Multiple sequence alignment - TraesCS1B01G143600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G143600 chr1B 100.000 2213 0 0 1 2213 195103608 195101396 0.000000e+00 4087.0
1 TraesCS1B01G143600 chr1B 96.933 163 5 0 1971 2133 680813754 680813916 7.780000e-70 274.0
2 TraesCS1B01G143600 chr1A 93.660 1041 39 6 813 1841 142101444 142102469 0.000000e+00 1531.0
3 TraesCS1B01G143600 chr1A 92.640 788 55 3 1 787 142100663 142101448 0.000000e+00 1131.0
4 TraesCS1B01G143600 chr1A 95.266 169 8 0 1961 2129 498179125 498179293 3.620000e-68 268.0
5 TraesCS1B01G143600 chr1D 95.544 965 28 7 888 1841 126971934 126972894 0.000000e+00 1530.0
6 TraesCS1B01G143600 chr1D 91.127 834 65 6 1 832 126971034 126971860 0.000000e+00 1122.0
7 TraesCS1B01G143600 chr6A 95.954 173 7 0 1960 2132 600118174 600118346 4.650000e-72 281.0
8 TraesCS1B01G143600 chr6A 88.038 209 19 3 991 1196 17943204 17943409 2.200000e-60 243.0
9 TraesCS1B01G143600 chr6B 95.930 172 7 0 1960 2131 48872141 48872312 1.670000e-71 279.0
10 TraesCS1B01G143600 chr6B 95.349 172 8 0 1960 2131 48979499 48979670 7.780000e-70 274.0
11 TraesCS1B01G143600 chr6B 87.317 205 20 3 991 1192 30324030 30324231 1.710000e-56 230.0
12 TraesCS1B01G143600 chr2B 96.951 164 5 0 1971 2134 677333007 677332844 2.160000e-70 276.0
13 TraesCS1B01G143600 chr2B 95.808 167 7 0 1971 2137 698296975 698296809 1.010000e-68 270.0
14 TraesCS1B01G143600 chr2A 97.516 161 4 0 1971 2131 725722277 725722117 2.160000e-70 276.0
15 TraesCS1B01G143600 chr3A 96.364 165 5 1 1971 2135 739720619 739720456 1.010000e-68 270.0
16 TraesCS1B01G143600 chr6D 88.517 209 18 3 991 1196 17317660 17317865 4.720000e-62 248.0
17 TraesCS1B01G143600 chr5D 95.238 63 3 0 1897 1959 449880959 449880897 1.400000e-17 100.0
18 TraesCS1B01G143600 chr7D 92.063 63 5 0 1897 1959 484290682 484290620 3.030000e-14 89.8
19 TraesCS1B01G143600 chr3D 87.500 72 7 2 1886 1957 164301936 164302005 5.060000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G143600 chr1B 195101396 195103608 2212 True 4087 4087 100.0000 1 2213 1 chr1B.!!$R1 2212
1 TraesCS1B01G143600 chr1A 142100663 142102469 1806 False 1331 1531 93.1500 1 1841 2 chr1A.!!$F2 1840
2 TraesCS1B01G143600 chr1D 126971034 126972894 1860 False 1326 1530 93.3355 1 1841 2 chr1D.!!$F1 1840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.251341 AGGCGCAAATCCAAAGAGGT 60.251 50.0 10.83 0.0 39.02 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2143 0.03213 CTAAGCATCTTAGCGGCGGA 59.968 55.0 9.78 0.0 40.15 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.771469 CTTTGTAGGCATGACAATGTTTGA 58.229 37.500 0.00 0.00 36.71 2.69
49 50 9.467258 CATGACAATGTTTGAAAGAATAACACT 57.533 29.630 0.00 0.00 34.90 3.55
79 80 4.850680 TCTGTTTTACACCACCTTGAAGT 58.149 39.130 0.00 0.00 0.00 3.01
93 94 5.534654 CACCTTGAAGTGAAAGGATGGTAAA 59.465 40.000 9.13 0.00 46.08 2.01
97 98 5.313712 TGAAGTGAAAGGATGGTAAACTCC 58.686 41.667 0.00 0.00 0.00 3.85
115 116 4.067896 ACTCCAACTAACTGCAACATCTG 58.932 43.478 0.00 0.00 0.00 2.90
122 123 5.994250 ACTAACTGCAACATCTGTATCCAT 58.006 37.500 0.00 0.00 0.00 3.41
168 169 1.372582 ACATACATGCAGACGCCTTG 58.627 50.000 0.00 0.00 37.32 3.61
189 190 0.251341 AGGCGCAAATCCAAAGAGGT 60.251 50.000 10.83 0.00 39.02 3.85
196 198 0.786435 AATCCAAAGAGGTGCCCCTT 59.214 50.000 0.00 0.00 42.86 3.95
365 367 1.270839 ACAACACCTGAGGAATGACGG 60.271 52.381 4.99 0.00 0.00 4.79
388 390 0.319900 GGCAAGCAGAGAGACAACGA 60.320 55.000 0.00 0.00 0.00 3.85
450 452 3.241701 GAAGACTGCGAAAGAGAGTGAG 58.758 50.000 0.00 0.00 0.00 3.51
485 487 5.338632 TCACCCAACTAGGTATTCTCTTCA 58.661 41.667 0.00 0.00 38.39 3.02
708 711 4.219033 CAAAATGGTAGAACGTGAGCAAC 58.781 43.478 0.00 0.00 0.00 4.17
709 712 2.831685 ATGGTAGAACGTGAGCAACA 57.168 45.000 0.00 0.00 0.00 3.33
764 767 0.251916 TTGATCCAACGGCTCGGATT 59.748 50.000 0.00 0.00 42.21 3.01
797 800 2.496899 ATCGAATGGCCAGAAGTTGT 57.503 45.000 13.05 0.00 0.00 3.32
798 801 2.270352 TCGAATGGCCAGAAGTTGTT 57.730 45.000 13.05 0.00 0.00 2.83
799 802 2.582052 TCGAATGGCCAGAAGTTGTTT 58.418 42.857 13.05 0.00 0.00 2.83
800 803 2.293122 TCGAATGGCCAGAAGTTGTTTG 59.707 45.455 13.05 2.43 0.00 2.93
801 804 2.607771 CGAATGGCCAGAAGTTGTTTGG 60.608 50.000 13.05 0.00 35.06 3.28
802 805 2.380064 ATGGCCAGAAGTTGTTTGGA 57.620 45.000 13.05 0.00 33.76 3.53
803 806 1.398692 TGGCCAGAAGTTGTTTGGAC 58.601 50.000 0.00 0.28 40.58 4.02
805 808 1.067060 GGCCAGAAGTTGTTTGGACAC 59.933 52.381 0.00 0.00 39.89 3.67
806 809 1.748493 GCCAGAAGTTGTTTGGACACA 59.252 47.619 2.62 0.00 34.98 3.72
807 810 2.223572 GCCAGAAGTTGTTTGGACACAG 60.224 50.000 2.62 0.00 34.98 3.66
809 812 3.694072 CCAGAAGTTGTTTGGACACAGAA 59.306 43.478 0.00 0.00 34.98 3.02
810 813 4.339247 CCAGAAGTTGTTTGGACACAGAAT 59.661 41.667 0.00 0.00 34.98 2.40
811 814 5.506317 CCAGAAGTTGTTTGGACACAGAATC 60.506 44.000 0.00 0.00 34.98 2.52
818 821 1.877637 TGGACACAGAATCAACGGTG 58.122 50.000 0.00 0.00 40.60 4.94
841 880 1.153765 GCTTCATTTCTTGCGGGGC 60.154 57.895 0.00 0.00 0.00 5.80
866 905 3.443052 TGGATTGGCATGATTGACCTTT 58.557 40.909 0.00 0.00 0.00 3.11
871 910 1.134946 GGCATGATTGACCTTTTCCCG 59.865 52.381 0.00 0.00 0.00 5.14
883 922 2.691526 CCTTTTCCCGTAAATAAGCCCC 59.308 50.000 0.00 0.00 0.00 5.80
934 973 3.152341 CACAGCACTTTTCATCTCCCTT 58.848 45.455 0.00 0.00 0.00 3.95
975 1014 2.949451 TCTCGTTGCTGGATCTTCTC 57.051 50.000 0.00 0.00 0.00 2.87
1300 1339 1.299392 CGATCGATCGCAAGCCTGA 60.299 57.895 32.34 0.00 43.84 3.86
1493 1537 2.774439 TCTTGTTTTTCCTTCTGCGC 57.226 45.000 0.00 0.00 0.00 6.09
1512 1556 6.317140 TCTGCGCTGATTTCTTCTCAATTTAT 59.683 34.615 13.46 0.00 0.00 1.40
1650 1701 2.611518 GGATCAGTCCTTTGTCAGTCG 58.388 52.381 0.00 0.00 41.60 4.18
1655 1706 0.582005 GTCCTTTGTCAGTCGTGCAC 59.418 55.000 6.82 6.82 0.00 4.57
1694 1745 9.952030 TCACATATTTTCACCTTCACATACTTA 57.048 29.630 0.00 0.00 0.00 2.24
1699 1750 7.979444 TTTTCACCTTCACATACTTAGGAAG 57.021 36.000 0.00 0.00 37.18 3.46
1719 1770 3.059884 AGATTACTGCGTTGTGTGAGTG 58.940 45.455 0.00 0.00 0.00 3.51
1817 1868 4.081697 CCACCCAATCCCAAAATAAGTGTC 60.082 45.833 0.00 0.00 0.00 3.67
1842 1893 5.644902 GGTTTAATTCAACCAAAACCGTG 57.355 39.130 15.30 0.00 45.12 4.94
1843 1894 4.508492 GGTTTAATTCAACCAAAACCGTGG 59.492 41.667 15.30 0.00 45.12 4.94
1844 1895 2.232756 AATTCAACCAAAACCGTGGC 57.767 45.000 0.00 0.00 43.00 5.01
1845 1896 1.115467 ATTCAACCAAAACCGTGGCA 58.885 45.000 0.00 0.00 43.00 4.92
1846 1897 0.895530 TTCAACCAAAACCGTGGCAA 59.104 45.000 0.00 0.00 43.00 4.52
1847 1898 1.115467 TCAACCAAAACCGTGGCAAT 58.885 45.000 0.00 0.00 43.00 3.56
