Multiple sequence alignment - TraesCS1B01G142400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G142400 chr1B 100.000 7718 0 0 1 7718 191954367 191962084 0.000000e+00 14253.0
1 TraesCS1B01G142400 chr1B 94.533 2067 53 19 3070 5107 84424636 84426671 0.000000e+00 3136.0
2 TraesCS1B01G142400 chr1B 84.962 133 18 2 1 133 13404661 13404531 4.860000e-27 134.0
3 TraesCS1B01G142400 chr1B 82.895 76 13 0 1 76 86748983 86749058 1.390000e-07 69.4
4 TraesCS1B01G142400 chr5A 95.460 2467 61 5 3069 5510 400784647 400782207 0.000000e+00 3888.0
5 TraesCS1B01G142400 chr5A 95.591 2064 43 4 3070 5107 30052639 30054680 0.000000e+00 3264.0
6 TraesCS1B01G142400 chr5A 97.473 277 6 1 417 692 504717585 504717309 9.070000e-129 472.0
7 TraesCS1B01G142400 chr5A 86.275 153 18 3 7325 7475 53192086 53192237 6.200000e-36 163.0
8 TraesCS1B01G142400 chr5A 83.916 143 17 4 7325 7464 53017106 53017245 1.750000e-26 132.0
9 TraesCS1B01G142400 chr5A 93.617 47 3 0 7617 7663 283578737 283578691 3.860000e-08 71.3
10 TraesCS1B01G142400 chr2B 95.425 2470 61 5 3070 5511 337960787 337958342 0.000000e+00 3888.0
11 TraesCS1B01G142400 chr2B 95.307 2472 63 8 3067 5510 41487896 41490342 0.000000e+00 3873.0
12 TraesCS1B01G142400 chr2B 95.140 2469 67 6 3068 5510 753595205 753592764 0.000000e+00 3845.0
13 TraesCS1B01G142400 chr2B 94.639 1231 19 5 3070 4275 797951073 797952281 0.000000e+00 1864.0
14 TraesCS1B01G142400 chr2B 94.027 1239 27 14 3062 4275 691190927 691192143 0.000000e+00 1834.0
15 TraesCS1B01G142400 chr2B 95.018 281 14 0 412 692 481884410 481884130 7.110000e-120 442.0
16 TraesCS1B01G142400 chr2B 95.000 280 10 2 414 689 254620598 254620877 3.310000e-118 436.0
17 TraesCS1B01G142400 chr6B 95.319 2478 64 6 3064 5514 7965125 7967577 0.000000e+00 3886.0
18 TraesCS1B01G142400 chr6B 93.942 1238 20 15 3070 4275 481036501 481037715 0.000000e+00 1820.0
19 TraesCS1B01G142400 chr6B 92.371 367 27 1 5839 6205 227780832 227780467 8.880000e-144 521.0
20 TraesCS1B01G142400 chr6B 93.289 149 10 0 6342 6490 227780468 227780320 3.630000e-53 220.0
21 TraesCS1B01G142400 chr6B 91.852 135 11 0 6342 6476 640182084 640182218 1.020000e-43 189.0
22 TraesCS1B01G142400 chr6B 86.000 100 6 5 6685 6777 227780324 227780226 4.930000e-17 100.0
23 TraesCS1B01G142400 chr6A 95.304 2470 65 6 3068 5510 459930167 459927722 0.000000e+00 3871.0
24 TraesCS1B01G142400 chr6A 94.560 2022 50 8 3070 5064 67011523 67009535 0.000000e+00 3070.0
25 TraesCS1B01G142400 chr6A 96.018 1130 20 3 3068 4197 119757029 119755925 0.000000e+00 1814.0
26 TraesCS1B01G142400 chr6A 96.479 284 7 2 417 699 608314547 608314266 4.220000e-127 466.0
27 TraesCS1B01G142400 chr6A 95.668 277 12 0 415 691 531702033 531702309 5.490000e-121 446.0
28 TraesCS1B01G142400 chr6A 91.398 93 8 0 6083 6175 435402868 435402776 2.260000e-25 128.0
29 TraesCS1B01G142400 chr1A 95.267 2472 66 12 3070 5515 148262157 148259711 0.000000e+00 3869.0
30 TraesCS1B01G142400 chr1A 95.674 1572 47 9 1502 3070 147356352 147354799 0.000000e+00 2507.0
31 TraesCS1B01G142400 chr1A 96.507 1460 40 4 5509 6968 147354791 147353343 0.000000e+00 2403.0
32 TraesCS1B01G142400 chr1A 93.750 1248 23 9 3060 4275 343662026 343663250 0.000000e+00 1821.0
33 TraesCS1B01G142400 chr1A 97.304 816 16 3 690 1502 147357194 147356382 0.000000e+00 1380.0
34 TraesCS1B01G142400 chr1A 94.425 287 13 3 412 695 563257015 563256729 9.200000e-119 438.0
35 TraesCS1B01G142400 chr1A 94.366 284 15 1 409 691 481919566 481919849 1.190000e-117 435.0
36 TraesCS1B01G142400 chr1A 93.130 262 9 4 6966 7221 147353227 147352969 7.310000e-100 375.0
37 TraesCS1B01G142400 chr1A 90.000 220 21 1 7298 7516 147345488 147345269 4.560000e-72 283.0
38 TraesCS1B01G142400 chr1A 96.000 175 6 1 225 399 147357382 147357209 4.560000e-72 283.0
39 TraesCS1B01G142400 chr1A 81.013 79 15 0 1 79 29198039 29197961 6.470000e-06 63.9
40 TraesCS1B01G142400 chr7A 95.184 2471 67 7 3069 5512 697204749 697202304 0.000000e+00 3856.0
41 TraesCS1B01G142400 chr7A 96.403 278 8 2 415 691 84863867 84864143 2.540000e-124 457.0
42 TraesCS1B01G142400 chr7A 90.141 71 3 2 7517 7585 67498232 67498300 1.070000e-13 89.8
43 TraesCS1B01G142400 chr7A 81.013 79 15 0 1 79 85339849 85339771 6.470000e-06 63.9
44 TraesCS1B01G142400 chr3A 95.182 2470 66 7 3069 5510 424455144 424457588 0.000000e+00 3853.0
45 TraesCS1B01G142400 chr3A 85.161 155 10 10 992 1134 113358879 113358726 6.240000e-31 147.0
46 TraesCS1B01G142400 chr3A 81.013 79 15 0 1 79 171249988 171249910 6.470000e-06 63.9
47 TraesCS1B01G142400 chr3B 95.107 2473 67 8 3070 5515 820707051 820709496 0.000000e+00 3847.0
48 TraesCS1B01G142400 chr3B 95.305 2066 45 20 3070 5107 623087937 623089978 0.000000e+00 3230.0
49 TraesCS1B01G142400 chr3B 94.995 2058 48 12 3070 5100 256435566 256437595 0.000000e+00 3179.0
50 TraesCS1B01G142400 chr3B 88.806 134 13 1 6356 6487 28728992 28729125 6.200000e-36 163.0
51 TraesCS1B01G142400 chr3B 87.313 134 15 1 6356 6487 824559655 824559788 1.340000e-32 152.0
52 TraesCS1B01G142400 chr3B 84.967 153 10 8 992 1132 146189585 146189434 8.070000e-30 143.0
53 TraesCS1B01G142400 chr3B 92.727 55 2 2 7517 7571 610479063 610479011 2.310000e-10 78.7
54 TraesCS1B01G142400 chr3B 100.000 37 0 0 696 732 465344860 465344896 1.390000e-07 69.4
55 TraesCS1B01G142400 chr3B 94.595 37 1 1 7229 7265 640077901 640077936 1.000000e-03 56.5
56 TraesCS1B01G142400 chr4B 95.069 2474 69 6 3069 5514 658183702 658181254 0.000000e+00 3843.0
57 TraesCS1B01G142400 chr4B 94.283 2064 63 5 3070 5107 615150167 615152201 0.000000e+00 3107.0
58 TraesCS1B01G142400 chr4B 86.885 61 7 1 7434 7493 639224739 639224799 5.000000e-07 67.6
59 TraesCS1B01G142400 chr7B 95.402 2066 44 5 3068 5107 28889568 28891608 0.000000e+00 3241.0
60 TraesCS1B01G142400 chr7B 93.866 1239 21 13 3069 4275 649990206 649988991 0.000000e+00 1816.0
61 TraesCS1B01G142400 chr7B 94.444 144 7 1 6342 6484 735596821 735596678 3.630000e-53 220.0
62 TraesCS1B01G142400 chr7B 92.771 83 6 0 6123 6205 735596902 735596820 3.780000e-23 121.0
63 TraesCS1B01G142400 chr7B 81.013 79 15 0 1 79 433796373 433796295 6.470000e-06 63.9
64 TraesCS1B01G142400 chr7B 81.579 76 14 0 1 76 740173128 740173203 6.470000e-06 63.9
65 TraesCS1B01G142400 chr5B 94.803 2078 52 13 3061 5107 214175625 214177677 0.000000e+00 3188.0
66 TraesCS1B01G142400 chr5B 94.860 1673 36 12 3464 5107 393984397 393986048 0.000000e+00 2567.0
67 TraesCS1B01G142400 chr1D 95.280 2034 55 8 5510 7516 142659471 142661490 0.000000e+00 3186.0
68 TraesCS1B01G142400 chr1D 98.407 816 8 2 690 1502 142657110 142657923 0.000000e+00 1430.0
69 TraesCS1B01G142400 chr1D 95.331 771 28 7 1502 2270 142657953 142658717 0.000000e+00 1218.0
70 TraesCS1B01G142400 chr1D 95.431 766 17 6 2305 3070 142658715 142659462 0.000000e+00 1205.0
71 TraesCS1B01G142400 chr1D 96.698 212 5 2 188 399 142656886 142657095 1.230000e-92 351.0
72 TraesCS1B01G142400 chr1D 84.810 158 21 3 7361 7516 200097054 200097210 1.040000e-33 156.0
73 TraesCS1B01G142400 chr1D 93.878 49 3 0 156 204 142656791 142656839 2.990000e-09 75.0
74 TraesCS1B01G142400 chr1D 93.750 48 3 0 7671 7718 142664771 142664818 1.070000e-08 73.1
75 TraesCS1B01G142400 chrUn 97.445 274 6 1 417 689 62222262 62222535 4.220000e-127 466.0
76 TraesCS1B01G142400 chr7D 93.284 134 7 1 6356 6487 175117366 175117499 6.110000e-46 196.0
77 TraesCS1B01G142400 chr7D 88.732 71 4 2 7517 7585 458015105 458015173 4.960000e-12 84.2
78 TraesCS1B01G142400 chr7D 100.000 31 0 0 7229 7259 558165167 558165137 3.010000e-04 58.4
79 TraesCS1B01G142400 chr5D 87.288 118 15 0 6373 6490 391825400 391825283 1.350000e-27 135.0
80 TraesCS1B01G142400 chr3D 90.291 103 10 0 1030 1132 95252778 95252676 1.350000e-27 135.0
81 TraesCS1B01G142400 chr3D 81.955 133 22 2 1 133 520245227 520245357 2.280000e-20 111.0
82 TraesCS1B01G142400 chr3D 89.706 68 3 2 7520 7585 168504808 168504743 4.960000e-12 84.2
83 TraesCS1B01G142400 chr4D 86.441 118 16 0 6373 6490 183779620 183779503 6.290000e-26 130.0
84 TraesCS1B01G142400 chr4D 86.765 68 7 2 7427 7493 497923338 497923404 2.990000e-09 75.0
85 TraesCS1B01G142400 chr6D 85.345 116 17 0 6375 6490 46227923 46227808 3.780000e-23 121.0
86 TraesCS1B01G142400 chr6D 92.727 55 2 1 7517 7571 132062292 132062240 2.310000e-10 78.7
