Multiple sequence alignment - TraesCS1B01G142200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G142200 chr1B 100.000 6161 0 0 1 6161 190888385 190882225 0.000000e+00 11378.0
1 TraesCS1B01G142200 chr1B 89.935 308 30 1 329 635 458384039 458384346 4.480000e-106 396.0
2 TraesCS1B01G142200 chr1B 84.177 158 21 3 1 158 10046317 10046470 3.850000e-32 150.0
3 TraesCS1B01G142200 chr1B 84.000 100 12 4 3509 3608 179602631 179602726 6.580000e-15 93.5
4 TraesCS1B01G142200 chr1B 95.238 42 2 0 6120 6161 327351678 327351719 3.990000e-07 67.6
5 TraesCS1B01G142200 chr1D 95.400 3109 70 16 2440 5499 126674932 126671848 0.000000e+00 4881.0
6 TraesCS1B01G142200 chr1D 94.543 1686 52 15 688 2358 126676590 126674930 0.000000e+00 2567.0
7 TraesCS1B01G142200 chr1D 93.248 622 23 5 5489 6101 126670078 126669467 0.000000e+00 898.0
8 TraesCS1B01G142200 chr1D 93.532 201 12 1 27 226 126676927 126676727 1.300000e-76 298.0
9 TraesCS1B01G142200 chr1D 95.238 42 2 0 6120 6161 50949084 50949043 3.990000e-07 67.6
10 TraesCS1B01G142200 chr1D 95.238 42 2 0 6120 6161 208406783 208406742 3.990000e-07 67.6
11 TraesCS1B01G142200 chr1D 95.000 40 2 0 6122 6161 300165309 300165348 5.160000e-06 63.9
12 TraesCS1B01G142200 chr1D 95.000 40 2 0 6122 6161 387277924 387277885 5.160000e-06 63.9
13 TraesCS1B01G142200 chr1D 94.737 38 2 0 6124 6161 472333298 472333335 6.670000e-05 60.2
14 TraesCS1B01G142200 chr1D 100.000 28 0 0 1569 1596 126675796 126675769 1.100000e-02 52.8
15 TraesCS1B01G142200 chr1A 94.612 2487 70 16 3447 5880 141434960 141432485 0.000000e+00 3792.0
16 TraesCS1B01G142200 chr1A 95.693 952 29 7 2440 3381 141436208 141435259 0.000000e+00 1520.0
17 TraesCS1B01G142200 chr1A 94.361 869 43 3 1496 2358 141437074 141436206 0.000000e+00 1328.0
18 TraesCS1B01G142200 chr1A 95.803 691 21 3 688 1371 141437798 141437109 0.000000e+00 1109.0
19 TraesCS1B01G142200 chr1A 89.831 236 20 3 1 235 141438089 141437857 3.610000e-77 300.0
20 TraesCS1B01G142200 chr1A 93.684 190 10 1 5911 6098 141432490 141432301 3.640000e-72 283.0
21 TraesCS1B01G142200 chr1A 100.000 65 0 0 1532 1596 141437111 141437047 3.020000e-23 121.0
22 TraesCS1B01G142200 chr1A 95.714 70 3 0 3379 3448 141435237 141435168 5.050000e-21 113.0
23 TraesCS1B01G142200 chr1A 96.875 32 1 0 5355 5386 570189447 570189478 3.000000e-03 54.7
24 TraesCS1B01G142200 chr2D 90.909 308 27 1 329 636 618294475 618294781 4.440000e-111 412.0
25 TraesCS1B01G142200 chr2D 86.667 105 13 1 3549 3653 74329162 74329265 1.400000e-21 115.0
26 TraesCS1B01G142200 chr2D 84.043 94 12 3 3515 3608 35650370 35650460 3.060000e-13 87.9
27 TraesCS1B01G142200 chr2D 83.871 93 12 3 3516 3608 25032818 25032729 1.100000e-12 86.1
28 TraesCS1B01G142200 chr2D 82.716 81 13 1 2028 2107 553304598 553304518 3.080000e-08 71.3
29 TraesCS1B01G142200 chr2D 95.238 42 2 0 6120 6161 650759793 650759834 3.990000e-07 67.6
30 TraesCS1B01G142200 chr4D 90.789 304 27 1 329 632 20077416 20077114 7.440000e-109 405.0
31 TraesCS1B01G142200 chr4D 90.523 306 28 1 329 633 20141632 20141327 2.670000e-108 403.0
32 TraesCS1B01G142200 chr4D 96.512 86 3 0 2357 2442 28237809 28237894 6.440000e-30 143.0
33 TraesCS1B01G142200 chr4D 93.684 95 6 0 2348 2442 383775555 383775649 6.440000e-30 143.0
34 TraesCS1B01G142200 chr4D 95.238 42 2 0 6120 6161 231493802 231493843 3.990000e-07 67.6
35 TraesCS1B01G142200 chr4D 95.000 40 2 0 6122 6161 491583117 491583078 5.160000e-06 63.9
36 TraesCS1B01G142200 chr3D 90.523 306 28 1 329 633 9253672 9253367 2.670000e-108 403.0
37 TraesCS1B01G142200 chr3D 93.814 97 5 1 2352 2447 225865169 225865073 1.790000e-30 145.0
38 TraesCS1B01G142200 chr3D 100.000 38 0 0 6124 6161 384578356 384578319 3.080000e-08 71.3
39 TraesCS1B01G142200 chr3D 97.368 38 1 0 6124 6161 25405774 25405737 1.430000e-06 65.8
40 TraesCS1B01G142200 chr3D 97.368 38 1 0 6124 6161 83675889 83675926 1.430000e-06 65.8
41 TraesCS1B01G142200 chr3D 97.368 38 1 0 6124 6161 542394875 542394912 1.430000e-06 65.8
42 TraesCS1B01G142200 chr7A 90.323 310 25 5 326 632 138978922 138979229 9.620000e-108 401.0
43 TraesCS1B01G142200 chr7A 79.286 140 18 6 3563 3694 621913298 621913162 3.060000e-13 87.9
44 TraesCS1B01G142200 chr5D 90.461 304 28 1 329 632 497392584 497392886 3.460000e-107 399.0
45 TraesCS1B01G142200 chrUn 90.429 303 28 1 329 631 329701216 329701517 1.240000e-106 398.0
46 TraesCS1B01G142200 chr2B 90.196 306 29 1 329 633 798707257 798707562 1.240000e-106 398.0
47 TraesCS1B01G142200 chr2B 76.543 162 28 9 12 168 104785772 104785616 5.120000e-11 80.5
48 TraesCS1B01G142200 chr2B 82.716 81 12 2 2028 2107 659027865 659027786 3.080000e-08 71.3
49 TraesCS1B01G142200 chr2B 100.000 32 0 0 5354 5385 232794519 232794488 6.670000e-05 60.2
50 TraesCS1B01G142200 chr2B 100.000 29 0 0 3634 3662 490115854 490115826 3.000000e-03 54.7
51 TraesCS1B01G142200 chr2B 100.000 28 0 0 166 193 410916428 410916455 1.100000e-02 52.8
52 TraesCS1B01G142200 chr4B 96.774 93 3 0 2350 2442 432817384 432817292 8.270000e-34 156.0
53 TraesCS1B01G142200 chr4B 93.137 102 6 1 2342 2442 91298415 91298314 1.380000e-31 148.0
54 TraesCS1B01G142200 chr4B 84.946 93 11 3 3516 3608 180204997 180205086 2.370000e-14 91.6
55 TraesCS1B01G142200 chr4A 96.774 93 3 0 2350 2442 570916146 570916238 8.270000e-34 156.0
56 TraesCS1B01G142200 chr4A 86.290 124 13 4 2342 2461 615436899 615436776 1.390000e-26 132.0
57 TraesCS1B01G142200 chr4A 97.500 40 1 0 6122 6161 20263304 20263265 1.110000e-07 69.4
58 TraesCS1B01G142200 chr4A 100.000 29 0 0 5358 5386 624889018 624888990 3.000000e-03 54.7
