Multiple sequence alignment - TraesCS1B01G142300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G142300 chr1B 100.000 5382 0 0 1 5382 191000961 191006342 0.000000e+00 9939.0
1 TraesCS1B01G142300 chr1B 91.010 723 54 8 1788 2507 590412998 590412284 0.000000e+00 965.0
2 TraesCS1B01G142300 chr1B 97.895 95 2 0 5288 5382 191011194 191011288 1.200000e-36 165.0
3 TraesCS1B01G142300 chr1D 96.897 5028 89 24 1 5007 142153133 142148152 0.000000e+00 8359.0
4 TraesCS1B01G142300 chr1D 89.638 994 75 12 1517 2507 468030352 468031320 0.000000e+00 1240.0
5 TraesCS1B01G142300 chr1A 95.456 2355 71 15 1 2350 148266328 148268651 0.000000e+00 3723.0
6 TraesCS1B01G142300 chr1A 95.900 1561 40 10 2380 3926 148268649 148270199 0.000000e+00 2507.0
7 TraesCS1B01G142300 chr1A 95.795 1094 30 6 3917 5007 148270418 148271498 0.000000e+00 1751.0
8 TraesCS1B01G142300 chr7B 88.342 995 90 13 1517 2509 210630008 210629038 0.000000e+00 1171.0
9 TraesCS1B01G142300 chr7B 95.089 224 8 1 5068 5288 703295482 703295705 3.080000e-92 350.0
10 TraesCS1B01G142300 chr7B 100.000 32 0 0 3712 3743 458161036 458161005 5.820000e-05 60.2
11 TraesCS1B01G142300 chr5A 91.148 723 53 8 1788 2507 473425986 473426700 0.000000e+00 970.0
12 TraesCS1B01G142300 chr4A 88.190 779 70 17 1732 2507 638241367 638240608 0.000000e+00 909.0
13 TraesCS1B01G142300 chr4A 86.624 157 19 1 1517 1673 638241535 638241381 7.170000e-39 172.0
14 TraesCS1B01G142300 chr5B 88.062 779 71 17 1732 2507 407322374 407321615 0.000000e+00 904.0
15 TraesCS1B01G142300 chr5B 85.987 157 20 1 1517 1673 407322542 407322388 3.330000e-37 167.0
16 TraesCS1B01G142300 chr5D 86.567 737 64 16 1773 2507 69675402 69676105 0.000000e+00 780.0
17 TraesCS1B01G142300 chr6A 79.295 227 41 5 5068 5290 394614261 394614485 2.600000e-33 154.0
18 TraesCS1B01G142300 chr3D 74.874 199 36 11 35 224 120100794 120100987 1.610000e-10 78.7
19 TraesCS1B01G142300 chr2B 95.349 43 2 0 29 71 592579073 592579115 9.670000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G142300 chr1B 191000961 191006342 5381 False 9939.000000 9939 100.0000 1 5382 1 chr1B.!!$F1 5381
1 TraesCS1B01G142300 chr1B 590412284 590412998 714 True 965.000000 965 91.0100 1788 2507 1 chr1B.!!$R1 719
2 TraesCS1B01G142300 chr1D 142148152 142153133 4981 True 8359.000000 8359 96.8970 1 5007 1 chr1D.!!$R1 5006
3 TraesCS1B01G142300 chr1D 468030352 468031320 968 False 1240.000000 1240 89.6380 1517 2507 1 chr1D.!!$F1 990
4 TraesCS1B01G142300 chr1A 148266328 148271498 5170 False 2660.333333 3723 95.7170 1 5007 3 chr1A.!!$F1 5006
5 TraesCS1B01G142300 chr7B 210629038 210630008 970 True 1171.000000 1171 88.3420 1517 2509 1 chr7B.!!$R1 992
6 TraesCS1B01G142300 chr5A 473425986 473426700 714 False 970.000000 970 91.1480 1788 2507 1 chr5A.!!$F1 719
7 TraesCS1B01G142300 chr4A 638240608 638241535 927 True 540.500000 909 87.4070 1517 2507 2 chr4A.!!$R1 990
8 TraesCS1B01G142300 chr5B 407321615 407322542 927 True 535.500000 904 87.0245 1517 2507 2 chr5B.!!$R1 990
9 TraesCS1B01G142300 chr5D 69675402 69676105 703 False 780.000000 780 86.5670 1773 2507 1 chr5D.!!$F1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 1.070289 GGAGTCCACCGAAGTCACTTT 59.930 52.381 3.60 0.00 0.00 2.66 F
1009 1019 0.184451 CCCTAGCCACATGGAGCATT 59.816 55.000 11.28 0.00 37.39 3.56 F
1881 1900 1.202758 TGTTGTTGACTACCAGCCTGG 60.203 52.381 9.83 9.83 45.02 4.45 F
2388 2445 2.437359 ACTTGATGCAGAGGCCGC 60.437 61.111 0.00 0.00 40.13 6.53 F
2723 2785 5.437191 ACTGTTTTAGGCTTATAGCTGGT 57.563 39.130 0.00 0.00 41.99 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1659 0.178975 AGCCGTCCAAATTTGTCCCA 60.179 50.000 16.73 0.0 0.00 4.37 R
2388 2445 2.561478 TTTCAGAAAGGGGAAGACCG 57.439 50.000 0.00 0.0 41.60 4.79 R
3877 3953 6.596106 AGTTTGACAAATGTACACTACACACA 59.404 34.615 3.49 0.0 42.23 3.72 R
4051 4355 1.268488 GCACGCGGATATTCAAATGCA 60.268 47.619 12.47 0.0 0.00 3.96 R
4682 4989 0.790207 CCGTCAGTGAATGGTGAACG 59.210 55.000 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 2.561478 ATGATACGGTGTTATGCCCC 57.439 50.000 0.00 0.00 0.00 5.80
260 261 4.015872 TGTTTATGTCAAGGAGTCCACC 57.984 45.455 12.86 0.00 0.00 4.61
271 272 1.070289 GGAGTCCACCGAAGTCACTTT 59.930 52.381 3.60 0.00 0.00 2.66
332 333 3.432252 TCTCGTCTCCGAAAATTTTCAGC 59.568 43.478 26.20 13.76 43.69 4.26
338 339 6.074356 CGTCTCCGAAAATTTTCAGCAATTTT 60.074 34.615 26.20 5.23 45.12 1.82
394 395 4.022413 TCAAATCGGTTGTAATGGGACA 57.978 40.909 0.00 0.00 40.05 4.02
400 401 9.837907 CAAATCGGTTGTAATGGGACACAAGAC 62.838 44.444 0.00 0.00 35.43 3.01
427 428 4.080243 TCAGGTATCTCCGGGCATTAAAAA 60.080 41.667 0.00 0.00 41.99 1.94
435 439 5.530915 TCTCCGGGCATTAAAAAGACATATG 59.469 40.000 0.00 0.00 0.00 1.78
438 442 7.001674 TCCGGGCATTAAAAAGACATATGTAT 58.998 34.615 8.71 1.87 0.00 2.29
600 604 6.534475 TCTGGCAGAAATTGAAAATATGCT 57.466 33.333 16.28 0.00 32.89 3.79
630 634 9.855021 AATATATTTTAGCGGCATTGTTTATCC 57.145 29.630 1.45 0.00 0.00 2.59
631 635 5.852282 ATTTTAGCGGCATTGTTTATCCT 57.148 34.783 1.45 0.00 0.00 3.24
768 773 1.584724 CACCTCCCCACTAATCCACT 58.415 55.000 0.00 0.00 0.00 4.00
900 905 1.347707 CACCACCCACATCACAGTACT 59.652 52.381 0.00 0.00 0.00 2.73
901 906 2.565391 CACCACCCACATCACAGTACTA 59.435 50.000 0.00 0.00 0.00 1.82
902 907 2.565834 ACCACCCACATCACAGTACTAC 59.434 50.000 0.00 0.00 0.00 2.73
903 908 2.565391 CCACCCACATCACAGTACTACA 59.435 50.000 0.00 0.00 0.00 2.74
904 909 3.007506 CCACCCACATCACAGTACTACAA 59.992 47.826 0.00 0.00 0.00 2.41
905 910 4.245660 CACCCACATCACAGTACTACAAG 58.754 47.826 0.00 0.00 0.00 3.16
906 911 3.262420 CCCACATCACAGTACTACAAGC 58.738 50.000 0.00 0.00 0.00 4.01
907 912 3.262420 CCACATCACAGTACTACAAGCC 58.738 50.000 0.00 0.00 0.00 4.35
920 925 1.123246 ACAAGCCAAGCCAAGCCAAT 61.123 50.000 0.00 0.00 0.00 3.16
937 947 2.026449 CCAATCCAAGCCAGAGAAGAGT 60.026 50.000 0.00 0.00 0.00 3.24
989 999 3.124921 GTGTCCGCCCCATTCACG 61.125 66.667 0.00 0.00 0.00 4.35
1009 1019 0.184451 CCCTAGCCACATGGAGCATT 59.816 55.000 11.28 0.00 37.39 3.56