1848 1899 1.482593 TCAACCAAAACCGTGGCAATT 59.517 42.857 0.00 0.00 43.00 2.32
1849 1900 2.693591 TCAACCAAAACCGTGGCAATTA 59.306 40.909 0.00 0.00 43.00 1.40
1850 1901 3.322254 TCAACCAAAACCGTGGCAATTAT 59.678 39.130 0.00 0.00 43.00 1.28
1851 1902 4.061596 CAACCAAAACCGTGGCAATTATT 58.938 39.130 0.00 0.00 43.00 1.40
1852 1903 4.344359 ACCAAAACCGTGGCAATTATTT 57.656 36.364 0.00 0.00 43.00 1.40
1853 1904 4.709250 ACCAAAACCGTGGCAATTATTTT 58.291 34.783 0.00 0.00 43.00 1.82
1854 1905 5.855045 ACCAAAACCGTGGCAATTATTTTA 58.145 33.333 0.00 0.00 43.00 1.52
1855 1906 6.468543 ACCAAAACCGTGGCAATTATTTTAT 58.531 32.000 0.00 0.00 43.00 1.40
1856 1907 6.937465 ACCAAAACCGTGGCAATTATTTTATT 59.063 30.769 0.00 0.00 43.00 1.40
1857 1908 7.445707 ACCAAAACCGTGGCAATTATTTTATTT 59.554 29.630 0.00 0.00 43.00 1.40
1858 1909 8.293157 CCAAAACCGTGGCAATTATTTTATTTT 58.707 29.630 0.00 0.00 0.00 1.82
1861 1912 9.930693 AAACCGTGGCAATTATTTTATTTTAGA 57.069 25.926 0.00 0.00 0.00 2.10
1863 1914 9.744468 ACCGTGGCAATTATTTTATTTTAGATC 57.256 29.630 0.00 0.00 0.00 2.75
1864 1915 8.901748 CCGTGGCAATTATTTTATTTTAGATCG 58.098 33.333 0.00 0.00 0.00 3.69
1865 1916 8.901748 CGTGGCAATTATTTTATTTTAGATCGG 58.098 33.333 0.00 0.00 0.00 4.18
1866 1917 9.959749 GTGGCAATTATTTTATTTTAGATCGGA 57.040 29.630 0.00 0.00 0.00 4.55
1868 1919 9.626045 GGCAATTATTTTATTTTAGATCGGAGG 57.374 33.333 0.00 0.00 0.00 4.30
1869 1920 9.626045 GCAATTATTTTATTTTAGATCGGAGGG 57.374 33.333 0.00 0.00 0.00 4.30
1872 1923 8.617290 TTATTTTATTTTAGATCGGAGGGAGC 57.383 34.615 0.00 0.00 0.00 4.70
1873 1924 5.623956 TTTATTTTAGATCGGAGGGAGCA 57.376 39.130 0.00 0.00 32.03 4.26
1874 1925 5.623956 TTATTTTAGATCGGAGGGAGCAA 57.376 39.130 0.00 0.00 32.03 3.91
1875 1926 2.981859 TTTAGATCGGAGGGAGCAAC 57.018 50.000 0.00 0.00 32.03 4.17
1876 1927 2.160721 TTAGATCGGAGGGAGCAACT 57.839 50.000 0.00 0.00 32.03 3.16
1877 1928 1.403814 TAGATCGGAGGGAGCAACTG 58.596 55.000 0.00 0.00 32.03 3.16
1878 1929 0.324738 AGATCGGAGGGAGCAACTGA 60.325 55.000 0.00 0.00 32.03 3.41
1879 1930 0.755686 GATCGGAGGGAGCAACTGAT 59.244 55.000 0.00 0.00 33.15 2.90
1880 1931 1.964223 GATCGGAGGGAGCAACTGATA 59.036 52.381 0.00 0.00 31.03 2.15
1881 1932 1.860641 TCGGAGGGAGCAACTGATAA 58.139 50.000 0.00 0.00 0.00 1.75
1882 1933 2.398588 TCGGAGGGAGCAACTGATAAT 58.601 47.619 0.00 0.00 0.00 1.28
1883 1934 2.771943 TCGGAGGGAGCAACTGATAATT 59.228 45.455 0.00 0.00 0.00 1.40
1884 1935 3.964688 TCGGAGGGAGCAACTGATAATTA 59.035 43.478 0.00 0.00 0.00 1.40
1885 1936 4.058817 CGGAGGGAGCAACTGATAATTAC 58.941 47.826 0.00 0.00 0.00 1.89
1886 1937 4.390264 GGAGGGAGCAACTGATAATTACC 58.610 47.826 0.00 0.00 0.00 2.85
1887 1938 4.141482 GGAGGGAGCAACTGATAATTACCA 60.141 45.833 0.00 0.00 0.00 3.25
1888 1939 4.781934 AGGGAGCAACTGATAATTACCAC 58.218 43.478 0.00 0.00 0.00 4.16
1889 1940 3.560068 GGGAGCAACTGATAATTACCACG 59.440 47.826 0.00 0.00 0.00 4.94
1890 1941 3.560068 GGAGCAACTGATAATTACCACGG 59.440 47.826 0.00 0.00 0.00 4.94
1891 1942 4.189231 GAGCAACTGATAATTACCACGGT 58.811 43.478 0.00 0.00 0.00 4.83
1892 1943 3.938963 AGCAACTGATAATTACCACGGTG 59.061 43.478 0.00 0.00 0.00 4.94
1893 1944 3.687698 GCAACTGATAATTACCACGGTGT 59.312 43.478 7.45 0.00 0.00 4.16
1894 1945 4.871557 GCAACTGATAATTACCACGGTGTA 59.128 41.667 7.45 0.00 0.00 2.90
1895 1946 5.526111 GCAACTGATAATTACCACGGTGTAT 59.474 40.000 7.45 0.00 0.00 2.29
1896 1947 6.702723 GCAACTGATAATTACCACGGTGTATA 59.297 38.462 7.45 0.00 0.00 1.47
1897 1948 7.095774 GCAACTGATAATTACCACGGTGTATAG 60.096 40.741 7.45 0.00 0.00 1.31
1898 1949 7.592885 ACTGATAATTACCACGGTGTATAGT 57.407 36.000 7.45 0.26 0.00 2.12
1899 1950 8.696043 ACTGATAATTACCACGGTGTATAGTA 57.304 34.615 7.45 0.00 0.00 1.82
1900 1951 9.135189 ACTGATAATTACCACGGTGTATAGTAA 57.865 33.333 7.45 8.50 0.00 2.24
1901 1952 9.970395 CTGATAATTACCACGGTGTATAGTAAA 57.030 33.333 7.45 0.00 0.00 2.01
1902 1953 9.970395 TGATAATTACCACGGTGTATAGTAAAG 57.030 33.333 7.45 0.00 0.00 1.85
1903 1954 9.971922 GATAATTACCACGGTGTATAGTAAAGT 57.028 33.333 7.45 4.30 0.00 2.66
1904 1955 9.971922 ATAATTACCACGGTGTATAGTAAAGTC 57.028 33.333 7.45 0.00 0.00 3.01
1905 1956 7.651027 ATTACCACGGTGTATAGTAAAGTCT 57.349 36.000 7.45 0.00 0.00 3.24
1906 1957 8.752005 ATTACCACGGTGTATAGTAAAGTCTA 57.248 34.615 7.45 0.00 0.00 2.59
1907 1958 8.752005 TTACCACGGTGTATAGTAAAGTCTAT 57.248 34.615 7.45 0.00 35.24 1.98
1908 1959 7.651027 ACCACGGTGTATAGTAAAGTCTATT 57.349 36.000 7.45 0.00 33.41 1.73
1909 1960 8.071177 ACCACGGTGTATAGTAAAGTCTATTT 57.929 34.615 7.45 0.00 33.41 1.40
1910 1961 8.534496 ACCACGGTGTATAGTAAAGTCTATTTT 58.466 33.333 7.45 0.00 33.41 1.82
1911 1962 9.028185 CCACGGTGTATAGTAAAGTCTATTTTC 57.972 37.037 7.45 0.00 33.41 2.29
1912 1963 9.577110 CACGGTGTATAGTAAAGTCTATTTTCA 57.423 33.333 0.00 0.00 33.41 2.69
1922 1973 9.628500 AGTAAAGTCTATTTTCAACCTTGAACT 57.372 29.630 0.00 0.00 45.99 3.01
1923 1974 9.665264 GTAAAGTCTATTTTCAACCTTGAACTG 57.335 33.333 0.00 0.00 45.99 3.16
1924 1975 6.884280 AGTCTATTTTCAACCTTGAACTGG 57.116 37.500 0.00 0.00 45.99 4.00
1925 1976 6.365520 AGTCTATTTTCAACCTTGAACTGGT 58.634 36.000 0.00 0.00 45.99 4.00
1926 1977 7.514721 AGTCTATTTTCAACCTTGAACTGGTA 58.485 34.615 0.00 0.00 45.99 3.25
1927 1978 7.661847 AGTCTATTTTCAACCTTGAACTGGTAG 59.338 37.037 0.00 2.25 45.99 3.18
1928 1979 7.660208 GTCTATTTTCAACCTTGAACTGGTAGA 59.340 37.037 0.00 4.13 45.99 2.59
1929 1980 6.635030 ATTTTCAACCTTGAACTGGTAGAC 57.365 37.500 0.00 0.00 45.99 2.59
1930 1981 4.764050 TTCAACCTTGAACTGGTAGACA 57.236 40.909 0.00 0.00 41.88 3.41
1931 1982 4.974645 TCAACCTTGAACTGGTAGACAT 57.025 40.909 0.00 0.00 36.69 3.06
1932 1983 6.428083 TTCAACCTTGAACTGGTAGACATA 57.572 37.500 0.00 0.00 41.88 2.29
1933 1984 6.037786 TCAACCTTGAACTGGTAGACATAG 57.962 41.667 0.00 0.00 36.69 2.23
1934 1985 5.542635 TCAACCTTGAACTGGTAGACATAGT 59.457 40.000 0.00 0.00 36.69 2.12
1935 1986 5.662674 ACCTTGAACTGGTAGACATAGTC 57.337 43.478 0.00 0.00 35.80 2.59
1936 1987 5.084519 ACCTTGAACTGGTAGACATAGTCA 58.915 41.667 0.00 0.00 35.80 3.41
1937 1988 5.542635 ACCTTGAACTGGTAGACATAGTCAA 59.457 40.000 0.00 0.00 35.80 3.18
1938 1989 6.042781 ACCTTGAACTGGTAGACATAGTCAAA 59.957 38.462 0.00 0.00 35.80 2.69
1939 1990 6.934645 CCTTGAACTGGTAGACATAGTCAAAA 59.065 38.462 0.00 0.00 34.60 2.44
1940 1991 7.444183 CCTTGAACTGGTAGACATAGTCAAAAA 59.556 37.037 0.00 0.00 34.60 1.94
1941 1992 7.724305 TGAACTGGTAGACATAGTCAAAAAC 57.276 36.000 0.00 0.00 34.60 2.43
1942 1993 6.422701 TGAACTGGTAGACATAGTCAAAAACG 59.577 38.462 0.00 0.00 34.60 3.60