59 TraesCS1B01G142200 chr6A 94.737 95 5 0 2348 2442 121887922 121888016 1.380000e-31 148.0
60 TraesCS1B01G142200 chr7D 94.565 92 5 0 2353 2444 81911043 81910952 6.440000e-30 143.0
61 TraesCS1B01G142200 chr7D 97.297 37 1 0 6122 6158 473624762 473624798 5.160000e-06 63.9
62 TraesCS1B01G142200 chr2A 84.071 113 17 1 3549 3661 73692554 73692665 2.350000e-19 108.0
63 TraesCS1B01G142200 chr7B 86.022 93 10 3 3516 3608 472457163 472457252 5.080000e-16 97.1
64 TraesCS1B01G142200 chr3B 87.500 72 8 1 2039 2110 15812522 15812452 1.420000e-11 82.4
65 TraesCS1B01G142200 chr3B 97.500 40 1 0 6122 6161 726477875 726477914 1.110000e-07 69.4
66 TraesCS1B01G142200 chr3B 97.500 40 1 0 6122 6161 810667451 810667412 1.110000e-07 69.4
67 TraesCS1B01G142200 chr6D 76.190 168 29 9 3511 3669 160397372 160397207 1.840000e-10 78.7
68 TraesCS1B01G142200 chr6D 95.238 42 2 0 6120 6161 216847303 216847344 3.990000e-07 67.6
69 TraesCS1B01G142200 chr6D 95.238 42 2 0 6120 6161 401201688 401201647 3.990000e-07 67.6
70 TraesCS1B01G142200 chr6D 92.857 42 3 0 6120 6161 26359276 26359235 1.850000e-05 62.1
71 TraesCS1B01G142200 chr6D 92.500 40 3 0 6122 6161 425085999 425086038 2.400000e-04 58.4
72 TraesCS1B01G142200 chr6B 100.000 42 0 0 6120 6161 1018981 1018940 1.840000e-10 78.7
73 TraesCS1B01G142200 chr6B 94.444 36 2 0 3634 3669 290590965 290590930 8.630000e-04 56.5
74 TraesCS1B01G142200 chr6B 94.444 36 2 0 3634 3669 290622776 290622741 8.630000e-04 56.5
75 TraesCS1B01G142200 chr5B 87.302 63 5 2 3514 3576 308564645 308564704 1.110000e-07 69.4
76 TraesCS1B01G142200 chr5A 97.297 37 1 0 5354 5390 346175076 346175112 5.160000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G142200 chr1B 190882225 190888385 6160 True 11378.00 11378 100.00000 1 6161 1 chr1B.!!$R1 6160
1 TraesCS1B01G142200 chr1D 126669467 126676927 7460 True 1739.36 4881 95.34460 27 6101 5 chr1D.!!$R4 6074
2 TraesCS1B01G142200 chr1A 141432301 141438089 5788 True 1070.75 3792 94.96225 1 6098 8 chr1A.!!$R1 6097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 624 0.111266 GCGTTTGCGTCTGTACTGTG 60.111 55.0 0.00 0.0 40.81 3.66 F
1651 1665 0.392461 TCCGACTGGCCAATAAGCAC 60.392 55.0 7.01 0.0 34.14 4.40 F
2371 2390 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.0 0.00 0.0 0.00 4.37 F
2537 2556 0.108138 GATGCCCGCTTACACTGACT 60.108 55.0 0.00 0.0 0.00 3.41 F
3551 3823 0.459489 TTGCTGCGGGGATTAATTGC 59.541 50.0 0.00 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 1705 1.202031 CGAGATTTTGTAACTGGCGGC 60.202 52.381 0.00 0.0 0.00 6.53 R
2537 2556 1.769026 TGTGGCCAACTACAGCAAAA 58.231 45.000 7.24 0.0 0.00 2.44 R
4176 4487 1.813513 AGTTGATGGAGAACTTGCCG 58.186 50.000 0.00 0.0 28.94 5.69 R
4688 4999 2.012673 CAATCTAGGGCAGTTCTGTGC 58.987 52.381 1.78 0.0 43.19 4.57 R
5643 7744 2.360475 GGGCAACTGGAGTCTGGC 60.360 66.667 0.00 0.0 33.95 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 149 9.421806 CATTGATCTCACCTAATGTAAGATCTC 57.578 37.037 0.00 0.00 33.82 2.75
158 160 8.037758 CCTAATGTAAGATCTCACACAAGTCTT 58.962 37.037 0.00 0.00 33.96 3.01
193 195 4.213270 CACCGACAACAACACATAGTTCAT 59.787 41.667 0.00 0.00 38.74 2.57
199 201 3.664107 ACAACACATAGTTCATCAGCGT 58.336 40.909 0.00 0.00 38.74 5.07
210 212 1.073025 ATCAGCGTTGCCTTCACCA 59.927 52.632 0.00 0.00 0.00 4.17
235 237 7.549147 AATACTACGAAAGGCTTGGGATATA 57.451 36.000 0.00 0.00 0.00 0.86
237 239 8.834004 ATACTACGAAAGGCTTGGGATATATA 57.166 34.615 0.00 0.00 0.00 0.86
238 240 7.735326 ACTACGAAAGGCTTGGGATATATAT 57.265 36.000 0.00 0.00 0.00 0.86
239 241 8.834004 ACTACGAAAGGCTTGGGATATATATA 57.166 34.615 0.00 0.00 0.00 0.86
241 243 7.735326 ACGAAAGGCTTGGGATATATATAGT 57.265 36.000 0.00 0.00 0.00 2.12
242 244 8.834004 ACGAAAGGCTTGGGATATATATAGTA 57.166 34.615 0.00 0.00 0.00 1.82
243 245 9.263446 ACGAAAGGCTTGGGATATATATAGTAA 57.737 33.333 0.00 0.00 0.00 2.24
280 282 8.465273 AGACTTTACCAAAATCAAGCTACTTT 57.535 30.769 0.00 0.00 0.00 2.66
281 283 9.569122 AGACTTTACCAAAATCAAGCTACTTTA 57.431 29.630 0.00 0.00 0.00 1.85
298 302 9.515226 AGCTACTTTATTTTCTGAATTGTACCA 57.485 29.630 0.00 0.00 0.00 3.25
308 312 9.883142 TTTTCTGAATTGTACCAAAATCAAGTT 57.117 25.926 0.00 0.00 0.00 2.66
309 313 9.883142 TTTCTGAATTGTACCAAAATCAAGTTT 57.117 25.926 0.00 0.00 0.00 2.66
310 314 9.883142 TTCTGAATTGTACCAAAATCAAGTTTT 57.117 25.926 0.00 0.00 40.59 2.43
311 315 9.528018 TCTGAATTGTACCAAAATCAAGTTTTC 57.472 29.630 0.00 0.00 37.93 2.29
313 317 9.658799 TGAATTGTACCAAAATCAAGTTTTCAA 57.341 25.926 0.00 0.00 37.93 2.69
314 318 9.914923 GAATTGTACCAAAATCAAGTTTTCAAC 57.085 29.630 0.00 0.00 37.93 3.18
316 320 9.612066 ATTGTACCAAAATCAAGTTTTCAACAT 57.388 25.926 0.00 0.00 37.93 2.71
317 321 8.641499 TGTACCAAAATCAAGTTTTCAACATC 57.359 30.769 0.00 0.00 37.93 3.06
318 322 8.474025 TGTACCAAAATCAAGTTTTCAACATCT 58.526 29.630 0.00 0.00 37.93 2.90
320 324 8.871686 ACCAAAATCAAGTTTTCAACATCTAC 57.128 30.769 0.00 0.00 37.93 2.59
321 325 7.647715 ACCAAAATCAAGTTTTCAACATCTACG 59.352 33.333 0.00 0.00 37.93 3.51
322 326 7.114811 CCAAAATCAAGTTTTCAACATCTACGG 59.885 37.037 0.00 0.00 37.93 4.02
323 327 4.742438 TCAAGTTTTCAACATCTACGGC 57.258 40.909 0.00 0.00 0.00 5.68
324 328 3.500680 TCAAGTTTTCAACATCTACGGCC 59.499 43.478 0.00 0.00 0.00 6.13
326 330 3.686016 AGTTTTCAACATCTACGGCCAT 58.314 40.909 2.24 0.00 0.00 4.40
327 331 3.689649 AGTTTTCAACATCTACGGCCATC 59.310 43.478 2.24 0.00 0.00 3.51
328 332 1.934589 TTCAACATCTACGGCCATCG 58.065 50.000 2.24 0.00 45.88 3.84
329 333 0.529773 TCAACATCTACGGCCATCGC 60.530 55.000 2.24 0.00 43.89 4.58
330 334 1.591594 AACATCTACGGCCATCGCG 60.592 57.895 2.24 0.00 43.89 5.87
