Multiple sequence alignment - TraesCS1B01G142900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G142900 chr1B 100.000 5850 0 0 1 5850 192694287 192688438 0.000000e+00 10804
1 TraesCS1B01G142900 chr1B 95.052 1334 56 10 3812 5144 117569460 117570784 0.000000e+00 2089
2 TraesCS1B01G142900 chr1B 94.839 1337 58 9 3812 5144 538917256 538918585 0.000000e+00 2076
3 TraesCS1B01G142900 chr1B 88.608 158 17 1 1 157 200645962 200645805 2.150000e-44 191
4 TraesCS1B01G142900 chr1B 88.608 158 17 1 1 157 420225251 420225408 2.150000e-44 191
5 TraesCS1B01G142900 chr2B 95.642 5737 192 21 156 5850 220357570 220363290 0.000000e+00 9156
6 TraesCS1B01G142900 chr2B 93.682 3767 171 30 226 3970 421425792 421422071 0.000000e+00 5576
7 TraesCS1B01G142900 chr2B 93.184 1159 51 11 4714 5848 421412783 421411629 0.000000e+00 1677
8 TraesCS1B01G142900 chr2B 94.904 157 8 0 1 157 220357366 220357522 4.530000e-61 246
9 TraesCS1B01G142900 chr3D 95.833 5568 158 32 156 5678 256149353 256143815 0.000000e+00 8929
10 TraesCS1B01G142900 chr3D 95.450 1121 38 6 1526 2641 250337607 250338719 0.000000e+00 1775
11 TraesCS1B01G142900 chr7A 94.844 5741 179 42 156 5850 308451166 308456835 0.000000e+00 8853
12 TraesCS1B01G142900 chr7A 91.404 698 46 9 5165 5850 629775758 629775063 0.000000e+00 944
13 TraesCS1B01G142900 chr7A 96.178 157 6 0 1 157 308450962 308451118 2.090000e-64 257
14 TraesCS1B01G142900 chr6A 96.011 4562 132 21 443 4973 388055615 388060157 0.000000e+00 7371
15 TraesCS1B01G142900 chr6A 97.924 289 6 0 156 444 388055165 388055453 8.750000e-138 501
16 TraesCS1B01G142900 chr6A 94.904 157 8 0 1 157 388054961 388055117 4.530000e-61 246
17 TraesCS1B01G142900 chr4B 94.066 2848 103 28 3052 5850 414454041 414451211 0.000000e+00 4263
18 TraesCS1B01G142900 chr4B 96.176 2615 84 13 338 2945 414457295 414454690 0.000000e+00 4261
19 TraesCS1B01G142900 chr4B 88.201 1034 102 13 416 1444 484013285 484012267 0.000000e+00 1216
20 TraesCS1B01G142900 chr4B 95.455 660 20 8 3012 3670 414454687 414454037 0.000000e+00 1044
21 TraesCS1B01G142900 chr4B 87.975 158 18 1 1 157 479489016 479488859 1.000000e-42 185
22 TraesCS1B01G142900 chr6B 94.359 2535 108 16 3343 5850 393760582 393763108 0.000000e+00 3856
23 TraesCS1B01G142900 chr6B 95.470 1788 73 5 1163 2945 393757675 393759459 0.000000e+00 2846
24 TraesCS1B01G142900 chr6B 94.069 607 30 3 5247 5850 373759837 373759234 0.000000e+00 917
25 TraesCS1B01G142900 chr6B 94.737 380 12 5 3009 3385 393760211 393760585 8.450000e-163 584