87 TraesCS1B01G142400 chr4A 81.013 79 15 0 1 79 19526656 19526578 6.470000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G142400 chr1B 191954367 191962084 7717 False 14253.000000 14253 100.000000 1 7718 1 chr1B.!!$F3 7717
1 TraesCS1B01G142400 chr1B 84424636 84426671 2035 False 3136.000000 3136 94.533000 3070 5107 1 chr1B.!!$F1 2037
2 TraesCS1B01G142400 chr5A 400782207 400784647 2440 True 3888.000000 3888 95.460000 3069 5510 1 chr5A.!!$R2 2441
3 TraesCS1B01G142400 chr5A 30052639 30054680 2041 False 3264.000000 3264 95.591000 3070 5107 1 chr5A.!!$F1 2037
4 TraesCS1B01G142400 chr2B 337958342 337960787 2445 True 3888.000000 3888 95.425000 3070 5511 1 chr2B.!!$R1 2441
5 TraesCS1B01G142400 chr2B 41487896 41490342 2446 False 3873.000000 3873 95.307000 3067 5510 1 chr2B.!!$F1 2443
6 TraesCS1B01G142400 chr2B 753592764 753595205 2441 True 3845.000000 3845 95.140000 3068 5510 1 chr2B.!!$R3 2442
7 TraesCS1B01G142400 chr2B 797951073 797952281 1208 False 1864.000000 1864 94.639000 3070 4275 1 chr2B.!!$F4 1205
8 TraesCS1B01G142400 chr2B 691190927 691192143 1216 False 1834.000000 1834 94.027000 3062 4275 1 chr2B.!!$F3 1213
9 TraesCS1B01G142400 chr6B 7965125 7967577 2452 False 3886.000000 3886 95.319000 3064 5514 1 chr6B.!!$F1 2450
10 TraesCS1B01G142400 chr6B 481036501 481037715 1214 False 1820.000000 1820 93.942000 3070 4275 1 chr6B.!!$F2 1205
11 TraesCS1B01G142400 chr6B 227780226 227780832 606 True 280.333333 521 90.553333 5839 6777 3 chr6B.!!$R1 938
12 TraesCS1B01G142400 chr6A 459927722 459930167 2445 True 3871.000000 3871 95.304000 3068 5510 1 chr6A.!!$R4 2442
13 TraesCS1B01G142400 chr6A 67009535 67011523 1988 True 3070.000000 3070 94.560000 3070 5064 1 chr6A.!!$R1 1994
14 TraesCS1B01G142400 chr6A 119755925 119757029 1104 True 1814.000000 1814 96.018000 3068 4197 1 chr6A.!!$R2 1129
15 TraesCS1B01G142400 chr1A 148259711 148262157 2446 True 3869.000000 3869 95.267000 3070 5515 1 chr1A.!!$R3 2445
16 TraesCS1B01G142400 chr1A 343662026 343663250 1224 False 1821.000000 1821 93.750000 3060 4275 1 chr1A.!!$F1 1215
17 TraesCS1B01G142400 chr1A 147352969 147357382 4413 True 1389.600000 2507 95.723000 225 7221 5 chr1A.!!$R5 6996
18 TraesCS1B01G142400 chr7A 697202304 697204749 2445 True 3856.000000 3856 95.184000 3069 5512 1 chr7A.!!$R2 2443
19 TraesCS1B01G142400 chr3A 424455144 424457588 2444 False 3853.000000 3853 95.182000 3069 5510 1 chr3A.!!$F1 2441
20 TraesCS1B01G142400 chr3B 820707051 820709496 2445 False 3847.000000 3847 95.107000 3070 5515 1 chr3B.!!$F6 2445
21 TraesCS1B01G142400 chr3B 623087937 623089978 2041 False 3230.000000 3230 95.305000 3070 5107 1 chr3B.!!$F4 2037
22 TraesCS1B01G142400 chr3B 256435566 256437595 2029 False 3179.000000 3179 94.995000 3070 5100 1 chr3B.!!$F2 2030
23 TraesCS1B01G142400 chr4B 658181254 658183702 2448 True 3843.000000 3843 95.069000 3069 5514 1 chr4B.!!$R1 2445
24 TraesCS1B01G142400 chr4B 615150167 615152201 2034 False 3107.000000 3107 94.283000 3070 5107 1 chr4B.!!$F1 2037
25 TraesCS1B01G142400 chr7B 28889568 28891608 2040 False 3241.000000 3241 95.402000 3068 5107 1 chr7B.!!$F1 2039
26 TraesCS1B01G142400 chr7B 649988991 649990206 1215 True 1816.000000 1816 93.866000 3069 4275 1 chr7B.!!$R2 1206
27 TraesCS1B01G142400 chr5B 214175625 214177677 2052 False 3188.000000 3188 94.803000 3061 5107 1 chr5B.!!$F1 2046
28 TraesCS1B01G142400 chr5B 393984397 393986048 1651 False 2567.000000 2567 94.860000 3464 5107 1 chr5B.!!$F2 1643
29 TraesCS1B01G142400 chr1D 142656791 142664818 8027 False 1076.871429 3186 95.539286 156 7718 7 chr1D.!!$F2 7562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 500 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40 F
436 501 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49 F
1961 2060 1.665679 CTGTGTGTTTCTGCTGTCGTT 59.334 47.619 0.00 0.00 0.00 3.85 F
3397 3510 0.535335 AGCTCCAAGAATACGCGGAA 59.465 50.000 12.47 0.00 0.00 4.30 F
3808 3926 0.438830 GAGTGGAACGTAGCGCAAAG 59.561 55.000 11.47 1.66 45.86 2.77 F
3816 3934 0.669318 CGTAGCGCAAAGGAGTGGAA 60.669 55.000 11.47 0.00 0.00 3.53 F
5343 6291 0.101399 TTGCGTGCACGTTTGGAAAT 59.899 45.000 36.80 0.00 42.22 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 2056 2.509569 ACATGGCAAATGTACCAACGA 58.490 42.857 2.62 0.0 39.96 3.85 R
2190 2290 6.945636 TGGGTTTCCTTGATCTCTTACTTA 57.054 37.500 0.00 0.0 0.00 2.24 R
3800 3918 0.036732 TCATTCCACTCCTTTGCGCT 59.963 50.000 9.73 0.0 0.00 5.92 R
4563 4738 1.547675 GGACCAAAACTCTGCCATCCA 60.548 52.381 0.00 0.0 0.00 3.41 R
5053 6000 2.358247 CCACCACTTTCGTCCGGG 60.358 66.667 0.00 0.0 0.00 5.73 R
5589 6933 7.201679 GCTCATGGTAATTATCCAGTCATATGC 60.202 40.741 0.00 0.0 38.42 3.14 R
7168 8643 0.031585 CGTCTGACCTCCGAACAACA 59.968 55.000 1.55 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.559238 ACATTGAATGTGACGGAAAGC 57.441 42.857 10.45 0.00 43.01 3.51
29 30 3.149196 ACATTGAATGTGACGGAAAGCT 58.851 40.909 10.45 0.00 43.01 3.74
30 31 3.058016 ACATTGAATGTGACGGAAAGCTG 60.058 43.478 10.45 0.00 43.01 4.24
31 32 2.254546 TGAATGTGACGGAAAGCTGT 57.745 45.000 0.00 0.00 35.98 4.40
39 40 2.688507 GACGGAAAGCTGTCTTGATGA 58.311 47.619 3.34 0.00 45.15 2.92
40 41 3.265791 GACGGAAAGCTGTCTTGATGAT 58.734 45.455 3.34 0.00 45.15 2.45
41 42 4.433615 GACGGAAAGCTGTCTTGATGATA 58.566 43.478 3.34 0.00 45.15 2.15
42 43 4.184629 ACGGAAAGCTGTCTTGATGATAC 58.815 43.478 3.34 0.00 31.78 2.24
43 44 4.081420 ACGGAAAGCTGTCTTGATGATACT 60.081 41.667 3.34 0.00 31.78 2.12
44 45 4.872691 CGGAAAGCTGTCTTGATGATACTT 59.127 41.667 3.34 0.00 31.78 2.24
45 46 5.006165 CGGAAAGCTGTCTTGATGATACTTC 59.994 44.000 3.34 0.00 31.78 3.01
46 47 6.112058 GGAAAGCTGTCTTGATGATACTTCT 58.888 40.000 3.34 0.00 31.78 2.85
47 48 7.268586 GGAAAGCTGTCTTGATGATACTTCTA 58.731 38.462 3.34 0.00 31.78 2.10
48 49 7.437862 GGAAAGCTGTCTTGATGATACTTCTAG 59.562 40.741 3.34 0.00 31.78 2.43
49 50 5.841810 AGCTGTCTTGATGATACTTCTAGC 58.158 41.667 0.00 0.00 0.00 3.42
50 51 5.598005 AGCTGTCTTGATGATACTTCTAGCT 59.402 40.000 0.00 0.00 0.00 3.32
51 52 6.098124 AGCTGTCTTGATGATACTTCTAGCTT 59.902 38.462 0.00 0.00 33.27 3.74
52 53 6.420604 GCTGTCTTGATGATACTTCTAGCTTC 59.579 42.308 0.00 0.00 0.00 3.86
53 54 7.652524 TGTCTTGATGATACTTCTAGCTTCT 57.347 36.000 0.00 0.00 0.00 2.85
54 55 8.072321 TGTCTTGATGATACTTCTAGCTTCTT 57.928 34.615 0.00 0.00 0.00 2.52
55 56 7.978414 TGTCTTGATGATACTTCTAGCTTCTTG 59.022 37.037 0.00 0.00 0.00 3.02
56 57 8.194104 GTCTTGATGATACTTCTAGCTTCTTGA 58.806 37.037 0.00 0.00 0.00 3.02
57 58 8.922237 TCTTGATGATACTTCTAGCTTCTTGAT 58.078 33.333 0.00 0.00 0.00 2.57
58 59 8.883954 TTGATGATACTTCTAGCTTCTTGATG 57.116 34.615 0.00 0.00 0.00 3.07
59 60 8.242729 TGATGATACTTCTAGCTTCTTGATGA 57.757 34.615 0.00 0.00 0.00 2.92
60 61 8.140628 TGATGATACTTCTAGCTTCTTGATGAC 58.859 37.037 0.00 0.00 0.00 3.06
61 62 6.810911 TGATACTTCTAGCTTCTTGATGACC 58.189 40.000 0.00 0.00 0.00 4.02
62 63 6.381133 TGATACTTCTAGCTTCTTGATGACCA 59.619 38.462 0.00 0.00 0.00 4.02
63 64 5.083533 ACTTCTAGCTTCTTGATGACCAG 57.916 43.478 0.00 0.00 0.00 4.00
64 65 3.533606 TCTAGCTTCTTGATGACCAGC 57.466 47.619 0.00 0.00 0.00 4.85
65 66 2.169352 TCTAGCTTCTTGATGACCAGCC 59.831 50.000 0.00 0.00 30.82 4.85
66 67 0.990374 AGCTTCTTGATGACCAGCCT 59.010 50.000 0.00 0.00 30.82 4.58
67 68 1.093159 GCTTCTTGATGACCAGCCTG 58.907 55.000 0.00 0.00 0.00 4.85
68 69 1.612726 GCTTCTTGATGACCAGCCTGT 60.613 52.381 0.00 0.00 0.00 4.00
69 70 2.787994 CTTCTTGATGACCAGCCTGTT 58.212 47.619 0.00 0.00 0.00 3.16
70 71 2.189594 TCTTGATGACCAGCCTGTTG 57.810 50.000 0.00 0.00 0.00 3.33
71 72 1.171308 CTTGATGACCAGCCTGTTGG 58.829 55.000 0.00 0.00 44.09 3.77
82 83 2.187073 CCTGTTGGCTGAATGCTCC 58.813 57.895 0.00 0.00 42.39 4.70
83 84 0.609957 CCTGTTGGCTGAATGCTCCA 60.610 55.000 0.00 0.00 42.39 3.86
84 85 1.250328 CTGTTGGCTGAATGCTCCAA 58.750 50.000 0.00 0.00 42.39 3.53
85 86 1.614903 CTGTTGGCTGAATGCTCCAAA 59.385 47.619 0.33 0.00 41.05 3.28
86 87 2.036217 CTGTTGGCTGAATGCTCCAAAA 59.964 45.455 0.33 0.00 41.05 2.44
87 88 2.036217 TGTTGGCTGAATGCTCCAAAAG 59.964 45.455 0.33 0.00 41.05 2.27
88 89 1.999648 TGGCTGAATGCTCCAAAAGT 58.000 45.000 0.00 0.00 42.39 2.66
89 90 1.614903 TGGCTGAATGCTCCAAAAGTG 59.385 47.619 0.00 0.00 42.39 3.16
90 91 1.670967 GGCTGAATGCTCCAAAAGTGC 60.671 52.381 0.00 0.00 42.39 4.40
91 92 1.271656 GCTGAATGCTCCAAAAGTGCT 59.728 47.619 0.00 0.00 38.95 4.40