331 335 2.011741 AACATCTACGGCCATCGCGA 62.012 55.000 13.09 13.09 43.89 5.87
332 336 1.299850 CATCTACGGCCATCGCGAA 60.300 57.895 15.24 0.00 43.89 4.70
333 337 1.299926 ATCTACGGCCATCGCGAAC 60.300 57.895 15.24 5.64 43.89 3.95
334 338 2.694829 ATCTACGGCCATCGCGAACC 62.695 60.000 15.24 14.65 43.89 3.62
335 339 3.709880 CTACGGCCATCGCGAACCA 62.710 63.158 15.24 0.00 43.89 3.67
336 340 3.298115 TACGGCCATCGCGAACCAA 62.298 57.895 15.24 3.53 43.89 3.67
337 341 4.160635 CGGCCATCGCGAACCAAC 62.161 66.667 15.24 1.64 35.02 3.77
338 342 3.810896 GGCCATCGCGAACCAACC 61.811 66.667 15.24 7.10 35.02 3.77
339 343 2.746277 GCCATCGCGAACCAACCT 60.746 61.111 15.24 0.00 0.00 3.50
340 344 3.039202 GCCATCGCGAACCAACCTG 62.039 63.158 15.24 4.49 0.00 4.00
341 345 1.671054 CCATCGCGAACCAACCTGT 60.671 57.895 15.24 0.00 0.00 4.00
342 346 1.497278 CATCGCGAACCAACCTGTG 59.503 57.895 15.24 0.00 0.00 3.66
355 359 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
356 360 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
357 361 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
358 362 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
360 364 2.983192 TGTGGTTGGATGGTTAGAGGAA 59.017 45.455 0.00 0.00 0.00 3.36
363 367 3.009033 TGGTTGGATGGTTAGAGGAACTG 59.991 47.826 0.00 0.00 41.55 3.16
365 369 3.981071 TGGATGGTTAGAGGAACTGTG 57.019 47.619 0.00 0.00 41.55 3.66
366 370 2.571653 TGGATGGTTAGAGGAACTGTGG 59.428 50.000 0.00 0.00 41.55 4.17
368 372 3.773119 GGATGGTTAGAGGAACTGTGGTA 59.227 47.826 0.00 0.00 41.55 3.25
369 373 4.409247 GGATGGTTAGAGGAACTGTGGTAT 59.591 45.833 0.00 0.00 41.55 2.73
370 374 5.453480 GGATGGTTAGAGGAACTGTGGTATC 60.453 48.000 0.00 0.00 41.55 2.24
371 375 3.773119 TGGTTAGAGGAACTGTGGTATCC 59.227 47.826 0.00 0.00 41.55 2.59
373 377 1.880941 AGAGGAACTGTGGTATCCCC 58.119 55.000 0.00 0.00 41.55 4.81
374 378 1.080498 AGAGGAACTGTGGTATCCCCA 59.920 52.381 0.00 0.00 41.55 4.96
375 379 1.486726 GAGGAACTGTGGTATCCCCAG 59.513 57.143 0.00 0.00 42.40 4.45
376 380 1.080498 AGGAACTGTGGTATCCCCAGA 59.920 52.381 5.37 0.00 46.45 3.86
377 381 2.127708 GGAACTGTGGTATCCCCAGAT 58.872 52.381 5.37 0.00 46.45 2.90
378 382 2.104963 GGAACTGTGGTATCCCCAGATC 59.895 54.545 5.37 3.22 46.45 2.75
380 384 2.402564 ACTGTGGTATCCCCAGATCAG 58.597 52.381 5.37 0.00 46.45 2.90
381 385 1.071385 CTGTGGTATCCCCAGATCAGC 59.929 57.143 0.00 0.00 46.45 4.26
383 387 1.071385 GTGGTATCCCCAGATCAGCAG 59.929 57.143 0.00 0.00 46.45 4.24
384 388 0.689623 GGTATCCCCAGATCAGCAGG 59.310 60.000 0.00 0.00 33.67 4.85
385 389 1.722034 GTATCCCCAGATCAGCAGGA 58.278 55.000 0.00 0.00 33.67 3.86
386 390 2.264455 GTATCCCCAGATCAGCAGGAT 58.736 52.381 11.16 11.16 40.43 3.24
387 391 1.830486 ATCCCCAGATCAGCAGGATT 58.170 50.000 0.00 0.00 36.00 3.01
388 392 1.135094 TCCCCAGATCAGCAGGATTC 58.865 55.000 0.00 0.00 36.00 2.52
389 393 0.841961 CCCCAGATCAGCAGGATTCA 59.158 55.000 0.00 0.00 36.00 2.57
390 394 1.213678 CCCCAGATCAGCAGGATTCAA 59.786 52.381 0.00 0.00 36.00 2.69
391 395 2.573369 CCCAGATCAGCAGGATTCAAG 58.427 52.381 0.00 0.00 36.00 3.02
392 396 2.092538 CCCAGATCAGCAGGATTCAAGT 60.093 50.000 0.00 0.00 36.00 3.16
393 397 3.204526 CCAGATCAGCAGGATTCAAGTC 58.795 50.000 0.00 0.00 36.00 3.01
394 398 3.204526 CAGATCAGCAGGATTCAAGTCC 58.795 50.000 0.00 0.00 36.00 3.85
402 406 3.557228 AGGATTCAAGTCCTGATGCTC 57.443 47.619 0.00 0.00 46.76 4.26
403 407 2.158986 AGGATTCAAGTCCTGATGCTCG 60.159 50.000 0.00 0.00 46.76 5.03
404 408 1.596727 GATTCAAGTCCTGATGCTCGC 59.403 52.381 0.00 0.00 32.78 5.03
405 409 0.321346 TTCAAGTCCTGATGCTCGCA 59.679 50.000 0.00 0.00 32.78 5.10
406 410 0.538584 TCAAGTCCTGATGCTCGCAT 59.461 50.000 3.70 3.70 39.69 4.73
407 411 1.065926 TCAAGTCCTGATGCTCGCATT 60.066 47.619 5.79 0.00 36.70 3.56
408 412 1.741706 CAAGTCCTGATGCTCGCATTT 59.258 47.619 5.79 0.00 36.70 2.32
409 413 2.938451 CAAGTCCTGATGCTCGCATTTA 59.062 45.455 5.79 0.00 36.70 1.40
410 414 3.482156 AGTCCTGATGCTCGCATTTAT 57.518 42.857 5.79 0.00 36.70 1.40
411 415 3.813443 AGTCCTGATGCTCGCATTTATT 58.187 40.909 5.79 0.00 36.70 1.40
412 416 3.812053 AGTCCTGATGCTCGCATTTATTC 59.188 43.478 5.79 0.00 36.70 1.75
413 417 3.058639 GTCCTGATGCTCGCATTTATTCC 60.059 47.826 5.79 0.00 36.70 3.01
414 418 3.144506 CCTGATGCTCGCATTTATTCCT 58.855 45.455 5.79 0.00 36.70 3.36
415 419 3.058432 CCTGATGCTCGCATTTATTCCTG 60.058 47.826 5.79 0.00 36.70 3.86
416 420 3.807553 TGATGCTCGCATTTATTCCTGA 58.192 40.909 5.79 0.00 36.70 3.86
417 421 4.198530 TGATGCTCGCATTTATTCCTGAA 58.801 39.130 5.79 0.00 36.70 3.02
418 422 4.823442 TGATGCTCGCATTTATTCCTGAAT 59.177 37.500 5.79 0.00 36.70 2.57
419 423 5.300034 TGATGCTCGCATTTATTCCTGAATT 59.700 36.000 5.79 0.00 36.70 2.17
420 424 5.581126 TGCTCGCATTTATTCCTGAATTT 57.419 34.783 0.00 0.00 32.50 1.82
421 425 6.691754 TGCTCGCATTTATTCCTGAATTTA 57.308 33.333 0.00 0.00 32.50 1.40
422 426 7.275888 TGCTCGCATTTATTCCTGAATTTAT 57.724 32.000 0.00 0.00 32.50 1.40
423 427 7.715657 TGCTCGCATTTATTCCTGAATTTATT 58.284 30.769 0.00 0.00 32.50 1.40
424 428 8.196771 TGCTCGCATTTATTCCTGAATTTATTT 58.803 29.630 0.00 0.00 32.50 1.40
425 429 8.694394 GCTCGCATTTATTCCTGAATTTATTTC 58.306 33.333 0.00 0.00 34.72 2.17
426 430 9.734620 CTCGCATTTATTCCTGAATTTATTTCA 57.265 29.630 0.00 0.00 42.09 2.69
438 442 7.504922 TGAATTTATTTCAGAATTTTCGGCG 57.495 32.000 0.00 0.00 39.44 6.46
439 443 7.309177 TGAATTTATTTCAGAATTTTCGGCGA 58.691 30.769 4.99 4.99 39.44 5.54
440 444 7.973388 TGAATTTATTTCAGAATTTTCGGCGAT 59.027 29.630 11.76 0.00 39.44 4.58
441 445 7.684062 ATTTATTTCAGAATTTTCGGCGATG 57.316 32.000 11.76 4.79 0.00 3.84
