606 1193 108 13 152 1336 464404597 464405781 0.000000e+00 1502.0
12 TraesCS1B01G144900 chr1A 91.887 567 39 5 1495 2058 150733877 150733315 0.000000e+00 785.0
13 TraesCS1B01G144900 chr1A 92.800 125 9 0 1336 1460 150735334 150735210 4.910000e-42 182.0
14 TraesCS1B01G144900 chr3D 84.071 113 17 1 1943 2054 12186746 12186634 8.450000e-20 108.0
15 TraesCS1B01G144900 chr5B 81.553 103 14 4 1962 2059 21745924 21746026 1.840000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G144900 chr1B 198406262 198408498 2236 True 4132.0 4132 100.0000 1 2237 1 chr1B.!!$R1 2236
1 TraesCS1B01G144900 chr1B 381500424 381501757 1333 True 2285.0 2285 97.5370 1 1338 1 chr1B.!!$R2 1337
2 TraesCS1B01G144900 chr1D 361101767 361103102 1335 True 2041.0 2041 94.2490 1 1337 1 chr1D.!!$R1 1336
3 TraesCS1B01G144900 chr1D 140140234 140140944 710 False 957.0 957 90.8590 1336 2062 1 chr1D.!!$F1 726
4 TraesCS1B01G144900 chr4B 105359080 105360412 1332 True 1999.0 1999 93.7310 1 1336 1 chr4B.!!$R1 1335
5 TraesCS1B01G144900 chr3A 472764928 472766268 1340 True 1818.0 1818 91.2140 1 1336 1 chr3A.!!$R2 1335
6 TraesCS1B01G144900 chr3B 112904384 112905721 1337 False 1733.0 1733 90.0890 1 1336 1 chr3B.!!$F1 1335
7 TraesCS1B01G144900 chr6B 163946870 163948195 1325 True 1714.0 1714 90.0000 1 1328 1 chr6B.!!$R1 1327
8 TraesCS1B01G144900 chr6B 567543090 567544117 1027 False 1670.0 1670 95.9300 304 1335 1 chr6B.!!$F1 1031
9 TraesCS1B01G144900 chr7A 538983140 538984475 1335 False 1703.0 1703 89.6860 1 1336 1 chr7A.!!$F1 1335
10 TraesCS1B01G144900 chr5D 464404597 464405781 1184 False 1502.0 1502 89.6060 152 1336 1 chr5D.!!$F1 1184
11 TraesCS1B01G144900 chr1A 150733315 150735334 2019 True 483.5 785 92.3435 1336 2058 2 chr1A.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.037975 GTTAAAGCGGTCCTCACGGA 60.038 55.0 0.0 0.0 36.83 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 3048 0.310854 GTGAGACAAAACAAGGCCCG 59.689 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.037975 GTTAAAGCGGTCCTCACGGA 60.038 55.000 0.00 0.00 36.83 4.69
534 535 4.803426 GTCCAGCGAGCCCTCACG 62.803 72.222 0.00 0.00 0.00 4.35
833 839 5.630415 AATAGGATTTGGACTTCGGATCA 57.370 39.130 0.00 0.00 0.00 2.92
1030 1036 1.442526 GAGAGCATGGTGGAATGGCG 61.443 60.000 0.00 0.00 0.00 5.69
1178 1184 1.936547 CAGTAAGATCAAAGCGGAGGC 59.063 52.381 0.00 0.00 40.37 4.70