26 TraesCS1B01G142900 chr5B 95.230 2411 83 14 156 2536 139739425 139741833 0.000000e+00 3786
27 TraesCS1B01G142900 chr5B 94.904 157 8 0 1 157 139739221 139739377 4.530000e-61 246
28 TraesCS1B01G142900 chr5D 95.565 1804 49 8 1564 3351 249158411 249156623 0.000000e+00 2859
29 TraesCS1B01G142900 chr5D 95.145 1792 56 13 4085 5850 249151353 249149567 0.000000e+00 2798
30 TraesCS1B01G142900 chr5D 97.336 1314 29 3 156 1468 249160032 249158724 0.000000e+00 2228
31 TraesCS1B01G142900 chr5D 94.904 157 8 0 1 157 249160236 249160080 4.530000e-61 246
32 TraesCS1B01G142900 chr3B 94.661 1742 67 13 2800 4524 277656413 277658145 0.000000e+00 2678
33 TraesCS1B01G142900 chr3B 94.113 1359 57 10 4515 5850 277659002 277660360 0.000000e+00 2045
34 TraesCS1B01G142900 chr3B 89.350 1446 119 16 1879 3299 330779215 330777780 0.000000e+00 1784
35 TraesCS1B01G142900 chr3B 94.904 157 8 0 1 157 277645063 277645219 4.530000e-61 246
36 TraesCS1B01G142900 chr6D 91.820 868 42 9 5007 5850 16120361 16121223 0.000000e+00 1182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G142900 chr1B 192688438 192694287 5849 True 10804.000000 10804 100.000000 1 5850 1 chr1B.!!$R1 5849
1 TraesCS1B01G142900 chr1B 117569460 117570784 1324 False 2089.000000 2089 95.052000 3812 5144 1 chr1B.!!$F1 1332
2 TraesCS1B01G142900 chr1B 538917256 538918585 1329 False 2076.000000 2076 94.839000 3812 5144 1 chr1B.!!$F3 1332
3 TraesCS1B01G142900 chr2B 421422071 421425792 3721 True 5576.000000 5576 93.682000 226 3970 1 chr2B.!!$R2 3744
4 TraesCS1B01G142900 chr2B 220357366 220363290 5924 False 4701.000000 9156 95.273000 1 5850 2 chr2B.!!$F1 5849
5 TraesCS1B01G142900 chr2B 421411629 421412783 1154 True 1677.000000 1677 93.184000 4714 5848 1 chr2B.!!$R1 1134
6 TraesCS1B01G142900 chr3D 256143815 256149353 5538 True 8929.000000 8929 95.833000 156 5678 1 chr3D.!!$R1 5522
7 TraesCS1B01G142900 chr3D 250337607 250338719 1112 False 1775.000000 1775 95.450000 1526 2641 1 chr3D.!!$F1 1115
8 TraesCS1B01G142900 chr7A 308450962 308456835 5873 False 4555.000000 8853 95.511000 1 5850 2 chr7A.!!$F1 5849
9 TraesCS1B01G142900 chr7A 629775063 629775758 695 True 944.000000 944 91.404000 5165 5850 1 chr7A.!!$R1 685
10 TraesCS1B01G142900 chr6A 388054961 388060157 5196 False 2706.000000 7371 96.279667 1 4973 3 chr6A.!!$F1 4972
11 TraesCS1B01G142900 chr4B 414451211 414457295 6084 True 3189.333333 4263 95.232333 338 5850 3 chr4B.!!$R3 5512