1321 1333 5.551233 TCTTATGTTTCCCTTGTGTCTCTG 58.449 41.667 0.00 0.00 0.00 3.35
1470 1482 7.663905 TGGATTCTTGGTTAGATTTTTCTTCGA 59.336 33.333 0.00 0.00 31.54 3.71
1637 1652 3.882888 CCTGTGTGGTGTTCAATACTGTT 59.117 43.478 0.00 0.00 0.00 3.16
1644 1659 6.103330 GTGGTGTTCAATACTGTTGGTTTTT 58.897 36.000 0.00 0.00 0.00 1.94
1844 1863 2.877168 CAGGTGATTGCTCTAGCCATTC 59.123 50.000 0.00 0.00 41.18 2.67
1856 1875 5.392487 GCTCTAGCCATTCTTTGTTTCCTTC 60.392 44.000 0.00 0.00 34.31 3.46
1881 1900 1.202758 TGTTGTTGACTACCAGCCTGG 60.203 52.381 9.83 9.83 45.02 4.45
2388 2445 2.437359 ACTTGATGCAGAGGCCGC 60.437 61.111 0.00 0.00 40.13 6.53
2653 2715 6.920758 GTGTAGGCTACTCATTCTATTCAGTG 59.079 42.308 24.07 0.00 0.00 3.66
2723 2785 5.437191 ACTGTTTTAGGCTTATAGCTGGT 57.563 39.130 0.00 0.00 41.99 4.00
3084 3160 6.942532 ATTTGGTGCGACTGAATATACAAT 57.057 33.333 0.00 0.00 0.00 2.71
4273 4577 5.655974 TGTGCTTATGGGATCTGCATTTTTA 59.344 36.000 0.00 0.00 36.04 1.52
4276 4580 7.712205 GTGCTTATGGGATCTGCATTTTTATTT 59.288 33.333 0.00 0.00 36.04 1.40
4277 4581 8.266473 TGCTTATGGGATCTGCATTTTTATTTT 58.734 29.630 0.00 0.00 0.00 1.82
4278 4582 9.112725 GCTTATGGGATCTGCATTTTTATTTTT 57.887 29.630 0.00 0.00 0.00 1.94
4521 4825 1.025812 CAGGAGTACCGGTAGAGCAG 58.974 60.000 16.41 1.50 41.83 4.24
4638 4942 7.040686 TCAGTTTTTGCCCTATTGTAAGAGTTC 60.041 37.037 0.00 0.00 0.00 3.01
4682 4989 5.407387 TGGCTCGTAAGTTGTCAACTATTTC 59.593 40.000 18.45 8.49 41.91 2.17
4687 4994 6.696583 TCGTAAGTTGTCAACTATTTCGTTCA 59.303 34.615 18.45 3.93 41.91 3.18
4701 5008 0.790207 CGTTCACCATTCACTGACGG 59.210 55.000 0.00 0.00 0.00 4.79
4712 5019 2.571212 TCACTGACGGAAATTGTTGCT 58.429 42.857 0.00 0.00 0.00 3.91
4746 5053 5.278463 GCTGTTCAATAAGTTGTGTCATGGT 60.278 40.000 0.00 0.00 36.69 3.55
4762 5069 3.188786 GTAGAGCTTGCACGCCCG 61.189 66.667 12.13 0.00 0.00 6.13
4825 5132 3.720193 CGACCCGTCGTGACTCGT 61.720 66.667 9.06 0.00 46.99 4.18
4826 5133 2.126965 GACCCGTCGTGACTCGTG 60.127 66.667 0.00 0.00 40.80 4.35
4827 5134 2.592574 ACCCGTCGTGACTCGTGA 60.593 61.111 0.00 0.00 40.80 4.35
4838 5145 1.758862 TGACTCGTGAGATGGCATGAT 59.241 47.619 3.81 0.00 40.84 2.45
4934 5241 5.063017 AGAATCCAATGCTGATTCCAGAT 57.937 39.130 8.86 0.00 45.96 2.90
5007 5314 3.055819 ACTCGGCAAGTGAACTGATACAT 60.056 43.478 0.00 0.00 36.65 2.29
5008 5315 3.935203 CTCGGCAAGTGAACTGATACATT 59.065 43.478 0.00 0.00 0.00 2.71
5009 5316 4.323417 TCGGCAAGTGAACTGATACATTT 58.677 39.130 0.00 0.00 0.00 2.32
5010 5317 4.759693 TCGGCAAGTGAACTGATACATTTT 59.240 37.500 0.00 0.00 0.00 1.82
5011 5318 5.240623 TCGGCAAGTGAACTGATACATTTTT 59.759 36.000 0.00 0.00 0.00 1.94
5032 5339 3.708563 TTTTTGAGGGAAAGCGAACTG 57.291 42.857 0.00 0.00 0.00 3.16
5033 5340 2.631160 TTTGAGGGAAAGCGAACTGA 57.369 45.000 0.00 0.00 0.00 3.41
5034 5341 2.859165 TTGAGGGAAAGCGAACTGAT 57.141 45.000 0.00 0.00 0.00 2.90
5035 5342 3.973206 TTGAGGGAAAGCGAACTGATA 57.027 42.857 0.00 0.00 0.00 2.15
5036 5343 3.247006 TGAGGGAAAGCGAACTGATAC 57.753 47.619 0.00 0.00 0.00 2.24
5037 5344 2.565391 TGAGGGAAAGCGAACTGATACA 59.435 45.455 0.00 0.00 0.00 2.29
5038 5345 3.007506 TGAGGGAAAGCGAACTGATACAA 59.992 43.478 0.00 0.00 0.00 2.41
5039 5346 4.192317 GAGGGAAAGCGAACTGATACAAT 58.808 43.478 0.00 0.00 0.00 2.71
5040 5347 5.105106 TGAGGGAAAGCGAACTGATACAATA 60.105 40.000 0.00 0.00 0.00 1.90
5041 5348 5.741011 AGGGAAAGCGAACTGATACAATAA 58.259 37.500 0.00 0.00 0.00 1.40
5042 5349 6.357367 AGGGAAAGCGAACTGATACAATAAT 58.643 36.000 0.00 0.00 0.00 1.28
5043 5350 7.506114 AGGGAAAGCGAACTGATACAATAATA 58.494 34.615 0.00 0.00 0.00 0.98
5044 5351 7.990886 AGGGAAAGCGAACTGATACAATAATAA 59.009 33.333 0.00 0.00 0.00 1.40
5045 5352 8.617809 GGGAAAGCGAACTGATACAATAATAAA 58.382 33.333 0.00 0.00 0.00 1.40
5046 5353 9.651718 GGAAAGCGAACTGATACAATAATAAAG 57.348 33.333 0.00 0.00 0.00 1.85
5049 5356 9.988350 AAGCGAACTGATACAATAATAAAGTTG 57.012 29.630 0.00 0.00 0.00 3.16
5050 5357 9.162764 AGCGAACTGATACAATAATAAAGTTGT 57.837 29.630 0.00 0.00 41.16 3.32
5066 5373 9.933723 AATAAAGTTGTACTACGGTTAAGACAT 57.066 29.630 1.74 0.00 0.00 3.06
5067 5374 9.933723 ATAAAGTTGTACTACGGTTAAGACATT 57.066 29.630 1.74 0.00 0.00 2.71
5068 5375 8.667076 AAAGTTGTACTACGGTTAAGACATTT 57.333 30.769 1.74 0.00 0.00 2.32
5069 5376 9.762933 AAAGTTGTACTACGGTTAAGACATTTA 57.237 29.630 1.74 0.00 0.00 1.40
5070 5377 8.976986 AGTTGTACTACGGTTAAGACATTTAG 57.023 34.615 1.74 0.00 0.00 1.85
5071 5378 8.031277 AGTTGTACTACGGTTAAGACATTTAGG 58.969 37.037 1.74 0.00 0.00 2.69
5072 5379 6.332630 TGTACTACGGTTAAGACATTTAGGC 58.667 40.000 0.00 0.00 0.00 3.93
5073 5380 4.763073 ACTACGGTTAAGACATTTAGGCC 58.237 43.478 0.00 0.00 0.00 5.19
5074 5381 3.994931 ACGGTTAAGACATTTAGGCCT 57.005 42.857 11.78 11.78 0.00 5.19
5075 5382 3.870274 ACGGTTAAGACATTTAGGCCTC 58.130 45.455 9.68 0.00 0.00 4.70
5076 5383 2.864343 CGGTTAAGACATTTAGGCCTCG 59.136 50.000 9.68 0.00 0.00 4.63
5077 5384 3.677976 CGGTTAAGACATTTAGGCCTCGT 60.678 47.826 9.68 1.83 0.00 4.18
5078 5385 4.259356 GGTTAAGACATTTAGGCCTCGTT 58.741 43.478 9.68 0.00 0.00 3.85
5079 5386 4.698780 GGTTAAGACATTTAGGCCTCGTTT 59.301 41.667 9.68 0.00 0.00 3.60
5080 5387 5.391629 GGTTAAGACATTTAGGCCTCGTTTG 60.392 44.000 9.68 5.90 0.00 2.93
5081 5388 2.711542 AGACATTTAGGCCTCGTTTGG 58.288 47.619 9.68 0.00 0.00 3.28
5082 5389 2.039879 AGACATTTAGGCCTCGTTTGGT 59.960 45.455 9.68 0.60 0.00 3.67
5083 5390 2.817844 GACATTTAGGCCTCGTTTGGTT 59.182 45.455 9.68 0.00 0.00 3.67
5084 5391 4.004982 GACATTTAGGCCTCGTTTGGTTA 58.995 43.478 9.68 0.00 0.00 2.85
5085 5392 4.595986 ACATTTAGGCCTCGTTTGGTTAT 58.404 39.130 9.68 0.00 0.00 1.89
5086 5393 4.638865 ACATTTAGGCCTCGTTTGGTTATC 59.361 41.667 9.68 0.00 0.00 1.75
5087 5394 2.994186 TAGGCCTCGTTTGGTTATCC 57.006 50.000 9.68 0.00 0.00 2.59
5088 5395 0.107848 AGGCCTCGTTTGGTTATCCG 60.108 55.000 0.00 0.00 36.30 4.18
5089 5396 0.108041 GGCCTCGTTTGGTTATCCGA 60.108 55.000 0.00 0.00 36.30 4.55
5090 5397 1.287425 GCCTCGTTTGGTTATCCGAG 58.713 55.000 0.00 0.00 44.72 4.63