442 446 2.542766 TTCAGAATTTTCGGCGATGC 57.457 45.000 11.76 0.00 0.00 3.91
443 447 0.373370 TCAGAATTTTCGGCGATGCG 59.627 50.000 11.76 0.00 0.00 4.73
455 459 3.272766 CGATGCGCATCTAGTGGAA 57.727 52.632 38.93 3.85 35.72 3.53
456 460 1.135046 CGATGCGCATCTAGTGGAAG 58.865 55.000 38.93 22.18 35.72 3.46
457 461 1.506493 GATGCGCATCTAGTGGAAGG 58.494 55.000 36.92 0.00 35.04 3.46
458 462 1.069204 GATGCGCATCTAGTGGAAGGA 59.931 52.381 36.92 0.00 35.04 3.36
459 463 0.461548 TGCGCATCTAGTGGAAGGAG 59.538 55.000 5.66 0.00 0.00 3.69
460 464 0.747255 GCGCATCTAGTGGAAGGAGA 59.253 55.000 0.30 0.00 0.00 3.71
461 465 1.537135 GCGCATCTAGTGGAAGGAGAC 60.537 57.143 0.30 0.00 0.00 3.36
462 466 1.268794 CGCATCTAGTGGAAGGAGACG 60.269 57.143 0.00 0.00 0.00 4.18
463 467 1.751924 GCATCTAGTGGAAGGAGACGT 59.248 52.381 0.00 0.00 0.00 4.34
464 468 2.223618 GCATCTAGTGGAAGGAGACGTC 60.224 54.545 7.70 7.70 38.20 4.34
493 497 2.196295 GACGAGGTGTCTATGCTGAC 57.804 55.000 0.00 0.00 44.58 3.51
494 498 1.746220 GACGAGGTGTCTATGCTGACT 59.254 52.381 0.00 0.00 44.58 3.41
495 499 2.164624 GACGAGGTGTCTATGCTGACTT 59.835 50.000 0.00 0.00 44.58 3.01
496 500 2.164624 ACGAGGTGTCTATGCTGACTTC 59.835 50.000 0.00 0.00 37.79 3.01
497 501 2.792890 CGAGGTGTCTATGCTGACTTCG 60.793 54.545 0.00 0.00 37.79 3.79
498 502 2.164624 GAGGTGTCTATGCTGACTTCGT 59.835 50.000 6.63 3.00 37.79 3.85
499 503 3.353557 AGGTGTCTATGCTGACTTCGTA 58.646 45.455 6.63 0.00 37.79 3.43
500 504 3.762288 AGGTGTCTATGCTGACTTCGTAA 59.238 43.478 6.63 0.00 37.79 3.18
501 505 4.219944 AGGTGTCTATGCTGACTTCGTAAA 59.780 41.667 6.63 0.00 37.79 2.01
502 506 5.105310 AGGTGTCTATGCTGACTTCGTAAAT 60.105 40.000 6.63 0.00 37.79 1.40
503 507 5.581085 GGTGTCTATGCTGACTTCGTAAATT 59.419 40.000 6.63 0.00 37.79 1.82
504 508 6.092259 GGTGTCTATGCTGACTTCGTAAATTT 59.908 38.462 0.00 0.00 37.79 1.82
505 509 7.174082 GTGTCTATGCTGACTTCGTAAATTTC 58.826 38.462 0.00 0.00 37.79 2.17
506 510 6.871492 TGTCTATGCTGACTTCGTAAATTTCA 59.129 34.615 0.00 0.00 37.79 2.69
507 511 7.386573 TGTCTATGCTGACTTCGTAAATTTCAA 59.613 33.333 0.00 0.00 37.79 2.69
508 512 7.900352 GTCTATGCTGACTTCGTAAATTTCAAG 59.100 37.037 0.00 0.00 34.39 3.02
509 513 6.801539 ATGCTGACTTCGTAAATTTCAAGA 57.198 33.333 0.00 0.00 0.00 3.02
510 514 6.801539 TGCTGACTTCGTAAATTTCAAGAT 57.198 33.333 0.00 0.00 0.00 2.40
511 515 6.602179 TGCTGACTTCGTAAATTTCAAGATG 58.398 36.000 0.00 0.00 0.00 2.90
512 516 6.426633 TGCTGACTTCGTAAATTTCAAGATGA 59.573 34.615 0.00 0.00 0.00 2.92
513 517 7.119699 TGCTGACTTCGTAAATTTCAAGATGAT 59.880 33.333 0.00 0.00 0.00 2.45
514 518 8.604035 GCTGACTTCGTAAATTTCAAGATGATA 58.396 33.333 0.00 0.00 0.00 2.15
517 521 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
518 522 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
519 523 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
520 524 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
521 525 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
522 526 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
523 527 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
524 528 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
525 529 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
526 530 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
527 531 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
528 532 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
529 533 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
530 534 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
531 535 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
532 536 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
533 537 1.888436 ATGCCGGCTCAGTCTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
534 538 1.374252 GCCGGCTCAGTCTTTCGAA 60.374 57.895 22.15 0.00 0.00 3.71
535 539 1.355066 GCCGGCTCAGTCTTTCGAAG 61.355 60.000 22.15 0.00 0.00 3.79
536 540 0.243907 CCGGCTCAGTCTTTCGAAGA 59.756 55.000 0.00 0.00 34.51 2.87
537 541 1.134965 CCGGCTCAGTCTTTCGAAGAT 60.135 52.381 0.00 0.00 40.18 2.40
538 542 1.923204 CGGCTCAGTCTTTCGAAGATG 59.077 52.381 0.00 0.00 40.18 2.90
539 543 1.663135 GGCTCAGTCTTTCGAAGATGC 59.337 52.381 0.00 0.00 40.18 3.91
540 544 2.615869 GCTCAGTCTTTCGAAGATGCT 58.384 47.619 0.00 0.00 40.18 3.79
541 545 2.602660 GCTCAGTCTTTCGAAGATGCTC 59.397 50.000 0.00 0.00 40.18 4.26
542 546 3.842820 CTCAGTCTTTCGAAGATGCTCA 58.157 45.455 0.00 0.00 40.18 4.26
543 547 4.431809 CTCAGTCTTTCGAAGATGCTCAT 58.568 43.478 0.00 0.00 40.18 2.90
544 548 5.582689 TCAGTCTTTCGAAGATGCTCATA 57.417 39.130 0.00 0.00 40.18 2.15
545 549 5.586339 TCAGTCTTTCGAAGATGCTCATAG 58.414 41.667 0.00 0.00 40.18 2.23
546 550 4.744137 CAGTCTTTCGAAGATGCTCATAGG 59.256 45.833 0.00 0.00 40.18 2.57
547 551 4.054671 GTCTTTCGAAGATGCTCATAGGG 58.945 47.826 0.00 0.00 40.18 3.53
548 552 3.960755 TCTTTCGAAGATGCTCATAGGGA 59.039 43.478 0.00 0.00 35.04 4.20
549 553 4.590647 TCTTTCGAAGATGCTCATAGGGAT 59.409 41.667 0.00 0.00 35.04 3.85
550 554 5.775195 TCTTTCGAAGATGCTCATAGGGATA 59.225 40.000 0.00 0.00 35.04 2.59
551 555 5.651387 TTCGAAGATGCTCATAGGGATAG 57.349 43.478 0.00 0.00 35.04 2.08
552 556 4.019858 TCGAAGATGCTCATAGGGATAGG 58.980 47.826 0.00 0.00 0.00 2.57
553 557 3.131933 CGAAGATGCTCATAGGGATAGGG 59.868 52.174 0.00 0.00 0.00 3.53
554 558 3.862600 AGATGCTCATAGGGATAGGGT 57.137 47.619 0.00 0.00 0.00 4.34
555 559 3.448934 AGATGCTCATAGGGATAGGGTG 58.551 50.000 0.00 0.00 0.00 4.61
556 560 2.795291 TGCTCATAGGGATAGGGTGT 57.205 50.000 0.00 0.00 0.00 4.16
557 561 2.329267 TGCTCATAGGGATAGGGTGTG 58.671 52.381 0.00 0.00 0.00 3.82