12 TraesCS1B01G142900 chr4B 484012267 484013285 1018 True 1216.000000 1216 88.201000 416 1444 1 chr4B.!!$R2 1028
13 TraesCS1B01G142900 chr6B 393757675 393763108 5433 False 2428.666667 3856 94.855333 1163 5850 3 chr6B.!!$F1 4687
14 TraesCS1B01G142900 chr6B 373759234 373759837 603 True 917.000000 917 94.069000 5247 5850 1 chr6B.!!$R1 603
15 TraesCS1B01G142900 chr5B 139739221 139741833 2612 False 2016.000000 3786 95.067000 1 2536 2 chr5B.!!$F1 2535
16 TraesCS1B01G142900 chr5D 249149567 249151353 1786 True 2798.000000 2798 95.145000 4085 5850 1 chr5D.!!$R1 1765
17 TraesCS1B01G142900 chr5D 249156623 249160236 3613 True 1777.666667 2859 95.935000 1 3351 3 chr5D.!!$R2 3350
18 TraesCS1B01G142900 chr3B 277656413 277660360 3947 False 2361.500000 2678 94.387000 2800 5850 2 chr3B.!!$F2 3050
19 TraesCS1B01G142900 chr3B 330777780 330779215 1435 True 1784.000000 1784 89.350000 1879 3299 1 chr3B.!!$R1 1420
20 TraesCS1B01G142900 chr6D 16120361 16121223 862 False 1182.000000 1182 91.820000 5007 5850 1 chr6D.!!$F1 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 378 1.280421 ACCTTCAGATCCACTCTTGCC 59.720 52.381 0.00 0.00 29.16 4.52 F
1301 1521 2.677542 TGTCCCTATAGCAGTCGGAT 57.322 50.000 0.00 0.00 0.00 4.18 F
2491 3012 0.471617 ATAGAGTGTGAGCATGCCCC 59.528 55.000 15.66 7.45 0.00 5.80 F
3673 5650 1.937899 GGCCAGTTTATATGCGTCGTT 59.062 47.619 0.00 0.00 0.00 3.85 F
4108 6089 0.389948 CGGTGGGAGTGTTAGAGTGC 60.390 60.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2705 2.037121 TGAGATGTGTCGGTGTGTTCAT 59.963 45.455 0.0 0.0 0.00 2.57 R
2518 3040 0.618458 ACATACCCAGCGTCCATGTT 59.382 50.000 0.0 0.0 0.00 2.71 R
3963 5943 2.009042 GCTGACGCTTAGAGCAATGGT 61.009 52.381 0.5 0.0 42.58 3.55 R
4685 7536 1.507141 GCTTGGGGCACGGAATATCG 61.507 60.000 0.0 0.0 41.35 2.92 R
5706 8612 2.253603 GGATGTCAAAATGCTTGCGAC 58.746 47.619 0.0 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.773645 GGACCAAAAACAGGAAGATAAATTTTG 58.226 33.333 0.00 0.00 36.53 2.44
328 378 1.280421 ACCTTCAGATCCACTCTTGCC 59.720 52.381 0.00 0.00 29.16 4.52
478 691 4.616802 CACGTTTGAGTGCATTTTCATACC 59.383 41.667 0.00 0.00 35.17 2.73
480 693 5.088739 CGTTTGAGTGCATTTTCATACCTC 58.911 41.667 0.00 0.00 0.00 3.85
866 1084 3.067601 AGTGAAAACGAATTTGGGACCAC 59.932 43.478 0.00 0.87 0.00 4.16
909 1127 8.800370 TGAATATAAATTGTGACCTTGTGCTA 57.200 30.769 0.00 0.00 0.00 3.49
1290 1510 3.959495 ATTGTGGCTTGATGTCCCTAT 57.041 42.857 0.00 0.00 0.00 2.57
1301 1521 2.677542 TGTCCCTATAGCAGTCGGAT 57.322 50.000 0.00 0.00 0.00 4.18