5094 5401 3.447918 TCGTTTGGTTATCCGAGATCC 57.552 47.619 0.00 0.00 36.30 3.36
5095 5402 2.101917 TCGTTTGGTTATCCGAGATCCC 59.898 50.000 0.00 0.00 36.30 3.85
5096 5403 2.480845 GTTTGGTTATCCGAGATCCCG 58.519 52.381 0.00 0.00 36.30 5.14
5115 5422 3.237414 GGGGATCCCCGTCGAAAT 58.763 61.111 34.54 0.00 46.66 2.17
5116 5423 1.070957 GGGGATCCCCGTCGAAATC 59.929 63.158 34.54 8.17 46.66 2.17
5117 5424 1.070957 GGGATCCCCGTCGAAATCC 59.929 63.158 21.42 10.36 37.53 3.01
5118 5425 1.692173 GGGATCCCCGTCGAAATCCA 61.692 60.000 21.42 0.00 39.59 3.41
5119 5426 0.249911 GGATCCCCGTCGAAATCCAG 60.250 60.000 0.00 0.00 38.05 3.86
5120 5427 0.249911 GATCCCCGTCGAAATCCAGG 60.250 60.000 0.00 0.00 0.00 4.45
5121 5428 1.696097 ATCCCCGTCGAAATCCAGGG 61.696 60.000 0.00 0.00 41.68 4.45
5122 5429 2.513897 CCCGTCGAAATCCAGGGC 60.514 66.667 0.00 0.00 35.09 5.19
5123 5430 2.890474 CCGTCGAAATCCAGGGCG 60.890 66.667 0.00 0.00 0.00 6.13
5124 5431 3.564027 CGTCGAAATCCAGGGCGC 61.564 66.667 0.00 0.00 0.00 6.53
5125 5432 2.435938 GTCGAAATCCAGGGCGCA 60.436 61.111 10.83 0.00 0.00 6.09
5126 5433 1.819632 GTCGAAATCCAGGGCGCAT 60.820 57.895 10.83 0.00 0.00 4.73
5127 5434 1.819208 TCGAAATCCAGGGCGCATG 60.819 57.895 10.83 7.39 0.00 4.06
5128 5435 2.837883 CGAAATCCAGGGCGCATGG 61.838 63.158 21.50 21.50 39.33 3.66
5129 5436 3.142820 GAAATCCAGGGCGCATGGC 62.143 63.158 22.42 7.95 37.76 4.40
5154 5461 2.281484 GCAACTCAGCCCGTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
5155 5462 1.896660 GCAACTCAGCCCGTGGAAA 60.897 57.895 0.00 0.00 0.00 3.13
5156 5463 1.452145 GCAACTCAGCCCGTGGAAAA 61.452 55.000 0.00 0.00 0.00 2.29
5157 5464 0.310854 CAACTCAGCCCGTGGAAAAC 59.689 55.000 0.00 0.00 0.00 2.43
5166 5473 3.165498 GTGGAAAACGATCGCGCT 58.835 55.556 16.60 0.00 42.48 5.92
5167 5474 2.365823 GTGGAAAACGATCGCGCTA 58.634 52.632 16.60 0.00 42.48 4.26
5168 5475 0.928229 GTGGAAAACGATCGCGCTAT 59.072 50.000 16.60 0.00 42.48 2.97
5169 5476 1.326548 GTGGAAAACGATCGCGCTATT 59.673 47.619 16.60 3.03 42.48 1.73
5170 5477 2.004017 TGGAAAACGATCGCGCTATTT 58.996 42.857 16.60 8.89 42.48 1.40
5171 5478 2.222931 TGGAAAACGATCGCGCTATTTG 60.223 45.455 16.60 0.00 42.48 2.32
5172 5479 2.363220 GAAAACGATCGCGCTATTTGG 58.637 47.619 16.60 0.00 42.48 3.28
5173 5480 1.365699 AAACGATCGCGCTATTTGGT 58.634 45.000 16.60 0.00 42.48 3.67
5174 5481 0.928229 AACGATCGCGCTATTTGGTC 59.072 50.000 16.60 0.00 42.48 4.02
5175 5482 1.206745 ACGATCGCGCTATTTGGTCG 61.207 55.000 16.60 12.39 42.48 4.79
5176 5483 1.201825 GATCGCGCTATTTGGTCGC 59.798 57.895 5.56 0.00 44.76 5.19
5177 5484 1.215655 GATCGCGCTATTTGGTCGCT 61.216 55.000 5.56 0.00 45.87 4.93
5178 5485 1.215655 ATCGCGCTATTTGGTCGCTC 61.216 55.000 5.56 0.00 45.87 5.03
5179 5486 2.164663 CGCGCTATTTGGTCGCTCA 61.165 57.895 5.56 0.00 45.87 4.26
5180 5487 1.348594 GCGCTATTTGGTCGCTCAC 59.651 57.895 0.00 0.00 44.79 3.51
5181 5488 1.084370 GCGCTATTTGGTCGCTCACT 61.084 55.000 0.00 0.00 44.79 3.41
5182 5489 0.647410 CGCTATTTGGTCGCTCACTG 59.353 55.000 0.00 0.00 0.00 3.66
5183 5490 0.375106 GCTATTTGGTCGCTCACTGC 59.625 55.000 0.00 0.00 38.57 4.40
5184 5491 1.009829 CTATTTGGTCGCTCACTGCC 58.990 55.000 0.00 0.00 38.78 4.85
5185 5492 0.739462 TATTTGGTCGCTCACTGCCG 60.739 55.000 0.00 0.00 38.78 5.69
5186 5493 4.680237 TTGGTCGCTCACTGCCGG 62.680 66.667 0.00 0.00 38.78 6.13
5188 5495 4.803426 GGTCGCTCACTGCCGGAG 62.803 72.222 5.05 1.84 38.78 4.63
5201 5508 2.361230 CGGAGGGTTTTCTGGCCC 60.361 66.667 0.00 0.00 45.16 5.80
5205 5512 3.920031 GGGTTTTCTGGCCCGATC 58.080 61.111 0.00 0.00 34.90 3.69
5206 5513 1.753078 GGGTTTTCTGGCCCGATCC 60.753 63.158 0.00 2.66 34.90 3.36
5207 5514 1.001393 GGTTTTCTGGCCCGATCCA 60.001 57.895 0.00 0.00 34.42 3.41
5208 5515 1.313091 GGTTTTCTGGCCCGATCCAC 61.313 60.000 0.00 0.00 31.74 4.02
5209 5516 1.376683 TTTTCTGGCCCGATCCACG 60.377 57.895 0.00 0.00 42.18 4.94
5210 5517 2.119484 TTTTCTGGCCCGATCCACGT 62.119 55.000 0.00 0.00 40.78 4.49
5211 5518 2.515996 TTTCTGGCCCGATCCACGTC 62.516 60.000 0.00 0.00 40.78 4.34
5212 5519 4.873129 CTGGCCCGATCCACGTCG 62.873 72.222 0.00 0.00 40.78 5.12
5214 5521 4.446413 GGCCCGATCCACGTCGTT 62.446 66.667 0.00 0.00 39.89 3.85
5215 5522 2.433664 GCCCGATCCACGTCGTTT 60.434 61.111 0.00 0.00 39.89 3.60
5216 5523 2.450345 GCCCGATCCACGTCGTTTC 61.450 63.158 0.00 0.00 39.89 2.78
5217 5524 1.808390 CCCGATCCACGTCGTTTCC 60.808 63.158 0.00 0.00 39.89 3.13
5218 5525 1.808390 CCGATCCACGTCGTTTCCC 60.808 63.158 0.00 0.00 39.89 3.97
5219 5526 1.214589 CGATCCACGTCGTTTCCCT 59.785 57.895 0.00 0.00 36.88 4.20
5220 5527 1.076533 CGATCCACGTCGTTTCCCTG 61.077 60.000 0.00 0.00 36.88 4.45
5221 5528 0.739813 GATCCACGTCGTTTCCCTGG 60.740 60.000 0.00 0.00 0.00 4.45
5222 5529 2.180159 ATCCACGTCGTTTCCCTGGG 62.180 60.000 6.33 6.33 0.00 4.45
5223 5530 2.738480 CACGTCGTTTCCCTGGGA 59.262 61.111 12.53 12.53 0.00 4.37
5224 5531 1.374252 CACGTCGTTTCCCTGGGAG 60.374 63.158 16.38 4.73 31.21 4.30
5225 5532 1.532316 ACGTCGTTTCCCTGGGAGA 60.532 57.895 16.38 8.99 31.21 3.71
5226 5533 1.215647 CGTCGTTTCCCTGGGAGAG 59.784 63.158 16.38 11.24 31.21 3.20
5227 5534 1.079057 GTCGTTTCCCTGGGAGAGC 60.079 63.158 16.38 9.11 31.21 4.09
5228 5535 1.535444 TCGTTTCCCTGGGAGAGCA 60.535 57.895 16.38 0.00 31.21 4.26
5229 5536 1.125093 TCGTTTCCCTGGGAGAGCAA 61.125 55.000 16.38 4.37 31.21 3.91
5230 5537 0.035056 CGTTTCCCTGGGAGAGCAAT 60.035 55.000 16.38 0.00 31.21 3.56
5231 5538 1.756430 GTTTCCCTGGGAGAGCAATC 58.244 55.000 16.38 0.00 31.21 2.67
5232 5539 0.625849 TTTCCCTGGGAGAGCAATCC 59.374 55.000 16.38 0.00 38.76 3.01
5233 5540 0.549902 TTCCCTGGGAGAGCAATCCA 60.550 55.000 16.38 0.00 41.52 3.41
5234 5541 0.327867 TCCCTGGGAGAGCAATCCAT 60.328 55.000 12.53 0.00 41.52 3.41
5235 5542 0.178998 CCCTGGGAGAGCAATCCATG 60.179 60.000 7.01 0.00 41.52 3.66
5236 5543 0.178998 CCTGGGAGAGCAATCCATGG 60.179 60.000 4.97 4.97 41.52 3.66
5237 5544 0.822532 CTGGGAGAGCAATCCATGGC 60.823 60.000 6.96 0.00 41.52 4.40
5238 5545 1.284111 TGGGAGAGCAATCCATGGCT 61.284 55.000 6.96 0.00 44.48 4.75