558 562 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
559 563 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
560 564 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
561 565 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
562 566 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
563 567 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
564 568 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
565 569 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
566 570 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
569 573 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
570 574 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
571 575 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
572 576 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
573 577 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
574 578 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
575 579 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
576 580 0.787787 GCGTGTGTGCGTTCATAAGA 59.212 50.000 0.00 0.00 0.00 2.10
577 581 1.201812 GCGTGTGTGCGTTCATAAGAG 60.202 52.381 0.00 0.00 0.00 2.85
578 582 2.058798 CGTGTGTGCGTTCATAAGAGT 58.941 47.619 0.00 0.00 0.00 3.24
579 583 2.159973 CGTGTGTGCGTTCATAAGAGTG 60.160 50.000 0.00 0.00 0.00 3.51
580 584 3.057019 GTGTGTGCGTTCATAAGAGTGA 58.943 45.455 0.00 0.00 0.00 3.41
581 585 3.121944 GTGTGTGCGTTCATAAGAGTGAG 59.878 47.826 0.00 0.00 0.00 3.51
582 586 3.243737 TGTGTGCGTTCATAAGAGTGAGT 60.244 43.478 0.00 0.00 0.00 3.41
583 587 3.121944 GTGTGCGTTCATAAGAGTGAGTG 59.878 47.826 0.00 0.00 0.00 3.51
584 588 3.243737 TGTGCGTTCATAAGAGTGAGTGT 60.244 43.478 0.00 0.00 0.00 3.55
585 589 4.022676 TGTGCGTTCATAAGAGTGAGTGTA 60.023 41.667 0.00 0.00 0.00 2.90
586 590 5.103000 GTGCGTTCATAAGAGTGAGTGTAT 58.897 41.667 0.00 0.00 0.00 2.29
587 591 5.004821 GTGCGTTCATAAGAGTGAGTGTATG 59.995 44.000 0.00 0.00 0.00 2.39
588 592 4.026475 GCGTTCATAAGAGTGAGTGTATGC 60.026 45.833 0.00 0.00 0.00 3.14
589 593 4.205181 CGTTCATAAGAGTGAGTGTATGCG 59.795 45.833 0.00 0.00 0.00 4.73
590 594 3.706698 TCATAAGAGTGAGTGTATGCGC 58.293 45.455 0.00 0.00 0.00 6.09
591 595 2.188837 TAAGAGTGAGTGTATGCGCG 57.811 50.000 0.00 0.00 0.00 6.86
592 596 0.243907 AAGAGTGAGTGTATGCGCGT 59.756 50.000 8.43 7.55 0.00 6.01
593 597 0.456824 AGAGTGAGTGTATGCGCGTG 60.457 55.000 13.61 0.00 0.00 5.34
594 598 0.732880 GAGTGAGTGTATGCGCGTGT 60.733 55.000 13.61 0.00 0.00 4.49
595 599 0.524414 AGTGAGTGTATGCGCGTGTA 59.476 50.000 13.61 0.00 0.00 2.90
596 600 1.134367 AGTGAGTGTATGCGCGTGTAT 59.866 47.619 13.61 4.63 0.00 2.29
597 601 2.356695 AGTGAGTGTATGCGCGTGTATA 59.643 45.455 13.61 2.40 0.00 1.47
598 602 3.004419 AGTGAGTGTATGCGCGTGTATAT 59.996 43.478 13.61 0.00 0.00 0.86
599 603 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
600 604 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
601 605 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
602 606 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
607 611 2.264207 CGCGTGTATATGAGCGTTTG 57.736 50.000 0.00 0.00 46.48 2.93
608 612 1.653679 CGCGTGTATATGAGCGTTTGC 60.654 52.381 0.00 0.00 46.48 3.68
619 623 2.222592 GCGTTTGCGTCTGTACTGT 58.777 52.632 0.00 0.00 40.81 3.55
620 624 0.111266 GCGTTTGCGTCTGTACTGTG 60.111 55.000 0.00 0.00 40.81 3.66
621 625 1.205657 CGTTTGCGTCTGTACTGTGT 58.794 50.000 0.00 0.00 0.00 3.72
622 626 1.591158 CGTTTGCGTCTGTACTGTGTT 59.409 47.619 0.00 0.00 0.00 3.32
623 627 2.790448 CGTTTGCGTCTGTACTGTGTTA 59.210 45.455 0.00 0.00 0.00 2.41
624 628 3.243410 CGTTTGCGTCTGTACTGTGTTAA 59.757 43.478 0.00 0.00 0.00 2.01
625 629 4.605354 CGTTTGCGTCTGTACTGTGTTAAG 60.605 45.833 0.00 0.00 0.00 1.85
626 630 3.994204 TGCGTCTGTACTGTGTTAAGA 57.006 42.857 0.00 0.00 0.00 2.10
627 631 4.310357 TGCGTCTGTACTGTGTTAAGAA 57.690 40.909 0.00 0.00 0.00 2.52
628 632 4.684877 TGCGTCTGTACTGTGTTAAGAAA 58.315 39.130 0.00 0.00 0.00 2.52
629 633 5.110598 TGCGTCTGTACTGTGTTAAGAAAA 58.889 37.500 0.00 0.00 0.00 2.29
630 634 5.581479 TGCGTCTGTACTGTGTTAAGAAAAA 59.419 36.000 0.00 0.00 0.00 1.94
654 658 0.689412 TCTACGGGCATCATGGACCA 60.689 55.000 0.00 0.00 34.73 4.02
666 670 3.096852 TGGACCAGCCATCTTACCA 57.903 52.632 0.00 0.00 43.33 3.25
667 671 1.595311 TGGACCAGCCATCTTACCAT 58.405 50.000 0.00 0.00 43.33 3.55
668 672 2.770447 TGGACCAGCCATCTTACCATA 58.230 47.619 0.00 0.00 43.33 2.74
669 673 3.119319 TGGACCAGCCATCTTACCATAA 58.881 45.455 0.00 0.00 43.33 1.90
670 674 3.721575 TGGACCAGCCATCTTACCATAAT 59.278 43.478 0.00 0.00 43.33 1.28
671 675 4.202461 TGGACCAGCCATCTTACCATAATC 60.202 45.833 0.00 0.00 43.33 1.75
672 676 4.042187 GGACCAGCCATCTTACCATAATCT 59.958 45.833 0.00 0.00 36.34 2.40
673 677 5.234466 ACCAGCCATCTTACCATAATCTC 57.766 43.478 0.00 0.00 0.00 2.75
674 678 4.042187 ACCAGCCATCTTACCATAATCTCC 59.958 45.833 0.00 0.00 0.00 3.71
675 679 4.566488 CCAGCCATCTTACCATAATCTCCC 60.566 50.000 0.00 0.00 0.00 4.30
676 680 3.589288 AGCCATCTTACCATAATCTCCCC 59.411 47.826 0.00 0.00 0.00 4.81
677 681 3.330701 GCCATCTTACCATAATCTCCCCA 59.669 47.826 0.00 0.00 0.00 4.96
678 682 4.018050 GCCATCTTACCATAATCTCCCCAT 60.018 45.833 0.00 0.00 0.00 4.00
679 683 5.749462 CCATCTTACCATAATCTCCCCATC 58.251 45.833 0.00 0.00 0.00 3.51
680 684 5.251468 CCATCTTACCATAATCTCCCCATCA 59.749 44.000 0.00 0.00 0.00 3.07
681 685 6.069206 CCATCTTACCATAATCTCCCCATCAT 60.069 42.308 0.00 0.00 0.00 2.45
682 686 6.627087 TCTTACCATAATCTCCCCATCATC 57.373 41.667 0.00 0.00 0.00 2.92
683 687 3.988976 ACCATAATCTCCCCATCATCG 57.011 47.619 0.00 0.00 0.00 3.84
684 688 3.251484 ACCATAATCTCCCCATCATCGT 58.749 45.455 0.00 0.00 0.00 3.73