92 93 2.288640 GCTGAATGCTCCAAAAGTGCTT 60.289 45.455 0.00 0.00 38.95 3.91
93 94 3.801293 GCTGAATGCTCCAAAAGTGCTTT 60.801 43.478 0.00 0.00 38.95 3.51
94 95 4.374399 CTGAATGCTCCAAAAGTGCTTTT 58.626 39.130 4.26 4.26 42.91 2.27
95 96 5.528043 TGAATGCTCCAAAAGTGCTTTTA 57.472 34.783 9.27 0.00 40.45 1.52
96 97 5.911752 TGAATGCTCCAAAAGTGCTTTTAA 58.088 33.333 9.27 1.79 40.45 1.52
97 98 6.523840 TGAATGCTCCAAAAGTGCTTTTAAT 58.476 32.000 9.27 0.00 40.45 1.40
98 99 6.424509 TGAATGCTCCAAAAGTGCTTTTAATG 59.575 34.615 9.27 0.00 40.45 1.90
99 100 5.528043 TGCTCCAAAAGTGCTTTTAATGA 57.472 34.783 9.27 6.49 40.45 2.57
100 101 5.911752 TGCTCCAAAAGTGCTTTTAATGAA 58.088 33.333 9.27 0.00 40.45 2.57
101 102 6.523840 TGCTCCAAAAGTGCTTTTAATGAAT 58.476 32.000 9.27 0.00 40.45 2.57
102 103 7.665690 TGCTCCAAAAGTGCTTTTAATGAATA 58.334 30.769 9.27 0.00 40.45 1.75
103 104 8.313292 TGCTCCAAAAGTGCTTTTAATGAATAT 58.687 29.630 9.27 0.00 40.45 1.28
104 105 9.801873 GCTCCAAAAGTGCTTTTAATGAATATA 57.198 29.630 9.27 0.00 40.45 0.86
122 123 8.682936 TGAATATAAAGCTCTCTGATTTTCCC 57.317 34.615 0.00 0.00 35.69 3.97
123 124 8.497745 TGAATATAAAGCTCTCTGATTTTCCCT 58.502 33.333 0.00 0.00 35.69 4.20
124 125 8.688747 AATATAAAGCTCTCTGATTTTCCCTG 57.311 34.615 0.00 0.00 35.69 4.45
125 126 4.647564 AAAGCTCTCTGATTTTCCCTGA 57.352 40.909 0.00 0.00 28.83 3.86
126 127 4.647564 AAGCTCTCTGATTTTCCCTGAA 57.352 40.909 0.00 0.00 0.00 3.02
127 128 4.647564 AGCTCTCTGATTTTCCCTGAAA 57.352 40.909 0.00 0.00 0.00 2.69
128 129 4.990526 AGCTCTCTGATTTTCCCTGAAAA 58.009 39.130 4.64 4.64 44.04 2.29
129 130 5.388654 AGCTCTCTGATTTTCCCTGAAAAA 58.611 37.500 6.14 0.00 43.32 1.94
164 165 4.508551 TGATATTGGAGCACTTGGACAT 57.491 40.909 0.00 0.00 0.00 3.06
206 270 3.827784 CTCGCGTGCGGTCTTTCG 61.828 66.667 14.89 0.00 40.25 3.46
246 310 0.958091 CGGGAGAAACAAACATGGCA 59.042 50.000 0.00 0.00 0.00 4.92
305 370 0.540365 CTCCCACCACACCAGCAATT 60.540 55.000 0.00 0.00 0.00 2.32
392 457 0.886490 CGCCACCAGCACTTTTCTCT 60.886 55.000 0.00 0.00 44.04 3.10
399 464 3.072944 CCAGCACTTTTCTCTTCCTGAG 58.927 50.000 0.00 0.00 43.96 3.35
400 465 3.495806 CCAGCACTTTTCTCTTCCTGAGT 60.496 47.826 0.00 0.00 43.13 3.41
401 466 3.745458 CAGCACTTTTCTCTTCCTGAGTC 59.255 47.826 0.00 0.00 43.13 3.36
402 467 3.070748 GCACTTTTCTCTTCCTGAGTCC 58.929 50.000 0.00 0.00 43.13 3.85
403 468 3.244387 GCACTTTTCTCTTCCTGAGTCCT 60.244 47.826 0.00 0.00 43.13 3.85
404 469 4.314121 CACTTTTCTCTTCCTGAGTCCTG 58.686 47.826 0.00 0.00 43.13 3.86
405 470 4.039730 CACTTTTCTCTTCCTGAGTCCTGA 59.960 45.833 0.00 0.00 43.13 3.86
407 472 1.827681 TCTCTTCCTGAGTCCTGACG 58.172 55.000 0.00 0.00 43.13 4.35
409 474 2.305052 TCTCTTCCTGAGTCCTGACGTA 59.695 50.000 0.00 0.00 43.13 3.57
410 475 2.420722 CTCTTCCTGAGTCCTGACGTAC 59.579 54.545 0.00 0.00 37.99 3.67
412 477 3.262660 TCTTCCTGAGTCCTGACGTACTA 59.737 47.826 0.00 0.00 36.20 1.82
413 478 2.983229 TCCTGAGTCCTGACGTACTAC 58.017 52.381 0.00 0.00 36.20 2.73
414 479 2.570752 TCCTGAGTCCTGACGTACTACT 59.429 50.000 0.00 0.00 36.20 2.57
415 480 3.771479 TCCTGAGTCCTGACGTACTACTA 59.229 47.826 0.00 0.00 36.20 1.82
416 481 4.223700 TCCTGAGTCCTGACGTACTACTAA 59.776 45.833 0.00 0.00 36.20 2.24
417 482 4.571580 CCTGAGTCCTGACGTACTACTAAG 59.428 50.000 0.00 0.00 36.20 2.18
418 483 4.511527 TGAGTCCTGACGTACTACTAAGG 58.488 47.826 0.00 0.00 36.20 2.69
419 484 3.876320 GAGTCCTGACGTACTACTAAGGG 59.124 52.174 0.00 0.00 36.20 3.95
420 485 2.357323 GTCCTGACGTACTACTAAGGGC 59.643 54.545 0.00 0.00 0.00 5.19
421 486 2.025981 TCCTGACGTACTACTAAGGGCA 60.026 50.000 0.00 0.00 0.00 5.36
422 487 2.957006 CCTGACGTACTACTAAGGGCAT 59.043 50.000 0.00 0.00 0.00 4.40
423 488 3.243434 CCTGACGTACTACTAAGGGCATG 60.243 52.174 0.00 0.00 0.00 4.06
424 489 3.359033 TGACGTACTACTAAGGGCATGT 58.641 45.455 0.00 0.00 0.00 3.21
425 490 4.525996 TGACGTACTACTAAGGGCATGTA 58.474 43.478 0.00 0.00 0.00 2.29
426 491 4.336433 TGACGTACTACTAAGGGCATGTAC 59.664 45.833 0.00 0.00 0.00 2.90
427 492 4.272489 ACGTACTACTAAGGGCATGTACA 58.728 43.478 0.00 0.00 32.41 2.90
428 493 4.706476 ACGTACTACTAAGGGCATGTACAA 59.294 41.667 0.00 0.00 32.41 2.41
429 494 5.361857 ACGTACTACTAAGGGCATGTACAAT 59.638 40.000 0.00 0.00 32.41 2.71
430 495 5.690409 CGTACTACTAAGGGCATGTACAATG 59.310 44.000 0.00 0.12 32.41 2.82
431 496 5.036117 ACTACTAAGGGCATGTACAATGG 57.964 43.478 0.00 0.00 0.00 3.16
432 497 4.473559 ACTACTAAGGGCATGTACAATGGT 59.526 41.667 0.00 0.00 0.00 3.55
433 498 3.620488 ACTAAGGGCATGTACAATGGTG 58.380 45.455 0.00 0.00 0.00 4.17
434 499 1.185315 AAGGGCATGTACAATGGTGC 58.815 50.000 10.12 10.12 36.88 5.01
435 500 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
436 501 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
437 502 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
438 503 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
439 504 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
440 505 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
441 506 5.063204 GGCATGTACAATGGTGCTATCTTA 58.937 41.667 16.47 0.00 37.70 2.10
442 507 5.180117 GGCATGTACAATGGTGCTATCTTAG 59.820 44.000 16.47 0.00 37.70 2.18
443 508 5.760253 GCATGTACAATGGTGCTATCTTAGT 59.240 40.000 11.12 0.00 34.85 2.24
444 509 6.929049 GCATGTACAATGGTGCTATCTTAGTA 59.071 38.462 11.12 0.00 34.85 1.82
445 510 7.116948 GCATGTACAATGGTGCTATCTTAGTAG 59.883 40.741 11.12 0.00 34.85 2.57
446 511 7.655521 TGTACAATGGTGCTATCTTAGTAGT 57.344 36.000 0.00 0.00 0.00 2.73
447 512 7.489160 TGTACAATGGTGCTATCTTAGTAGTG 58.511 38.462 0.00 0.00 0.00 2.74
448 513 5.360591 ACAATGGTGCTATCTTAGTAGTGC 58.639 41.667 0.00 0.00 0.00 4.40
449 514 4.608948 ATGGTGCTATCTTAGTAGTGCC 57.391 45.455 0.00 0.00 0.00 5.01
450 515 3.371034 TGGTGCTATCTTAGTAGTGCCA 58.629 45.455 0.00 0.00 0.00 4.92
451 516 3.132289 TGGTGCTATCTTAGTAGTGCCAC 59.868 47.826 0.00 0.00 0.00 5.01
452 517 3.372954 GTGCTATCTTAGTAGTGCCACG 58.627 50.000 0.00 0.00 0.00 4.94
453 518 3.021695 TGCTATCTTAGTAGTGCCACGT 58.978 45.455 0.00 0.00 0.00 4.49
454 519 4.036027 GTGCTATCTTAGTAGTGCCACGTA 59.964 45.833 0.00 0.00 0.00 3.57
455 520 4.275196 TGCTATCTTAGTAGTGCCACGTAG 59.725 45.833 0.00 0.00 0.00 3.51
456 521 4.320348 GCTATCTTAGTAGTGCCACGTAGG 60.320 50.000 0.00 0.00 41.84 3.18
457 522 3.354948 TCTTAGTAGTGCCACGTAGGA 57.645 47.619 8.04 0.00 41.22 2.94
458 523 3.894759 TCTTAGTAGTGCCACGTAGGAT 58.105 45.455 8.04 0.00 41.22 3.24
459 524 3.881688 TCTTAGTAGTGCCACGTAGGATC 59.118 47.826 8.04 0.00 41.22 3.36
460 525 2.139323 AGTAGTGCCACGTAGGATCA 57.861 50.000 8.04 0.00 41.22 2.92
461 526 2.453521 AGTAGTGCCACGTAGGATCAA 58.546 47.619 8.04 0.00 41.22 2.57
462 527 3.031736 AGTAGTGCCACGTAGGATCAAT 58.968 45.455 8.04 0.63 41.22 2.57
463 528 2.315925 AGTGCCACGTAGGATCAATG 57.684 50.000 8.04 0.00 41.22 2.82
464 529 1.831106 AGTGCCACGTAGGATCAATGA 59.169 47.619 8.04 0.00 41.22 2.57
465 530 2.435805 AGTGCCACGTAGGATCAATGAT 59.564 45.455 0.00 0.00 41.22 2.45
466 531 2.545526 GTGCCACGTAGGATCAATGATG 59.454 50.000 0.00 0.00 41.22 3.07
467 532 2.433970 TGCCACGTAGGATCAATGATGA 59.566 45.455 0.00 0.00 41.22 2.92
468 533 3.062763 GCCACGTAGGATCAATGATGAG 58.937 50.000 0.00 0.00 41.22 2.90
469 534 3.657634 CCACGTAGGATCAATGATGAGG 58.342 50.000 0.00 0.00 39.39 3.86
470 535 3.070159 CCACGTAGGATCAATGATGAGGT 59.930 47.826 0.00 0.00 39.39 3.85
471 536 4.053983 CACGTAGGATCAATGATGAGGTG 58.946 47.826 0.00 4.42 39.39 4.00
472 537 3.070159 ACGTAGGATCAATGATGAGGTGG 59.930 47.826 0.00 0.00 39.39 4.61
473 538 3.321968 CGTAGGATCAATGATGAGGTGGA 59.678 47.826 0.00 0.00 39.39 4.02
474 539 4.560311 CGTAGGATCAATGATGAGGTGGAG 60.560 50.000 0.00 0.00 39.39 3.86
475 540 2.709934 AGGATCAATGATGAGGTGGAGG 59.290 50.000 0.00 0.00 39.39 4.30
476 541 2.707791 GGATCAATGATGAGGTGGAGGA 59.292 50.000 0.00 0.00 39.39 3.71
477 542 3.244491 GGATCAATGATGAGGTGGAGGAG 60.244 52.174 0.00 0.00 39.39 3.69
478 543 3.120468 TCAATGATGAGGTGGAGGAGA 57.880 47.619 0.00 0.00 0.00 3.71
479 544 3.036819 TCAATGATGAGGTGGAGGAGAG 58.963 50.000 0.00 0.00 0.00 3.20
480 545 3.036819 CAATGATGAGGTGGAGGAGAGA 58.963 50.000 0.00 0.00 0.00 3.10
481 546 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
482 547 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
483 548 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
484 549 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
485 550 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