5241 5548 4.863707 GAGCAATCCATGGCTCGA 57.136 55.556 6.96 0.00 46.01 4.04
5242 5549 2.614581 GAGCAATCCATGGCTCGAG 58.385 57.895 8.45 8.45 46.01 4.04
5243 5550 0.883814 GAGCAATCCATGGCTCGAGG 60.884 60.000 15.58 0.00 46.01 4.63
5244 5551 1.895707 GCAATCCATGGCTCGAGGG 60.896 63.158 15.58 6.85 0.00 4.30
5245 5552 1.228063 CAATCCATGGCTCGAGGGG 60.228 63.158 15.58 0.00 0.00 4.79
5246 5553 1.694169 AATCCATGGCTCGAGGGGT 60.694 57.895 15.58 0.00 0.00 4.95
5247 5554 1.987807 AATCCATGGCTCGAGGGGTG 61.988 60.000 15.58 0.00 0.00 4.61
5248 5555 4.181010 CCATGGCTCGAGGGGTGG 62.181 72.222 15.58 0.00 0.00 4.61
5249 5556 3.083349 CATGGCTCGAGGGGTGGA 61.083 66.667 15.58 0.00 0.00 4.02
5250 5557 2.765807 ATGGCTCGAGGGGTGGAG 60.766 66.667 15.58 0.00 0.00 3.86
5251 5558 3.317436 ATGGCTCGAGGGGTGGAGA 62.317 63.158 15.58 0.00 31.90 3.71
5252 5559 2.683933 GGCTCGAGGGGTGGAGAA 60.684 66.667 15.58 0.00 31.90 2.87
5253 5560 2.291043 GGCTCGAGGGGTGGAGAAA 61.291 63.158 15.58 0.00 31.90 2.52
5254 5561 1.677552 GCTCGAGGGGTGGAGAAAA 59.322 57.895 15.58 0.00 31.90 2.29
5255 5562 0.253327 GCTCGAGGGGTGGAGAAAAT 59.747 55.000 15.58 0.00 31.90 1.82
5256 5563 1.744114 GCTCGAGGGGTGGAGAAAATC 60.744 57.143 15.58 0.00 31.90 2.17
5277 5584 3.159984 GCGTTGGCTTCTCTCACG 58.840 61.111 0.00 0.00 35.83 4.35
5278 5585 3.016474 GCGTTGGCTTCTCTCACGC 62.016 63.158 0.00 0.00 37.93 5.34
5279 5586 2.720758 CGTTGGCTTCTCTCACGCG 61.721 63.158 3.53 3.53 0.00 6.01
5280 5587 1.372997 GTTGGCTTCTCTCACGCGA 60.373 57.895 15.93 0.00 0.00 5.87
5281 5588 0.737715 GTTGGCTTCTCTCACGCGAT 60.738 55.000 15.93 0.00 0.00 4.58
5282 5589 0.737367 TTGGCTTCTCTCACGCGATG 60.737 55.000 15.93 7.85 0.00 3.84
5283 5590 1.880340 GGCTTCTCTCACGCGATGG 60.880 63.158 15.93 1.17 0.00 3.51
5284 5591 1.139734 GCTTCTCTCACGCGATGGA 59.860 57.895 15.93 6.40 0.00 3.41
5285 5592 0.869454 GCTTCTCTCACGCGATGGAG 60.869 60.000 15.93 16.59 0.00 3.86
5286 5593 0.869454 CTTCTCTCACGCGATGGAGC 60.869 60.000 15.93 0.00 0.00 4.70
5287 5594 1.315981 TTCTCTCACGCGATGGAGCT 61.316 55.000 15.93 0.00 34.40 4.09
5288 5595 1.140589 CTCTCACGCGATGGAGCTT 59.859 57.895 15.93 0.00 34.40 3.74
5289 5596 1.144565 CTCTCACGCGATGGAGCTTG 61.145 60.000 15.93 0.00 37.68 4.01
5290 5597 1.446792 CTCACGCGATGGAGCTTGT 60.447 57.895 15.93 0.00 37.60 3.16
5291 5598 1.416813 CTCACGCGATGGAGCTTGTC 61.417 60.000 15.93 0.00 37.60 3.18
5292 5599 1.737735 CACGCGATGGAGCTTGTCA 60.738 57.895 15.93 0.00 32.59 3.58
5293 5600 1.446792 ACGCGATGGAGCTTGTCAG 60.447 57.895 15.93 0.00 34.40 3.51
5304 5611 2.845019 CTTGTCAGCGATCAAGCCA 58.155 52.632 0.00 0.00 38.01 4.75
5305 5612 0.725686 CTTGTCAGCGATCAAGCCAG 59.274 55.000 0.00 0.00 38.01 4.85
5306 5613 0.035317 TTGTCAGCGATCAAGCCAGT 59.965 50.000 0.00 0.00 38.01 4.00
5307 5614 0.671472 TGTCAGCGATCAAGCCAGTG 60.671 55.000 0.00 0.00 38.01 3.66
5308 5615 1.078918 TCAGCGATCAAGCCAGTGG 60.079 57.895 4.20 4.20 38.01 4.00
5309 5616 1.078918 CAGCGATCAAGCCAGTGGA 60.079 57.895 15.20 0.00 38.01 4.02
5310 5617 0.674581 CAGCGATCAAGCCAGTGGAA 60.675 55.000 15.20 0.00 38.01 3.53
5311 5618 0.392193 AGCGATCAAGCCAGTGGAAG 60.392 55.000 15.20 0.96 38.01 3.46
5312 5619 0.674895 GCGATCAAGCCAGTGGAAGT 60.675 55.000 15.20 0.00 0.00 3.01
5313 5620 1.081892 CGATCAAGCCAGTGGAAGTG 58.918 55.000 15.20 7.10 36.90 3.16
5314 5621 0.807496 GATCAAGCCAGTGGAAGTGC 59.193 55.000 15.20 0.00 35.41 4.40
5315 5622 0.111061 ATCAAGCCAGTGGAAGTGCA 59.889 50.000 15.20 0.00 35.41 4.57
5316 5623 0.111061 TCAAGCCAGTGGAAGTGCAT 59.889 50.000 15.20 0.00 35.41 3.96
5317 5624 0.524862 CAAGCCAGTGGAAGTGCATC 59.475 55.000 15.20 0.00 35.41 3.91
5318 5625 0.111061 AAGCCAGTGGAAGTGCATCA 59.889 50.000 15.20 0.00 35.41 3.07
5319 5626 0.322277 AGCCAGTGGAAGTGCATCAG 60.322 55.000 15.20 0.00 35.41 2.90
5320 5627 0.321919 GCCAGTGGAAGTGCATCAGA 60.322 55.000 15.20 0.00 35.41 3.27
5321 5628 1.735386 CCAGTGGAAGTGCATCAGAG 58.265 55.000 1.68 0.00 35.41 3.35
5322 5629 1.678123 CCAGTGGAAGTGCATCAGAGG 60.678 57.143 1.68 0.00 35.41 3.69
5323 5630 1.277273 CAGTGGAAGTGCATCAGAGGA 59.723 52.381 0.00 0.00 0.00 3.71
5324 5631 1.554160 AGTGGAAGTGCATCAGAGGAG 59.446 52.381 0.00 0.00 0.00 3.69
5325 5632 0.251354 TGGAAGTGCATCAGAGGAGC 59.749 55.000 0.00 0.00 0.00 4.70
5326 5633 0.809241 GGAAGTGCATCAGAGGAGCG 60.809 60.000 0.00 0.00 0.00 5.03
5327 5634 1.427592 GAAGTGCATCAGAGGAGCGC 61.428 60.000 0.00 0.00 38.96 5.92
5328 5635 3.260483 GTGCATCAGAGGAGCGCG 61.260 66.667 0.00 0.00 0.00 6.86
5329 5636 3.451894 TGCATCAGAGGAGCGCGA 61.452 61.111 12.10 0.00 0.00 5.87
5330 5637 2.657944 GCATCAGAGGAGCGCGAG 60.658 66.667 12.10 0.00 0.00 5.03
5331 5638 3.114650 CATCAGAGGAGCGCGAGA 58.885 61.111 12.10 0.00 0.00 4.04
5332 5639 1.435105 CATCAGAGGAGCGCGAGAA 59.565 57.895 12.10 0.00 0.00 2.87
5333 5640 0.594540 CATCAGAGGAGCGCGAGAAG 60.595 60.000 12.10 0.00 0.00 2.85
5334 5641 1.034838 ATCAGAGGAGCGCGAGAAGT 61.035 55.000 12.10 0.00 0.00 3.01
5335 5642 1.214062 CAGAGGAGCGCGAGAAGTT 59.786 57.895 12.10 0.00 0.00 2.66
5336 5643 0.452184 CAGAGGAGCGCGAGAAGTTA 59.548 55.000 12.10 0.00 0.00 2.24
5337 5644 1.135373 CAGAGGAGCGCGAGAAGTTAA 60.135 52.381 12.10 0.00 0.00 2.01
5338 5645 1.751924 AGAGGAGCGCGAGAAGTTAAT 59.248 47.619 12.10 0.00 0.00 1.40
5339 5646 2.166664 AGAGGAGCGCGAGAAGTTAATT 59.833 45.455 12.10 0.00 0.00 1.40
5340 5647 2.536393 GAGGAGCGCGAGAAGTTAATTC 59.464 50.000 12.10 0.00 38.28 2.17
5341 5648 2.094182 AGGAGCGCGAGAAGTTAATTCA 60.094 45.455 12.10 0.00 40.67 2.57
5342 5649 2.671396 GGAGCGCGAGAAGTTAATTCAA 59.329 45.455 12.10 0.00 40.67 2.69
5343 5650 3.242123 GGAGCGCGAGAAGTTAATTCAAG 60.242 47.826 12.10 0.00 40.67 3.02
5344 5651 2.094417 AGCGCGAGAAGTTAATTCAAGC 59.906 45.455 12.10 0.00 40.67 4.01
5345 5652 2.159707 GCGCGAGAAGTTAATTCAAGCA 60.160 45.455 12.10 0.00 40.44 3.91
5346 5653 3.666902 GCGCGAGAAGTTAATTCAAGCAA 60.667 43.478 12.10 0.00 40.44 3.91
5347 5654 3.840763 CGCGAGAAGTTAATTCAAGCAAC 59.159 43.478 0.00 0.00 40.44 4.17
5348 5655 3.840763 GCGAGAAGTTAATTCAAGCAACG 59.159 43.478 7.10 0.00 40.67 4.10