1288 1305 4.990543 TTGCGACTTTTGTCTATGACTG 57.009 40.909 0.00 0.00 46.76 3.51
1366 1385 9.233232 CCAAGTAATAATGCGGTTTTATTTCTC 57.767 33.333 0.00 0.00 30.26 2.87
1408 1428 7.650834 TTGGGAATTTATTTTTCTCGCTTTG 57.349 32.000 0.00 0.00 0.00 2.77
1460 1480 6.605194 TCTTCTTCTACTCACTCATATGCACT 59.395 38.462 0.00 0.00 0.00 4.40
1487 1507 2.050836 TTTCTCCTGGAACCGCTGCA 62.051 55.000 0.00 0.00 33.13 4.41
1490 1510 1.580845 CTCCTGGAACCGCTGCAAAG 61.581 60.000 0.00 0.00 0.00 2.77
1491 1511 2.256461 CTGGAACCGCTGCAAAGC 59.744 61.111 0.00 0.00 0.00 3.51
1493 1513 4.404654 GGAACCGCTGCAAAGCCG 62.405 66.667 0.00 0.00 0.00 5.52
1562 2880 1.229400 TACGCCTCCCTCCAAACCT 60.229 57.895 0.00 0.00 0.00 3.50
1591 2911 3.447918 TCAAATCCGACGACCTTATCC 57.552 47.619 0.00 0.00 0.00 2.59
1682 3002 2.069273 GTCGTGTCATCCCAAACTCTG 58.931 52.381 0.00 0.00 0.00 3.35
1728 3048 2.187946 CGACCCCATCTCAGCCAC 59.812 66.667 0.00 0.00 0.00 5.01
1746 3066 0.106918 ACGGGCCTTGTTTTGTCTCA 60.107 50.000 0.84 0.00 0.00 3.27
1750 3070 3.153919 GGGCCTTGTTTTGTCTCACATA 58.846 45.455 0.84 0.00 0.00 2.29
1790 3110 4.162040 AGAATTTTGATCCCGAGCTCAT 57.838 40.909 15.40 0.00 0.00 2.90
1792 3112 5.874093 AGAATTTTGATCCCGAGCTCATAT 58.126 37.500 15.40 3.21 0.00 1.78
1796 3116 1.904537 TGATCCCGAGCTCATATGCAT 59.095 47.619 15.40 3.79 34.99 3.96
1879 3199 9.683069 GATAAACATTGACAAATTCTTCACACT 57.317 29.630 0.00 0.00 0.00 3.55
1923 3243 6.401047 AATGACATTCATAATGGCCTTGAG 57.599 37.500 3.32 0.00 46.69 3.02
2111 3432 7.295952 TGAATTTTATCGTTCAGAGAAGAGC 57.704 36.000 0.00 0.00 31.05 4.09
2112 3433 6.873605 TGAATTTTATCGTTCAGAGAAGAGCA 59.126 34.615 0.00 0.00 31.05 4.26
2113 3434 6.654793 ATTTTATCGTTCAGAGAAGAGCAC 57.345 37.500 0.00 0.00 31.05 4.40
2114 3435 2.270275 ATCGTTCAGAGAAGAGCACG 57.730 50.000 0.00 0.00 0.00 5.34
2115 3436 0.952280 TCGTTCAGAGAAGAGCACGT 59.048 50.000 0.00 0.00 0.00 4.49
2116 3437 1.056103 CGTTCAGAGAAGAGCACGTG 58.944 55.000 12.28 12.28 0.00 4.49
2117 3438 1.600663 CGTTCAGAGAAGAGCACGTGT 60.601 52.381 18.38 3.69 0.00 4.49
2118 3439 1.789464 GTTCAGAGAAGAGCACGTGTG 59.211 52.381 18.38 4.76 0.00 3.82
2128 3449 2.573869 CACGTGTGCTCGGGATCT 59.426 61.111 7.58 0.00 36.20 2.75
2129 3450 1.807226 CACGTGTGCTCGGGATCTA 59.193 57.895 7.58 0.00 36.20 1.98
2130 3451 0.172578 CACGTGTGCTCGGGATCTAA 59.827 55.000 7.58 0.00 36.20 2.10