486 551 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
487 552 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
488 553 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
489 554 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
490 555 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
491 556 4.712337 GGTGGAGGAGAGAGAACTCATAAA 59.288 45.833 4.64 0.00 44.79 1.40
492 557 5.187967 GGTGGAGGAGAGAGAACTCATAAAA 59.812 44.000 4.64 0.00 44.79 1.52
493 558 6.295916 GGTGGAGGAGAGAGAACTCATAAAAA 60.296 42.308 4.64 0.00 44.79 1.94
520 585 9.574516 AAGGCTTGTCTTCTTTTATTTAAGAGA 57.425 29.630 0.00 0.00 35.69 3.10
521 586 9.574516 AGGCTTGTCTTCTTTTATTTAAGAGAA 57.425 29.630 3.99 3.99 35.69 2.87
552 617 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
553 618 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
554 619 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
555 620 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
556 621 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
557 622 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
558 623 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
559 624 5.419542 TCTTAGCACAATATGTCTCACCAC 58.580 41.667 0.00 0.00 0.00 4.16
560 625 2.621338 AGCACAATATGTCTCACCACG 58.379 47.619 0.00 0.00 0.00 4.94
561 626 2.028112 AGCACAATATGTCTCACCACGT 60.028 45.455 0.00 0.00 0.00 4.49
562 627 2.742053 GCACAATATGTCTCACCACGTT 59.258 45.455 0.00 0.00 0.00 3.99
563 628 3.188460 GCACAATATGTCTCACCACGTTT 59.812 43.478 0.00 0.00 0.00 3.60
564 629 4.320202 GCACAATATGTCTCACCACGTTTT 60.320 41.667 0.00 0.00 0.00 2.43
565 630 5.757886 CACAATATGTCTCACCACGTTTTT 58.242 37.500 0.00 0.00 0.00 1.94
566 631 6.566942 GCACAATATGTCTCACCACGTTTTTA 60.567 38.462 0.00 0.00 0.00 1.52
567 632 7.015289 CACAATATGTCTCACCACGTTTTTAG 58.985 38.462 0.00 0.00 0.00 1.85
568 633 6.148811 ACAATATGTCTCACCACGTTTTTAGG 59.851 38.462 0.00 0.00 0.00 2.69
569 634 3.823281 TGTCTCACCACGTTTTTAGGA 57.177 42.857 0.00 0.00 0.00 2.94
570 635 4.139859 TGTCTCACCACGTTTTTAGGAA 57.860 40.909 0.00 0.00 0.00 3.36
571 636 4.710324 TGTCTCACCACGTTTTTAGGAAT 58.290 39.130 0.00 0.00 0.00 3.01
572 637 5.127491 TGTCTCACCACGTTTTTAGGAATT 58.873 37.500 0.00 0.00 0.00 2.17
573 638 5.008217 TGTCTCACCACGTTTTTAGGAATTG 59.992 40.000 0.00 0.00 0.00 2.32
574 639 4.023536 TCTCACCACGTTTTTAGGAATTGC 60.024 41.667 0.00 0.00 0.00 3.56
575 640 3.886505 TCACCACGTTTTTAGGAATTGCT 59.113 39.130 4.41 4.41 0.00 3.91
576 641 5.064558 TCACCACGTTTTTAGGAATTGCTA 58.935 37.500 2.04 2.04 0.00 3.49
577 642 5.180492 TCACCACGTTTTTAGGAATTGCTAG 59.820 40.000 6.79 0.00 0.00 3.42
578 643 5.048991 CACCACGTTTTTAGGAATTGCTAGT 60.049 40.000 6.79 0.00 0.00 2.57
579 644 5.533528 ACCACGTTTTTAGGAATTGCTAGTT 59.466 36.000 6.79 0.00 0.00 2.24
580 645 6.711645 ACCACGTTTTTAGGAATTGCTAGTTA 59.288 34.615 6.79 0.00 0.00 2.24
581 646 7.392393 ACCACGTTTTTAGGAATTGCTAGTTAT 59.608 33.333 6.79 0.00 0.00 1.89
582 647 8.241367 CCACGTTTTTAGGAATTGCTAGTTATT 58.759 33.333 6.79 0.00 0.00 1.40
583 648 9.061610 CACGTTTTTAGGAATTGCTAGTTATTG 57.938 33.333 6.79 0.83 0.00 1.90
584 649 9.005777 ACGTTTTTAGGAATTGCTAGTTATTGA 57.994 29.630 6.79 0.00 0.00 2.57
585 650 9.834628 CGTTTTTAGGAATTGCTAGTTATTGAA 57.165 29.630 6.79 0.00 0.00 2.69
607 672 8.553085 TGAAGATAAGATTAAGAGATGACCCA 57.447 34.615 0.00 0.00 0.00 4.51
608 673 9.163894 TGAAGATAAGATTAAGAGATGACCCAT 57.836 33.333 0.00 0.00 0.00 4.00
610 675 9.790344 AAGATAAGATTAAGAGATGACCCATTG 57.210 33.333 0.00 0.00 0.00 2.82
611 676 8.943085 AGATAAGATTAAGAGATGACCCATTGT 58.057 33.333 0.00 0.00 0.00 2.71
614 679 7.921041 AGATTAAGAGATGACCCATTGTAGA 57.079 36.000 0.00 0.00 0.00 2.59
615 680 7.731054 AGATTAAGAGATGACCCATTGTAGAC 58.269 38.462 0.00 0.00 0.00 2.59
616 681 7.566879 AGATTAAGAGATGACCCATTGTAGACT 59.433 37.037 0.00 0.00 0.00 3.24
617 682 7.496346 TTAAGAGATGACCCATTGTAGACTT 57.504 36.000 0.00 0.00 0.00 3.01
618 683 6.380079 AAGAGATGACCCATTGTAGACTTT 57.620 37.500 0.00 0.00 0.00 2.66
619 684 6.380079 AGAGATGACCCATTGTAGACTTTT 57.620 37.500 0.00 0.00 0.00 2.27
620 685 6.784031 AGAGATGACCCATTGTAGACTTTTT 58.216 36.000 0.00 0.00 0.00 1.94
684 749 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
685 750 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
686 751 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
687 752 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
688 753 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
693 758 2.580783 ACCATTGTACATGCCCTAACCT 59.419 45.455 0.00 0.00 0.00 3.50
1272 1340 2.032178 GGGTTGATAGATTTCTGCGCAC 59.968 50.000 5.66 0.00 0.00 5.34
1389 1457 7.550906 GTGGCTATTCTTGTTTCTTAGATCTGT 59.449 37.037 5.18 0.00 0.00 3.41
1390 1458 7.550551 TGGCTATTCTTGTTTCTTAGATCTGTG 59.449 37.037 5.18 0.00 0.00 3.66
1519 1617 5.279206 CCACTAAGAAGATCTGTGTGTCTGT 60.279 44.000 0.00 0.00 32.41 3.41
1542 1640 7.721402 TGTGTGGCTTTACTGATTTTTAATGT 58.279 30.769 0.00 0.00 0.00 2.71
1607 1705 4.338879 ACTATTTGCTGCTGGAATGTTCT 58.661 39.130 0.00 0.00 0.00 3.01
1689 1787 6.245408 TCATAGTTAAGTGGGTGATTTGCTT 58.755 36.000 0.00 0.00 0.00 3.91
1697 1795 3.057946 GTGGGTGATTTGCTTGAGAGTTC 60.058 47.826 0.00 0.00 0.00 3.01
1957 2056 2.679837 CTGTTCTGTGTGTTTCTGCTGT 59.320 45.455 0.00 0.00 0.00 4.40
1961 2060 1.665679 CTGTGTGTTTCTGCTGTCGTT 59.334 47.619 0.00 0.00 0.00 3.85
2031 2130 7.401484 AAACACGGCTTACAAACATAAATTG 57.599 32.000 0.00 0.00 0.00 2.32
2111 2211 9.973661 TTCTCACCTTGAATATATTGGAAGAAA 57.026 29.630 1.78 0.00 0.00 2.52
2189 2289 9.342308 TCATTGTTTAGAATTTGTCAGAACTCT 57.658 29.630 0.00 0.00 0.00 3.24
2190 2290 9.956720 CATTGTTTAGAATTTGTCAGAACTCTT 57.043 29.630 0.00 0.00 0.00 2.85
2245 2345 4.142600 GGCAATAGTCACACTGAATCCAAC 60.143 45.833 0.00 0.00 0.00 3.77
2291 2391 9.188588 CATAACAATAGCTTTTATGGCAAGATG 57.811 33.333 0.00 0.00 32.00 2.90
2295 2395 7.339212 ACAATAGCTTTTATGGCAAGATGTACA 59.661 33.333 0.00 0.00 0.00 2.90
2430 2530 1.172180 CCATGTGGGCGTGTCTTGTT 61.172 55.000 0.00 0.00 0.00 2.83
2459 2559 4.078537 TGTGATCCCATAAACTGTGGTTG 58.921 43.478 0.00 0.00 35.63 3.77
2543 2643 7.610305 TCCTGGATATTCACTCCAAAAGTAAAC 59.390 37.037 0.00 0.00 42.12 2.01
2610 2710 2.559668 ACCACAGTTTCCATTCATGCAG 59.440 45.455 0.00 0.00 0.00 4.41
2813 2913 8.834465 CATATCTATCCTTCAGACCTTTGTTTG 58.166 37.037 0.00 0.00 0.00 2.93
2814 2914 5.560724 TCTATCCTTCAGACCTTTGTTTGG 58.439 41.667 0.00 0.00 0.00 3.28
2815 2915 2.944129 TCCTTCAGACCTTTGTTTGGG 58.056 47.619 0.00 0.00 0.00 4.12
2816 2916 2.243736 TCCTTCAGACCTTTGTTTGGGT 59.756 45.455 0.00 0.00 38.70 4.51
2817 2917 3.031013 CCTTCAGACCTTTGTTTGGGTT 58.969 45.455 0.00 0.00 35.77 4.11
2818 2918 3.450817 CCTTCAGACCTTTGTTTGGGTTT 59.549 43.478 0.00 0.00 35.77 3.27
2819 2919 4.432712 CTTCAGACCTTTGTTTGGGTTTG 58.567 43.478 0.00 0.00 38.54 2.93
2820 2920 3.702792 TCAGACCTTTGTTTGGGTTTGA 58.297 40.909 0.00 0.00 42.05 2.69
2821 2921 4.285863 TCAGACCTTTGTTTGGGTTTGAT 58.714 39.130 0.00 0.00 40.31 2.57
2822 2922 4.714308 TCAGACCTTTGTTTGGGTTTGATT 59.286 37.500 0.00 0.00 40.31 2.57
2823 2923 5.049828 CAGACCTTTGTTTGGGTTTGATTC 58.950 41.667 0.00 0.00 39.23 2.52
2824 2924 4.714308 AGACCTTTGTTTGGGTTTGATTCA 59.286 37.500 0.00 0.00 35.77 2.57
2825 2925 5.366477 AGACCTTTGTTTGGGTTTGATTCAT 59.634 36.000 0.00 0.00 35.77 2.57
2826 2926 6.000246 ACCTTTGTTTGGGTTTGATTCATT 58.000 33.333 0.00 0.00 30.80 2.57
2827 2927 6.054941 ACCTTTGTTTGGGTTTGATTCATTC 58.945 36.000 0.00 0.00 30.80 2.67
2828 2928 6.054295 CCTTTGTTTGGGTTTGATTCATTCA 58.946 36.000 0.00 0.00 0.00 2.57
2829 2929 6.711645 CCTTTGTTTGGGTTTGATTCATTCAT 59.288 34.615 0.00 0.00 33.34 2.57
2830 2930 7.229106 CCTTTGTTTGGGTTTGATTCATTCATT 59.771 33.333 0.00 0.00 33.34 2.57
2836 2937 8.830201 TTGGGTTTGATTCATTCATTTTGTAG 57.170 30.769 0.00 0.00 33.34 2.74
2852 2953 8.122330 TCATTTTGTAGATGATGTTTGTATCGC 58.878 33.333 0.00 0.00 0.00 4.58
3095 3197 3.556543 AATGCCCGTGCGTTGCAAG 62.557 57.895 0.00 0.00 44.90 4.01
3211 3316 4.387437 CCTCCCTCTTCCTCACTCTCTATT 60.387 50.000 0.00 0.00 0.00 1.73
3397 3510 0.535335 AGCTCCAAGAATACGCGGAA 59.465 50.000 12.47 0.00 0.00 4.30
3798 3916 0.669318 TAGCGCAAAGGAGTGGAACG 60.669 55.000 11.47 0.00 45.86 3.95
3799 3917 2.251642 GCGCAAAGGAGTGGAACGT 61.252 57.895 0.30 0.00 45.86 3.99
3800 3918 0.947180 GCGCAAAGGAGTGGAACGTA 60.947 55.000 0.30 0.00 45.86 3.57