685 689 3.261897 ACCATAATCTCCCCATCATCGTC 59.738 47.826 0.00 0.00 0.00 4.20
686 690 3.369892 CCATAATCTCCCCATCATCGTCC 60.370 52.174 0.00 0.00 0.00 4.79
714 718 1.029681 GTCCCATAAATCCAACGGCC 58.970 55.000 0.00 0.00 0.00 6.13
795 799 1.441729 GTGCGCCATAGAGCCTACA 59.558 57.895 4.18 0.00 38.15 2.74
877 881 2.492090 CCTCTGGAAGTCTCGCCG 59.508 66.667 0.00 0.00 33.76 6.46
1163 1167 5.506317 GCTGGAGAAATATTGTTCGGATTGG 60.506 44.000 0.00 0.00 32.50 3.16
1272 1283 7.148787 GCTGTAGTGTAGTGACTGTAAATGTTC 60.149 40.741 0.00 0.00 0.00 3.18
1347 1358 5.108891 GCAGTTTGTTTCGTGTTATTTCGTC 60.109 40.000 0.00 0.00 0.00 4.20
1452 1465 9.908152 AAATTTTTCTGCAAATACACCTAGTAC 57.092 29.630 0.00 0.00 35.05 2.73
1459 1472 7.123697 TCTGCAAATACACCTAGTACACATACT 59.876 37.037 0.00 0.00 44.22 2.12
1460 1473 8.296211 TGCAAATACACCTAGTACACATACTA 57.704 34.615 0.00 0.00 41.99 1.82
1527 1541 0.867746 TGCGAGTTGTGATTCAGTGC 59.132 50.000 0.00 0.00 0.00 4.40
1622 1636 6.526526 ACCCCACAAATAAATTAAACACACC 58.473 36.000 0.00 0.00 0.00 4.16
1651 1665 0.392461 TCCGACTGGCCAATAAGCAC 60.392 55.000 7.01 0.00 34.14 4.40
1653 1667 0.676466 CGACTGGCCAATAAGCACCA 60.676 55.000 7.01 0.00 0.00 4.17
1709 1723 1.173913 GGCCGCCAGTTACAAAATCT 58.826 50.000 3.91 0.00 0.00 2.40
1771 1785 1.301716 CGGTAGGCACACAACAGCT 60.302 57.895 0.00 0.00 0.00 4.24
1783 1797 1.078918 AACAGCTGCGAGCATAGCA 60.079 52.632 15.27 1.09 46.99 3.49
1894 1908 8.485591 GGCAAGTACGTATGAAAGATACATAAC 58.514 37.037 0.00 0.00 33.04 1.89
1914 1928 7.275560 ACATAACTGAAACTGAACTTGTTTTGC 59.724 33.333 0.00 0.00 37.70 3.68
1942 1956 2.030862 GTTACCGCCCACCGAACA 59.969 61.111 0.00 0.00 40.02 3.18
1983 1997 7.560626 TGGTTAGTATTGGTTTTTGGTTGTACT 59.439 33.333 0.00 0.00 0.00 2.73
2316 2335 0.468226 TAGCGCCAATTCGAAGGGAT 59.532 50.000 19.68 8.95 0.00 3.85
2361 2380 9.556030 GTTGTTTCAATAGCTAATTTGTACTCC 57.444 33.333 0.00 0.00 0.00 3.85
2362 2381 8.276252 TGTTTCAATAGCTAATTTGTACTCCC 57.724 34.615 0.00 0.00 0.00 4.30
2363 2382 8.107095 TGTTTCAATAGCTAATTTGTACTCCCT 58.893 33.333 0.00 0.00 0.00 4.20
2364 2383 8.613482 GTTTCAATAGCTAATTTGTACTCCCTC 58.387 37.037 0.00 0.00 0.00 4.30
2365 2384 6.827727 TCAATAGCTAATTTGTACTCCCTCC 58.172 40.000 0.00 0.00 0.00 4.30
2366 2385 3.821421 AGCTAATTTGTACTCCCTCCG 57.179 47.619 0.00 0.00 0.00 4.63
2367 2386 3.105283 AGCTAATTTGTACTCCCTCCGT 58.895 45.455 0.00 0.00 0.00 4.69
2368 2387 3.132467 AGCTAATTTGTACTCCCTCCGTC 59.868 47.826 0.00 0.00 0.00 4.79
2369 2388 3.740452 GCTAATTTGTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
2370 2389 1.201424 ATTTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
2371 2390 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2372 2391 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2373 2392 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2374 2393 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2375 2394 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2376 2395 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2377 2396 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2378 2397 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2379 2398 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2380 2399 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2381 2400 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2382 2401 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2383 2402 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2384 2403 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2385 2404 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2386 2405 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2387 2406 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2388 2407 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2389 2408 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2390 2409 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2391 2410 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2392 2411 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2393 2412 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2394 2413 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2395 2414 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2401 2420 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2402 2421 9.880157 AAGTGACTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
2403 2422 9.530633 AGTGACTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
2404 2423 9.310716 GTGACTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
2431 2450 9.736023 ACAAAATTGAGTCACTTATTTTGAGAC 57.264 29.630 30.39 8.03 44.64 3.36
2432 2451 8.895845 CAAAATTGAGTCACTTATTTTGAGACG 58.104 33.333 24.58 7.87 44.64 4.18
2433 2452 6.727824 ATTGAGTCACTTATTTTGAGACGG 57.272 37.500 0.00 0.00 34.56 4.79
2434 2453 5.462530 TGAGTCACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 34.56 4.69
2435 2454 5.470368 TGAGTCACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 34.56 4.63
2436 2455 4.822026 AGTCACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 34.56 4.30
2437 2456 3.933332 GTCACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2438 2457 3.835978 TCACTTATTTTGAGACGGAGGGA 59.164 43.478 0.00 0.00 0.00 4.20
2439 2458 4.081642 TCACTTATTTTGAGACGGAGGGAG 60.082 45.833 0.00 0.00 0.00 4.30
2440 2459 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
2441 2460 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
2537 2556 0.108138 GATGCCCGCTTACACTGACT 60.108 55.000 0.00 0.00 0.00 3.41
2649 2668 7.768582 TCTGGAATTTCGCAGTCTTCAATATTA 59.231 33.333 11.96 0.00 0.00 0.98