2131 3452 0.892755 ACGTGTGCTCGGGATCTAAA 59.107 50.000 0.00 0.00 34.94 1.85
2132 3453 1.135083 ACGTGTGCTCGGGATCTAAAG 60.135 52.381 0.00 0.00 34.94 1.85
2133 3454 1.134367 CGTGTGCTCGGGATCTAAAGA 59.866 52.381 0.00 0.00 0.00 2.52
2134 3455 2.416836 CGTGTGCTCGGGATCTAAAGAA 60.417 50.000 0.00 0.00 0.00 2.52
2135 3456 2.930682 GTGTGCTCGGGATCTAAAGAAC 59.069 50.000 0.00 0.00 0.00 3.01
2136 3457 2.565391 TGTGCTCGGGATCTAAAGAACA 59.435 45.455 0.00 0.00 0.00 3.18
2137 3458 2.930682 GTGCTCGGGATCTAAAGAACAC 59.069 50.000 0.00 0.00 0.00 3.32
2138 3459 2.832129 TGCTCGGGATCTAAAGAACACT 59.168 45.455 0.00 0.00 0.00 3.55
2139 3460 3.260884 TGCTCGGGATCTAAAGAACACTT 59.739 43.478 0.00 0.00 0.00 3.16
2140 3461 4.254492 GCTCGGGATCTAAAGAACACTTT 58.746 43.478 0.00 0.00 37.56 2.66
2141 3462 4.330347 GCTCGGGATCTAAAGAACACTTTC 59.670 45.833 0.00 0.00 35.75 2.62
2142 3463 5.477607 TCGGGATCTAAAGAACACTTTCA 57.522 39.130 0.00 0.00 35.75 2.69
2143 3464 6.049955 TCGGGATCTAAAGAACACTTTCAT 57.950 37.500 0.00 0.00 35.75 2.57
2144 3465 7.177832 TCGGGATCTAAAGAACACTTTCATA 57.822 36.000 0.00 0.00 35.75 2.15
2145 3466 7.039882 TCGGGATCTAAAGAACACTTTCATAC 58.960 38.462 0.00 0.00 35.75 2.39
2146 3467 7.042335 CGGGATCTAAAGAACACTTTCATACT 58.958 38.462 0.00 0.00 35.75 2.12
2147 3468 8.195436 CGGGATCTAAAGAACACTTTCATACTA 58.805 37.037 0.00 0.00 35.75 1.82
2148 3469 9.886132 GGGATCTAAAGAACACTTTCATACTAA 57.114 33.333 0.00 0.00 35.75 2.24
2199 3520 8.446599 ACATTTATATCGGTTTACTGGAAAGG 57.553 34.615 0.00 0.00 0.00 3.11
2200 3521 8.050930 ACATTTATATCGGTTTACTGGAAAGGT 58.949 33.333 0.00 0.00 0.00 3.50
2201 3522 7.852971 TTTATATCGGTTTACTGGAAAGGTG 57.147 36.000 0.00 0.00 0.00 4.00
2202 3523 1.886886 TCGGTTTACTGGAAAGGTGC 58.113 50.000 0.00 0.00 0.00 5.01
2203 3524 1.418637 TCGGTTTACTGGAAAGGTGCT 59.581 47.619 0.00 0.00 0.00 4.40
2204 3525 2.633967 TCGGTTTACTGGAAAGGTGCTA 59.366 45.455 0.00 0.00 0.00 3.49
2205 3526 3.262405 TCGGTTTACTGGAAAGGTGCTAT 59.738 43.478 0.00 0.00 0.00 2.97
2206 3527 4.467082 TCGGTTTACTGGAAAGGTGCTATA 59.533 41.667 0.00 0.00 0.00 1.31
2207 3528 4.809426 CGGTTTACTGGAAAGGTGCTATAG 59.191 45.833 0.00 0.00 0.00 1.31
2208 3529 5.626116 CGGTTTACTGGAAAGGTGCTATAGT 60.626 44.000 0.84 0.00 0.00 2.12
2209 3530 6.178324 GGTTTACTGGAAAGGTGCTATAGTT 58.822 40.000 0.84 0.00 0.00 2.24
2210 3531 6.657966 GGTTTACTGGAAAGGTGCTATAGTTT 59.342 38.462 0.84 0.00 0.00 2.66