3801 3919 1.068474 CGCAAAGGAGTGGAACGTAG 58.932 55.000 0.00 0.00 45.86 3.51
3802 3920 0.796927 GCAAAGGAGTGGAACGTAGC 59.203 55.000 0.00 0.00 45.86 3.58
3803 3921 1.068474 CAAAGGAGTGGAACGTAGCG 58.932 55.000 0.00 0.00 45.86 4.26
3804 3922 0.669625 AAAGGAGTGGAACGTAGCGC 60.670 55.000 0.00 0.00 45.86 5.92
3805 3923 1.812686 AAGGAGTGGAACGTAGCGCA 61.813 55.000 11.47 0.00 45.86 6.09
3806 3924 1.373748 GGAGTGGAACGTAGCGCAA 60.374 57.895 11.47 0.00 45.86 4.85
3807 3925 0.947180 GGAGTGGAACGTAGCGCAAA 60.947 55.000 11.47 0.00 45.86 3.68
3808 3926 0.438830 GAGTGGAACGTAGCGCAAAG 59.561 55.000 11.47 1.66 45.86 2.77
3809 3927 0.949105 AGTGGAACGTAGCGCAAAGG 60.949 55.000 11.47 5.46 45.86 3.11
3810 3928 0.947180 GTGGAACGTAGCGCAAAGGA 60.947 55.000 11.47 0.00 0.00 3.36
3811 3929 0.669318 TGGAACGTAGCGCAAAGGAG 60.669 55.000 11.47 0.00 0.00 3.69
3812 3930 0.669625 GGAACGTAGCGCAAAGGAGT 60.670 55.000 11.47 0.00 0.00 3.85
3813 3931 0.438830 GAACGTAGCGCAAAGGAGTG 59.561 55.000 11.47 0.00 0.00 3.51
3814 3932 0.949105 AACGTAGCGCAAAGGAGTGG 60.949 55.000 11.47 0.00 0.00 4.00
3815 3933 1.080093 CGTAGCGCAAAGGAGTGGA 60.080 57.895 11.47 0.00 0.00 4.02
3816 3934 0.669318 CGTAGCGCAAAGGAGTGGAA 60.669 55.000 11.47 0.00 0.00 3.53
3817 3935 1.739067 GTAGCGCAAAGGAGTGGAAT 58.261 50.000 11.47 0.00 0.00 3.01
3970 4102 2.741092 GAGGACGGCTGGTTCACA 59.259 61.111 0.00 0.00 0.00 3.58
4157 4289 5.250679 GTGATCTCCACAAGCTGTAGGCT 62.251 52.174 0.00 0.00 44.97 4.58
4305 4462 2.124236 CCCCGTCGCTACTCCTCT 60.124 66.667 0.00 0.00 0.00 3.69
4482 4651 0.780494 TCCTCCGATCCCCTATCCCT 60.780 60.000 0.00 0.00 0.00 4.20
4563 4738 1.562575 CTAAACAAACGCGGGCGAGT 61.563 55.000 20.98 11.80 42.83 4.18
4672 4847 8.902806 TGTCGCTCTAAATAAATGGATTCAATT 58.097 29.630 0.00 0.00 0.00 2.32
5007 5954 6.492274 AGGGGTAAATAAACCGGTGAATAAA 58.508 36.000 8.52 0.00 40.73 1.40
5217 6165 9.811995 TGTTAGTAAAGTATGATGCGTCTTTAT 57.188 29.630 7.58 0.00 35.70 1.40
5343 6291 0.101399 TTGCGTGCACGTTTGGAAAT 59.899 45.000 36.80 0.00 42.22 2.17
5576 6920 8.809468 AGTTGTCTAGTATGATCTCTGTTGTA 57.191 34.615 0.00 0.00 0.00 2.41
5615 6959 7.201679 GCATATGACTGGATAATTACCATGAGC 60.202 40.741 6.97 0.00 36.79 4.26
5634 6978 6.757897 TGAGCTATTATGTCTTTGGTTTGG 57.242 37.500 0.00 0.00 0.00 3.28
5741 7085 6.057533 TCAGCTGTATCATTATGAAGTTGGG 58.942 40.000 14.67 0.00 0.00 4.12
5766 7110 7.862873 GGTTAGTTCATTTCACTGAGGAAAAAG 59.137 37.037 0.00 0.00 39.94 2.27
5770 7114 6.076981 TCATTTCACTGAGGAAAAAGAAGC 57.923 37.500 0.00 0.00 39.94 3.86
5777 7121 8.918202 TCACTGAGGAAAAAGAAGCTTTATTA 57.082 30.769 0.00 0.00 0.00 0.98
5805 7149 9.060347 TGCATTGATTCTAGTTGATTTATCCTC 57.940 33.333 0.00 0.00 0.00 3.71
6254 7598 8.522830 CCTTTTCATTGCTGTTTAGGATTCTTA 58.477 33.333 0.00 0.00 0.00 2.10
6272 7616 9.474920 GGATTCTTATCACTGTTAGAAGATGAG 57.525 37.037 0.44 0.00 30.87 2.90
6307 7651 7.004086 TGTTCCTTTTATATAGGCCAATCAGG 58.996 38.462 5.01 0.00 41.84 3.86
6323 7667 6.710295 GCCAATCAGGGAACTTACAAAATTTT 59.290 34.615 0.00 0.00 40.21 1.82
6505 7849 0.406361 AGACCGGTGGCCCATTTAAA 59.594 50.000 14.63 0.00 0.00 1.52
6615 7959 5.067674 GGCAGACAATCATAGCCATTTGTTA 59.932 40.000 0.00 0.00 44.59 2.41
6616 7960 6.405731 GGCAGACAATCATAGCCATTTGTTAA 60.406 38.462 0.00 0.00 44.59 2.01
6647 7991 2.686405 ACAATGCAGCATACTCATGTGG 59.314 45.455 8.75 0.00 34.40 4.17
6731 8082 4.583871 GGCATATAAGATCTCCAGTTGGG 58.416 47.826 0.00 0.00 35.41 4.12
6755 8106 6.650120 GGACAAGAGTACCAATCCTTATTCA 58.350 40.000 0.00 0.00 0.00 2.57
6915 8266 9.793259 TTATTTGTTGTAATTGGGGCAATTTTA 57.207 25.926 0.00 0.00 40.60 1.52
7124 8596 3.135056 CTACGCCTCACCTACGCCC 62.135 68.421 0.00 0.00 0.00 6.13
7168 8643 2.186826 GCGTGAACTTGCCACTGGT 61.187 57.895 0.00 0.00 32.64 4.00
7310 8809 2.328099 GCAAGCTTAGCGGCACAGT 61.328 57.895 16.51 0.00 34.80 3.55
7313 8812 0.875059 AAGCTTAGCGGCACAGTTTC 59.125 50.000 0.00 0.00 34.17 2.78
7332 8831 0.114168 CCCCCATGACCCAGTTTTCA 59.886 55.000 0.00 0.00 0.00 2.69
7333 8832 1.256812 CCCCATGACCCAGTTTTCAC 58.743 55.000 0.00 0.00 0.00 3.18
7334 8833 1.203050 CCCCATGACCCAGTTTTCACT 60.203 52.381 0.00 0.00 0.00 3.41
7335 8834 2.162681 CCCATGACCCAGTTTTCACTC 58.837 52.381 0.00 0.00 0.00 3.51
7336 8835 2.224867 CCCATGACCCAGTTTTCACTCT 60.225 50.000 0.00 0.00 0.00 3.24
7337 8836 3.009033 CCCATGACCCAGTTTTCACTCTA 59.991 47.826 0.00 0.00 0.00 2.43
7383 8882 3.390967 TCCACTTCCATCTTCAACTGTCA 59.609 43.478 0.00 0.00 0.00 3.58
7404 8903 1.915078 CGGTGAGCCCTTGGGATCTT 61.915 60.000 22.46 0.00 0.00 2.40
7499 8998 2.791347 TAGGAATAGTTTTGGCGGCA 57.209 45.000 7.97 7.97 0.00 5.69
7501 9000 1.173913 GGAATAGTTTTGGCGGCAGT 58.826 50.000 12.87 0.92 0.00 4.40
7509 9008 4.892965 TGGCGGCAGTGTGGCTTT 62.893 61.111 7.97 0.00 41.25 3.51
7516 9015 1.530013 GCAGTGTGGCTTTGATGGCT 61.530 55.000 0.00 0.00 0.00 4.75
7517 9016 1.825090 CAGTGTGGCTTTGATGGCTA 58.175 50.000 0.00 0.00 0.00 3.93
7518 9017 2.372264 CAGTGTGGCTTTGATGGCTAT 58.628 47.619 0.00 0.00 0.00 2.97
7544 11768 3.260269 TCTGGAAGAGGTGGAAAGAGA 57.740 47.619 0.00 0.00 38.67 3.10
7553 11777 1.611936 GGTGGAAAGAGAAGAGGTGCC 60.612 57.143 0.00 0.00 0.00 5.01
7572 11796 0.745845 CTGTTCGGAGGCATCCCTTG 60.746 60.000 12.67 0.00 43.12 3.61
7573 11797 1.198094 TGTTCGGAGGCATCCCTTGA 61.198 55.000 12.67 0.00 43.12 3.02
7575 11799 0.035439 TTCGGAGGCATCCCTTGAAC 60.035 55.000 12.67 0.00 43.12 3.18
7577 11801 0.107017 CGGAGGCATCCCTTGAACAT 60.107 55.000 12.67 0.00 43.12 2.71
7578 11802 1.396653 GGAGGCATCCCTTGAACATG 58.603 55.000 5.99 0.00 43.12 3.21
7579 11803 1.341383 GGAGGCATCCCTTGAACATGT 60.341 52.381 5.99 0.00 43.12 3.21
7581 11805 0.174162 GGCATCCCTTGAACATGTGC 59.826 55.000 0.00 0.00 0.00 4.57
7582 11806 0.174162 GCATCCCTTGAACATGTGCC 59.826 55.000 0.00 0.00 0.00 5.01
7584 11808 1.475280 CATCCCTTGAACATGTGCCTG 59.525 52.381 0.00 0.00 0.00 4.85
7586 11810 1.171308 CCCTTGAACATGTGCCTGAG 58.829 55.000 0.00 0.00 0.00 3.35
7587 11811 1.271543 CCCTTGAACATGTGCCTGAGA 60.272 52.381 0.00 0.00 0.00 3.27
7588 11812 1.808945 CCTTGAACATGTGCCTGAGAC 59.191 52.381 0.00 0.00 0.00 3.36
7591 11815 1.071605 GAACATGTGCCTGAGACGTC 58.928 55.000 7.70 7.70 0.00 4.34
7618 12178 3.324207 GGGTTGGACACACCTCTTC 57.676 57.895 0.00 0.00 39.86 2.87
7619 12179 0.472471 GGGTTGGACACACCTCTTCA 59.528 55.000 0.00 0.00 39.86 3.02
7622 12182 2.213499 GTTGGACACACCTCTTCACTG 58.787 52.381 0.00 0.00 39.86 3.66
7678 12252 9.927081 AATTTCTAACACTCCTCCATATTCAAT 57.073 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.058016 CAGCTTTCCGTCACATTCAATGT 60.058 43.478 0.00 0.00 46.22 2.71
9 10 3.058016 ACAGCTTTCCGTCACATTCAATG 60.058 43.478 0.00 0.00 0.00 2.82
10 11 3.149196 ACAGCTTTCCGTCACATTCAAT 58.851 40.909 0.00 0.00 0.00 2.57
11 12 2.548057 GACAGCTTTCCGTCACATTCAA 59.452 45.455 0.00 0.00 32.24 2.69
12 13 2.143122 GACAGCTTTCCGTCACATTCA 58.857 47.619 0.00 0.00 32.24 2.57
13 14 2.417719 AGACAGCTTTCCGTCACATTC 58.582 47.619 4.89 0.00 34.48 2.67
14 15 2.549754 CAAGACAGCTTTCCGTCACATT 59.450 45.455 4.89 0.00 34.48 2.71
15 16 2.146342 CAAGACAGCTTTCCGTCACAT 58.854 47.619 4.89 0.00 34.48 3.21
16 17 1.138069 TCAAGACAGCTTTCCGTCACA 59.862 47.619 4.89 0.00 34.48 3.58
17 18 1.865865 TCAAGACAGCTTTCCGTCAC 58.134 50.000 4.89 0.00 34.48 3.67
18 19 2.037121 TCATCAAGACAGCTTTCCGTCA 59.963 45.455 4.89 0.00 34.48 4.35
19 20 2.688507 TCATCAAGACAGCTTTCCGTC 58.311 47.619 0.00 0.00 30.14 4.79
20 21 2.839486 TCATCAAGACAGCTTTCCGT 57.161 45.000 0.00 0.00 30.14 4.69
21 22 4.437239 AGTATCATCAAGACAGCTTTCCG 58.563 43.478 0.00 0.00 30.14 4.30
22 23 6.112058 AGAAGTATCATCAAGACAGCTTTCC 58.888 40.000 0.00 0.00 30.14 3.13
23 24 7.042791 GCTAGAAGTATCATCAAGACAGCTTTC 60.043 40.741 0.00 0.00 30.14 2.62
24 25 6.760770 GCTAGAAGTATCATCAAGACAGCTTT 59.239 38.462 0.00 0.00 30.14 3.51
25 26 6.098124 AGCTAGAAGTATCATCAAGACAGCTT 59.902 38.462 0.00 0.00 30.71 3.74
26 27 5.598005 AGCTAGAAGTATCATCAAGACAGCT 59.402 40.000 0.00 0.00 0.00 4.24
27 28 5.841810 AGCTAGAAGTATCATCAAGACAGC 58.158 41.667 0.00 0.00 0.00 4.40
28 29 7.715657 AGAAGCTAGAAGTATCATCAAGACAG 58.284 38.462 0.00 0.00 0.00 3.51
29 30 7.652524 AGAAGCTAGAAGTATCATCAAGACA 57.347 36.000 0.00 0.00 0.00 3.41
30 31 8.194104 TCAAGAAGCTAGAAGTATCATCAAGAC 58.806 37.037 0.00 0.00 0.00 3.01
31 32 8.298729 TCAAGAAGCTAGAAGTATCATCAAGA 57.701 34.615 0.00 0.00 0.00 3.02
32 33 8.980610 CATCAAGAAGCTAGAAGTATCATCAAG 58.019 37.037 0.00 0.00 0.00 3.02