1943 1994 6.092955 ACTGGTAGACATAGTCAAAAACGA 57.907 37.500 0.00 0.00 34.60 3.85
1944 1995 6.518493 ACTGGTAGACATAGTCAAAAACGAA 58.482 36.000 0.00 0.00 34.60 3.85
1945 1996 6.423001 ACTGGTAGACATAGTCAAAAACGAAC 59.577 38.462 0.00 0.00 34.60 3.95
1946 1997 5.697633 TGGTAGACATAGTCAAAAACGAACC 59.302 40.000 0.00 0.00 34.60 3.62
1947 1998 5.121298 GGTAGACATAGTCAAAAACGAACCC 59.879 44.000 0.00 0.00 34.60 4.11
1948 1999 4.969484 AGACATAGTCAAAAACGAACCCT 58.031 39.130 0.00 0.00 34.60 4.34
1949 2000 4.755123 AGACATAGTCAAAAACGAACCCTG 59.245 41.667 0.00 0.00 34.60 4.45
1950 2001 4.710324 ACATAGTCAAAAACGAACCCTGA 58.290 39.130 0.00 0.00 0.00 3.86
1951 2002 5.127491 ACATAGTCAAAAACGAACCCTGAA 58.873 37.500 0.00 0.00 0.00 3.02
1952 2003 5.768164 ACATAGTCAAAAACGAACCCTGAAT 59.232 36.000 0.00 0.00 0.00 2.57
1953 2004 6.264518 ACATAGTCAAAAACGAACCCTGAATT 59.735 34.615 0.00 0.00 0.00 2.17
1954 2005 5.592104 AGTCAAAAACGAACCCTGAATTT 57.408 34.783 0.00 0.00 0.00 1.82
1955 2006 5.972935 AGTCAAAAACGAACCCTGAATTTT 58.027 33.333 0.00 0.00 0.00 1.82
1956 2007 6.040247 AGTCAAAAACGAACCCTGAATTTTC 58.960 36.000 0.00 0.00 0.00 2.29
1957 2008 5.038033 TCAAAAACGAACCCTGAATTTTCG 58.962 37.500 7.49 7.49 45.96 3.46
1958 2009 4.904253 AAAACGAACCCTGAATTTTCGA 57.096 36.364 14.36 0.00 43.83 3.71
1959 2010 3.891056 AACGAACCCTGAATTTTCGAC 57.109 42.857 14.36 0.00 43.83 4.20
1960 2011 2.841215 ACGAACCCTGAATTTTCGACA 58.159 42.857 14.36 0.00 43.83 4.35
1961 2012 2.546789 ACGAACCCTGAATTTTCGACAC 59.453 45.455 14.36 0.00 43.83 3.67
1962 2013 2.806244 CGAACCCTGAATTTTCGACACT 59.194 45.455 3.66 0.00 43.83 3.55
1963 2014 3.363970 CGAACCCTGAATTTTCGACACTG 60.364 47.826 3.66 0.00 43.83 3.66
1964 2015 3.208747 ACCCTGAATTTTCGACACTGT 57.791 42.857 0.00 0.00 0.00 3.55
1965 2016 3.551846 ACCCTGAATTTTCGACACTGTT 58.448 40.909 0.00 0.00 0.00 3.16
1966 2017 3.951680 ACCCTGAATTTTCGACACTGTTT 59.048 39.130 0.00 0.00 0.00 2.83
1967 2018 4.401202 ACCCTGAATTTTCGACACTGTTTT 59.599 37.500 0.00 0.00 0.00 2.43
1968 2019 5.591067 ACCCTGAATTTTCGACACTGTTTTA 59.409 36.000 0.00 0.00 0.00 1.52
1969 2020 6.095720 ACCCTGAATTTTCGACACTGTTTTAA 59.904 34.615 0.00 0.00 0.00 1.52
1970 2021 6.975772 CCCTGAATTTTCGACACTGTTTTAAA 59.024 34.615 0.00 0.00 0.00 1.52
1971 2022 7.651704 CCCTGAATTTTCGACACTGTTTTAAAT 59.348 33.333 0.00 0.00 0.00 1.40
1972 2023 9.672086 CCTGAATTTTCGACACTGTTTTAAATA 57.328 29.630 0.00 0.00 0.00 1.40
1974 2025 9.176181 TGAATTTTCGACACTGTTTTAAATAGC 57.824 29.630 1.36 0.00 0.00 2.97
1975 2026 8.515473 AATTTTCGACACTGTTTTAAATAGCC 57.485 30.769 1.36 0.00 0.00 3.93
1976 2027 5.616488 TTCGACACTGTTTTAAATAGCCC 57.384 39.130 1.36 0.00 0.00 5.19
1977 2028 3.680937 TCGACACTGTTTTAAATAGCCCG 59.319 43.478 1.36 3.60 0.00 6.13
1978 2029 3.726782 CGACACTGTTTTAAATAGCCCGC 60.727 47.826 1.36 0.00 0.00 6.13
1979 2030 3.418047 ACACTGTTTTAAATAGCCCGCT 58.582 40.909 1.36 0.00 0.00 5.52
1980 2031 4.581868 ACACTGTTTTAAATAGCCCGCTA 58.418 39.130 0.00 0.00 0.00 4.26
1981 2032 5.190677 ACACTGTTTTAAATAGCCCGCTAT 58.809 37.500 3.31 3.31 40.63 2.97
1982 2033 6.350906 ACACTGTTTTAAATAGCCCGCTATA 58.649 36.000 9.56 0.00 38.20 1.31
1983 2034 6.482308 ACACTGTTTTAAATAGCCCGCTATAG 59.518 38.462 9.56 4.62 38.20 1.31
1984 2035 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
2004 2055 3.881630 CGTTTATAAAAAGGCTTGCGC 57.118 42.857 0.00 0.00 0.00 6.09
2005 2056 3.498082 CGTTTATAAAAAGGCTTGCGCT 58.502 40.909 9.73 0.00 36.09 5.92
2006 2057 4.654015 CGTTTATAAAAAGGCTTGCGCTA 58.346 39.130 9.73 0.00 36.09 4.26
2007 2058 5.090083 CGTTTATAAAAAGGCTTGCGCTAA 58.910 37.500 9.73 0.00 36.09 3.09
2008 2059 5.227184 CGTTTATAAAAAGGCTTGCGCTAAG 59.773 40.000 9.73 11.92 39.49 2.18
2009 2060 6.319399 GTTTATAAAAAGGCTTGCGCTAAGA 58.681 36.000 19.38 0.00 38.76 2.10
2010 2061 2.997485 AAAAAGGCTTGCGCTAAGAG 57.003 45.000 19.38 9.33 38.76 2.85
2011 2062 2.185004 AAAAGGCTTGCGCTAAGAGA 57.815 45.000 19.38 0.00 38.76 3.10
2012 2063 1.443802 AAAGGCTTGCGCTAAGAGAC 58.556 50.000 19.38 10.23 38.76 3.36
2013 2064 0.610687 AAGGCTTGCGCTAAGAGACT 59.389 50.000 19.38 12.08 38.76 3.24
2014 2065 0.610687 AGGCTTGCGCTAAGAGACTT 59.389 50.000 19.38 0.00 38.76 3.01
2015 2066 1.002544 AGGCTTGCGCTAAGAGACTTT 59.997 47.619 19.38 0.00 38.76 2.66
2016 2067 1.129437 GGCTTGCGCTAAGAGACTTTG 59.871 52.381 19.38 0.00 38.76 2.77
2017 2068 2.069273 GCTTGCGCTAAGAGACTTTGA 58.931 47.619 19.38 0.00 38.76 2.69
2018 2069 2.675348 GCTTGCGCTAAGAGACTTTGAT 59.325 45.455 19.38 0.00 38.76 2.57
2019 2070 3.242252 GCTTGCGCTAAGAGACTTTGATC 60.242 47.826 19.38 0.00 38.76 2.92
2020 2071 2.893637 TGCGCTAAGAGACTTTGATCC 58.106 47.619 9.73 0.00 0.00 3.36
2021 2072 2.233676 TGCGCTAAGAGACTTTGATCCA 59.766 45.455 9.73 0.00 0.00 3.41
2022 2073 3.262420 GCGCTAAGAGACTTTGATCCAA 58.738 45.455 0.00 0.00 0.00 3.53
2023 2074 3.684788 GCGCTAAGAGACTTTGATCCAAA 59.315 43.478 0.00 0.00 0.00 3.28
2024 2075 4.436183 GCGCTAAGAGACTTTGATCCAAAC 60.436 45.833 0.00 0.00 0.00 2.93
2025 2076 4.690748 CGCTAAGAGACTTTGATCCAAACA 59.309 41.667 0.00 0.00 0.00 2.83
2026 2077 5.179368 CGCTAAGAGACTTTGATCCAAACAA 59.821 40.000 0.00 0.00 0.00 2.83
2027 2078 6.293407 CGCTAAGAGACTTTGATCCAAACAAA 60.293 38.462 0.00 0.00 36.15 2.83
2028 2079 7.573843 CGCTAAGAGACTTTGATCCAAACAAAT 60.574 37.037 0.00 0.00 36.79 2.32
2029 2080 7.540055 GCTAAGAGACTTTGATCCAAACAAATG 59.460 37.037 0.00 0.00 36.79 2.32
2030 2081 7.587037 AAGAGACTTTGATCCAAACAAATGA 57.413 32.000 0.00 0.00 36.79 2.57
2031 2082 7.587037 AGAGACTTTGATCCAAACAAATGAA 57.413 32.000 0.00 0.00 36.79 2.57
2032 2083 7.428826 AGAGACTTTGATCCAAACAAATGAAC 58.571 34.615 0.00 0.00 36.79 3.18
2033 2084 7.068593 AGAGACTTTGATCCAAACAAATGAACA 59.931 33.333 0.00 0.00 36.79 3.18
2034 2085 7.555087 AGACTTTGATCCAAACAAATGAACAA 58.445 30.769 0.00 0.00 36.79 2.83
2035 2086 8.040132 AGACTTTGATCCAAACAAATGAACAAA 58.960 29.630 0.00 0.00 36.79 2.83
2036 2087 7.973601 ACTTTGATCCAAACAAATGAACAAAC 58.026 30.769 0.00 0.00 36.79 2.93
2037 2088 7.605691 ACTTTGATCCAAACAAATGAACAAACA 59.394 29.630 0.00 0.00 36.79 2.83
2038 2089 8.503458 TTTGATCCAAACAAATGAACAAACAT 57.497 26.923 0.00 0.00 33.25 2.71
2039 2090 8.503458 TTGATCCAAACAAATGAACAAACATT 57.497 26.923 0.00 0.00 41.43 2.71
2040 2091 8.503458 TGATCCAAACAAATGAACAAACATTT 57.497 26.923 0.00 0.00 46.85 2.32
2041 2092 8.610896 TGATCCAAACAAATGAACAAACATTTC 58.389 29.630 0.00 0.00 45.00 2.17
2042 2093 7.912056 TCCAAACAAATGAACAAACATTTCA 57.088 28.000 0.00 0.00 45.00 2.69
2043 2094 8.327941 TCCAAACAAATGAACAAACATTTCAA 57.672 26.923 0.00 0.00 45.00 2.69
2044 2095 8.786898 TCCAAACAAATGAACAAACATTTCAAA 58.213 25.926 0.00 0.00 45.00 2.69