2898 2924 9.612620 GATGTACAACTTAAAAGAATTGAGGTG 57.387 33.333 0.00 0.00 0.00 4.00
3347 3376 7.903995 TTTGCAAAATTCTCTTGTTTGTTCT 57.096 28.000 10.02 0.00 35.22 3.01
3411 3464 7.798596 ATCATGATTGTACTGGATGAACTTC 57.201 36.000 1.18 0.00 0.00 3.01
3434 3487 9.132521 CTTCTCACTGGCATTAAAAATAGTTTG 57.867 33.333 0.00 0.00 0.00 2.93
3546 3818 1.743623 CGTGTTGCTGCGGGGATTA 60.744 57.895 0.00 0.00 0.00 1.75
3547 3819 1.302383 CGTGTTGCTGCGGGGATTAA 61.302 55.000 0.00 0.00 0.00 1.40
3548 3820 1.102978 GTGTTGCTGCGGGGATTAAT 58.897 50.000 0.00 0.00 0.00 1.40
3549 3821 1.476488 GTGTTGCTGCGGGGATTAATT 59.524 47.619 0.00 0.00 0.00 1.40
3550 3822 1.476085 TGTTGCTGCGGGGATTAATTG 59.524 47.619 0.00 0.00 0.00 2.32
3551 3823 0.459489 TTGCTGCGGGGATTAATTGC 59.541 50.000 0.00 0.00 0.00 3.56
3739 4016 2.027929 CCCATGAATGGTTGCATGTTGT 60.028 45.455 8.49 0.00 46.65 3.32
3832 4114 5.418840 TCATTATCGCAGTGGATGAGCTATA 59.581 40.000 0.00 0.00 0.00 1.31
3885 4170 6.620089 GCAGTACGGAAAAATTGAGGACTTAC 60.620 42.308 0.00 0.00 0.00 2.34
3892 4177 7.389607 CGGAAAAATTGAGGACTTACTTTCCTA 59.610 37.037 8.22 0.00 44.03 2.94
3921 4206 4.935808 GGTACTACAATTCACTTCCACCAG 59.064 45.833 0.00 0.00 0.00 4.00
4014 4299 7.394641 CAGGCCTTCTTTATTTATCTTATCCCC 59.605 40.741 0.00 0.00 0.00 4.81
4089 4400 7.118535 TCTCGCATTAGTTATTTGTAACAAGCA 59.881 33.333 1.71 0.00 32.63 3.91
4176 4487 7.030165 GGCTATTTACAAGCTTCTTTTTCCTC 58.970 38.462 0.00 0.00 39.97 3.71
4480 4791 9.474920 TGTTACAAACAAATGAATCAAATCTCC 57.525 29.630 0.00 0.00 38.72 3.71
4688 4999 7.715265 ACTATTATTAAGTGCTTGATCGTGG 57.285 36.000 0.00 0.00 0.00 4.94
4980 5294 7.552459 ACCAACATTGTTTACTACAGCTTTTT 58.448 30.769 0.00 0.00 38.19 1.94
5476 5790 6.073602 GCTTATATGATGTTCTCGATTGCACA 60.074 38.462 0.00 0.00 0.00 4.57
5593 7687 5.343058 CGATGTGCCATTAAAGTGTTCAAAG 59.657 40.000 0.00 0.00 0.00 2.77
5619 7713 6.910433 CGAAAGAAGTTAAAAGCTTAAGCACA 59.090 34.615 28.39 8.10 45.16 4.57
5626 7727 2.859165 AAGCTTAAGCACAGTAGCCA 57.141 45.000 28.39 0.00 45.16 4.75
5641 7742 5.013183 ACAGTAGCCAGTTCCTTGTTTCTAT 59.987 40.000 0.00 0.00 0.00 1.98
5643 7744 3.690460 AGCCAGTTCCTTGTTTCTATGG 58.310 45.455 0.00 0.00 0.00 2.74
5674 7775 2.036475 AGTTGCCCATATGTAGCTCTCG 59.964 50.000 14.11 0.00 0.00 4.04
5819 7920 5.564550 ACTGTAAATGGAGTTGCTTCAGAT 58.435 37.500 0.00 0.00 0.00 2.90
5863 7964 5.869649 TCTACATTACAGGCTATTGCAGA 57.130 39.130 0.66 0.00 41.91 4.26
5877 8012 0.250858 TGCAGATTGGTCCACACCTG 60.251 55.000 0.00 0.39 44.17 4.00
5878 8013 1.589716 GCAGATTGGTCCACACCTGC 61.590 60.000 18.13 18.13 44.17 4.85
5879 8014 0.250858 CAGATTGGTCCACACCTGCA 60.251 55.000 0.00 0.00 44.17 4.41
5880 8015 0.478072 AGATTGGTCCACACCTGCAA 59.522 50.000 0.00 0.00 44.17 4.08
5881 8016 0.883833 GATTGGTCCACACCTGCAAG 59.116 55.000 0.00 0.00 44.17 4.01
5882 8017 0.185901 ATTGGTCCACACCTGCAAGT 59.814 50.000 0.00 0.00 44.17 3.16
5883 8018 0.751277 TTGGTCCACACCTGCAAGTG 60.751 55.000 13.96 13.96 44.17 3.16
5890 8025 2.779282 CACCTGCAAGTGTCACACA 58.221 52.632 11.40 0.00 36.74 3.72
5891 8026 1.093972 CACCTGCAAGTGTCACACAA 58.906 50.000 11.40 0.00 36.74 3.33
5892 8027 1.094785 ACCTGCAAGTGTCACACAAC 58.905 50.000 11.40 0.00 36.74 3.32
5893 8028 1.340017 ACCTGCAAGTGTCACACAACT 60.340 47.619 11.40 0.00 36.74 3.16
5894 8029 1.745087 CCTGCAAGTGTCACACAACTT 59.255 47.619 11.40 0.00 36.74 2.66
5895 8030 2.942376 CCTGCAAGTGTCACACAACTTA 59.058 45.455 11.40 0.00 36.74 2.24
5896 8031 3.002656 CCTGCAAGTGTCACACAACTTAG 59.997 47.826 11.40 1.73 36.74 2.18
5897 8032 3.867857 TGCAAGTGTCACACAACTTAGA 58.132 40.909 11.40 0.00 36.74 2.10
5898 8033 4.257731 TGCAAGTGTCACACAACTTAGAA 58.742 39.130 11.40 0.00 36.74 2.10
5899 8034 4.332543 TGCAAGTGTCACACAACTTAGAAG 59.667 41.667 11.40 0.00 36.74 2.85
5900 8035 4.786609 GCAAGTGTCACACAACTTAGAAGC 60.787 45.833 11.40 0.00 36.74 3.86
5901 8036 4.408182 AGTGTCACACAACTTAGAAGCT 57.592 40.909 11.40 0.00 36.74 3.74
5902 8037 4.770795 AGTGTCACACAACTTAGAAGCTT 58.229 39.130 11.40 0.00 36.74 3.74
5903 8038 4.811557 AGTGTCACACAACTTAGAAGCTTC 59.188 41.667 19.11 19.11 36.74 3.86
5904 8039 4.570772 GTGTCACACAACTTAGAAGCTTCA 59.429 41.667 27.57 11.42 34.08 3.02
5905 8040 5.237344 GTGTCACACAACTTAGAAGCTTCAT 59.763 40.000 27.57 15.02 34.08 2.57
5906 8041 5.822519 TGTCACACAACTTAGAAGCTTCATT 59.177 36.000 27.57 11.18 0.00 2.57
5907 8042 6.138761 GTCACACAACTTAGAAGCTTCATTG 58.861 40.000 27.57 23.89 0.00 2.82
5908 8043 5.239306 TCACACAACTTAGAAGCTTCATTGG 59.761 40.000 27.57 18.45 0.00 3.16
5909 8044 5.009010 CACACAACTTAGAAGCTTCATTGGT 59.991 40.000 27.57 18.94 0.00 3.67
5910 8045 5.239525 ACACAACTTAGAAGCTTCATTGGTC 59.760 40.000 27.57 0.00 0.00 4.02
5911 8046 5.471456 CACAACTTAGAAGCTTCATTGGTCT 59.529 40.000 27.57 8.13 0.00 3.85
5921 8056 3.285484 CTTCATTGGTCTTGCAGGCTAT 58.715 45.455 0.00 0.00 0.00 2.97
5925 8060 2.710096 TGGTCTTGCAGGCTATTACC 57.290 50.000 0.00 0.00 0.00 2.85
5964 8099 6.030727 ACTATGGAATTATTTGGAAGCCCT 57.969 37.500 0.00 0.00 0.00 5.19
6028 8163 3.305608 GCAATGACCCTTTGAACTTCTGG 60.306 47.826 0.00 0.00 0.00 3.86
6102 8239 4.649088 GGACAACCCATTGCCTTATAAC 57.351 45.455 0.00 0.00 39.66 1.89
6103 8240 3.383505 GGACAACCCATTGCCTTATAACC 59.616 47.826 0.00 0.00 39.66 2.85
6104 8241 4.278310 GACAACCCATTGCCTTATAACCT 58.722 43.478 0.00 0.00 39.66 3.50
6105 8242 5.442391 GACAACCCATTGCCTTATAACCTA 58.558 41.667 0.00 0.00 39.66 3.08
6106 8243 5.833340 ACAACCCATTGCCTTATAACCTAA 58.167 37.500 0.00 0.00 39.66 2.69
6107 8244 5.655090 ACAACCCATTGCCTTATAACCTAAC 59.345 40.000 0.00 0.00 39.66 2.34