2211 3532 7.176165 GGTTTACTGGAAAGGTGCTATAGTTTT 59.824 37.037 0.84 0.00 0.00 2.43
2212 3533 7.681939 TTACTGGAAAGGTGCTATAGTTTTG 57.318 36.000 0.84 0.00 0.00 2.44
2213 3534 5.631119 ACTGGAAAGGTGCTATAGTTTTGT 58.369 37.500 0.84 0.00 0.00 2.83
2214 3535 5.473504 ACTGGAAAGGTGCTATAGTTTTGTG 59.526 40.000 0.84 0.00 0.00 3.33
2215 3536 4.217550 TGGAAAGGTGCTATAGTTTTGTGC 59.782 41.667 0.84 0.00 0.00 4.57
2216 3537 4.217550 GGAAAGGTGCTATAGTTTTGTGCA 59.782 41.667 0.84 0.00 0.00 4.57
2217 3538 5.105756 GGAAAGGTGCTATAGTTTTGTGCAT 60.106 40.000 0.84 0.00 36.04 3.96
2218 3539 4.970662 AGGTGCTATAGTTTTGTGCATG 57.029 40.909 0.84 0.00 36.04 4.06
2219 3540 4.335416 AGGTGCTATAGTTTTGTGCATGT 58.665 39.130 0.84 0.00 36.04 3.21
2220 3541 4.766891 AGGTGCTATAGTTTTGTGCATGTT 59.233 37.500 0.84 0.00 36.04 2.71
2221 3542 5.943416 AGGTGCTATAGTTTTGTGCATGTTA 59.057 36.000 0.84 0.00 36.04 2.41
2222 3543 6.094048 AGGTGCTATAGTTTTGTGCATGTTAG 59.906 38.462 0.84 0.00 36.04 2.34
2223 3544 6.093495 GGTGCTATAGTTTTGTGCATGTTAGA 59.907 38.462 0.84 0.00 36.04 2.10
2224 3545 7.361713 GGTGCTATAGTTTTGTGCATGTTAGAA 60.362 37.037 0.84 0.00 36.04 2.10
2225 3546 8.020819 GTGCTATAGTTTTGTGCATGTTAGAAA 58.979 33.333 0.84 0.00 36.04 2.52
2226 3547 8.739039 TGCTATAGTTTTGTGCATGTTAGAAAT 58.261 29.630 0.84 0.00 0.00 2.17
2227 3548 9.013490 GCTATAGTTTTGTGCATGTTAGAAATG 57.987 33.333 0.84 0.00 0.00 2.32
2228 3549 9.507280 CTATAGTTTTGTGCATGTTAGAAATGG 57.493 33.333 0.00 0.00 0.00 3.16
2229 3550 6.160576 AGTTTTGTGCATGTTAGAAATGGT 57.839 33.333 0.00 0.00 0.00 3.55
2230 3551 6.215845 AGTTTTGTGCATGTTAGAAATGGTC 58.784 36.000 0.00 0.00 0.00 4.02
2231 3552 5.781210 TTTGTGCATGTTAGAAATGGTCA 57.219 34.783 0.00 0.00 0.00 4.02
2232 3553 4.764679 TGTGCATGTTAGAAATGGTCAC 57.235 40.909 0.00 0.00 0.00 3.67
2233 3554 4.140536 TGTGCATGTTAGAAATGGTCACA 58.859 39.130 0.00 0.00 30.49 3.58
2234 3555 4.582240 TGTGCATGTTAGAAATGGTCACAA 59.418 37.500 0.00 0.00 30.22 3.33
2235 3556 4.917415 GTGCATGTTAGAAATGGTCACAAC 59.083 41.667 0.00 0.00 0.00 3.32
2236 3557 4.826733 TGCATGTTAGAAATGGTCACAACT 59.173 37.500 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.039092 GGAGGGAGCTTGCTGGCA 62.039 66.667 0.00 0.00 34.17 4.92
89 90 3.123804 GTGAGGTGATAAATCGCGATGT 58.876 45.455 24.47 20.77 38.16 3.06
534 535 4.887748 TGAGAGAGATCCAGTTGTTGTTC 58.112 43.478 0.00 0.00 0.00 3.18