1302 1522 3.801307 TGTCCCTATAGCAGTCGGATA 57.199 47.619 0.00 0.00 0.00 2.59
1352 1573 3.324846 TCTGAACTCTTGCACCACAGTAT 59.675 43.478 0.00 0.00 0.00 2.12
1411 1633 2.716424 TGAGGAGGATTGTTGTTTCCCT 59.284 45.455 0.00 0.00 32.05 4.20
1500 1983 8.478877 AGTGCACTTTTAGATAGTACATTAGCT 58.521 33.333 15.25 0.00 0.00 3.32
1522 2005 5.932303 GCTCCGATGGTGCTATCTTTAATAA 59.068 40.000 2.79 0.00 38.91 1.40
1804 2312 5.666969 TCAGTGTAGGTTCAAACAATTCG 57.333 39.130 0.00 0.00 0.00 3.34
1822 2330 3.557577 TCGTTCATTCATTGCAGGTTG 57.442 42.857 0.00 0.00 0.00 3.77
1866 2374 4.422073 TGCTTCATATTCAGGGTCGAAT 57.578 40.909 0.00 0.00 39.03 3.34
1931 2439 4.009675 GTGAGGTGCATTTTAGACATCCA 58.990 43.478 0.00 0.00 0.00 3.41
2004 2512 4.095410 CAGATTTTGCTTGGCGTATTCA 57.905 40.909 0.00 0.00 0.00 2.57
2121 2631 6.294899 CCCTTCACTGTCATTTCATTTGTGAT 60.295 38.462 0.00 0.00 33.80 3.06
2187 2705 6.389830 TCTTTTTCTGCTGACAATTGCTTA 57.610 33.333 5.05 0.00 0.00 3.09
2201 2719 2.535012 TGCTTATGAACACACCGACA 57.465 45.000 0.00 0.00 0.00 4.35
2430 2949 6.289064 TGACTGAATCGCATAGAGTAGACTA 58.711 40.000 0.00 0.00 0.00 2.59
2491 3012 0.471617 ATAGAGTGTGAGCATGCCCC 59.528 55.000 15.66 7.45 0.00 5.80
2517 3039 5.501156 GGACCTGTCTGAATAAATCCTGTT 58.499 41.667 0.00 0.00 0.00 3.16
2518 3040 6.352737 GGGACCTGTCTGAATAAATCCTGTTA 60.353 42.308 0.00 0.00 0.00 2.41
2691 3215 8.993121 GCTATGTTCATGTATGTATAGCTTTGT 58.007 33.333 19.12 0.00 38.55 2.83
3150 4442 6.920569 TTTTGACTACACCTCTTTGTTCTC 57.079 37.500 0.00 0.00 0.00 2.87
3586 4931 6.183361 ACAGTGTAAAAATGGTAGGTGGTAGT 60.183 38.462 0.00 0.00 0.00 2.73
3673 5650 1.937899 GGCCAGTTTATATGCGTCGTT 59.062 47.619 0.00 0.00 0.00 3.85
3690 5668 6.793203 TGCGTCGTTGAAAATATGAGTAAAAC 59.207 34.615 0.00 0.00 0.00 2.43
3721 5700 3.827008 TTTGCATTGCCTTGGTGTTTA 57.173 38.095 6.12 0.00 0.00 2.01
3775 5754 3.749226 CTTCTCTTTCCAAGCAAGGACT 58.251 45.455 0.00 0.00 37.42 3.85
3791 5770 3.243724 AGGACTAGGCTGGGAACATATC 58.756 50.000 2.02 0.00 41.51 1.63
3946 5925 5.710099 CCTCCAAAACCTGCAGTTCTATTTA 59.290 40.000 13.81 0.00 37.88 1.40
4095 6076 1.303236 TGAATTGTGCTCCGGTGGG 60.303 57.895 0.00 0.00 0.00 4.61
4108 6089 0.389948 CGGTGGGAGTGTTAGAGTGC 60.390 60.000 0.00 0.00 0.00 4.40
4262 6243 6.165742 TGGTCTCCATCCTATATATGGTCA 57.834 41.667 11.93 6.35 43.72 4.02
4338 6321 6.610075 ACCAATAGAAAGTTACTCCCGTTA 57.390 37.500 0.00 0.00 0.00 3.18
4340 6323 6.212187 ACCAATAGAAAGTTACTCCCGTTAGT 59.788 38.462 0.00 0.00 0.00 2.24
4341 6324 7.397192 ACCAATAGAAAGTTACTCCCGTTAGTA 59.603 37.037 0.00 0.00 0.00 1.82