33 34 8.699130 TCATCAAGAAGCTAGAAGTATCATCAA 58.301 33.333 0.00 0.00 0.00 2.57
34 35 8.140628 GTCATCAAGAAGCTAGAAGTATCATCA 58.859 37.037 0.00 0.00 0.00 3.07
35 36 7.598493 GGTCATCAAGAAGCTAGAAGTATCATC 59.402 40.741 0.00 0.00 0.00 2.92
36 37 7.070447 TGGTCATCAAGAAGCTAGAAGTATCAT 59.930 37.037 0.00 0.00 0.00 2.45
37 38 6.381133 TGGTCATCAAGAAGCTAGAAGTATCA 59.619 38.462 0.00 0.00 0.00 2.15
38 39 6.810911 TGGTCATCAAGAAGCTAGAAGTATC 58.189 40.000 0.00 0.00 0.00 2.24
39 40 6.685116 GCTGGTCATCAAGAAGCTAGAAGTAT 60.685 42.308 0.00 0.00 0.00 2.12
40 41 5.394663 GCTGGTCATCAAGAAGCTAGAAGTA 60.395 44.000 0.00 0.00 0.00 2.24
41 42 4.622695 GCTGGTCATCAAGAAGCTAGAAGT 60.623 45.833 0.00 0.00 0.00 3.01
42 43 3.870419 GCTGGTCATCAAGAAGCTAGAAG 59.130 47.826 0.00 0.00 0.00 2.85
43 44 3.369892 GGCTGGTCATCAAGAAGCTAGAA 60.370 47.826 0.00 0.00 34.29 2.10
44 45 2.169352 GGCTGGTCATCAAGAAGCTAGA 59.831 50.000 0.00 0.00 34.29 2.43
45 46 2.170187 AGGCTGGTCATCAAGAAGCTAG 59.830 50.000 0.00 0.00 34.29 3.42
46 47 2.093288 CAGGCTGGTCATCAAGAAGCTA 60.093 50.000 6.61 0.00 34.29 3.32
47 48 0.990374 AGGCTGGTCATCAAGAAGCT 59.010 50.000 0.00 0.00 34.29 3.74
48 49 1.093159 CAGGCTGGTCATCAAGAAGC 58.907 55.000 6.61 0.00 0.00 3.86
49 50 2.486472 ACAGGCTGGTCATCAAGAAG 57.514 50.000 20.34 0.00 0.00 2.85
50 51 2.507484 CAACAGGCTGGTCATCAAGAA 58.493 47.619 20.34 0.00 0.00 2.52
51 52 1.271543 CCAACAGGCTGGTCATCAAGA 60.272 52.381 20.34 0.00 0.00 3.02
52 53 1.171308 CCAACAGGCTGGTCATCAAG 58.829 55.000 20.34 0.00 0.00 3.02
53 54 0.895100 GCCAACAGGCTGGTCATCAA 60.895 55.000 20.34 0.00 45.21 2.57
54 55 1.303561 GCCAACAGGCTGGTCATCA 60.304 57.895 20.34 0.00 45.21 3.07
55 56 3.595819 GCCAACAGGCTGGTCATC 58.404 61.111 20.34 0.00 45.21 2.92
70 71 8.891141 TAAAAGCACTTTTGGAGCATTCAGCC 62.891 42.308 16.66 0.00 42.61 4.85
71 72 1.271656 AGCACTTTTGGAGCATTCAGC 59.728 47.619 0.00 0.00 46.19 4.26
72 73 3.655276 AAGCACTTTTGGAGCATTCAG 57.345 42.857 0.00 0.00 0.00 3.02
73 74 4.405116 AAAAGCACTTTTGGAGCATTCA 57.595 36.364 7.55 0.00 40.84 2.57
74 75 6.646240 TCATTAAAAGCACTTTTGGAGCATTC 59.354 34.615 16.66 0.00 42.18 2.67
75 76 6.523840 TCATTAAAAGCACTTTTGGAGCATT 58.476 32.000 16.66 0.00 42.18 3.56
76 77 6.100404 TCATTAAAAGCACTTTTGGAGCAT 57.900 33.333 16.66 1.25 42.18 3.79
77 78 5.528043 TCATTAAAAGCACTTTTGGAGCA 57.472 34.783 16.66 0.00 42.18 4.26
78 79 8.707938 ATATTCATTAAAAGCACTTTTGGAGC 57.292 30.769 16.66 0.00 42.18 4.70
96 97 9.294614 GGGAAAATCAGAGAGCTTTATATTCAT 57.705 33.333 0.00 0.00 0.00 2.57
97 98 8.497745 AGGGAAAATCAGAGAGCTTTATATTCA 58.502 33.333 0.00 0.00 0.00 2.57
98 99 8.782144 CAGGGAAAATCAGAGAGCTTTATATTC 58.218 37.037 0.00 0.00 0.00 1.75
99 100 8.497745 TCAGGGAAAATCAGAGAGCTTTATATT 58.502 33.333 0.00 0.00 0.00 1.28
100 101 8.038862 TCAGGGAAAATCAGAGAGCTTTATAT 57.961 34.615 0.00 0.00 0.00 0.86
101 102 7.437713 TCAGGGAAAATCAGAGAGCTTTATA 57.562 36.000 0.00 0.00 0.00 0.98
102 103 6.319048 TCAGGGAAAATCAGAGAGCTTTAT 57.681 37.500 0.00 0.00 0.00 1.40
103 104 5.762179 TCAGGGAAAATCAGAGAGCTTTA 57.238 39.130 0.00 0.00 0.00 1.85
104 105 4.647564 TCAGGGAAAATCAGAGAGCTTT 57.352 40.909 0.00 0.00 0.00 3.51
105 106 4.647564 TTCAGGGAAAATCAGAGAGCTT 57.352 40.909 0.00 0.00 0.00 3.74
106 107 4.647564 TTTCAGGGAAAATCAGAGAGCT 57.352 40.909 0.00 0.00 0.00 4.09
107 108 5.712152 TTTTTCAGGGAAAATCAGAGAGC 57.288 39.130 5.11 0.00 40.50 4.09
133 134 9.710900 CAAGTGCTCCAATATCATATTGTACTA 57.289 33.333 15.01 0.00 0.00 1.82
134 135 7.663081 CCAAGTGCTCCAATATCATATTGTACT 59.337 37.037 15.01 10.72 0.00 2.73
135 136 7.661437 TCCAAGTGCTCCAATATCATATTGTAC 59.339 37.037 15.01 9.03 0.00 2.90
136 137 7.661437 GTCCAAGTGCTCCAATATCATATTGTA 59.339 37.037 15.01 0.00 0.00 2.41
137 138 6.488006 GTCCAAGTGCTCCAATATCATATTGT 59.512 38.462 15.01 0.00 0.00 2.71
138 139 6.487668 TGTCCAAGTGCTCCAATATCATATTG 59.512 38.462 10.12 10.12 0.00 1.90
139 140 6.604171 TGTCCAAGTGCTCCAATATCATATT 58.396 36.000 0.00 0.00 0.00 1.28
140 141 6.191657 TGTCCAAGTGCTCCAATATCATAT 57.808 37.500 0.00 0.00 0.00 1.78
141 142 5.628797 TGTCCAAGTGCTCCAATATCATA 57.371 39.130 0.00 0.00 0.00 2.15
142 143 4.508551 TGTCCAAGTGCTCCAATATCAT 57.491 40.909 0.00 0.00 0.00 2.45
143 144 3.998913 TGTCCAAGTGCTCCAATATCA 57.001 42.857 0.00 0.00 0.00 2.15
144 145 4.454678 TGATGTCCAAGTGCTCCAATATC 58.545 43.478 0.00 0.00 0.00 1.63
145 146 4.508551 TGATGTCCAAGTGCTCCAATAT 57.491 40.909 0.00 0.00 0.00 1.28
146 147 3.998913 TGATGTCCAAGTGCTCCAATA 57.001 42.857 0.00 0.00 0.00 1.90
147 148 2.885135 TGATGTCCAAGTGCTCCAAT 57.115 45.000 0.00 0.00 0.00 3.16
148 149 2.507484 CTTGATGTCCAAGTGCTCCAA 58.493 47.619 0.00 0.00 45.52 3.53
149 150 2.189594 CTTGATGTCCAAGTGCTCCA 57.810 50.000 0.00 0.00 45.52 3.86
164 165 1.388547 GCCACGCATATTTCCCTTGA 58.611 50.000 0.00 0.00 0.00 3.02
246 310 2.976356 GCCGTAGTTCCCGTCCTT 59.024 61.111 0.00 0.00 0.00 3.36
321 386 2.034066 ATCTTGTGCACGGTGGGG 59.966 61.111 13.13 0.00 0.00 4.96
392 457 2.581216 AGTACGTCAGGACTCAGGAA 57.419 50.000 0.00 0.00 0.00 3.36
399 464 2.357323 GCCCTTAGTAGTACGTCAGGAC 59.643 54.545 14.03 2.68 0.00 3.85
400 465 2.025981 TGCCCTTAGTAGTACGTCAGGA 60.026 50.000 14.03 0.00 0.00 3.86
401 466 2.372264 TGCCCTTAGTAGTACGTCAGG 58.628 52.381 0.00 7.98 0.00 3.86
402 467 3.380637 ACATGCCCTTAGTAGTACGTCAG 59.619 47.826 0.00 0.00 0.00 3.51
403 468 3.359033 ACATGCCCTTAGTAGTACGTCA 58.641 45.455 0.00 0.00 0.00 4.35
404 469 4.336433 TGTACATGCCCTTAGTAGTACGTC 59.664 45.833 0.00 0.00 35.75 4.34
405 470 4.272489 TGTACATGCCCTTAGTAGTACGT 58.728 43.478 0.00 0.00 35.75 3.57
407 472 5.989777 CCATTGTACATGCCCTTAGTAGTAC 59.010 44.000 0.00 0.00 34.11 2.73
409 474 4.473559 ACCATTGTACATGCCCTTAGTAGT 59.526 41.667 0.00 0.00 0.00 2.73
410 475 4.816385 CACCATTGTACATGCCCTTAGTAG 59.184 45.833 0.00 0.00 0.00 2.57
412 477 3.620488 CACCATTGTACATGCCCTTAGT 58.380 45.455 0.00 0.00 0.00 2.24
413 478 2.358898 GCACCATTGTACATGCCCTTAG 59.641 50.000 7.77 0.00 31.71 2.18
414 479 2.025416 AGCACCATTGTACATGCCCTTA 60.025 45.455 14.08 0.00 38.92 2.69
415 480 1.185315 GCACCATTGTACATGCCCTT 58.815 50.000 7.77 0.00 31.71 3.95
416 481 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
417 482 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
418 483 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
419 484 5.760253 ACTAAGATAGCACCATTGTACATGC 59.240 40.000 10.53 10.53 38.39 4.06
420 485 8.144478 ACTACTAAGATAGCACCATTGTACATG 58.856 37.037 0.00 0.00 0.00 3.21
421 486 8.144478 CACTACTAAGATAGCACCATTGTACAT 58.856 37.037 0.00 0.00 0.00 2.29
422 487 7.489160 CACTACTAAGATAGCACCATTGTACA 58.511 38.462 0.00 0.00 0.00 2.90
423 488 6.421202 GCACTACTAAGATAGCACCATTGTAC 59.579 42.308 0.00 0.00 0.00 2.90
424 489 6.462487 GGCACTACTAAGATAGCACCATTGTA 60.462 42.308 0.00 0.00 0.00 2.41
425 490 5.360591 GCACTACTAAGATAGCACCATTGT 58.639 41.667 0.00 0.00 0.00 2.71
426 491 4.752101 GGCACTACTAAGATAGCACCATTG 59.248 45.833 0.00 0.00 0.00 2.82
427 492 4.408921 TGGCACTACTAAGATAGCACCATT 59.591 41.667 0.00 0.00 29.71 3.16
428 493 3.967326 TGGCACTACTAAGATAGCACCAT 59.033 43.478 0.00 0.00 29.71 3.55
429 494 3.132289 GTGGCACTACTAAGATAGCACCA 59.868 47.826 11.13 0.00 31.35 4.17
430 495 3.718815 GTGGCACTACTAAGATAGCACC 58.281 50.000 11.13 0.00 0.00 5.01
431 496 3.181489 ACGTGGCACTACTAAGATAGCAC 60.181 47.826 16.72 0.00 0.00 4.40
432 497 3.021695 ACGTGGCACTACTAAGATAGCA 58.978 45.455 16.72 0.00 0.00 3.49
433 498 3.712091 ACGTGGCACTACTAAGATAGC 57.288 47.619 16.72 0.00 0.00 2.97
434 499 5.061853 TCCTACGTGGCACTACTAAGATAG 58.938 45.833 16.72 0.00 35.26 2.08
435 500 5.039920 TCCTACGTGGCACTACTAAGATA 57.960 43.478 16.72 0.00 35.26 1.98
436 501 3.894759 TCCTACGTGGCACTACTAAGAT 58.105 45.455 16.72 0.00 35.26 2.40
437 502 3.354948 TCCTACGTGGCACTACTAAGA 57.645 47.619 16.72 2.12 35.26 2.10
438 503 3.630769 TGATCCTACGTGGCACTACTAAG 59.369 47.826 16.72 0.92 35.26 2.18
439 504 3.623703 TGATCCTACGTGGCACTACTAA 58.376 45.455 16.72 0.00 35.26 2.24
440 505 3.286329 TGATCCTACGTGGCACTACTA 57.714 47.619 16.72 1.46 35.26 1.82
441 506 2.139323 TGATCCTACGTGGCACTACT 57.861 50.000 16.72 0.21 35.26 2.57
442 507 2.953466 TTGATCCTACGTGGCACTAC 57.047 50.000 16.72 0.05 35.26 2.73
443 508 3.028130 TCATTGATCCTACGTGGCACTA 58.972 45.455 16.72 6.37 35.26 2.74
444 509 1.831106 TCATTGATCCTACGTGGCACT 59.169 47.619 16.72 5.47 35.26 4.40
445 510 2.309528 TCATTGATCCTACGTGGCAC 57.690 50.000 7.79 7.79 35.26 5.01