5349 5656 4.394795 CGAGAAGTTAATTCAAGCAACGG 58.605 43.478 0.00 0.00 40.67 4.44
5350 5657 4.669197 CGAGAAGTTAATTCAAGCAACGGG 60.669 45.833 0.00 0.00 40.67 5.28
5351 5658 3.057526 AGAAGTTAATTCAAGCAACGGGC 60.058 43.478 0.00 0.00 40.67 6.13
5352 5659 1.544246 AGTTAATTCAAGCAACGGGCC 59.456 47.619 0.00 0.00 46.50 5.80
5353 5660 0.523966 TTAATTCAAGCAACGGGCCG 59.476 50.000 27.06 27.06 46.50 6.13
5354 5661 1.309499 TAATTCAAGCAACGGGCCGG 61.309 55.000 31.78 14.80 46.50 6.13
5369 5676 4.366684 CGGCCCAAAAGGGAGCCT 62.367 66.667 4.37 0.00 45.64 4.58
5370 5677 2.363018 GGCCCAAAAGGGAGCCTC 60.363 66.667 4.37 0.00 44.88 4.70
5371 5678 2.751837 GCCCAAAAGGGAGCCTCG 60.752 66.667 4.37 0.00 40.01 4.63
5372 5679 2.757077 CCCAAAAGGGAGCCTCGT 59.243 61.111 0.00 0.00 40.01 4.18
5373 5680 1.074951 CCCAAAAGGGAGCCTCGTT 59.925 57.895 0.00 0.00 40.01 3.85
5374 5681 0.539669 CCCAAAAGGGAGCCTCGTTT 60.540 55.000 0.00 0.00 40.01 3.60
5375 5682 1.271707 CCCAAAAGGGAGCCTCGTTTA 60.272 52.381 0.00 0.00 40.01 2.01
5376 5683 1.810755 CCAAAAGGGAGCCTCGTTTAC 59.189 52.381 0.00 0.00 40.01 2.01
5377 5684 1.810755 CAAAAGGGAGCCTCGTTTACC 59.189 52.381 0.00 0.00 30.89 2.85
5378 5685 1.061546 AAAGGGAGCCTCGTTTACCA 58.938 50.000 0.00 0.00 30.89 3.25
5379 5686 0.613777 AAGGGAGCCTCGTTTACCAG 59.386 55.000 0.00 0.00 30.89 4.00
5380 5687 1.449778 GGGAGCCTCGTTTACCAGC 60.450 63.158 0.00 0.00 0.00 4.85
5381 5688 1.597461 GGAGCCTCGTTTACCAGCT 59.403 57.895 0.00 0.00 36.25 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.460284 CACCCGAGACCCAAAGATCG 60.460 60.000 0.00 0.00 35.02 3.69
93 94 9.803315 AAGGAGTTTCTGAAATTTTTGACTAAC 57.197 29.630 6.06 0.00 0.00 2.34
149 150 0.299300 TTCGCGAAACTTGTCACACG 59.701 50.000 21.14 0.00 0.00 4.49
192 193 6.560711 AGTGTCGATTTTGTTTTGTTTAGCT 58.439 32.000 0.00 0.00 0.00 3.32
260 261 5.079397 AGTTTAGCGAAAAAGTGACTTCG 57.921 39.130 0.00 0.00 45.58 3.79
290 291 8.447924 ACGAGAATCTTGTAGCTATACTTGTA 57.552 34.615 0.33 0.00 32.75 2.41
292 293 7.644490 AGACGAGAATCTTGTAGCTATACTTG 58.356 38.462 2.61 0.00 32.75 3.16
293 294 7.040961 GGAGACGAGAATCTTGTAGCTATACTT 60.041 40.741 2.61 0.00 32.75 2.24
294 295 6.428771 GGAGACGAGAATCTTGTAGCTATACT 59.571 42.308 2.61 0.00 32.75 2.12
295 296 6.604930 GGAGACGAGAATCTTGTAGCTATAC 58.395 44.000 2.61 0.00 0.00 1.47
379 380 2.482721 GTCTTGTGTCCCATTACAACCG 59.517 50.000 0.00 0.00 33.60 4.44
400 401 1.831652 GCCCGGAGATACCTGATGGG 61.832 65.000 0.73 0.00 38.23 4.00
405 406 3.485463 TTTAATGCCCGGAGATACCTG 57.515 47.619 0.73 0.00 36.31 4.00
412 413 5.299279 ACATATGTCTTTTTAATGCCCGGAG 59.701 40.000 0.73 0.00 0.00 4.63
435 439 9.915629 CATACAGGAGAACCTTATTAGTGATAC 57.084 37.037 0.00 0.00 45.36 2.24
438 442 7.618117 TGTCATACAGGAGAACCTTATTAGTGA 59.382 37.037 0.00 0.00 45.36 3.41
543 547 9.574458 CTGAAAATATATGAGGATATTCGTCGT 57.426 33.333 0.00 0.00 34.26 4.34
544 548 9.574458 ACTGAAAATATATGAGGATATTCGTCG 57.426 33.333 0.00 0.00 34.26 5.12
739 744 1.486726 GTGGGGAGGTGGATTAGACTG 59.513 57.143 0.00 0.00 0.00 3.51
768 773 2.289444 GCTGACCCTGTGTAAACAGCTA 60.289 50.000 7.61 0.00 44.51 3.32
900 905 0.468958 TTGGCTTGGCTTGGCTTGTA 60.469 50.000 5.64 0.00 0.00 2.41
901 906 1.123246 ATTGGCTTGGCTTGGCTTGT 61.123 50.000 5.64 0.00 0.00 3.16
902 907 0.390735 GATTGGCTTGGCTTGGCTTG 60.391 55.000 5.64 0.00 0.00 4.01
903 908 1.547472 GGATTGGCTTGGCTTGGCTT 61.547 55.000 5.64 0.00 0.00 4.35
904 909 1.986210 GGATTGGCTTGGCTTGGCT 60.986 57.895 5.64 0.00 0.00 4.75
905 910 1.829523 TTGGATTGGCTTGGCTTGGC 61.830 55.000 0.00 0.00 0.00 4.52
906 911 0.248289 CTTGGATTGGCTTGGCTTGG 59.752 55.000 0.00 0.00 0.00 3.61
907 912 0.390735 GCTTGGATTGGCTTGGCTTG 60.391 55.000 0.00 0.00 0.00 4.01
920 925 2.180276 GGTACTCTTCTCTGGCTTGGA 58.820 52.381 0.00 0.00 0.00 3.53
937 947 1.682451 GCATCCACCTACGCCTGGTA 61.682 60.000 0.00 0.00 35.80 3.25
989 999 2.203266 GCTCCATGTGGCTAGGGC 60.203 66.667 0.00 0.00 37.82 5.19
1321 1333 3.365265 CCGTGCAAACTCAGGCCC 61.365 66.667 0.00 0.00 0.00 5.80
1637 1652 4.518249 GTCCAAATTTGTCCCAAAAACCA 58.482 39.130 16.73 0.00 0.00 3.67
1644 1659 0.178975 AGCCGTCCAAATTTGTCCCA 60.179 50.000 16.73 0.00 0.00 4.37
1844 1863 6.644592 TCAACAACACAAAGAAGGAAACAAAG 59.355 34.615 0.00 0.00 0.00 2.77
1856 1875 3.243068 GGCTGGTAGTCAACAACACAAAG 60.243 47.826 0.00 0.00 0.00 2.77
1881 1900 4.685628 CACATGCAACATTTCCCTAAACAC 59.314 41.667 0.00 0.00 0.00 3.32
2388 2445 2.561478 TTTCAGAAAGGGGAAGACCG 57.439 50.000 0.00 0.00 41.60 4.79
2590 2652 3.833442 TGAAGCAGTGTGTACGTATCAG 58.167 45.455 0.00 0.00 0.00 2.90
2653 2715 3.940209 TGATGCCAATTCTGGTTCAAC 57.060 42.857 0.00 0.00 45.53 3.18
3084 3160 7.290813 ACCAGCTGACCATATATCTATCGATA 58.709 38.462 17.39 4.78 36.61 2.92
3872 3948 9.361315 TGACAAATGTACACTACACACATATAC 57.639 33.333 0.00 0.00 42.23 1.47
3873 3949 9.930693 TTGACAAATGTACACTACACACATATA 57.069 29.630 0.00 0.00 42.23 0.86
3874 3950 8.840833 TTGACAAATGTACACTACACACATAT 57.159 30.769 0.00 0.00 42.23 1.78
3875 3951 8.552865 GTTTGACAAATGTACACTACACACATA 58.447 33.333 3.49 0.00 42.23 2.29
3876 3952 7.282224 AGTTTGACAAATGTACACTACACACAT 59.718 33.333 3.49 0.00 42.23 3.21
3877 3953 6.596106 AGTTTGACAAATGTACACTACACACA 59.404 34.615 3.49 0.00 42.23 3.72
3878 3954 7.011828 AGTTTGACAAATGTACACTACACAC 57.988 36.000 3.49 0.00 42.23 3.82
3879 3955 8.198778 TCTAGTTTGACAAATGTACACTACACA 58.801 33.333 3.49 0.00 42.23 3.72
3880 3956 8.583810 TCTAGTTTGACAAATGTACACTACAC 57.416 34.615 3.49 0.00 42.23 2.90
3881 3957 9.772973 AATCTAGTTTGACAAATGTACACTACA 57.227 29.630 3.49 0.00 43.80 2.74
3915 3991 9.029368 TGATTATGATGGTCATAGAAGACTAGG 57.971 37.037 0.00 0.00 40.13 3.02
4051 4355 1.268488 GCACGCGGATATTCAAATGCA 60.268 47.619 12.47 0.00 0.00 3.96
4273 4577 4.396522 TGGCCAGCTGCAAAAATAAAAAT 58.603 34.783 8.66 0.00 43.89 1.82
4276 4580 3.482156 TTGGCCAGCTGCAAAAATAAA 57.518 38.095 8.66 0.00 43.89 1.40
4277 4581 3.336468 CATTGGCCAGCTGCAAAAATAA 58.664 40.909 8.66 0.00 43.89 1.40