845 851 2.906897 CACAGTTTGGCCAGCCGT 60.907 61.111 5.11 0.00 39.42 5.68
998 1004 2.839486 TGCTCTCACCGAAGTCATTT 57.161 45.000 0.00 0.00 0.00 2.32
1030 1036 1.066143 TCCAAGGCGAATCTGAAGGTC 60.066 52.381 0.00 0.00 0.00 3.85
1178 1184 2.464459 GCCATCGCCCAAAGAGACG 61.464 63.158 0.00 0.00 0.00 4.18
1288 1305 5.663456 TGCCATTTCATTGATTAAGAAGGC 58.337 37.500 0.00 0.00 34.80 4.35
1366 1385 3.304026 CCCAAATGAACGAATCAATTGCG 59.696 43.478 14.26 1.22 44.27 4.85
1408 1428 3.122613 CAGCAGTCTGACAAAATCGACTC 59.877 47.826 10.88 0.00 42.95 3.36
1460 1480 3.557054 CGGTTCCAGGAGAAAGATGAACA 60.557 47.826 0.00 0.00 35.85 3.18
1562 2880 1.083489 GTCGGATTTGATCGTGGCAA 58.917 50.000 0.00 0.00 0.00 4.52
1728 3048 0.310854 GTGAGACAAAACAAGGCCCG 59.689 55.000 0.00 0.00 0.00 6.13
1764 3084 3.367292 GCTCGGGATCAAAATTCTTTGCA 60.367 43.478 0.00 0.00 41.53 4.08
1767 3087 4.335416 TGAGCTCGGGATCAAAATTCTTT 58.665 39.130 0.00 0.00 34.74 2.52
1892 3212 9.715121 GGCCATTATGAATGTCATTTCATTATT 57.285 29.630 0.00 0.00 42.29 1.40
1893 3213 9.096823 AGGCCATTATGAATGTCATTTCATTAT 57.903 29.630 5.01 8.58 42.29 1.28
1912 3232 7.015001 GGATCATCTATTTTTCTCAAGGCCATT 59.985 37.037 5.01 0.00 0.00 3.16
1914 3234 5.829924 GGATCATCTATTTTTCTCAAGGCCA 59.170 40.000 5.01 0.00 0.00 5.36
1923 3243 9.921637 ATAGTCTTCTCGGATCATCTATTTTTC 57.078 33.333 0.00 0.00 0.00 2.29
1990 3310 5.648178 TGTGATGAAATGACATTCTTGGG 57.352 39.130 0.05 0.00 34.84 4.12
2085 3406 8.230486 GCTCTTCTCTGAACGATAAAATTCAAA 58.770 33.333 0.00 0.00 34.52 2.69
2086 3407 7.387673 TGCTCTTCTCTGAACGATAAAATTCAA 59.612 33.333 0.00 0.00 34.52 2.69
2087 3408 6.873605 TGCTCTTCTCTGAACGATAAAATTCA 59.126 34.615 0.00 0.00 33.82 2.57
2088 3409 7.176741 GTGCTCTTCTCTGAACGATAAAATTC 58.823 38.462 0.00 0.00 0.00 2.17
2089 3410 6.183360 CGTGCTCTTCTCTGAACGATAAAATT 60.183 38.462 0.00 0.00 33.03 1.82
2090 3411 5.289675 CGTGCTCTTCTCTGAACGATAAAAT 59.710 40.000 0.00 0.00 33.03 1.82
2091 3412 4.621460 CGTGCTCTTCTCTGAACGATAAAA 59.379 41.667 0.00 0.00 33.03 1.52
2092 3413 4.166523 CGTGCTCTTCTCTGAACGATAAA 58.833 43.478 0.00 0.00 33.03 1.40
2093 3414 3.190744 ACGTGCTCTTCTCTGAACGATAA 59.809 43.478 0.25 0.00 35.18 1.75
2094 3415 2.747989 ACGTGCTCTTCTCTGAACGATA 59.252 45.455 0.25 0.00 35.18 2.92
2095 3416 1.542030 ACGTGCTCTTCTCTGAACGAT 59.458 47.619 0.25 0.00 35.18 3.73