2045 2096 9.570488 CCAAACAAATGAACAAACATTTCAAAT 57.430 25.926 0.00 0.00 45.00 2.32
2048 2099 9.934190 AACAAATGAACAAACATTTCAAATAGC 57.066 25.926 0.00 0.00 45.00 2.97
2049 2100 8.274939 ACAAATGAACAAACATTTCAAATAGCG 58.725 29.630 0.00 0.00 45.00 4.26
2050 2101 5.820926 TGAACAAACATTTCAAATAGCGC 57.179 34.783 0.00 0.00 29.89 5.92
2051 2102 4.381270 TGAACAAACATTTCAAATAGCGCG 59.619 37.500 0.00 0.00 29.89 6.86
2052 2103 2.661195 ACAAACATTTCAAATAGCGCGC 59.339 40.909 26.66 26.66 0.00 6.86
2053 2104 2.916716 CAAACATTTCAAATAGCGCGCT 59.083 40.909 38.01 38.01 0.00 5.92
2054 2105 4.094911 CAAACATTTCAAATAGCGCGCTA 58.905 39.130 39.72 39.72 0.00 4.26
2055 2106 4.552166 AACATTTCAAATAGCGCGCTAT 57.448 36.364 40.32 40.32 40.63 2.97
2056 2107 5.666969 AACATTTCAAATAGCGCGCTATA 57.333 34.783 43.81 31.73 38.20 1.31
2057 2108 5.269459 ACATTTCAAATAGCGCGCTATAG 57.731 39.130 43.81 37.02 38.20 1.31
2058 2109 3.788434 TTTCAAATAGCGCGCTATAGC 57.212 42.857 43.81 15.09 38.20 2.97
2059 2110 2.724977 TCAAATAGCGCGCTATAGCT 57.275 45.000 43.81 30.41 46.53 3.32
2060 2111 2.596452 TCAAATAGCGCGCTATAGCTC 58.404 47.619 43.81 13.77 43.44 4.09
2061 2112 1.656095 CAAATAGCGCGCTATAGCTCC 59.344 52.381 43.81 10.26 43.44 4.70
2062 2113 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
2065 2116 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
2073 2124 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
2074 2125 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
2075 2126 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
2076 2127 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
2077 2128 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
2085 2136 5.709011 CTATAGCACGCTATAGCATTTGG 57.291 43.478 25.42 9.98 46.26 3.28
2086 2137 2.620251 AGCACGCTATAGCATTTGGA 57.380 45.000 23.99 0.00 42.21 3.53
2087 2138 2.917933 AGCACGCTATAGCATTTGGAA 58.082 42.857 23.99 0.00 42.21 3.53
2088 2139 2.874701 AGCACGCTATAGCATTTGGAAG 59.125 45.455 23.99 7.87 42.21 3.46
2089 2140 2.872245 GCACGCTATAGCATTTGGAAGA 59.128 45.455 23.99 0.00 42.21 2.87
2090 2141 3.059325 GCACGCTATAGCATTTGGAAGAG 60.059 47.826 23.99 6.48 42.21 2.85
2091 2142 3.496130 CACGCTATAGCATTTGGAAGAGG 59.504 47.826 23.99 5.98 42.21 3.69
2092 2143 3.134804 ACGCTATAGCATTTGGAAGAGGT 59.865 43.478 23.99 6.60 42.21 3.85
2093 2144 3.743396 CGCTATAGCATTTGGAAGAGGTC 59.257 47.826 23.99 0.00 42.21 3.85
2094 2145 4.068599 GCTATAGCATTTGGAAGAGGTCC 58.931 47.826 20.01 0.00 43.38 4.46
2095 2146 5.330561 GCTATAGCATTTGGAAGAGGTCCG 61.331 50.000 20.01 0.00 44.91 4.79
2101 2152 3.145551 GGAAGAGGTCCGCCGCTA 61.146 66.667 0.00 0.00 44.34 4.26
2102 2153 2.718073 GGAAGAGGTCCGCCGCTAA 61.718 63.158 0.00 0.00 44.34 3.09
2103 2154 1.227002 GAAGAGGTCCGCCGCTAAG 60.227 63.158 0.00 0.00 44.34 2.18
2104 2155 1.664321 GAAGAGGTCCGCCGCTAAGA 61.664 60.000 0.00 0.00 44.34 2.10
2105 2156 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
2106 2157 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
2107 2158 2.967615 GGTCCGCCGCTAAGATGC 60.968 66.667 0.00 0.00 0.00 3.91
2108 2159 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
2109 2160 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
2110 2161 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
2111 2162 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
2112 2163 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
2127 2178 5.873179 TGCTTAGCGCACTATTTAAAACT 57.127 34.783 11.47 0.00 45.47 2.66
2128 2179 6.971527 TGCTTAGCGCACTATTTAAAACTA 57.028 33.333 11.47 0.00 45.47 2.24
2129 2180 7.548196 TGCTTAGCGCACTATTTAAAACTAT 57.452 32.000 11.47 0.00 45.47 2.12
2130 2181 7.406553 TGCTTAGCGCACTATTTAAAACTATG 58.593 34.615 11.47 0.00 45.47 2.23
2131 2182 7.279090 TGCTTAGCGCACTATTTAAAACTATGA 59.721 33.333 11.47 0.00 45.47 2.15
2132 2183 8.283291 GCTTAGCGCACTATTTAAAACTATGAT 58.717 33.333 11.47 0.00 38.92 2.45
2136 2187 9.503427 AGCGCACTATTTAAAACTATGATTTTC 57.497 29.630 11.47 0.00 33.80 2.29
2137 2188 8.461398 GCGCACTATTTAAAACTATGATTTTCG 58.539 33.333 0.30 0.00 33.80 3.46
2138 2189 9.697250 CGCACTATTTAAAACTATGATTTTCGA 57.303 29.630 0.00 0.00 33.80 3.71
2148 2199 8.511604 AAACTATGATTTTCGATCCATGAAGT 57.488 30.769 0.00 0.00 0.00 3.01
2149 2200 8.511604 AACTATGATTTTCGATCCATGAAGTT 57.488 30.769 0.00 0.00 0.00 2.66
2150 2201 7.923888 ACTATGATTTTCGATCCATGAAGTTG 58.076 34.615 0.00 0.00 0.00 3.16
2151 2202 7.770433 ACTATGATTTTCGATCCATGAAGTTGA 59.230 33.333 0.00 0.00 0.00 3.18
2152 2203 6.182039 TGATTTTCGATCCATGAAGTTGAC 57.818 37.500 0.00 0.00 0.00 3.18
2153 2204 5.704978 TGATTTTCGATCCATGAAGTTGACA 59.295 36.000 0.00 0.00 0.00 3.58
2154 2205 5.356882 TTTTCGATCCATGAAGTTGACAC 57.643 39.130 0.00 0.00 0.00 3.67
2155 2206 2.972625 TCGATCCATGAAGTTGACACC 58.027 47.619 0.00 0.00 0.00 4.16
2156 2207 2.009774 CGATCCATGAAGTTGACACCC 58.990 52.381 0.00 0.00 0.00 4.61
2157 2208 2.369394 GATCCATGAAGTTGACACCCC 58.631 52.381 0.00 0.00 0.00 4.95
2158 2209 0.036164 TCCATGAAGTTGACACCCCG 59.964 55.000 0.00 0.00 0.00 5.73
2159 2210 0.250727 CCATGAAGTTGACACCCCGT 60.251 55.000 0.00 0.00 0.00 5.28
2160 2211 1.002659 CCATGAAGTTGACACCCCGTA 59.997 52.381 0.00 0.00 0.00 4.02
2161 2212 2.073816 CATGAAGTTGACACCCCGTAC 58.926 52.381 0.00 0.00 0.00 3.67
2162 2213 1.416243 TGAAGTTGACACCCCGTACT 58.584 50.000 0.00 0.00 0.00 2.73
2163 2214 1.342174 TGAAGTTGACACCCCGTACTC 59.658 52.381 0.00 0.00 0.00 2.59
2164 2215 1.342174 GAAGTTGACACCCCGTACTCA 59.658 52.381 0.00 0.00 0.00 3.41
2165 2216 0.677842 AGTTGACACCCCGTACTCAC 59.322 55.000 0.00 0.00 0.00 3.51
2166 2217 0.677842 GTTGACACCCCGTACTCACT 59.322 55.000 0.00 0.00 0.00 3.41
2167 2218 1.888512 GTTGACACCCCGTACTCACTA 59.111 52.381 0.00 0.00 0.00 2.74
2168 2219 2.291209 TGACACCCCGTACTCACTAA 57.709 50.000 0.00 0.00 0.00 2.24
2169 2220 2.811410 TGACACCCCGTACTCACTAAT 58.189 47.619 0.00 0.00 0.00 1.73
2170 2221 2.756760 TGACACCCCGTACTCACTAATC 59.243 50.000 0.00 0.00 0.00 1.75
2171 2222 2.100418 GACACCCCGTACTCACTAATCC 59.900 54.545 0.00 0.00 0.00 3.01
2172 2223 2.292061 ACACCCCGTACTCACTAATCCT 60.292 50.000 0.00 0.00 0.00 3.24
2173 2224 2.100916 CACCCCGTACTCACTAATCCTG 59.899 54.545 0.00 0.00 0.00 3.86
2174 2225 1.068741 CCCCGTACTCACTAATCCTGC 59.931 57.143 0.00 0.00 0.00 4.85
2175 2226 1.068741 CCCGTACTCACTAATCCTGCC 59.931 57.143 0.00 0.00 0.00 4.85
2176 2227 2.032620 CCGTACTCACTAATCCTGCCT 58.967 52.381 0.00 0.00 0.00 4.75
2177 2228 3.220110 CCGTACTCACTAATCCTGCCTA 58.780 50.000 0.00 0.00 0.00 3.93