4278 4582 2.936114 GCATTGGCCAGCTGCAAAAATA 60.936 45.455 28.14 2.85 43.89 1.40
4279 4583 1.816074 CATTGGCCAGCTGCAAAAAT 58.184 45.000 8.66 2.33 43.89 1.82
4521 4825 4.995124 TCTAGACAGTTGTTATTCCTCGC 58.005 43.478 0.00 0.00 0.00 5.03
4638 4942 6.051717 AGCCACAGTACATTAAGAAGCTATG 58.948 40.000 0.00 0.00 0.00 2.23
4682 4989 0.790207 CCGTCAGTGAATGGTGAACG 59.210 55.000 0.00 0.00 0.00 3.95
4687 4994 3.486383 ACAATTTCCGTCAGTGAATGGT 58.514 40.909 11.39 0.00 0.00 3.55
4701 5008 4.976116 AGCGAAGTTTACAGCAACAATTTC 59.024 37.500 0.00 0.00 0.00 2.17
4712 5019 6.854496 ACTTATTGAACAGCGAAGTTTACA 57.146 33.333 0.00 0.00 0.00 2.41
4762 5069 2.801342 GCTAGACTACATGACAGGCAGC 60.801 54.545 0.00 6.65 0.00 5.25
4821 5128 2.830104 TCAATCATGCCATCTCACGAG 58.170 47.619 0.00 0.00 0.00 4.18
4822 5129 2.938451 GTTCAATCATGCCATCTCACGA 59.062 45.455 0.00 0.00 0.00 4.35
4823 5130 2.941064 AGTTCAATCATGCCATCTCACG 59.059 45.455 0.00 0.00 0.00 4.35
4824 5131 3.066342 CCAGTTCAATCATGCCATCTCAC 59.934 47.826 0.00 0.00 0.00 3.51
4825 5132 3.054213 TCCAGTTCAATCATGCCATCTCA 60.054 43.478 0.00 0.00 0.00 3.27
4826 5133 3.548770 TCCAGTTCAATCATGCCATCTC 58.451 45.455 0.00 0.00 0.00 2.75
4827 5134 3.657398 TCCAGTTCAATCATGCCATCT 57.343 42.857 0.00 0.00 0.00 2.90
4934 5241 3.767131 GCAATTTAAGCCTCCCCTGTTTA 59.233 43.478 0.00 0.00 0.00 2.01
5012 5319 3.283751 TCAGTTCGCTTTCCCTCAAAAA 58.716 40.909 0.00 0.00 0.00 1.94
5013 5320 2.925724 TCAGTTCGCTTTCCCTCAAAA 58.074 42.857 0.00 0.00 0.00 2.44
5014 5321 2.631160 TCAGTTCGCTTTCCCTCAAA 57.369 45.000 0.00 0.00 0.00 2.69
5015 5322 2.859165 ATCAGTTCGCTTTCCCTCAA 57.141 45.000 0.00 0.00 0.00 3.02
5016 5323 2.565391 TGTATCAGTTCGCTTTCCCTCA 59.435 45.455 0.00 0.00 0.00 3.86
5017 5324 3.247006 TGTATCAGTTCGCTTTCCCTC 57.753 47.619 0.00 0.00 0.00 4.30
5018 5325 3.695830 TTGTATCAGTTCGCTTTCCCT 57.304 42.857 0.00 0.00 0.00 4.20
5019 5326 6.619801 ATTATTGTATCAGTTCGCTTTCCC 57.380 37.500 0.00 0.00 0.00 3.97
5020 5327 9.651718 CTTTATTATTGTATCAGTTCGCTTTCC 57.348 33.333 0.00 0.00 0.00 3.13
5023 5330 9.988350 CAACTTTATTATTGTATCAGTTCGCTT 57.012 29.630 0.00 0.00 0.00 4.68
5024 5331 9.162764 ACAACTTTATTATTGTATCAGTTCGCT 57.837 29.630 0.00 0.00 37.27 4.93
5040 5347 9.933723 ATGTCTTAACCGTAGTACAACTTTATT 57.066 29.630 0.38 0.00 0.00 1.40
5041 5348 9.933723 AATGTCTTAACCGTAGTACAACTTTAT 57.066 29.630 0.38 0.00 0.00 1.40
5042 5349 9.762933 AAATGTCTTAACCGTAGTACAACTTTA 57.237 29.630 0.38 0.00 0.00 1.85
5043 5350 8.667076 AAATGTCTTAACCGTAGTACAACTTT 57.333 30.769 0.38 0.00 0.00 2.66
5044 5351 9.415544 CTAAATGTCTTAACCGTAGTACAACTT 57.584 33.333 0.38 0.00 0.00 2.66
5045 5352 8.031277 CCTAAATGTCTTAACCGTAGTACAACT 58.969 37.037 0.38 0.00 0.00 3.16
5046 5353 7.201470 GCCTAAATGTCTTAACCGTAGTACAAC 60.201 40.741 0.38 0.00 0.00 3.32
5047 5354 6.813152 GCCTAAATGTCTTAACCGTAGTACAA 59.187 38.462 0.38 0.00 0.00 2.41
5048 5355 6.332630 GCCTAAATGTCTTAACCGTAGTACA 58.667 40.000 0.38 0.00 0.00 2.90
5049 5356 5.750547 GGCCTAAATGTCTTAACCGTAGTAC 59.249 44.000 0.00 0.00 0.00 2.73
5050 5357 5.658190 AGGCCTAAATGTCTTAACCGTAGTA 59.342 40.000 1.29 0.00 0.00 1.82
5051 5358 4.468868 AGGCCTAAATGTCTTAACCGTAGT 59.531 41.667 1.29 0.00 0.00 2.73
5052 5359 5.019785 AGGCCTAAATGTCTTAACCGTAG 57.980 43.478 1.29 0.00 0.00 3.51
5053 5360 4.440525 CGAGGCCTAAATGTCTTAACCGTA 60.441 45.833 4.42 0.00 0.00 4.02
5054 5361 3.677976 CGAGGCCTAAATGTCTTAACCGT 60.678 47.826 4.42 0.00 0.00 4.83
5055 5362 2.864343 CGAGGCCTAAATGTCTTAACCG 59.136 50.000 4.42 0.00 0.00 4.44
5056 5363 3.870274 ACGAGGCCTAAATGTCTTAACC 58.130 45.455 4.42 0.00 0.00 2.85
5057 5364 5.391629 CCAAACGAGGCCTAAATGTCTTAAC 60.392 44.000 4.42 0.00 0.00 2.01
5058 5365 4.698304 CCAAACGAGGCCTAAATGTCTTAA 59.302 41.667 4.42 0.00 0.00 1.85
5059 5366 4.258543 CCAAACGAGGCCTAAATGTCTTA 58.741 43.478 4.42 0.00 0.00 2.10
5060 5367 3.081804 CCAAACGAGGCCTAAATGTCTT 58.918 45.455 4.42 0.00 0.00 3.01
5061 5368 2.039879 ACCAAACGAGGCCTAAATGTCT 59.960 45.455 4.42 0.00 0.00 3.41
5062 5369 2.433436 ACCAAACGAGGCCTAAATGTC 58.567 47.619 4.42 0.00 0.00 3.06
5063 5370 2.579410 ACCAAACGAGGCCTAAATGT 57.421 45.000 4.42 0.00 0.00 2.71
5064 5371 4.036380 GGATAACCAAACGAGGCCTAAATG 59.964 45.833 4.42 2.40 35.97 2.32
5065 5372 4.204799 GGATAACCAAACGAGGCCTAAAT 58.795 43.478 4.42 0.00 35.97 1.40
5066 5373 3.613030 GGATAACCAAACGAGGCCTAAA 58.387 45.455 4.42 0.00 35.97 1.85
5067 5374 2.419021 CGGATAACCAAACGAGGCCTAA 60.419 50.000 4.42 0.00 35.59 2.69
5068 5375 1.137479 CGGATAACCAAACGAGGCCTA 59.863 52.381 4.42 0.00 35.59 3.93
5069 5376 0.107848 CGGATAACCAAACGAGGCCT 60.108 55.000 3.86 3.86 35.59 5.19
5070 5377 0.108041 TCGGATAACCAAACGAGGCC 60.108 55.000 0.00 0.00 35.59 5.19
5071 5378 1.287425 CTCGGATAACCAAACGAGGC 58.713 55.000 0.00 0.00 46.44 4.70
5074 5381 2.101917 GGGATCTCGGATAACCAAACGA 59.898 50.000 0.00 0.00 35.59 3.85
5075 5382 2.480845 GGGATCTCGGATAACCAAACG 58.519 52.381 0.00 0.00 35.59 3.60
5076 5383 2.480845 CGGGATCTCGGATAACCAAAC 58.519 52.381 7.23 0.00 35.59 2.93
5077 5384 2.902705 CGGGATCTCGGATAACCAAA 57.097 50.000 7.23 0.00 35.59 3.28
5099 5406 1.070957 GGATTTCGACGGGGATCCC 59.929 63.158 23.95 23.95 41.09 3.85
5100 5407 0.249911 CTGGATTTCGACGGGGATCC 60.250 60.000 1.92 1.92 38.80 3.36
5101 5408 0.249911 CCTGGATTTCGACGGGGATC 60.250 60.000 0.00 0.00 0.00 3.36
5102 5409 1.830145 CCTGGATTTCGACGGGGAT 59.170 57.895 0.00 0.00 0.00 3.85
5103 5410 3.305314 CCTGGATTTCGACGGGGA 58.695 61.111 0.00 0.00 0.00 4.81
5104 5411 2.189521 CCCTGGATTTCGACGGGG 59.810 66.667 3.41 3.41 46.28 5.73
5105 5412 2.513897 GCCCTGGATTTCGACGGG 60.514 66.667 0.00 0.00 37.97 5.28
5106 5413 2.890474 CGCCCTGGATTTCGACGG 60.890 66.667 0.00 0.00 0.00 4.79
5107 5414 3.564027 GCGCCCTGGATTTCGACG 61.564 66.667 0.00 0.00 0.00 5.12
5108 5415 1.819632 ATGCGCCCTGGATTTCGAC 60.820 57.895 4.18 0.00 0.00 4.20
5109 5416 1.819208 CATGCGCCCTGGATTTCGA 60.819 57.895 4.18 0.00 0.00 3.71
5110 5417 2.717485 CATGCGCCCTGGATTTCG 59.283 61.111 4.18 0.00 0.00 3.46
5111 5418 3.122850 CCATGCGCCCTGGATTTC 58.877 61.111 18.63 0.00 35.70 2.17