446 511 2.433970 TCATCATTGATCCTACGTGGCA 59.566 45.455 0.00 0.00 35.26 4.92
447 512 3.062763 CTCATCATTGATCCTACGTGGC 58.937 50.000 0.00 0.00 35.26 5.01
448 513 3.070159 ACCTCATCATTGATCCTACGTGG 59.930 47.826 0.00 0.00 37.10 4.94
449 514 4.053983 CACCTCATCATTGATCCTACGTG 58.946 47.826 0.00 0.00 0.00 4.49
450 515 3.070159 CCACCTCATCATTGATCCTACGT 59.930 47.826 0.00 0.00 0.00 3.57
451 516 3.321968 TCCACCTCATCATTGATCCTACG 59.678 47.826 0.00 0.00 0.00 3.51
452 517 4.262808 CCTCCACCTCATCATTGATCCTAC 60.263 50.000 0.00 0.00 0.00 3.18
453 518 3.906218 CCTCCACCTCATCATTGATCCTA 59.094 47.826 0.00 0.00 0.00 2.94
454 519 2.709934 CCTCCACCTCATCATTGATCCT 59.290 50.000 0.00 0.00 0.00 3.24
455 520 2.707791 TCCTCCACCTCATCATTGATCC 59.292 50.000 0.00 0.00 0.00 3.36
456 521 3.645212 TCTCCTCCACCTCATCATTGATC 59.355 47.826 0.00 0.00 0.00 2.92
457 522 3.647113 CTCTCCTCCACCTCATCATTGAT 59.353 47.826 0.00 0.00 0.00 2.57
458 523 3.036819 CTCTCCTCCACCTCATCATTGA 58.963 50.000 0.00 0.00 0.00 2.57
459 524 3.036819 TCTCTCCTCCACCTCATCATTG 58.963 50.000 0.00 0.00 0.00 2.82
460 525 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
461 526 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
462 527 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
463 528 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
464 529 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
465 530 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
466 531 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
467 532 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
468 533 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
469 534 5.923733 TTTATGAGTTCTCTCTCCTCCAC 57.076 43.478 1.53 0.00 40.98 4.02
470 535 6.935240 TTTTTATGAGTTCTCTCTCCTCCA 57.065 37.500 1.53 0.00 40.98 3.86
494 559 9.574516 TCTCTTAAATAAAAGAAGACAAGCCTT 57.425 29.630 0.00 0.00 35.14 4.35
495 560 9.574516 TTCTCTTAAATAAAAGAAGACAAGCCT 57.425 29.630 0.00 0.00 35.14 4.58
496 561 9.833182 CTTCTCTTAAATAAAAGAAGACAAGCC 57.167 33.333 9.63 0.00 44.81 4.35
527 592 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
528 593 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
529 594 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
530 595 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
531 596 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
532 597 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
533 598 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
534 599 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
535 600 5.521735 GTGGTGAGACATATTGTGCTAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
536 601 5.419542 GTGGTGAGACATATTGTGCTAAGA 58.580 41.667 0.00 0.00 0.00 2.10
537 602 4.268644 CGTGGTGAGACATATTGTGCTAAG 59.731 45.833 0.00 0.00 0.00 2.18
538 603 4.180817 CGTGGTGAGACATATTGTGCTAA 58.819 43.478 0.00 0.00 0.00 3.09
539 604 3.194755 ACGTGGTGAGACATATTGTGCTA 59.805 43.478 0.00 0.00 0.00 3.49
540 605 2.028112 ACGTGGTGAGACATATTGTGCT 60.028 45.455 0.00 0.00 0.00 4.40
541 606 2.346803 ACGTGGTGAGACATATTGTGC 58.653 47.619 0.00 0.00 0.00 4.57
542 607 5.356882 AAAACGTGGTGAGACATATTGTG 57.643 39.130 0.00 0.00 0.00 3.33
543 608 6.148811 CCTAAAAACGTGGTGAGACATATTGT 59.851 38.462 0.00 0.00 0.00 2.71
544 609 6.370442 TCCTAAAAACGTGGTGAGACATATTG 59.630 38.462 0.00 0.00 0.00 1.90
545 610 6.469410 TCCTAAAAACGTGGTGAGACATATT 58.531 36.000 0.00 0.00 0.00 1.28
546 611 6.045072 TCCTAAAAACGTGGTGAGACATAT 57.955 37.500 0.00 0.00 0.00 1.78
547 612 5.471556 TCCTAAAAACGTGGTGAGACATA 57.528 39.130 0.00 0.00 0.00 2.29
548 613 4.345859 TCCTAAAAACGTGGTGAGACAT 57.654 40.909 0.00 0.00 0.00 3.06
549 614 3.823281 TCCTAAAAACGTGGTGAGACA 57.177 42.857 0.00 0.00 0.00 3.41
550 615 5.449304 CAATTCCTAAAAACGTGGTGAGAC 58.551 41.667 0.00 0.00 0.00 3.36
551 616 4.023536 GCAATTCCTAAAAACGTGGTGAGA 60.024 41.667 0.00 0.00 0.00 3.27
552 617 4.023193 AGCAATTCCTAAAAACGTGGTGAG 60.023 41.667 0.00 0.00 0.00 3.51
553 618 3.886505 AGCAATTCCTAAAAACGTGGTGA 59.113 39.130 0.00 0.00 0.00 4.02
554 619 4.237349 AGCAATTCCTAAAAACGTGGTG 57.763 40.909 0.00 0.00 0.00 4.17
555 620 5.067954 ACTAGCAATTCCTAAAAACGTGGT 58.932 37.500 0.00 0.00 0.00 4.16
556 621 5.622770 ACTAGCAATTCCTAAAAACGTGG 57.377 39.130 0.00 0.00 0.00 4.94
557 622 9.061610 CAATAACTAGCAATTCCTAAAAACGTG 57.938 33.333 0.00 0.00 0.00 4.49
558 623 9.005777 TCAATAACTAGCAATTCCTAAAAACGT 57.994 29.630 0.00 0.00 0.00 3.99
559 624 9.834628 TTCAATAACTAGCAATTCCTAAAAACG 57.165 29.630 0.00 0.00 0.00 3.60
581 646 8.992349 TGGGTCATCTCTTAATCTTATCTTCAA 58.008 33.333 0.00 0.00 0.00 2.69
582 647 8.553085 TGGGTCATCTCTTAATCTTATCTTCA 57.447 34.615 0.00 0.00 0.00 3.02
584 649 9.790344 CAATGGGTCATCTCTTAATCTTATCTT 57.210 33.333 0.00 0.00 0.00 2.40
585 650 8.943085 ACAATGGGTCATCTCTTAATCTTATCT 58.057 33.333 0.00 0.00 0.00 1.98
588 653 9.434275 TCTACAATGGGTCATCTCTTAATCTTA 57.566 33.333 0.00 0.00 0.00 2.10
589 654 8.207545 GTCTACAATGGGTCATCTCTTAATCTT 58.792 37.037 0.00 0.00 0.00 2.40
590 655 7.566879 AGTCTACAATGGGTCATCTCTTAATCT 59.433 37.037 0.00 0.00 0.00 2.40
591 656 7.731054 AGTCTACAATGGGTCATCTCTTAATC 58.269 38.462 0.00 0.00 0.00 1.75
592 657 7.682787 AGTCTACAATGGGTCATCTCTTAAT 57.317 36.000 0.00 0.00 0.00 1.40
593 658 7.496346 AAGTCTACAATGGGTCATCTCTTAA 57.504 36.000 0.00 0.00 0.00 1.85
594 659 7.496346 AAAGTCTACAATGGGTCATCTCTTA 57.504 36.000 0.00 0.00 0.00 2.10
595 660 6.380079 AAAGTCTACAATGGGTCATCTCTT 57.620 37.500 0.00 0.00 0.00 2.85
596 661 6.380079 AAAAGTCTACAATGGGTCATCTCT 57.620 37.500 0.00 0.00 0.00 3.10
658 723 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
659 724 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
660 725 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
661 726 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
662 727 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
663 728 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
664 729 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
665 730 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
666 731 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
667 732 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
668 733 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
669 734 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
670 735 3.130340 GGTTAGGGCATGTACAATGGTTG 59.870 47.826 0.00 0.00 0.00 3.77
671 736 3.011257 AGGTTAGGGCATGTACAATGGTT 59.989 43.478 0.00 0.00 0.00 3.67
672 737 2.580783 AGGTTAGGGCATGTACAATGGT 59.419 45.455 0.00 0.00 0.00 3.55
673 738 3.297134 AGGTTAGGGCATGTACAATGG 57.703 47.619 0.00 0.00 0.00 3.16
674 739 4.016444 ACAAGGTTAGGGCATGTACAATG 58.984 43.478 0.00 0.12 0.00 2.82
675 740 4.316025 ACAAGGTTAGGGCATGTACAAT 57.684 40.909 0.00 0.00 0.00 2.71
676 741 3.799432 ACAAGGTTAGGGCATGTACAA 57.201 42.857 0.00 0.00 0.00 2.41
677 742 3.799432 AACAAGGTTAGGGCATGTACA 57.201 42.857 0.00 0.00 0.00 2.90
678 743 3.824443 ACAAACAAGGTTAGGGCATGTAC 59.176 43.478 0.00 0.00 0.00 2.90
679 744 3.823873 CACAAACAAGGTTAGGGCATGTA 59.176 43.478 0.00 0.00 0.00 2.29
680 745 2.627699 CACAAACAAGGTTAGGGCATGT 59.372 45.455 0.00 0.00 0.00 3.21
681 746 2.610232 GCACAAACAAGGTTAGGGCATG 60.610 50.000 0.00 0.00 0.00 4.06
682 747 1.618343 GCACAAACAAGGTTAGGGCAT 59.382 47.619 0.00 0.00 0.00 4.40
683 748 1.036707 GCACAAACAAGGTTAGGGCA 58.963 50.000 0.00 0.00 0.00 5.36
684 749 0.317160 GGCACAAACAAGGTTAGGGC 59.683 55.000 0.00 0.00 0.00 5.19
685 750 1.698506 TGGCACAAACAAGGTTAGGG 58.301 50.000 0.00 0.00 31.92 3.53
693 758 1.080995 GCGCAAGTTGGCACAAACAA 61.081 50.000 0.30 0.00 41.27 2.83
1272 1340 6.459024 CGTCTTACTCAGATCTAACCAAGAGG 60.459 46.154 9.55 10.60 37.74 3.69
1389 1457 4.067192 CTCATGATGTGACAGTTTCCACA 58.933 43.478 0.00 0.00 45.85 4.17
1390 1458 4.067896 ACTCATGATGTGACAGTTTCCAC 58.932 43.478 0.00 0.00 32.22 4.02
1519 1617 7.721402 ACACATTAAAAATCAGTAAAGCCACA 58.279 30.769 0.00 0.00 0.00 4.17
1542 1640 8.791327 TCAAGATCAATGAACTATTGCTAACA 57.209 30.769 0.00 0.00 44.69 2.41
1557 1655 7.756395 AACAGAACAACATCTCAAGATCAAT 57.244 32.000 0.00 0.00 31.21 2.57
1607 1705 6.288294 GTGTGGACTAATTCTGTATATGCCA 58.712 40.000 0.00 0.00 0.00 4.92
1689 1787 7.445121 AGACATAACATTCAACTGAACTCTCA 58.555 34.615 0.00 0.00 36.80 3.27
1697 1795 9.926751 GTGATCATAAGACATAACATTCAACTG 57.073 33.333 0.00 0.00 0.00 3.16