2178 2229 3.635373 CCGTACTCACTAATCCTGCCTAA 59.365 47.826 0.00 0.00 0.00 2.69
2179 2230 4.281182 CCGTACTCACTAATCCTGCCTAAT 59.719 45.833 0.00 0.00 0.00 1.73
2180 2231 5.223382 CGTACTCACTAATCCTGCCTAATG 58.777 45.833 0.00 0.00 0.00 1.90
2181 2232 5.221263 CGTACTCACTAATCCTGCCTAATGT 60.221 44.000 0.00 0.00 0.00 2.71
2182 2233 5.283457 ACTCACTAATCCTGCCTAATGTC 57.717 43.478 0.00 0.00 0.00 3.06
2183 2234 4.716784 ACTCACTAATCCTGCCTAATGTCA 59.283 41.667 0.00 0.00 0.00 3.58
2184 2235 5.189736 ACTCACTAATCCTGCCTAATGTCAA 59.810 40.000 0.00 0.00 0.00 3.18
2185 2236 5.428253 TCACTAATCCTGCCTAATGTCAAC 58.572 41.667 0.00 0.00 0.00 3.18
2186 2237 4.576463 CACTAATCCTGCCTAATGTCAACC 59.424 45.833 0.00 0.00 0.00 3.77
2187 2238 2.736670 ATCCTGCCTAATGTCAACCC 57.263 50.000 0.00 0.00 0.00 4.11
2188 2239 1.668826 TCCTGCCTAATGTCAACCCT 58.331 50.000 0.00 0.00 0.00 4.34
2189 2240 2.840511 TCCTGCCTAATGTCAACCCTA 58.159 47.619 0.00 0.00 0.00 3.53
2190 2241 3.393687 TCCTGCCTAATGTCAACCCTAT 58.606 45.455 0.00 0.00 0.00 2.57
2191 2242 4.562767 TCCTGCCTAATGTCAACCCTATA 58.437 43.478 0.00 0.00 0.00 1.31
2192 2243 4.347000 TCCTGCCTAATGTCAACCCTATAC 59.653 45.833 0.00 0.00 0.00 1.47
2193 2244 4.505039 CCTGCCTAATGTCAACCCTATACC 60.505 50.000 0.00 0.00 0.00 2.73
2194 2245 3.070446 TGCCTAATGTCAACCCTATACCG 59.930 47.826 0.00 0.00 0.00 4.02
2195 2246 3.322828 GCCTAATGTCAACCCTATACCGA 59.677 47.826 0.00 0.00 0.00 4.69
2196 2247 4.798593 GCCTAATGTCAACCCTATACCGAC 60.799 50.000 0.00 0.00 0.00 4.79
2197 2248 3.832615 AATGTCAACCCTATACCGACC 57.167 47.619 0.00 0.00 0.00 4.79
2198 2249 1.488390 TGTCAACCCTATACCGACCC 58.512 55.000 0.00 0.00 0.00 4.46
2199 2250 1.007479 TGTCAACCCTATACCGACCCT 59.993 52.381 0.00 0.00 0.00 4.34
2200 2251 1.411612 GTCAACCCTATACCGACCCTG 59.588 57.143 0.00 0.00 0.00 4.45
2201 2252 0.756903 CAACCCTATACCGACCCTGG 59.243 60.000 0.00 0.00 0.00 4.45
2202 2253 0.638292 AACCCTATACCGACCCTGGA 59.362 55.000 0.00 0.00 0.00 3.86
2203 2254 0.865362 ACCCTATACCGACCCTGGAT 59.135 55.000 0.00 0.00 0.00 3.41
2204 2255 1.267121 CCCTATACCGACCCTGGATG 58.733 60.000 0.00 0.00 0.00 3.51
2205 2256 1.482553 CCCTATACCGACCCTGGATGT 60.483 57.143 0.00 0.00 0.00 3.06
2206 2257 2.225192 CCCTATACCGACCCTGGATGTA 60.225 54.545 0.00 0.00 0.00 2.29
2207 2258 3.565890 CCCTATACCGACCCTGGATGTAT 60.566 52.174 0.00 0.00 0.00 2.29
2208 2259 4.094476 CCTATACCGACCCTGGATGTATT 58.906 47.826 0.00 0.00 0.00 1.89
2209 2260 4.530946 CCTATACCGACCCTGGATGTATTT 59.469 45.833 0.00 0.00 0.00 1.40
2210 2261 2.710096 ACCGACCCTGGATGTATTTG 57.290 50.000 0.00 0.00 0.00 2.32
2211 2262 1.913419 ACCGACCCTGGATGTATTTGT 59.087 47.619 0.00 0.00 0.00 2.83
2212 2263 2.307686 ACCGACCCTGGATGTATTTGTT 59.692 45.455 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.842676 ACAGAGGGAGAAAGTGTTATTCTTT 58.157 36.000 0.00 0.00 37.26 2.52
49 50 4.457466 GTGGTGTAAAACAGAGGGAGAAA 58.543 43.478 0.00 0.00 0.00 2.52
79 80 5.319043 AGTTGGAGTTTACCATCCTTTCA 57.681 39.130 0.00 0.00 39.82 2.69
93 94 4.067896 CAGATGTTGCAGTTAGTTGGAGT 58.932 43.478 0.00 0.00 0.00 3.85
97 98 5.643348 TGGATACAGATGTTGCAGTTAGTTG 59.357 40.000 0.00 0.00 46.17 3.16
115 116 5.240183 ACTGCAATGCACATAAGATGGATAC 59.760 40.000 2.72 0.00 33.79 2.24
122 123 6.543100 TGATATGAACTGCAATGCACATAAGA 59.457 34.615 17.09 7.45 31.98 2.10
168 169 1.401905 CCTCTTTGGATTTGCGCCTAC 59.598 52.381 4.18 0.00 38.35 3.18
196 198 3.822192 CATCGTCGTCCGCCTCCA 61.822 66.667 0.00 0.00 36.19 3.86
212 214 0.893270 CCCAAGCAACCCATTCGACA 60.893 55.000 0.00 0.00 0.00 4.35
222 224 2.991540 GAGGCCACCCCAAGCAAC 60.992 66.667 5.01 0.00 35.39 4.17
365 367 4.087892 TCTCTCTGCTTGCCCCGC 62.088 66.667 0.00 0.00 0.00 6.13
388 390 2.125673 CGTCTTTGGATCCGGCGT 60.126 61.111 7.39 0.00 0.00 5.68
415 417 1.344763 AGTCTTCACTTCGTCCCCTTG 59.655 52.381 0.00 0.00 0.00 3.61
431 433 2.509569 TCTCACTCTCTTTCGCAGTCT 58.490 47.619 0.00 0.00 0.00 3.24
474 476 3.114065 CGCGTAAGGGTGAAGAGAATAC 58.886 50.000 0.00 0.00 46.48 1.89
475 477 3.431922 CGCGTAAGGGTGAAGAGAATA 57.568 47.619 0.00 0.00 46.48 1.75
477 479 3.806591 CGCGTAAGGGTGAAGAGAA 57.193 52.632 0.00 0.00 46.48 2.87
503 505 1.745115 CGTGGCATTCGTGGATGGT 60.745 57.895 0.00 0.00 0.00 3.55
634 637 1.374125 CCGCTGTTGTCATCGACCA 60.374 57.895 0.00 0.00 35.57 4.02
661 664 1.380785 TATGGAAGTCGGGGTCGCT 60.381 57.895 0.00 0.00 36.13 4.93
662 665 1.067582 CTATGGAAGTCGGGGTCGC 59.932 63.158 0.00 0.00 36.13 5.19
708 711 5.473796 GCAATGAATAGTGCCCAATTTTG 57.526 39.130 0.00 0.00 41.77 2.44
788 791 4.963276 TTCTGTGTCCAAACAACTTCTG 57.037 40.909 0.00 0.00 37.08 3.02
797 800 2.616376 CACCGTTGATTCTGTGTCCAAA 59.384 45.455 0.00 0.00 0.00 3.28
798 801 2.217750 CACCGTTGATTCTGTGTCCAA 58.782 47.619 0.00 0.00 0.00 3.53
799 802 1.542328 CCACCGTTGATTCTGTGTCCA 60.542 52.381 0.00 0.00 0.00 4.02
800 803 1.156736 CCACCGTTGATTCTGTGTCC 58.843 55.000 0.00 0.00 0.00 4.02
801 804 1.156736 CCCACCGTTGATTCTGTGTC 58.843 55.000 0.00 0.00 0.00 3.67
802 805 0.250727 CCCCACCGTTGATTCTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
803 806 0.960364 CCCCCACCGTTGATTCTGTG 60.960 60.000 0.00 0.00 0.00 3.66
805 808 4.319133 CCCCCACCGTTGATTCTG 57.681 61.111 0.00 0.00 0.00 3.02
826 829 4.509902 TTGCCCCGCAAGAAATGA 57.490 50.000 0.00 0.00 43.99 2.57
835 838 2.500646 CCAATCCAATTGCCCCGC 59.499 61.111 0.00 0.00 38.92 6.13
841 880 4.124238 GGTCAATCATGCCAATCCAATTG 58.876 43.478 0.00 0.00 39.94 2.32
866 905 1.213430 CCAGGGGCTTATTTACGGGAA 59.787 52.381 0.00 0.00 0.00 3.97
871 910 4.381612 GCTTGTTTCCAGGGGCTTATTTAC 60.382 45.833 0.00 0.00 0.00 2.01
950 989 2.165437 AGATCCAGCAACGAGAAGAGAC 59.835 50.000 0.00 0.00 0.00 3.36
975 1014 1.678970 CCCTTTTTCCTCCCCTGCG 60.679 63.158 0.00 0.00 0.00 5.18
1291 1330 1.444119 TTGACACCGTTCAGGCTTGC 61.444 55.000 0.00 0.00 46.52 4.01
1493 1537 9.661187 CCATTCGATAAATTGAGAAGAAATCAG 57.339 33.333 0.00 0.00 0.00 2.90
1512 1556 1.067565 GCCGATAGCAGATCCATTCGA 60.068 52.381 0.00 0.00 42.97 3.71
1539 1583 0.239082 CGCAGCAATCAAGACAGCAA 59.761 50.000 0.00 0.00 0.00 3.91
1638 1682 1.941812 GGTGCACGACTGACAAAGG 59.058 57.895 11.45 0.00 0.00 3.11
1650 1701 2.349886 GTGATCTTCAATCTCGGTGCAC 59.650 50.000 8.80 8.80 0.00 4.57
1655 1706 8.066595 GTGAAAATATGTGATCTTCAATCTCGG 58.933 37.037 0.00 0.00 0.00 4.63
1694 1745 3.067106 CACACAACGCAGTAATCTTCCT 58.933 45.455 0.00 0.00 45.00 3.36
1699 1750 2.800544 ACACTCACACAACGCAGTAATC 59.199 45.455 0.00 0.00 45.00 1.75
1719 1770 2.715046 TGATCATGGCCACTCTTGAAC 58.285 47.619 8.16 7.56 0.00 3.18
1842 1893 9.626045 CCTCCGATCTAAAATAAAATAATTGCC 57.374 33.333 0.00 0.00 0.00 4.52