4428 6413 0.739462 TCATGGTGCGCCTACTTTCG 60.739 55.000 18.96 0.00 35.27 3.46
4799 7653 3.550437 AGCGGCTTACTCAGATCAATT 57.450 42.857 0.00 0.00 0.00 2.32
4933 7794 7.361542 CCTGTTGTATCCTCAGACATTTTCTTG 60.362 40.741 0.00 0.00 28.96 3.02
5199 8080 5.808366 TGCAGAGAAATCCGAGGTAATAT 57.192 39.130 0.00 0.00 0.00 1.28
5239 8122 3.060003 CAGTTTCAGTCGCAGAGTTTCAG 60.060 47.826 0.00 0.00 38.70 3.02
5299 8190 7.255104 CCATATGCGCCAGAAGTTATTCTTTTA 60.255 37.037 4.18 0.00 43.45 1.52
5300 8191 5.291293 TGCGCCAGAAGTTATTCTTTTAC 57.709 39.130 4.18 0.00 43.45 2.01
5312 8203 7.596248 AAGTTATTCTTTTACTGCACATGCAAG 59.404 33.333 8.11 2.21 41.22 4.01
5348 8240 4.793201 AGAAACACTGCTAAAAGACCCTT 58.207 39.130 0.00 0.00 0.00 3.95
5600 8503 2.031682 GTGTGCTTGACCACAGCTAAAG 60.032 50.000 0.00 0.00 45.54 1.85
5700 8604 8.434733 CTACTAAAGGAAACTAACTAATGCCC 57.565 38.462 0.00 0.00 42.68 5.36
5706 8612 6.993079 AGGAAACTAACTAATGCCCTTTTTG 58.007 36.000 0.00 0.00 40.61 2.44
5756 8664 0.984109 CACAATTTTGCATCGCCGAC 59.016 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.331931 AGGTGGTCATACTTCTGGAAAATATA 57.668 34.615 0.00 0.00 0.00 0.86
88 89 1.608055 CATTGTGCAGAAGGTGGTCA 58.392 50.000 1.68 0.00 0.00 4.02
252 302 3.243877 CGATTCAAGCGTCGAATTCATCT 59.756 43.478 6.22 0.00 40.11 2.90
328 378 1.289160 TGGGGACAGAAGGAGAATGG 58.711 55.000 0.00 0.00 35.01 3.16
811 1027 8.897752 GCCAACAAAAATATAGATCTTCTCTGT 58.102 33.333 0.00 0.00 35.28 3.41
909 1127 2.611800 TGCAGCTCCACCCCAGAT 60.612 61.111 0.00 0.00 0.00 2.90
930 1149 2.622064 ATTGTTATCCGCCTCTCACC 57.378 50.000 0.00 0.00 0.00 4.02
986 1206 2.270205 CCATTGCGGAGGAGTGCT 59.730 61.111 0.00 0.00 33.60 4.40
1500 1983 7.062749 AGTTATTAAAGATAGCACCATCGGA 57.937 36.000 0.00 0.00 0.00 4.55
1569 2053 9.119418 CATTACATGTGTAAAGTCATAATCCCA 57.881 33.333 9.11 0.00 42.93 4.37
1804 2312 3.248266 GCTCAACCTGCAATGAATGAAC 58.752 45.455 0.00 0.00 0.00 3.18
1822 2330 7.172875 AGCAATAAGACATAATGAGACATGCTC 59.827 37.037 9.41 9.41 44.21 4.26
1843 2351 4.422073 TCGACCCTGAATATGAAGCAAT 57.578 40.909 0.00 0.00 0.00 3.56
1866 2374 6.728200 CCTCAATGAAAGAAATATAGCGCAA 58.272 36.000 11.47 0.00 0.00 4.85
1931 2439 4.511527 CACCTGAACATAGCAAGACATCT 58.488 43.478 0.00 0.00 0.00 2.90
2121 2631 8.567104 CGACAACATGGATCAATGGAATAAATA 58.433 33.333 14.72 0.00 31.46 1.40
2187 2705 2.037121 TGAGATGTGTCGGTGTGTTCAT 59.963 45.455 0.00 0.00 0.00 2.57
2201 2719 4.231426 AGGGGAATTTCCTCAATGAGATGT 59.769 41.667 17.61 0.00 40.36 3.06