5112 5419 3.149648 GCCATGCGCCCTGGATTT 61.150 61.111 25.49 0.00 35.70 2.17
5137 5444 1.452145 TTTTCCACGGGCTGAGTTGC 61.452 55.000 0.00 0.00 0.00 4.17
5138 5445 0.310854 GTTTTCCACGGGCTGAGTTG 59.689 55.000 0.00 0.00 0.00 3.16
5139 5446 1.164041 CGTTTTCCACGGGCTGAGTT 61.164 55.000 0.00 0.00 45.89 3.01
5140 5447 1.597027 CGTTTTCCACGGGCTGAGT 60.597 57.895 0.00 0.00 45.89 3.41
5141 5448 3.253955 CGTTTTCCACGGGCTGAG 58.746 61.111 0.00 0.00 45.89 3.35
5149 5456 0.928229 ATAGCGCGATCGTTTTCCAC 59.072 50.000 17.81 0.00 38.14 4.02
5150 5457 1.647346 AATAGCGCGATCGTTTTCCA 58.353 45.000 17.81 0.00 38.14 3.53
5151 5458 2.363220 CAAATAGCGCGATCGTTTTCC 58.637 47.619 17.81 0.00 38.14 3.13
5152 5459 2.222953 ACCAAATAGCGCGATCGTTTTC 60.223 45.455 17.81 3.61 38.14 2.29
5153 5460 1.735571 ACCAAATAGCGCGATCGTTTT 59.264 42.857 17.81 1.62 38.14 2.43
5154 5461 1.326548 GACCAAATAGCGCGATCGTTT 59.673 47.619 17.81 6.00 38.14 3.60
5155 5462 0.928229 GACCAAATAGCGCGATCGTT 59.072 50.000 17.81 0.00 38.14 3.85
5156 5463 1.206745 CGACCAAATAGCGCGATCGT 61.207 55.000 17.81 0.41 38.14 3.73
5157 5464 1.482955 CGACCAAATAGCGCGATCG 59.517 57.895 12.10 11.69 39.07 3.69
5158 5465 1.201825 GCGACCAAATAGCGCGATC 59.798 57.895 12.10 0.00 41.37 3.69
5159 5466 3.319904 GCGACCAAATAGCGCGAT 58.680 55.556 12.10 5.99 41.37 4.58
5163 5470 0.647410 CAGTGAGCGACCAAATAGCG 59.353 55.000 0.00 0.00 33.43 4.26
5164 5471 0.375106 GCAGTGAGCGACCAAATAGC 59.625 55.000 0.00 0.00 0.00 2.97
5175 5482 3.553095 AAACCCTCCGGCAGTGAGC 62.553 63.158 0.00 0.00 44.65 4.26
5176 5483 0.955919 GAAAACCCTCCGGCAGTGAG 60.956 60.000 0.00 0.00 0.00 3.51
5177 5484 1.072505 GAAAACCCTCCGGCAGTGA 59.927 57.895 0.00 0.00 0.00 3.41
5178 5485 1.073199 AGAAAACCCTCCGGCAGTG 59.927 57.895 0.00 0.00 0.00 3.66
5179 5486 1.073199 CAGAAAACCCTCCGGCAGT 59.927 57.895 0.00 0.00 0.00 4.40
5180 5487 1.675641 CCAGAAAACCCTCCGGCAG 60.676 63.158 0.00 0.00 0.00 4.85
5181 5488 2.434331 CCAGAAAACCCTCCGGCA 59.566 61.111 0.00 0.00 0.00 5.69
5182 5489 3.062466 GCCAGAAAACCCTCCGGC 61.062 66.667 0.00 0.00 0.00 6.13
5183 5490 2.361230 GGCCAGAAAACCCTCCGG 60.361 66.667 0.00 0.00 0.00 5.14
5184 5491 2.361230 GGGCCAGAAAACCCTCCG 60.361 66.667 4.39 0.00 43.36 4.63
5185 5492 2.211468 ATCGGGCCAGAAAACCCTCC 62.211 60.000 10.42 0.00 44.63 4.30
5186 5493 0.748367 GATCGGGCCAGAAAACCCTC 60.748 60.000 10.42 0.00 44.63 4.30
5187 5494 1.303282 GATCGGGCCAGAAAACCCT 59.697 57.895 10.42 0.00 44.63 4.34
5188 5495 1.753078 GGATCGGGCCAGAAAACCC 60.753 63.158 10.42 5.50 43.25 4.11
5189 5496 1.001393 TGGATCGGGCCAGAAAACC 60.001 57.895 10.42 13.97 33.10 3.27
5190 5497 1.644786 CGTGGATCGGGCCAGAAAAC 61.645 60.000 10.42 7.71 38.95 2.43
5191 5498 1.376683 CGTGGATCGGGCCAGAAAA 60.377 57.895 10.42 0.00 38.95 2.29
5192 5499 2.267642 CGTGGATCGGGCCAGAAA 59.732 61.111 10.42 0.00 38.95 2.52
5193 5500 3.000819 ACGTGGATCGGGCCAGAA 61.001 61.111 10.42 0.00 44.69 3.02
5194 5501 3.458163 GACGTGGATCGGGCCAGA 61.458 66.667 8.42 8.42 44.69 3.86
5195 5502 4.873129 CGACGTGGATCGGGCCAG 62.873 72.222 4.39 0.00 44.69 4.85
5197 5504 3.945304 AAACGACGTGGATCGGGCC 62.945 63.158 3.97 0.00 46.56 5.80
5198 5505 2.433664 AAACGACGTGGATCGGGC 60.434 61.111 3.97 0.00 46.56 6.13
5199 5506 1.808390 GGAAACGACGTGGATCGGG 60.808 63.158 3.97 0.00 46.56 5.14
5200 5507 1.808390 GGGAAACGACGTGGATCGG 60.808 63.158 3.97 0.00 46.56 4.18
5202 5509 0.739813 CCAGGGAAACGACGTGGATC 60.740 60.000 3.97 0.40 44.45 3.36
5203 5510 1.295423 CCAGGGAAACGACGTGGAT 59.705 57.895 3.97 0.00 44.45 3.41
5204 5511 2.738480 CCAGGGAAACGACGTGGA 59.262 61.111 3.97 0.00 44.45 4.02
5205 5512 2.358247 CCCAGGGAAACGACGTGG 60.358 66.667 0.00 0.00 42.08 4.94
5206 5513 1.374252 CTCCCAGGGAAACGACGTG 60.374 63.158 10.32 0.00 0.00 4.49
5207 5514 1.532316 TCTCCCAGGGAAACGACGT 60.532 57.895 10.32 0.00 0.00 4.34
5208 5515 1.215647 CTCTCCCAGGGAAACGACG 59.784 63.158 10.32 0.00 0.00 5.12
5209 5516 1.079057 GCTCTCCCAGGGAAACGAC 60.079 63.158 10.32 0.00 0.00 4.34
5210 5517 1.125093 TTGCTCTCCCAGGGAAACGA 61.125 55.000 10.32 2.39 0.00 3.85
5211 5518 0.035056 ATTGCTCTCCCAGGGAAACG 60.035 55.000 10.32 0.00 0.00 3.60
5212 5519 1.683319 GGATTGCTCTCCCAGGGAAAC 60.683 57.143 10.32 2.18 0.00 2.78
5213 5520 0.625849 GGATTGCTCTCCCAGGGAAA 59.374 55.000 10.32 0.46 0.00 3.13
5214 5521 0.549902 TGGATTGCTCTCCCAGGGAA 60.550 55.000 10.32 0.00 34.12 3.97
5215 5522 0.327867 ATGGATTGCTCTCCCAGGGA 60.328 55.000 8.35 8.35 34.12 4.20
5216 5523 0.178998 CATGGATTGCTCTCCCAGGG 60.179 60.000 0.00 0.00 34.12 4.45
5217 5524 0.178998 CCATGGATTGCTCTCCCAGG 60.179 60.000 5.56 0.00 34.12 4.45
5218 5525 0.822532 GCCATGGATTGCTCTCCCAG 60.823 60.000 18.40 0.00 34.12 4.45
5219 5526 1.228228 GCCATGGATTGCTCTCCCA 59.772 57.895 18.40 0.00 34.12 4.37
5220 5527 1.535685 AGCCATGGATTGCTCTCCC 59.464 57.895 18.40 0.00 34.12 4.30
5225 5532 1.147824 CCTCGAGCCATGGATTGCT 59.852 57.895 18.40 4.61 41.42 3.91
5226 5533 1.895707 CCCTCGAGCCATGGATTGC 60.896 63.158 18.40 0.00 0.00 3.56
5227 5534 1.228063 CCCCTCGAGCCATGGATTG 60.228 63.158 18.40 14.59 0.00 2.67
5228 5535 1.694169 ACCCCTCGAGCCATGGATT 60.694 57.895 18.40 1.53 0.00 3.01
5229 5536 2.040464 ACCCCTCGAGCCATGGAT 60.040 61.111 18.40 10.08 0.00 3.41
5230 5537 3.083349 CACCCCTCGAGCCATGGA 61.083 66.667 18.40 0.00 0.00 3.41
5231 5538 4.181010 CCACCCCTCGAGCCATGG 62.181 72.222 7.63 7.63 0.00 3.66
5232 5539 3.083349 TCCACCCCTCGAGCCATG 61.083 66.667 6.99 3.99 0.00 3.66
5233 5540 2.765807 CTCCACCCCTCGAGCCAT 60.766 66.667 6.99 0.00 0.00 4.40
5234 5541 3.539593 TTCTCCACCCCTCGAGCCA 62.540 63.158 6.99 0.00 0.00 4.75
5235 5542 1.838073 TTTTCTCCACCCCTCGAGCC 61.838 60.000 6.99 0.00 0.00 4.70
5236 5543 0.253327 ATTTTCTCCACCCCTCGAGC 59.747 55.000 6.99 0.00 0.00 5.03
5237 5544 1.134371 GGATTTTCTCCACCCCTCGAG 60.134 57.143 5.13 5.13 44.26 4.04
5238 5545 0.909623 GGATTTTCTCCACCCCTCGA 59.090 55.000 0.00 0.00 44.26 4.04
5239 5546 3.478540 GGATTTTCTCCACCCCTCG 57.521 57.895 0.00 0.00 44.26 4.63