1843 1894 9.626045 CCCTCCGATCTAAAATAAAATAATTGC 57.374 33.333 0.00 0.00 0.00 3.56
1846 1897 9.232473 GCTCCCTCCGATCTAAAATAAAATAAT 57.768 33.333 0.00 0.00 0.00 1.28
1847 1898 8.215050 TGCTCCCTCCGATCTAAAATAAAATAA 58.785 33.333 0.00 0.00 0.00 1.40
1848 1899 7.741785 TGCTCCCTCCGATCTAAAATAAAATA 58.258 34.615 0.00 0.00 0.00 1.40
1849 1900 6.601332 TGCTCCCTCCGATCTAAAATAAAAT 58.399 36.000 0.00 0.00 0.00 1.82
1850 1901 5.996644 TGCTCCCTCCGATCTAAAATAAAA 58.003 37.500 0.00 0.00 0.00 1.52
1851 1902 5.623956 TGCTCCCTCCGATCTAAAATAAA 57.376 39.130 0.00 0.00 0.00 1.40
1852 1903 5.130477 AGTTGCTCCCTCCGATCTAAAATAA 59.870 40.000 0.00 0.00 0.00 1.40
1853 1904 4.654262 AGTTGCTCCCTCCGATCTAAAATA 59.346 41.667 0.00 0.00 0.00 1.40
1854 1905 3.456277 AGTTGCTCCCTCCGATCTAAAAT 59.544 43.478 0.00 0.00 0.00 1.82
1855 1906 2.838202 AGTTGCTCCCTCCGATCTAAAA 59.162 45.455 0.00 0.00 0.00 1.52
1856 1907 2.168521 CAGTTGCTCCCTCCGATCTAAA 59.831 50.000 0.00 0.00 0.00 1.85
1857 1908 1.757118 CAGTTGCTCCCTCCGATCTAA 59.243 52.381 0.00 0.00 0.00 2.10
1858 1909 1.063942 TCAGTTGCTCCCTCCGATCTA 60.064 52.381 0.00 0.00 0.00 1.98
1859 1910 0.324738 TCAGTTGCTCCCTCCGATCT 60.325 55.000 0.00 0.00 0.00 2.75
1860 1911 0.755686 ATCAGTTGCTCCCTCCGATC 59.244 55.000 0.00 0.00 0.00 3.69
1861 1912 2.088104 TATCAGTTGCTCCCTCCGAT 57.912 50.000 0.00 0.00 0.00 4.18
1862 1913 1.860641 TTATCAGTTGCTCCCTCCGA 58.139 50.000 0.00 0.00 0.00 4.55
1863 1914 2.918712 ATTATCAGTTGCTCCCTCCG 57.081 50.000 0.00 0.00 0.00 4.63
1864 1915 4.141482 TGGTAATTATCAGTTGCTCCCTCC 60.141 45.833 0.00 0.00 0.00 4.30
1865 1916 4.816925 GTGGTAATTATCAGTTGCTCCCTC 59.183 45.833 0.00 0.00 0.00 4.30
1866 1917 4.683400 CGTGGTAATTATCAGTTGCTCCCT 60.683 45.833 0.00 0.00 0.00 4.20
1867 1918 3.560068 CGTGGTAATTATCAGTTGCTCCC 59.440 47.826 0.00 0.00 0.00 4.30
1868 1919 3.560068 CCGTGGTAATTATCAGTTGCTCC 59.440 47.826 0.00 0.00 0.00 4.70
1869 1920 4.034048 CACCGTGGTAATTATCAGTTGCTC 59.966 45.833 0.00 0.00 0.00 4.26
1870 1921 3.938963 CACCGTGGTAATTATCAGTTGCT 59.061 43.478 0.00 0.00 0.00 3.91
1871 1922 3.687698 ACACCGTGGTAATTATCAGTTGC 59.312 43.478 0.00 0.00 0.00 4.17
1872 1923 7.924412 ACTATACACCGTGGTAATTATCAGTTG 59.076 37.037 0.00 0.00 0.00 3.16
1873 1924 8.015185 ACTATACACCGTGGTAATTATCAGTT 57.985 34.615 0.00 0.00 0.00 3.16
1874 1925 7.592885 ACTATACACCGTGGTAATTATCAGT 57.407 36.000 0.00 0.00 0.00 3.41
1875 1926 9.970395 TTTACTATACACCGTGGTAATTATCAG 57.030 33.333 0.00 0.00 0.00 2.90
1876 1927 9.970395 CTTTACTATACACCGTGGTAATTATCA 57.030 33.333 3.03 0.00 0.00 2.15
1877 1928 9.971922 ACTTTACTATACACCGTGGTAATTATC 57.028 33.333 3.03 0.00 0.00 1.75
1878 1929 9.971922 GACTTTACTATACACCGTGGTAATTAT 57.028 33.333 3.03 0.00 0.00 1.28
1879 1930 9.189156 AGACTTTACTATACACCGTGGTAATTA 57.811 33.333 3.03 0.00 0.00 1.40
1880 1931 8.071177 AGACTTTACTATACACCGTGGTAATT 57.929 34.615 3.03 0.00 0.00 1.40
1881 1932 7.651027 AGACTTTACTATACACCGTGGTAAT 57.349 36.000 3.03 0.00 0.00 1.89
1882 1933 8.752005 ATAGACTTTACTATACACCGTGGTAA 57.248 34.615 3.03 0.00 32.21 2.85
1883 1934 8.752005 AATAGACTTTACTATACACCGTGGTA 57.248 34.615 3.03 0.00 33.42 3.25
1884 1935 7.651027 AATAGACTTTACTATACACCGTGGT 57.349 36.000 3.03 0.00 33.42 4.16
1885 1936 8.937634 AAAATAGACTTTACTATACACCGTGG 57.062 34.615 3.03 0.00 33.42 4.94
1886 1937 9.577110 TGAAAATAGACTTTACTATACACCGTG 57.423 33.333 0.00 0.00 33.42 4.94
1909 1960 4.764050 TGTCTACCAGTTCAAGGTTGAA 57.236 40.909 0.87 0.87 41.34 2.69
1910 1961 4.974645 ATGTCTACCAGTTCAAGGTTGA 57.025 40.909 0.00 0.00 40.54 3.18
1911 1962 5.794894 ACTATGTCTACCAGTTCAAGGTTG 58.205 41.667 0.00 0.00 40.54 3.77
1912 1963 5.542635 TGACTATGTCTACCAGTTCAAGGTT 59.457 40.000 0.00 0.00 40.54 3.50
1913 1964 5.084519 TGACTATGTCTACCAGTTCAAGGT 58.915 41.667 0.00 0.00 43.14 3.50
1914 1965 5.661056 TGACTATGTCTACCAGTTCAAGG 57.339 43.478 0.00 0.00 33.15 3.61
1915 1966 7.962964 TTTTGACTATGTCTACCAGTTCAAG 57.037 36.000 0.00 0.00 33.15 3.02
1916 1967 7.042321 CGTTTTTGACTATGTCTACCAGTTCAA 60.042 37.037 0.00 0.00 33.15 2.69
1917 1968 6.422701 CGTTTTTGACTATGTCTACCAGTTCA 59.577 38.462 0.00 0.00 33.15 3.18
1918 1969 6.643770 TCGTTTTTGACTATGTCTACCAGTTC 59.356 38.462 0.00 0.00 33.15 3.01
1919 1970 6.518493 TCGTTTTTGACTATGTCTACCAGTT 58.482 36.000 0.00 0.00 33.15 3.16
1920 1971 6.092955 TCGTTTTTGACTATGTCTACCAGT 57.907 37.500 0.00 0.00 33.15 4.00
1921 1972 6.128634 GGTTCGTTTTTGACTATGTCTACCAG 60.129 42.308 0.00 0.00 33.15 4.00
1922 1973 5.697633 GGTTCGTTTTTGACTATGTCTACCA 59.302 40.000 0.00 0.00 33.15 3.25
1923 1974 5.121298 GGGTTCGTTTTTGACTATGTCTACC 59.879 44.000 0.00 0.00 33.15 3.18
1924 1975 5.930569 AGGGTTCGTTTTTGACTATGTCTAC 59.069 40.000 0.00 0.00 33.15 2.59
1925 1976 5.929992 CAGGGTTCGTTTTTGACTATGTCTA 59.070 40.000 0.00 0.00 33.15 2.59
1926 1977 4.755123 CAGGGTTCGTTTTTGACTATGTCT 59.245 41.667 0.00 0.00 33.15 3.41
1927 1978 4.753107 TCAGGGTTCGTTTTTGACTATGTC 59.247 41.667 0.00 0.00 0.00 3.06
1928 1979 4.710324 TCAGGGTTCGTTTTTGACTATGT 58.290 39.130 0.00 0.00 0.00 2.29
1929 1980 5.682943 TTCAGGGTTCGTTTTTGACTATG 57.317 39.130 0.00 0.00 0.00 2.23
1930 1981 6.894339 AATTCAGGGTTCGTTTTTGACTAT 57.106 33.333 0.00 0.00 0.00 2.12
1931 1982 6.702716 AAATTCAGGGTTCGTTTTTGACTA 57.297 33.333 0.00 0.00 0.00 2.59
1932 1983 5.592104 AAATTCAGGGTTCGTTTTTGACT 57.408 34.783 0.00 0.00 0.00 3.41
1933 1984 5.051973 CGAAAATTCAGGGTTCGTTTTTGAC 60.052 40.000 1.88 0.00 39.36 3.18
1934 1985 5.038033 CGAAAATTCAGGGTTCGTTTTTGA 58.962 37.500 1.88 0.00 39.36 2.69
1935 1986 5.038033 TCGAAAATTCAGGGTTCGTTTTTG 58.962 37.500 8.58 0.00 43.48 2.44
1936 1987 5.038683 GTCGAAAATTCAGGGTTCGTTTTT 58.961 37.500 8.58 0.00 43.48 1.94
1937 1988 4.096682 TGTCGAAAATTCAGGGTTCGTTTT 59.903 37.500 8.58 0.00 43.48 2.43
1938 1989 3.628487 TGTCGAAAATTCAGGGTTCGTTT 59.372 39.130 8.58 0.00 43.48 3.60
1939 1990 3.002965 GTGTCGAAAATTCAGGGTTCGTT 59.997 43.478 8.58 0.00 43.48 3.85
1940 1991 2.546789 GTGTCGAAAATTCAGGGTTCGT 59.453 45.455 8.58 0.00 43.48 3.85
1941 1992 2.806244 AGTGTCGAAAATTCAGGGTTCG 59.194 45.455 3.38 3.38 44.18 3.95
1942 1993 3.564225 ACAGTGTCGAAAATTCAGGGTTC 59.436 43.478 0.00 0.00 0.00 3.62
1943 1994 3.551846 ACAGTGTCGAAAATTCAGGGTT 58.448 40.909 0.00 0.00 0.00 4.11
1944 1995 3.208747 ACAGTGTCGAAAATTCAGGGT 57.791 42.857 0.00 0.00 0.00 4.34
1945 1996 4.568152 AAACAGTGTCGAAAATTCAGGG 57.432 40.909 0.00 0.00 0.00 4.45
1946 1997 7.979115 TTTAAAACAGTGTCGAAAATTCAGG 57.021 32.000 0.00 0.00 0.00 3.86
1948 1999 9.176181 GCTATTTAAAACAGTGTCGAAAATTCA 57.824 29.630 12.26 0.00 0.00 2.57