2430 2949 5.316158 AGCTATGCAAGAATTATCAGGGT 57.684 39.130 0.00 0.00 0.00 4.34
2491 3012 3.467803 GATTTATTCAGACAGGTCCCCG 58.532 50.000 0.00 0.00 0.00 5.73
2504 3026 6.038271 AGCGTCCATGTTAACAGGATTTATTC 59.962 38.462 21.22 9.82 33.33 1.75
2510 3032 2.632377 CAGCGTCCATGTTAACAGGAT 58.368 47.619 21.22 7.20 33.33 3.24
2517 3039 1.834896 ACATACCCAGCGTCCATGTTA 59.165 47.619 0.00 0.00 0.00 2.41
2518 3040 0.618458 ACATACCCAGCGTCCATGTT 59.382 50.000 0.00 0.00 0.00 2.71
3124 4416 8.974060 AGAACAAAGAGGTGTAGTCAAAATAA 57.026 30.769 0.00 0.00 0.00 1.40
3131 4423 5.203060 ACAGAGAACAAAGAGGTGTAGTC 57.797 43.478 0.00 0.00 0.00 2.59
3132 4424 6.726490 TTACAGAGAACAAAGAGGTGTAGT 57.274 37.500 0.00 0.00 0.00 2.73
3150 4442 3.411446 TCAACCAAGAGCACCATTACAG 58.589 45.455 0.00 0.00 0.00 2.74
3219 4511 9.630098 CATTGCAAGTAAATCACAAAGAGTTAT 57.370 29.630 4.94 0.00 38.82 1.89
3471 4813 7.060289 CGACATTGATGAAAACTGAAATCACAG 59.940 37.037 0.00 0.00 42.78 3.66
3586 4931 4.141937 GGCACTCAGTCACAGGTTATGATA 60.142 45.833 0.00 0.00 0.00 2.15
3690 5668 4.761975 AGGCAATGCAAAATATTCACTGG 58.238 39.130 7.79 0.00 0.00 4.00
3721 5700 7.944729 AAAAGGATTATGCAATAGACACACT 57.055 32.000 0.00 0.00 0.00 3.55
3775 5754 9.111519 TCATTATAAAGATATGTTCCCAGCCTA 57.888 33.333 0.00 0.00 0.00 3.93
3963 5943 2.009042 GCTGACGCTTAGAGCAATGGT 61.009 52.381 0.50 0.00 42.58 3.55
4095 6076 4.756084 AAAATGCTGCACTCTAACACTC 57.244 40.909 3.57 0.00 0.00 3.51
4428 6413 9.442047 CATAAGAGTCCTGGATTTTACATATCC 57.558 37.037 0.00 0.00 41.63 2.59
4642 7493 9.113838 CAAACATCAGTATTAAGCAAGGACTAT 57.886 33.333 0.00 0.00 0.00 2.12
4685 7536 1.507141 GCTTGGGGCACGGAATATCG 61.507 60.000 0.00 0.00 41.35 2.92
4777 7628 3.334583 TTGATCTGAGTAAGCCGCTTT 57.665 42.857 11.68 0.00 0.00 3.51
4799 7653 4.706476 AGCTATTTTTCTAAGTGCATGCCA 59.294 37.500 16.68 0.00 0.00 4.92
4933 7794 5.820404 AATACTAGGGTATTGGTAGGTGC 57.180 43.478 0.00 0.00 44.21 5.01
5199 8080 3.251484 ACTGGTGAGATTTCTCCCTTCA 58.749 45.455 5.17 0.00 42.20 3.02
5239 8122 5.562298 TCTGAAAGGCCCATATTACCTAC 57.438 43.478 0.00 0.00 32.08 3.18
5396 8293 5.108254 GCACACGCTAAGAATTTCAAGTTTG 60.108 40.000 0.00 1.23 34.30 2.93
5530 8427 5.704978 AGCAGAAAAATGGTGTTTGTTGTTT 59.295 32.000 0.00 0.00 0.00 2.83
5700 8604 4.032672 TGTCAAAATGCTTGCGACAAAAAG 59.967 37.500 0.00 0.00 33.86 2.27
5706 8612 2.253603 GGATGTCAAAATGCTTGCGAC 58.746 47.619 0.00 0.00 0.00 5.19
5756 8664 8.303876 AGGTATTTTAAGCATACAAACCACAAG 58.696 33.333 8.42 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.