1780 1878 9.487790 CCAAAAACAGGAAAAGCTATATGAAAA 57.512 29.630 0.00 0.00 0.00 2.29
1903 2001 9.090692 ACAATATGAATAAAAACATCTGCAAGC 57.909 29.630 0.00 0.00 0.00 4.01
1957 2056 2.509569 ACATGGCAAATGTACCAACGA 58.490 42.857 2.62 0.00 39.96 3.85
2189 2289 7.324388 TGGGTTTCCTTGATCTCTTACTTAA 57.676 36.000 0.00 0.00 0.00 1.85
2190 2290 6.945636 TGGGTTTCCTTGATCTCTTACTTA 57.054 37.500 0.00 0.00 0.00 2.24
2271 2371 7.880160 TGTACATCTTGCCATAAAAGCTATT 57.120 32.000 0.00 0.00 0.00 1.73
2279 2379 8.523915 AGATTGATTTGTACATCTTGCCATAA 57.476 30.769 0.00 0.00 0.00 1.90
2430 2530 7.040062 CCACAGTTTATGGGATCACAAAAACTA 60.040 37.037 0.00 0.00 34.62 2.24
2543 2643 8.741101 TTTCGATCCAGAAAAACATTATGTTG 57.259 30.769 11.60 0.00 40.14 3.33
2813 2913 9.090692 CATCTACAAAATGAATGAATCAAACCC 57.909 33.333 0.00 0.00 42.54 4.11
2814 2914 9.859427 TCATCTACAAAATGAATGAATCAAACC 57.141 29.630 0.00 0.00 42.54 3.27
2825 2925 9.986833 CGATACAAACATCATCTACAAAATGAA 57.013 29.630 0.00 0.00 36.75 2.57
2826 2926 8.122330 GCGATACAAACATCATCTACAAAATGA 58.878 33.333 0.00 0.00 37.53 2.57
2827 2927 8.124823 AGCGATACAAACATCATCTACAAAATG 58.875 33.333 0.00 0.00 0.00 2.32
2828 2928 8.124823 CAGCGATACAAACATCATCTACAAAAT 58.875 33.333 0.00 0.00 0.00 1.82
2829 2929 7.333174 TCAGCGATACAAACATCATCTACAAAA 59.667 33.333 0.00 0.00 0.00 2.44
2830 2930 6.816140 TCAGCGATACAAACATCATCTACAAA 59.184 34.615 0.00 0.00 0.00 2.83
2836 2937 4.461405 GCATCAGCGATACAAACATCATC 58.539 43.478 0.00 0.00 0.00 2.92
2852 2953 5.947228 TCAAACTAGAAAACCAGCATCAG 57.053 39.130 0.00 0.00 0.00 2.90
3095 3197 3.699538 CTCTTAAAGTTAATGTGGCCCCC 59.300 47.826 0.00 0.00 0.00 5.40
3211 3316 1.398799 AGAGAGAAAGGGAGAGGGGA 58.601 55.000 0.00 0.00 0.00 4.81
3442 3555 4.269523 TGCACTTGGAAGCGGGCT 62.270 61.111 0.00 0.00 0.00 5.19
3798 3916 1.398390 CATTCCACTCCTTTGCGCTAC 59.602 52.381 9.73 0.00 0.00 3.58
3799 3917 1.277842 TCATTCCACTCCTTTGCGCTA 59.722 47.619 9.73 0.00 0.00 4.26
3800 3918 0.036732 TCATTCCACTCCTTTGCGCT 59.963 50.000 9.73 0.00 0.00 5.92
3801 3919 0.881118 TTCATTCCACTCCTTTGCGC 59.119 50.000 0.00 0.00 0.00 6.09
3802 3920 1.135575 GCTTCATTCCACTCCTTTGCG 60.136 52.381 0.00 0.00 0.00 4.85
3803 3921 1.888512 TGCTTCATTCCACTCCTTTGC 59.111 47.619 0.00 0.00 0.00 3.68
3804 3922 3.760151 TCATGCTTCATTCCACTCCTTTG 59.240 43.478 0.00 0.00 0.00 2.77
3805 3923 4.038271 TCATGCTTCATTCCACTCCTTT 57.962 40.909 0.00 0.00 0.00 3.11
3806 3924 3.726557 TCATGCTTCATTCCACTCCTT 57.273 42.857 0.00 0.00 0.00 3.36
3807 3925 3.726557 TTCATGCTTCATTCCACTCCT 57.273 42.857 0.00 0.00 0.00 3.69
3808 3926 3.949754 TCATTCATGCTTCATTCCACTCC 59.050 43.478 0.00 0.00 0.00 3.85
3809 3927 4.497674 GCTCATTCATGCTTCATTCCACTC 60.498 45.833 0.00 0.00 0.00 3.51
3810 3928 3.380637 GCTCATTCATGCTTCATTCCACT 59.619 43.478 0.00 0.00 0.00 4.00
3811 3929 3.703420 GCTCATTCATGCTTCATTCCAC 58.297 45.455 0.00 0.00 0.00 4.02
3812 3930 2.356695 CGCTCATTCATGCTTCATTCCA 59.643 45.455 0.00 0.00 0.00 3.53
3813 3931 2.287427 CCGCTCATTCATGCTTCATTCC 60.287 50.000 0.00 0.00 0.00 3.01
3814 3932 2.357009 ACCGCTCATTCATGCTTCATTC 59.643 45.455 0.00 0.00 0.00 2.67
3815 3933 2.372264 ACCGCTCATTCATGCTTCATT 58.628 42.857 0.00 0.00 0.00 2.57
3816 3934 2.048444 ACCGCTCATTCATGCTTCAT 57.952 45.000 0.00 0.00 0.00 2.57
3817 3935 1.469703 CAACCGCTCATTCATGCTTCA 59.530 47.619 0.00 0.00 0.00 3.02
3970 4102 2.693864 CCCCAGCTGGAGGGTCAT 60.694 66.667 34.91 0.00 45.28 3.06
4157 4289 4.451150 GGATGGAGCACGCCGTCA 62.451 66.667 13.63 0.00 44.19 4.35
4563 4738 1.547675 GGACCAAAACTCTGCCATCCA 60.548 52.381 0.00 0.00 0.00 3.41
4672 4847 8.692710 ACAATCCGAAGTAATTAGAGTCACATA 58.307 33.333 0.00 0.00 0.00 2.29
5053 6000 2.358247 CCACCACTTTCGTCCGGG 60.358 66.667 0.00 0.00 0.00 5.73
5439 6782 2.358247 CCCACCACTTTCGTCCGG 60.358 66.667 0.00 0.00 0.00 5.14
5589 6933 7.201679 GCTCATGGTAATTATCCAGTCATATGC 60.202 40.741 0.00 0.00 38.42 3.14
5615 6959 9.981114 AAAAACTCCAAACCAAAGACATAATAG 57.019 29.630 0.00 0.00 0.00 1.73
5741 7085 8.621286 TCTTTTTCCTCAGTGAAATGAACTAAC 58.379 33.333 0.00 0.00 34.41 2.34
6228 7572 6.928520 AGAATCCTAAACAGCAATGAAAAGG 58.071 36.000 0.00 0.00 0.00 3.11
6254 7598 5.645497 GCAAACCTCATCTTCTAACAGTGAT 59.355 40.000 0.00 0.00 0.00 3.06
6255 7599 4.997395 GCAAACCTCATCTTCTAACAGTGA 59.003 41.667 0.00 0.00 0.00 3.41
6265 7609 3.760684 GGAACATCAGCAAACCTCATCTT 59.239 43.478 0.00 0.00 0.00 2.40
6269 7613 2.957402 AGGAACATCAGCAAACCTCA 57.043 45.000 0.00 0.00 0.00 3.86
6272 7616 8.352942 CCTATATAAAAGGAACATCAGCAAACC 58.647 37.037 0.00 0.00 36.08 3.27
6323 7667 3.399330 CTCCTGCAAACCGAAAGTTAGA 58.601 45.455 0.00 0.00 37.88 2.10
6332 7676 2.281761 ACTGGCTCCTGCAAACCG 60.282 61.111 0.00 0.00 41.91 4.44
6505 7849 1.123928 CAGGGAAGCCGGAGTAGAAT 58.876 55.000 5.05 0.00 0.00 2.40
6615 7959 2.556189 TGCTGCATTGTAACGGATTGTT 59.444 40.909 0.00 0.00 44.78 2.83
6616 7960 2.158559 TGCTGCATTGTAACGGATTGT 58.841 42.857 0.00 0.00 0.00 2.71
6647 7991 4.219033 CCACGTCATCTGCAAAAAGTAAC 58.781 43.478 0.00 0.00 0.00 2.50
6731 8082 6.650120 TGAATAAGGATTGGTACTCTTGTCC 58.350 40.000 0.00 0.00 0.00 4.02
6755 8106 6.868339 GCTGCTGGAAAGTTATTAAATGTGTT 59.132 34.615 0.00 0.00 0.00 3.32
6915 8266 0.255890 ACAGAAGTATGCCCGCCAAT 59.744 50.000 0.00 0.00 0.00 3.16
7124 8596 5.065602 ACGACAACAATCATCATCATCAAGG 59.934 40.000 0.00 0.00 0.00 3.61
7168 8643 0.031585 CGTCTGACCTCCGAACAACA 59.968 55.000 1.55 0.00 0.00 3.33
7305 8804 0.611896 GGGTCATGGGGGAAACTGTG 60.612 60.000 0.00 0.00 0.00 3.66
7310 8809 0.863956 AAACTGGGTCATGGGGGAAA 59.136 50.000 0.00 0.00 0.00 3.13
7313 8812 0.114168 TGAAAACTGGGTCATGGGGG 59.886 55.000 0.00 0.00 0.00 5.40
7334 8833 2.160205 CCCTGTTCGTCACTCACTAGA 58.840 52.381 0.00 0.00 0.00 2.43
7335 8834 1.402984 GCCCTGTTCGTCACTCACTAG 60.403 57.143 0.00 0.00 0.00 2.57
7336 8835 0.601558 GCCCTGTTCGTCACTCACTA 59.398 55.000 0.00 0.00 0.00 2.74
7337 8836 1.367840 GCCCTGTTCGTCACTCACT 59.632 57.895 0.00 0.00 0.00 3.41
7395 8894 2.359376 TGGAAGGAGGAAGATCCCAA 57.641 50.000 0.00 0.00 40.53 4.12
7398 8897 2.224499 GCAGATGGAAGGAGGAAGATCC 60.224 54.545 0.00 0.00 39.89 3.36
7404 8903 2.735772 GCGGCAGATGGAAGGAGGA 61.736 63.158 0.00 0.00 0.00 3.71
7493 8992 4.347453 CAAAGCCACACTGCCGCC 62.347 66.667 0.00 0.00 0.00 6.13
7499 8998 2.814805 ATAGCCATCAAAGCCACACT 57.185 45.000 0.00 0.00 0.00 3.55
7501 9000 5.303259 TGTATATAGCCATCAAAGCCACA 57.697 39.130 0.00 0.00 0.00 4.17
7509 9008 6.382282 CCTCTTCCAGATGTATATAGCCATCA 59.618 42.308 13.13 0.00 39.92 3.07
7516 9015 8.010697 TCTTTCCACCTCTTCCAGATGTATATA 58.989 37.037 0.00 0.00 0.00 0.86
7517 9016 6.846505 TCTTTCCACCTCTTCCAGATGTATAT 59.153 38.462 0.00 0.00 0.00 0.86
7518 9017 6.202331 TCTTTCCACCTCTTCCAGATGTATA 58.798 40.000 0.00 0.00 0.00 1.47
7543 11767 0.390472 CTCCGAACAGGCACCTCTTC 60.390 60.000 0.00 0.00 40.77 2.87
7544 11768 1.674057 CTCCGAACAGGCACCTCTT 59.326 57.895 0.00 0.00 40.77 2.85
7553 11777 0.745845 CAAGGGATGCCTCCGAACAG 60.746 60.000 6.10 0.00 43.11 3.16
7564 11788 1.475280 CAGGCACATGTTCAAGGGATG 59.525 52.381 0.00 0.00 0.00 3.51
7565 11789 1.355381 TCAGGCACATGTTCAAGGGAT 59.645 47.619 0.00 0.00 0.00 3.85
7566 11790 0.770499 TCAGGCACATGTTCAAGGGA 59.230 50.000 0.00 0.00 0.00 4.20
7572 11796 1.071605 GACGTCTCAGGCACATGTTC 58.928 55.000 8.70 0.00 0.00 3.18
7573 11797 0.392706 TGACGTCTCAGGCACATGTT 59.607 50.000 17.92 0.00 0.00 2.71
7575 11799 0.037882 AGTGACGTCTCAGGCACATG 60.038 55.000 17.92 0.00 33.85 3.21
7577 11801 1.545841 ATAGTGACGTCTCAGGCACA 58.454 50.000 17.92 0.00 33.85 4.57
7578 11802 2.531206 GAATAGTGACGTCTCAGGCAC 58.469 52.381 17.92 5.89 0.00 5.01
7579 11803 1.132453 CGAATAGTGACGTCTCAGGCA 59.868 52.381 17.92 0.73 0.00 4.75
7581 11805 1.065701 CCCGAATAGTGACGTCTCAGG 59.934 57.143 17.92 11.85 0.00 3.86
7582 11806 1.065701 CCCCGAATAGTGACGTCTCAG 59.934 57.143 17.92 0.00 0.00 3.35
7584 11808 1.101331 ACCCCGAATAGTGACGTCTC 58.899 55.000 17.92 13.63 0.00 3.36
7586 11810 1.636988 CAACCCCGAATAGTGACGTC 58.363 55.000 9.11 9.11 0.00 4.34
7587 11811 0.248289 CCAACCCCGAATAGTGACGT 59.752 55.000 0.00 0.00 0.00 4.34
7588 11812 0.533491 TCCAACCCCGAATAGTGACG 59.467 55.000 0.00 0.00 0.00 4.35
7591 11815 1.002659 TGTGTCCAACCCCGAATAGTG 59.997 52.381 0.00 0.00 0.00 2.74
7656 12230 7.921041 AGATTGAATATGGAGGAGTGTTAGA 57.079 36.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.