1949 2000 8.635983 GGCTATTTAAAACAGTGTCGAAAATTC 58.364 33.333 12.26 7.31 0.00 2.17
1950 2001 7.597369 GGGCTATTTAAAACAGTGTCGAAAATT 59.403 33.333 12.26 0.00 0.00 1.82
1951 2002 7.088272 GGGCTATTTAAAACAGTGTCGAAAAT 58.912 34.615 0.00 5.67 0.00 1.82
1952 2003 6.440436 GGGCTATTTAAAACAGTGTCGAAAA 58.560 36.000 0.00 0.00 0.00 2.29
1953 2004 5.334260 CGGGCTATTTAAAACAGTGTCGAAA 60.334 40.000 0.00 0.00 0.00 3.46
1954 2005 4.152759 CGGGCTATTTAAAACAGTGTCGAA 59.847 41.667 0.00 0.00 0.00 3.71
1955 2006 3.680937 CGGGCTATTTAAAACAGTGTCGA 59.319 43.478 0.00 0.00 0.00 4.20
1956 2007 3.726782 GCGGGCTATTTAAAACAGTGTCG 60.727 47.826 0.00 0.00 0.00 4.35
1957 2008 3.439129 AGCGGGCTATTTAAAACAGTGTC 59.561 43.478 0.00 0.00 0.00 3.67
1958 2009 3.418047 AGCGGGCTATTTAAAACAGTGT 58.582 40.909 0.00 0.00 0.00 3.55
1959 2010 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
1960 2011 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
1961 2012 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
1962 2013 5.934935 GCTATAGCGGGCTATTTAAAACA 57.065 39.130 17.49 0.00 39.65 2.83
1977 2028 6.359883 GCAAGCCTTTTTATAAACGCTATAGC 59.640 38.462 15.09 15.09 35.47 2.97
1978 2029 6.573725 CGCAAGCCTTTTTATAAACGCTATAG 59.426 38.462 11.89 0.00 35.47 1.31
1979 2030 6.423862 CGCAAGCCTTTTTATAAACGCTATA 58.576 36.000 11.89 0.00 35.47 1.31
1980 2031 5.270853 CGCAAGCCTTTTTATAAACGCTAT 58.729 37.500 11.89 3.61 35.47 2.97
1981 2032 4.654015 CGCAAGCCTTTTTATAAACGCTA 58.346 39.130 11.89 0.00 35.47 4.26
1982 2033 3.498082 CGCAAGCCTTTTTATAAACGCT 58.502 40.909 0.00 2.89 37.26 5.07
1983 2034 3.881630 CGCAAGCCTTTTTATAAACGC 57.118 42.857 0.00 0.54 0.00 4.84
1998 2049 3.308323 GGATCAAAGTCTCTTAGCGCAAG 59.692 47.826 11.47 11.67 35.38 4.01
1999 2050 3.262420 GGATCAAAGTCTCTTAGCGCAA 58.738 45.455 11.47 0.50 0.00 4.85
2000 2051 2.233676 TGGATCAAAGTCTCTTAGCGCA 59.766 45.455 11.47 0.00 0.00 6.09
2001 2052 2.893637 TGGATCAAAGTCTCTTAGCGC 58.106 47.619 0.00 0.00 0.00 5.92
2002 2053 4.690748 TGTTTGGATCAAAGTCTCTTAGCG 59.309 41.667 0.00 0.00 33.82 4.26
2003 2054 6.560253 TTGTTTGGATCAAAGTCTCTTAGC 57.440 37.500 0.00 0.00 33.82 3.09
2004 2055 8.786898 TCATTTGTTTGGATCAAAGTCTCTTAG 58.213 33.333 0.00 0.00 38.02 2.18
2005 2056 8.690203 TCATTTGTTTGGATCAAAGTCTCTTA 57.310 30.769 0.00 0.00 38.02 2.10
2006 2057 7.587037 TCATTTGTTTGGATCAAAGTCTCTT 57.413 32.000 0.00 0.00 38.02 2.85
2007 2058 7.068593 TGTTCATTTGTTTGGATCAAAGTCTCT 59.931 33.333 0.00 0.00 38.02 3.10
2008 2059 7.202526 TGTTCATTTGTTTGGATCAAAGTCTC 58.797 34.615 0.00 0.00 38.02 3.36
2009 2060 7.111247 TGTTCATTTGTTTGGATCAAAGTCT 57.889 32.000 0.00 0.00 38.02 3.24
2010 2061 7.769272 TTGTTCATTTGTTTGGATCAAAGTC 57.231 32.000 0.00 0.00 38.02 3.01
2011 2062 7.605691 TGTTTGTTCATTTGTTTGGATCAAAGT 59.394 29.630 0.00 0.00 38.02 2.66
2012 2063 7.972527 TGTTTGTTCATTTGTTTGGATCAAAG 58.027 30.769 0.00 0.00 38.02 2.77
2013 2064 7.912056 TGTTTGTTCATTTGTTTGGATCAAA 57.088 28.000 0.00 0.00 38.77 2.69
2014 2065 8.503458 AATGTTTGTTCATTTGTTTGGATCAA 57.497 26.923 0.00 0.00 34.86 2.57
2015 2066 8.503458 AAATGTTTGTTCATTTGTTTGGATCA 57.497 26.923 0.00 0.00 43.50 2.92
2016 2067 8.610896 TGAAATGTTTGTTCATTTGTTTGGATC 58.389 29.630 8.96 0.00 44.62 3.36
2017 2068 8.503458 TGAAATGTTTGTTCATTTGTTTGGAT 57.497 26.923 8.96 0.00 44.62 3.41
2018 2069 7.912056 TGAAATGTTTGTTCATTTGTTTGGA 57.088 28.000 8.96 0.00 44.62 3.53
2019 2070 8.961294 TTTGAAATGTTTGTTCATTTGTTTGG 57.039 26.923 8.96 0.00 44.62 3.28
2022 2073 9.934190 GCTATTTGAAATGTTTGTTCATTTGTT 57.066 25.926 8.96 0.00 44.62 2.83
2023 2074 8.274939 CGCTATTTGAAATGTTTGTTCATTTGT 58.725 29.630 8.96 0.00 44.62 2.83
2024 2075 7.266756 GCGCTATTTGAAATGTTTGTTCATTTG 59.733 33.333 0.00 0.00 44.62 2.32
2025 2076 7.290118 GCGCTATTTGAAATGTTTGTTCATTT 58.710 30.769 0.00 4.66 46.41 2.32
2026 2077 6.399880 CGCGCTATTTGAAATGTTTGTTCATT 60.400 34.615 5.56 0.00 39.35 2.57
2027 2078 5.060816 CGCGCTATTTGAAATGTTTGTTCAT 59.939 36.000 5.56 0.00 35.03 2.57
2028 2079 4.381270 CGCGCTATTTGAAATGTTTGTTCA 59.619 37.500 5.56 0.00 33.21 3.18
2029 2080 4.718168 GCGCGCTATTTGAAATGTTTGTTC 60.718 41.667 26.67 0.00 0.00 3.18
2030 2081 3.121113 GCGCGCTATTTGAAATGTTTGTT 59.879 39.130 26.67 0.00 0.00 2.83
2031 2082 2.661195 GCGCGCTATTTGAAATGTTTGT 59.339 40.909 26.67 0.00 0.00 2.83
2032 2083 2.916716 AGCGCGCTATTTGAAATGTTTG 59.083 40.909 35.79 0.00 0.00 2.93
2033 2084 3.216147 AGCGCGCTATTTGAAATGTTT 57.784 38.095 35.79 1.95 0.00 2.83
2034 2085 2.919666 AGCGCGCTATTTGAAATGTT 57.080 40.000 35.79 2.52 0.00 2.71
2035 2086 4.377431 GCTATAGCGCGCTATTTGAAATGT 60.377 41.667 46.76 28.88 39.65 2.71
2036 2087 4.084507 GCTATAGCGCGCTATTTGAAATG 58.915 43.478 46.76 29.61 39.65 2.32
2037 2088 4.327854 GCTATAGCGCGCTATTTGAAAT 57.672 40.909 46.76 31.12 39.65 2.17
2038 2089 3.788434 GCTATAGCGCGCTATTTGAAA 57.212 42.857 46.76 31.88 39.65 2.69
2057 2108 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
2058 2109 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
2064 2115 5.400066 TCCAAATGCTATAGCGTGCTATA 57.600 39.130 20.02 17.96 45.83 1.31
2065 2116 4.271696 TCCAAATGCTATAGCGTGCTAT 57.728 40.909 20.02 17.65 45.83 2.97
2066 2117 3.744238 TCCAAATGCTATAGCGTGCTA 57.256 42.857 20.02 3.73 45.83 3.49
2067 2118 2.620251 TCCAAATGCTATAGCGTGCT 57.380 45.000 20.02 7.98 45.83 4.40
2068 2119 2.872245 TCTTCCAAATGCTATAGCGTGC 59.128 45.455 20.02 0.00 45.83 5.34
2069 2120 3.496130 CCTCTTCCAAATGCTATAGCGTG 59.504 47.826 20.02 16.14 45.83 5.34
2070 2121 3.134804 ACCTCTTCCAAATGCTATAGCGT 59.865 43.478 19.55 16.84 45.83 5.07
2071 2122 3.733337 ACCTCTTCCAAATGCTATAGCG 58.267 45.455 19.55 5.29 45.83 4.26
2072 2123 4.068599 GGACCTCTTCCAAATGCTATAGC 58.931 47.826 18.18 18.18 45.10 2.97
2073 2124 4.310769 CGGACCTCTTCCAAATGCTATAG 58.689 47.826 0.00 0.00 46.29 1.31
2074 2125 3.494398 GCGGACCTCTTCCAAATGCTATA 60.494 47.826 0.00 0.00 46.29 1.31
2075 2126 2.746472 GCGGACCTCTTCCAAATGCTAT 60.746 50.000 0.00 0.00 46.29 2.97
2076 2127 1.406887 GCGGACCTCTTCCAAATGCTA 60.407 52.381 0.00 0.00 46.29 3.49
2077 2128 0.678048 GCGGACCTCTTCCAAATGCT 60.678 55.000 0.00 0.00 46.29 3.79
2078 2129 1.657751 GGCGGACCTCTTCCAAATGC 61.658 60.000 0.00 0.00 46.29 3.56
2079 2130 1.369091 CGGCGGACCTCTTCCAAATG 61.369 60.000 0.00 0.00 46.29 2.32
2080 2131 1.078426 CGGCGGACCTCTTCCAAAT 60.078 57.895 0.00 0.00 46.29 2.32
2081 2132 2.345991 CGGCGGACCTCTTCCAAA 59.654 61.111 0.00 0.00 46.29 3.28
2082 2133 4.388499 GCGGCGGACCTCTTCCAA 62.388 66.667 9.78 0.00 46.29 3.53
2083 2134 3.949885 TAGCGGCGGACCTCTTCCA 62.950 63.158 9.78 0.00 46.29 3.53