5260 5567 3.016474 GCGTGAGAGAAGCCAACGC 62.016 63.158 2.56 2.56 37.93 4.84
5261 5568 2.720758 CGCGTGAGAGAAGCCAACG 61.721 63.158 0.00 0.00 0.00 4.10
5262 5569 0.737715 ATCGCGTGAGAGAAGCCAAC 60.738 55.000 5.77 0.00 44.84 3.77
5263 5570 0.737367 CATCGCGTGAGAGAAGCCAA 60.737 55.000 5.77 0.00 44.84 4.52
5264 5571 1.153765 CATCGCGTGAGAGAAGCCA 60.154 57.895 5.77 0.00 44.84 4.75
5265 5572 1.880340 CCATCGCGTGAGAGAAGCC 60.880 63.158 5.77 0.00 44.84 4.35
5266 5573 0.869454 CTCCATCGCGTGAGAGAAGC 60.869 60.000 5.77 0.00 44.84 3.86
5267 5574 0.869454 GCTCCATCGCGTGAGAGAAG 60.869 60.000 21.18 7.52 44.84 2.85
5268 5575 1.139734 GCTCCATCGCGTGAGAGAA 59.860 57.895 21.18 0.00 44.84 2.87
5269 5576 1.315981 AAGCTCCATCGCGTGAGAGA 61.316 55.000 21.18 9.42 46.00 3.10
5270 5577 1.140589 AAGCTCCATCGCGTGAGAG 59.859 57.895 21.18 17.98 34.40 3.20
5271 5578 1.153765 CAAGCTCCATCGCGTGAGA 60.154 57.895 21.18 9.99 41.02 3.27
5272 5579 1.416813 GACAAGCTCCATCGCGTGAG 61.417 60.000 5.77 12.06 41.02 3.51
5273 5580 1.446099 GACAAGCTCCATCGCGTGA 60.446 57.895 5.77 0.00 41.02 4.35
5274 5581 1.690283 CTGACAAGCTCCATCGCGTG 61.690 60.000 5.77 3.64 43.53 5.34
5275 5582 1.446792 CTGACAAGCTCCATCGCGT 60.447 57.895 5.77 0.00 34.40 6.01
5276 5583 2.806856 GCTGACAAGCTCCATCGCG 61.807 63.158 0.00 0.00 46.60 5.87
5277 5584 3.096791 GCTGACAAGCTCCATCGC 58.903 61.111 0.00 0.00 46.60 4.58
5286 5593 0.725686 CTGGCTTGATCGCTGACAAG 59.274 55.000 0.00 0.00 44.05 3.16
5287 5594 0.035317 ACTGGCTTGATCGCTGACAA 59.965 50.000 0.00 0.00 0.00 3.18
5288 5595 0.671472 CACTGGCTTGATCGCTGACA 60.671 55.000 0.00 0.00 0.00 3.58
5289 5596 1.364626 CCACTGGCTTGATCGCTGAC 61.365 60.000 0.00 0.00 0.00 3.51
5290 5597 1.078918 CCACTGGCTTGATCGCTGA 60.079 57.895 0.00 0.00 0.00 4.26
5291 5598 0.674581 TTCCACTGGCTTGATCGCTG 60.675 55.000 0.00 0.00 0.00 5.18
5292 5599 0.392193 CTTCCACTGGCTTGATCGCT 60.392 55.000 0.00 0.00 0.00 4.93
5293 5600 0.674895 ACTTCCACTGGCTTGATCGC 60.675 55.000 0.00 0.00 0.00 4.58
5294 5601 1.081892 CACTTCCACTGGCTTGATCG 58.918 55.000 0.00 0.00 0.00 3.69
5295 5602 0.807496 GCACTTCCACTGGCTTGATC 59.193 55.000 0.00 0.00 0.00 2.92
5296 5603 0.111061 TGCACTTCCACTGGCTTGAT 59.889 50.000 0.00 0.00 0.00 2.57
5297 5604 0.111061 ATGCACTTCCACTGGCTTGA 59.889 50.000 0.00 0.00 0.00 3.02
5298 5605 0.524862 GATGCACTTCCACTGGCTTG 59.475 55.000 0.00 0.00 0.00 4.01
5299 5606 0.111061 TGATGCACTTCCACTGGCTT 59.889 50.000 0.00 0.00 0.00 4.35
5300 5607 0.322277 CTGATGCACTTCCACTGGCT 60.322 55.000 0.00 0.00 0.00 4.75
5301 5608 0.321919 TCTGATGCACTTCCACTGGC 60.322 55.000 0.00 0.00 0.00 4.85
5302 5609 1.678123 CCTCTGATGCACTTCCACTGG 60.678 57.143 0.00 0.00 0.00 4.00
5303 5610 1.277273 TCCTCTGATGCACTTCCACTG 59.723 52.381 0.00 0.00 0.00 3.66
5304 5611 1.554160 CTCCTCTGATGCACTTCCACT 59.446 52.381 0.00 0.00 0.00 4.00
5305 5612 2.011046 GCTCCTCTGATGCACTTCCAC 61.011 57.143 0.00 0.00 0.00 4.02
5306 5613 0.251354 GCTCCTCTGATGCACTTCCA 59.749 55.000 0.00 0.00 0.00 3.53
5307 5614 0.809241 CGCTCCTCTGATGCACTTCC 60.809 60.000 0.00 0.00 0.00 3.46
5308 5615 1.427592 GCGCTCCTCTGATGCACTTC 61.428 60.000 0.00 0.00 0.00 3.01
5309 5616 1.449246 GCGCTCCTCTGATGCACTT 60.449 57.895 0.00 0.00 0.00 3.16
5310 5617 2.186384 GCGCTCCTCTGATGCACT 59.814 61.111 0.00 0.00 0.00 4.40
5311 5618 3.260483 CGCGCTCCTCTGATGCAC 61.260 66.667 5.56 0.00 0.00 4.57
5312 5619 3.421687 CTCGCGCTCCTCTGATGCA 62.422 63.158 5.56 0.00 0.00 3.96
5313 5620 2.619840 TTCTCGCGCTCCTCTGATGC 62.620 60.000 5.56 0.00 0.00 3.91
5314 5621 0.594540 CTTCTCGCGCTCCTCTGATG 60.595 60.000 5.56 0.00 0.00 3.07
5315 5622 1.034838 ACTTCTCGCGCTCCTCTGAT 61.035 55.000 5.56 0.00 0.00 2.90
5316 5623 1.244697 AACTTCTCGCGCTCCTCTGA 61.245 55.000 5.56 0.00 0.00 3.27
5317 5624 0.452184 TAACTTCTCGCGCTCCTCTG 59.548 55.000 5.56 0.00 0.00 3.35
5318 5625 1.174783 TTAACTTCTCGCGCTCCTCT 58.825 50.000 5.56 0.00 0.00 3.69
5319 5626 2.211353 ATTAACTTCTCGCGCTCCTC 57.789 50.000 5.56 0.00 0.00 3.71
5320 5627 2.094182 TGAATTAACTTCTCGCGCTCCT 60.094 45.455 5.56 0.00 34.75 3.69
5321 5628 2.268298 TGAATTAACTTCTCGCGCTCC 58.732 47.619 5.56 0.00 34.75 4.70
5322 5629 3.782574 GCTTGAATTAACTTCTCGCGCTC 60.783 47.826 5.56 0.00 34.75 5.03
5323 5630 2.094417 GCTTGAATTAACTTCTCGCGCT 59.906 45.455 5.56 0.00 34.75 5.92
5324 5631 2.159707 TGCTTGAATTAACTTCTCGCGC 60.160 45.455 0.00 0.00 34.54 6.86
5325 5632 3.722555 TGCTTGAATTAACTTCTCGCG 57.277 42.857 0.00 0.00 34.54 5.87
5326 5633 3.840763 CGTTGCTTGAATTAACTTCTCGC 59.159 43.478 0.00 0.00 34.75 5.03
5327 5634 4.394795 CCGTTGCTTGAATTAACTTCTCG 58.605 43.478 0.00 0.00 34.75 4.04
5328 5635 4.723248 CCCGTTGCTTGAATTAACTTCTC 58.277 43.478 0.00 0.00 34.75 2.87
5329 5636 3.057526 GCCCGTTGCTTGAATTAACTTCT 60.058 43.478 0.00 0.00 36.87 2.85
5330 5637 3.242518 GCCCGTTGCTTGAATTAACTTC 58.757 45.455 0.00 0.00 36.87 3.01
5331 5638 2.029380 GGCCCGTTGCTTGAATTAACTT 60.029 45.455 0.00 0.00 40.92 2.66
5332 5639 1.544246 GGCCCGTTGCTTGAATTAACT 59.456 47.619 0.00 0.00 40.92 2.24
5333 5640 1.731098 CGGCCCGTTGCTTGAATTAAC 60.731 52.381 0.00 0.00 40.92 2.01
5334 5641 0.523966 CGGCCCGTTGCTTGAATTAA 59.476 50.000 0.00 0.00 40.92 1.40
5335 5642 1.309499 CCGGCCCGTTGCTTGAATTA 61.309 55.000 0.85 0.00 40.92 1.40
5336 5643 2.635443 CCGGCCCGTTGCTTGAATT 61.635 57.895 0.85 0.00 40.92 2.17
5337 5644 3.061848 CCGGCCCGTTGCTTGAAT 61.062 61.111 0.85 0.00 40.92 2.57
5356 5663 1.810755 GTAAACGAGGCTCCCTTTTGG 59.189 52.381 9.32 0.00 31.76 3.28
5357 5664 1.810755 GGTAAACGAGGCTCCCTTTTG 59.189 52.381 9.32 0.00 31.76 2.44
5358 5665 1.422402 TGGTAAACGAGGCTCCCTTTT 59.578 47.619 9.32 8.56 31.76 2.27
5359 5666 1.003233 CTGGTAAACGAGGCTCCCTTT 59.997 52.381 9.32 9.24 31.76 3.11
5360 5667 0.613777 CTGGTAAACGAGGCTCCCTT 59.386 55.000 9.32 4.97 31.76 3.95
5361 5668 1.900545 GCTGGTAAACGAGGCTCCCT 61.901 60.000 9.32 0.00 36.03 4.20
5362 5669 1.449778 GCTGGTAAACGAGGCTCCC 60.450 63.158 9.32 4.28 0.00 4.30
5363 5670 1.597461 AGCTGGTAAACGAGGCTCC 59.403 57.895 9.32 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.