2096 3417 0.952280 ACGTGCTCTTCTCTGAACGA 59.048 50.000 0.25 0.00 35.18 3.85
2097 3418 1.056103 CACGTGCTCTTCTCTGAACG 58.944 55.000 0.82 0.00 37.09 3.95
2098 3419 1.789464 CACACGTGCTCTTCTCTGAAC 59.211 52.381 17.22 0.00 0.00 3.18
2099 3420 2.140065 CACACGTGCTCTTCTCTGAA 57.860 50.000 17.22 0.00 0.00 3.02
2100 3421 3.873805 CACACGTGCTCTTCTCTGA 57.126 52.632 17.22 0.00 0.00 3.27
2111 3432 0.172578 TTAGATCCCGAGCACACGTG 59.827 55.000 15.48 15.48 0.00 4.49
2112 3433 0.892755 TTTAGATCCCGAGCACACGT 59.107 50.000 0.00 0.00 0.00 4.49
2113 3434 1.134367 TCTTTAGATCCCGAGCACACG 59.866 52.381 0.00 0.00 0.00 4.49
2114 3435 2.930682 GTTCTTTAGATCCCGAGCACAC 59.069 50.000 0.00 0.00 0.00 3.82
2115 3436 2.565391 TGTTCTTTAGATCCCGAGCACA 59.435 45.455 0.00 0.00 0.00 4.57
2116 3437 2.930682 GTGTTCTTTAGATCCCGAGCAC 59.069 50.000 0.00 0.00 32.14 4.40
2117 3438 2.832129 AGTGTTCTTTAGATCCCGAGCA 59.168 45.455 0.00 0.00 0.00 4.26
2118 3439 3.528597 AGTGTTCTTTAGATCCCGAGC 57.471 47.619 0.00 0.00 0.00 5.03
2119 3440 5.479306 TGAAAGTGTTCTTTAGATCCCGAG 58.521 41.667 0.00 0.00 42.99 4.63
2120 3441 5.477607 TGAAAGTGTTCTTTAGATCCCGA 57.522 39.130 0.00 0.00 42.99 5.14
2121 3442 7.042335 AGTATGAAAGTGTTCTTTAGATCCCG 58.958 38.462 0.00 0.00 42.99 5.14
2122 3443 9.886132 TTAGTATGAAAGTGTTCTTTAGATCCC 57.114 33.333 0.00 0.00 42.99 3.85
2173 3494 9.550406 CCTTTCCAGTAAACCGATATAAATGTA 57.450 33.333 0.00 0.00 0.00 2.29
2174 3495 8.050930 ACCTTTCCAGTAAACCGATATAAATGT 58.949 33.333 0.00 0.00 0.00 2.71
2175 3496 8.342634 CACCTTTCCAGTAAACCGATATAAATG 58.657 37.037 0.00 0.00 0.00 2.32
2176 3497 7.012989 GCACCTTTCCAGTAAACCGATATAAAT 59.987 37.037 0.00 0.00 0.00 1.40
2177 3498 6.316890 GCACCTTTCCAGTAAACCGATATAAA 59.683 38.462 0.00 0.00 0.00 1.40
2178 3499 5.818857 GCACCTTTCCAGTAAACCGATATAA 59.181 40.000 0.00 0.00 0.00 0.98
2179 3500 5.129815 AGCACCTTTCCAGTAAACCGATATA 59.870 40.000 0.00 0.00 0.00 0.86
2180 3501 4.080526 AGCACCTTTCCAGTAAACCGATAT 60.081 41.667 0.00 0.00 0.00 1.63
2181 3502 3.262405 AGCACCTTTCCAGTAAACCGATA 59.738 43.478 0.00 0.00 0.00 2.92
2182 3503 2.039879 AGCACCTTTCCAGTAAACCGAT 59.960 45.455 0.00 0.00 0.00 4.18
2183 3504 1.418637 AGCACCTTTCCAGTAAACCGA 59.581 47.619 0.00 0.00 0.00 4.69
2184 3505 1.892209 AGCACCTTTCCAGTAAACCG 58.108 50.000 0.00 0.00 0.00 4.44
2185 3506 5.742063 ACTATAGCACCTTTCCAGTAAACC 58.258 41.667 0.00 0.00 0.00 3.27