2084 2135 2.630592 CTTAGCGGCGGACCTCTTCC 62.631 65.000 9.78 0.00 41.75 3.46
2085 2136 1.227002 CTTAGCGGCGGACCTCTTC 60.227 63.158 9.78 0.00 31.87 2.87
2086 2137 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
2087 2138 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
2088 2139 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
2089 2140 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
2090 2141 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
2091 2142 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
2092 2143 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
2093 2144 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
2094 2145 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
2110 2161 9.503427 GAAAATCATAGTTTTAAATAGTGCGCT 57.497 29.630 9.73 4.58 31.80 5.92
2111 2162 8.461398 CGAAAATCATAGTTTTAAATAGTGCGC 58.539 33.333 0.00 0.00 31.80 6.09
2112 2163 9.697250 TCGAAAATCATAGTTTTAAATAGTGCG 57.303 29.630 0.00 0.00 31.80 5.34
2122 2173 8.960591 ACTTCATGGATCGAAAATCATAGTTTT 58.039 29.630 0.00 0.00 34.19 2.43
2123 2174 8.511604 ACTTCATGGATCGAAAATCATAGTTT 57.488 30.769 0.00 0.00 0.00 2.66
2124 2175 8.400947 CAACTTCATGGATCGAAAATCATAGTT 58.599 33.333 0.00 0.00 0.00 2.24
2125 2176 7.770433 TCAACTTCATGGATCGAAAATCATAGT 59.230 33.333 0.00 0.00 0.00 2.12
2126 2177 8.066595 GTCAACTTCATGGATCGAAAATCATAG 58.933 37.037 0.00 0.00 0.00 2.23
2127 2178 7.552330 TGTCAACTTCATGGATCGAAAATCATA 59.448 33.333 0.00 0.00 0.00 2.15
2128 2179 6.375174 TGTCAACTTCATGGATCGAAAATCAT 59.625 34.615 0.00 0.00 0.00 2.45
2129 2180 5.704978 TGTCAACTTCATGGATCGAAAATCA 59.295 36.000 0.00 0.00 0.00 2.57
2130 2181 6.024049 GTGTCAACTTCATGGATCGAAAATC 58.976 40.000 0.00 0.00 0.00 2.17
2131 2182 5.106157 GGTGTCAACTTCATGGATCGAAAAT 60.106 40.000 0.00 0.00 0.00 1.82
2132 2183 4.215399 GGTGTCAACTTCATGGATCGAAAA 59.785 41.667 0.00 0.00 0.00 2.29
2133 2184 3.751175 GGTGTCAACTTCATGGATCGAAA 59.249 43.478 0.00 0.00 0.00 3.46
2134 2185 3.334691 GGTGTCAACTTCATGGATCGAA 58.665 45.455 0.00 0.00 0.00 3.71
2135 2186 2.354704 GGGTGTCAACTTCATGGATCGA 60.355 50.000 0.00 0.00 0.00 3.59
2136 2187 2.009774 GGGTGTCAACTTCATGGATCG 58.990 52.381 0.00 0.00 0.00 3.69
2137 2188 2.369394 GGGGTGTCAACTTCATGGATC 58.631 52.381 0.00 0.00 0.00 3.36
2138 2189 1.340017 CGGGGTGTCAACTTCATGGAT 60.340 52.381 0.00 0.00 0.00 3.41
2139 2190 0.036164 CGGGGTGTCAACTTCATGGA 59.964 55.000 0.00 0.00 0.00 3.41
2140 2191 0.250727 ACGGGGTGTCAACTTCATGG 60.251 55.000 0.00 0.00 0.00 3.66
2141 2192 2.073816 GTACGGGGTGTCAACTTCATG 58.926 52.381 0.00 0.00 0.00 3.07
2142 2193 1.975680 AGTACGGGGTGTCAACTTCAT 59.024 47.619 0.00 0.00 0.00 2.57
2143 2194 1.342174 GAGTACGGGGTGTCAACTTCA 59.658 52.381 0.00 0.00 0.00 3.02
2144 2195 1.342174 TGAGTACGGGGTGTCAACTTC 59.658 52.381 0.00 0.00 0.00 3.01
2145 2196 1.069668 GTGAGTACGGGGTGTCAACTT 59.930 52.381 0.00 0.00 0.00 2.66
2146 2197 0.677842 GTGAGTACGGGGTGTCAACT 59.322 55.000 0.00 0.00 0.00 3.16
2147 2198 0.677842 AGTGAGTACGGGGTGTCAAC 59.322 55.000 0.00 0.00 0.00 3.18
2148 2199 2.291209 TAGTGAGTACGGGGTGTCAA 57.709 50.000 0.00 0.00 0.00 3.18
2149 2200 2.291209 TTAGTGAGTACGGGGTGTCA 57.709 50.000 0.00 0.00 0.00 3.58
2150 2201 2.100418 GGATTAGTGAGTACGGGGTGTC 59.900 54.545 0.00 0.00 0.00 3.67
2151 2202 2.105766 GGATTAGTGAGTACGGGGTGT 58.894 52.381 0.00 0.00 0.00 4.16
2152 2203 2.100916 CAGGATTAGTGAGTACGGGGTG 59.899 54.545 0.00 0.00 0.00 4.61
2153 2204 2.385803 CAGGATTAGTGAGTACGGGGT 58.614 52.381 0.00 0.00 0.00 4.95
2154 2205 1.068741 GCAGGATTAGTGAGTACGGGG 59.931 57.143 0.00 0.00 0.00 5.73
2155 2206 1.068741 GGCAGGATTAGTGAGTACGGG 59.931 57.143 0.00 0.00 0.00 5.28
2156 2207 2.032620 AGGCAGGATTAGTGAGTACGG 58.967 52.381 0.00 0.00 0.00 4.02
2157 2208 4.913335 TTAGGCAGGATTAGTGAGTACG 57.087 45.455 0.00 0.00 0.00 3.67
2158 2209 6.163135 ACATTAGGCAGGATTAGTGAGTAC 57.837 41.667 0.00 0.00 0.00 2.73
2159 2210 5.897250 TGACATTAGGCAGGATTAGTGAGTA 59.103 40.000 0.00 0.00 0.00 2.59
2160 2211 4.716784 TGACATTAGGCAGGATTAGTGAGT 59.283 41.667 0.00 0.00 0.00 3.41
2161 2212 5.282055 TGACATTAGGCAGGATTAGTGAG 57.718 43.478 0.00 0.00 0.00 3.51
2162 2213 5.428253 GTTGACATTAGGCAGGATTAGTGA 58.572 41.667 0.00 0.00 0.00 3.41
2163 2214 4.576463 GGTTGACATTAGGCAGGATTAGTG 59.424 45.833 0.00 0.00 0.00 2.74
2164 2215 4.385310 GGGTTGACATTAGGCAGGATTAGT 60.385 45.833 0.00 0.00 0.00 2.24
2165 2216 4.137543 GGGTTGACATTAGGCAGGATTAG 58.862 47.826 0.00 0.00 0.00 1.73
2166 2217 3.785887 AGGGTTGACATTAGGCAGGATTA 59.214 43.478 0.00 0.00 0.00 1.75
2167 2218 2.582636 AGGGTTGACATTAGGCAGGATT 59.417 45.455 0.00 0.00 0.00 3.01
2168 2219 2.208872 AGGGTTGACATTAGGCAGGAT 58.791 47.619 0.00 0.00 0.00 3.24
2169 2220 1.668826 AGGGTTGACATTAGGCAGGA 58.331 50.000 0.00 0.00 0.00 3.86
2170 2221 3.864789 ATAGGGTTGACATTAGGCAGG 57.135 47.619 0.00 0.00 0.00 4.85
2171 2222 4.642429 GGTATAGGGTTGACATTAGGCAG 58.358 47.826 0.00 0.00 0.00 4.85
2172 2223 3.070446 CGGTATAGGGTTGACATTAGGCA 59.930 47.826 0.00 0.00 0.00 4.75
2173 2224 3.322828 TCGGTATAGGGTTGACATTAGGC 59.677 47.826 0.00 0.00 0.00 3.93
2174 2225 4.262335 GGTCGGTATAGGGTTGACATTAGG 60.262 50.000 0.00 0.00 0.00 2.69
2175 2226 4.262335 GGGTCGGTATAGGGTTGACATTAG 60.262 50.000 0.00 0.00 0.00 1.73
2176 2227 3.642848 GGGTCGGTATAGGGTTGACATTA 59.357 47.826 0.00 0.00 0.00 1.90
2177 2228 2.436911 GGGTCGGTATAGGGTTGACATT 59.563 50.000 0.00 0.00 0.00 2.71
2178 2229 2.044758 GGGTCGGTATAGGGTTGACAT 58.955 52.381 0.00 0.00 0.00 3.06
2179 2230 1.007479 AGGGTCGGTATAGGGTTGACA 59.993 52.381 0.00 0.00 0.00 3.58
2180 2231 1.411612 CAGGGTCGGTATAGGGTTGAC 59.588 57.143 0.00 0.00 0.00 3.18
2181 2232 1.690209 CCAGGGTCGGTATAGGGTTGA 60.690 57.143 0.00 0.00 0.00 3.18
2182 2233 0.756903 CCAGGGTCGGTATAGGGTTG 59.243 60.000 0.00 0.00 0.00 3.77
2183 2234 0.638292 TCCAGGGTCGGTATAGGGTT 59.362 55.000 0.00 0.00 0.00 4.11
2184 2235 0.865362 ATCCAGGGTCGGTATAGGGT 59.135 55.000 0.00 0.00 0.00 4.34
2185 2236 1.267121 CATCCAGGGTCGGTATAGGG 58.733 60.000 0.00 0.00 0.00 3.53
2186 2237 2.011122 ACATCCAGGGTCGGTATAGG 57.989 55.000 0.00 0.00 0.00 2.57
2187 2238 5.011738 ACAAATACATCCAGGGTCGGTATAG 59.988 44.000 0.00 0.00 0.00 1.31
2188 2239 4.903049 ACAAATACATCCAGGGTCGGTATA 59.097 41.667 0.00 0.00 0.00 1.47
2189 2240 3.714798 ACAAATACATCCAGGGTCGGTAT 59.285 43.478 0.00 0.00 0.00 2.73
2190 2241 3.109151 ACAAATACATCCAGGGTCGGTA 58.891 45.455 0.00 0.00 0.00 4.02
2191 2242 1.913419 ACAAATACATCCAGGGTCGGT 59.087 47.619 0.00 0.00 0.00 4.69
2192 2243 2.710096 ACAAATACATCCAGGGTCGG 57.290 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.