2186 3507 7.683437 AAACTATAGCACCTTTCCAGTAAAC 57.317 36.000 0.00 0.00 0.00 2.01
2187 3508 7.722285 ACAAAACTATAGCACCTTTCCAGTAAA 59.278 33.333 0.00 0.00 0.00 2.01
2188 3509 7.174253 CACAAAACTATAGCACCTTTCCAGTAA 59.826 37.037 0.00 0.00 0.00 2.24
2189 3510 6.653320 CACAAAACTATAGCACCTTTCCAGTA 59.347 38.462 0.00 0.00 0.00 2.74
2190 3511 5.473504 CACAAAACTATAGCACCTTTCCAGT 59.526 40.000 0.00 0.00 0.00 4.00
2191 3512 5.619981 GCACAAAACTATAGCACCTTTCCAG 60.620 44.000 0.00 0.00 0.00 3.86
2192 3513 4.217550 GCACAAAACTATAGCACCTTTCCA 59.782 41.667 0.00 0.00 0.00 3.53
2193 3514 4.217550 TGCACAAAACTATAGCACCTTTCC 59.782 41.667 0.00 0.00 0.00 3.13
2194 3515 5.371115 TGCACAAAACTATAGCACCTTTC 57.629 39.130 0.00 0.00 0.00 2.62
2195 3516 5.243730 ACATGCACAAAACTATAGCACCTTT 59.756 36.000 0.00 0.00 38.12 3.11
2196 3517 4.766891 ACATGCACAAAACTATAGCACCTT 59.233 37.500 0.00 0.00 38.12 3.50
2197 3518 4.335416 ACATGCACAAAACTATAGCACCT 58.665 39.130 0.00 0.00 38.12 4.00
2198 3519 4.701956 ACATGCACAAAACTATAGCACC 57.298 40.909 0.00 0.00 38.12 5.01
2199 3520 7.072177 TCTAACATGCACAAAACTATAGCAC 57.928 36.000 0.00 0.00 38.12 4.40
2200 3521 7.680442 TTCTAACATGCACAAAACTATAGCA 57.320 32.000 0.00 0.00 39.79 3.49
2201 3522 9.013490 CATTTCTAACATGCACAAAACTATAGC 57.987 33.333 0.00 0.00 0.00 2.97
2202 3523 9.507280 CCATTTCTAACATGCACAAAACTATAG 57.493 33.333 0.00 0.00 0.00 1.31
2203 3524 9.019656 ACCATTTCTAACATGCACAAAACTATA 57.980 29.630 0.00 0.00 0.00 1.31
2204 3525 7.895759 ACCATTTCTAACATGCACAAAACTAT 58.104 30.769 0.00 0.00 0.00 2.12
2205 3526 7.013750 TGACCATTTCTAACATGCACAAAACTA 59.986 33.333 0.00 0.00 0.00 2.24
2206 3527 6.160576 ACCATTTCTAACATGCACAAAACT 57.839 33.333 0.00 0.00 0.00 2.66
2207 3528 5.982516 TGACCATTTCTAACATGCACAAAAC 59.017 36.000 0.00 0.00 0.00 2.43
2208 3529 5.982516 GTGACCATTTCTAACATGCACAAAA 59.017 36.000 0.00 0.00 0.00 2.44
2209 3530 5.068329 TGTGACCATTTCTAACATGCACAAA 59.932 36.000 0.00 0.00 31.64 2.83
2210 3531 4.582240 TGTGACCATTTCTAACATGCACAA 59.418 37.500 0.00 0.00 31.64 3.33
2211 3532 4.140536 TGTGACCATTTCTAACATGCACA 58.859 39.130 0.00 0.00 0.00 4.57
2212 3533 4.764679 TGTGACCATTTCTAACATGCAC 57.235 40.909 0.00 0.00 0.00 4.57
2213 3534 4.826733 AGTTGTGACCATTTCTAACATGCA 59.173 37.500 0.00 0.00 0.00 3.96
2214 3535 5.376854 AGTTGTGACCATTTCTAACATGC 57.623 39.130 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.