6108 8245 5.727243 ACCCATTGCCTTATAACCTAACT 57.273 39.130 0.00 0.00 0.00 2.24
6109 8246 6.087276 ACCCATTGCCTTATAACCTAACTT 57.913 37.500 0.00 0.00 0.00 2.66
6110 8247 6.499436 ACCCATTGCCTTATAACCTAACTTT 58.501 36.000 0.00 0.00 0.00 2.66
6111 8248 7.645002 ACCCATTGCCTTATAACCTAACTTTA 58.355 34.615 0.00 0.00 0.00 1.85
6112 8249 8.286620 ACCCATTGCCTTATAACCTAACTTTAT 58.713 33.333 0.00 0.00 0.00 1.40
6113 8250 9.802039 CCCATTGCCTTATAACCTAACTTTATA 57.198 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.977293 GGTTCAACCTTAAAAAGTTTCAGCTTA 59.023 33.333 0.00 0.00 34.73 3.09
20 21 6.816640 GGTTCAACCTTAAAAAGTTTCAGCTT 59.183 34.615 0.00 0.00 34.73 3.74
147 149 2.154462 GATGTGGGGAAGACTTGTGTG 58.846 52.381 0.00 0.00 0.00 3.82
158 160 0.907230 TGTCGGTGATGATGTGGGGA 60.907 55.000 0.00 0.00 0.00 4.81
193 195 0.749818 TTTGGTGAAGGCAACGCTGA 60.750 50.000 0.00 0.00 46.39 4.26
199 201 4.274602 TCGTAGTATTTGGTGAAGGCAA 57.725 40.909 0.00 0.00 0.00 4.52
210 212 4.563140 TCCCAAGCCTTTCGTAGTATTT 57.437 40.909 0.00 0.00 0.00 1.40
248 250 9.989869 GCTTGATTTTGGTAAAGTCTCTAATAC 57.010 33.333 0.00 0.00 0.00 1.89
249 251 9.959721 AGCTTGATTTTGGTAAAGTCTCTAATA 57.040 29.630 0.00 0.00 0.00 0.98
250 252 8.870075 AGCTTGATTTTGGTAAAGTCTCTAAT 57.130 30.769 0.00 0.00 0.00 1.73
251 253 9.216117 GTAGCTTGATTTTGGTAAAGTCTCTAA 57.784 33.333 0.00 0.00 0.00 2.10
252 254 8.594550 AGTAGCTTGATTTTGGTAAAGTCTCTA 58.405 33.333 0.00 0.00 0.00 2.43
253 255 7.454225 AGTAGCTTGATTTTGGTAAAGTCTCT 58.546 34.615 0.00 0.00 0.00 3.10
254 256 7.674471 AGTAGCTTGATTTTGGTAAAGTCTC 57.326 36.000 0.00 0.00 0.00 3.36
255 257 8.465273 AAAGTAGCTTGATTTTGGTAAAGTCT 57.535 30.769 0.00 0.00 0.00 3.24
262 264 9.696917 CAGAAAATAAAGTAGCTTGATTTTGGT 57.303 29.630 17.09 6.11 41.75 3.67
263 265 9.912634 TCAGAAAATAAAGTAGCTTGATTTTGG 57.087 29.630 17.09 11.26 41.75 3.28
306 310 6.989646 GCGATGGCCGTAGATGTTGAAAAC 62.990 50.000 9.56 0.00 43.79 2.43
308 312 2.276201 CGATGGCCGTAGATGTTGAAA 58.724 47.619 0.00 0.00 0.00 2.69
309 313 1.934589 CGATGGCCGTAGATGTTGAA 58.065 50.000 0.00 0.00 0.00 2.69
310 314 0.529773 GCGATGGCCGTAGATGTTGA 60.530 55.000 9.56 0.00 41.15 3.18
311 315 1.821241 CGCGATGGCCGTAGATGTTG 61.821 60.000 9.56 0.00 41.15 3.33
313 317 2.011741 TTCGCGATGGCCGTAGATGT 62.012 55.000 10.88 0.00 41.15 3.06
314 318 1.299850 TTCGCGATGGCCGTAGATG 60.300 57.895 10.88 0.35 41.15 2.90
316 320 2.103538 GTTCGCGATGGCCGTAGA 59.896 61.111 10.88 1.09 41.15 2.59
317 321 2.960129 GGTTCGCGATGGCCGTAG 60.960 66.667 10.88 0.00 41.15 3.51
318 322 3.298115 TTGGTTCGCGATGGCCGTA 62.298 57.895 10.88 2.73 41.15 4.02
320 324 4.160635 GTTGGTTCGCGATGGCCG 62.161 66.667 10.88 0.00 42.21 6.13
321 325 3.810896 GGTTGGTTCGCGATGGCC 61.811 66.667 10.88 13.69 35.02 5.36
322 326 2.746277 AGGTTGGTTCGCGATGGC 60.746 61.111 10.88 3.17 0.00 4.40
323 327 1.671054 ACAGGTTGGTTCGCGATGG 60.671 57.895 10.88 0.00 0.00 3.51
324 328 1.497278 CACAGGTTGGTTCGCGATG 59.503 57.895 10.88 5.75 0.00 3.84
326 330 2.280524 CCACAGGTTGGTTCGCGA 60.281 61.111 3.71 3.71 41.10 5.87
336 340 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
337 341 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
338 342 2.571653 TCCTCTAACCATCCAACCACAG 59.428 50.000 0.00 0.00 0.00 3.66
339 343 2.626785 TCCTCTAACCATCCAACCACA 58.373 47.619 0.00 0.00 0.00 4.17
340 344 3.009143 AGTTCCTCTAACCATCCAACCAC 59.991 47.826 0.00 0.00 39.03 4.16
341 345 3.009033 CAGTTCCTCTAACCATCCAACCA 59.991 47.826 0.00 0.00 39.03 3.67
342 346 3.009143 ACAGTTCCTCTAACCATCCAACC 59.991 47.826 0.00 0.00 39.03 3.77
344 348 3.009033 CCACAGTTCCTCTAACCATCCAA 59.991 47.826 0.00 0.00 39.03 3.53
345 349 2.571653 CCACAGTTCCTCTAACCATCCA 59.428 50.000 0.00 0.00 39.03 3.41
346 350 2.572104 ACCACAGTTCCTCTAACCATCC 59.428 50.000 0.00 0.00 39.03 3.51
349 353 3.773119 GGATACCACAGTTCCTCTAACCA 59.227 47.826 0.00 0.00 39.03 3.67
365 369 4.590590 AATCCTGCTGATCTGGGGATACC 61.591 52.174 1.46 0.00 45.30 2.73
366 370 1.722034 TCCTGCTGATCTGGGGATAC 58.278 55.000 1.46 0.00 34.80 2.24
368 372 1.704070 GAATCCTGCTGATCTGGGGAT 59.296 52.381 1.46 3.52 38.29 3.85
369 373 1.135094 GAATCCTGCTGATCTGGGGA 58.865 55.000 1.46 1.32 34.80 4.81
370 374 0.841961 TGAATCCTGCTGATCTGGGG 59.158 55.000 1.46 0.00 34.80 4.96
371 375 2.092538 ACTTGAATCCTGCTGATCTGGG 60.093 50.000 1.46 0.00 34.80 4.45
373 377 3.204526 GGACTTGAATCCTGCTGATCTG 58.795 50.000 0.00 0.00 35.68 2.90
374 378 3.557228 GGACTTGAATCCTGCTGATCT 57.443 47.619 0.00 0.00 35.68 2.75
383 387 2.208431 CGAGCATCAGGACTTGAATCC 58.792 52.381 0.00 0.00 39.77 3.01
384 388 1.596727 GCGAGCATCAGGACTTGAATC 59.403 52.381 0.00 0.00 39.77 2.52
385 389 1.065926 TGCGAGCATCAGGACTTGAAT 60.066 47.619 0.00 0.00 39.77 2.57
386 390 0.321346 TGCGAGCATCAGGACTTGAA 59.679 50.000 0.00 0.00 39.77 2.69
387 391 0.538584 ATGCGAGCATCAGGACTTGA 59.461 50.000 4.52 0.00 40.85 3.02
388 392 1.376543 AATGCGAGCATCAGGACTTG 58.623 50.000 11.26 0.00 35.31 3.16
389 393 2.119801 AAATGCGAGCATCAGGACTT 57.880 45.000 11.26 0.00 35.31 3.01
390 394 2.988010 TAAATGCGAGCATCAGGACT 57.012 45.000 11.26 0.00 35.31 3.85
391 395 3.058639 GGAATAAATGCGAGCATCAGGAC 60.059 47.826 11.26 4.00 35.31 3.85
392 396 3.141398 GGAATAAATGCGAGCATCAGGA 58.859 45.455 11.26 0.00 35.31 3.86
393 397 3.058432 CAGGAATAAATGCGAGCATCAGG 60.058 47.826 11.26 0.00 35.31 3.86
394 398 3.811497 TCAGGAATAAATGCGAGCATCAG 59.189 43.478 11.26 0.00 35.31 2.90
395 399 3.807553 TCAGGAATAAATGCGAGCATCA 58.192 40.909 11.26 3.11 35.31 3.07
396 400 4.818534 TTCAGGAATAAATGCGAGCATC 57.181 40.909 11.26 0.00 35.31 3.91
397 401 5.779529 AATTCAGGAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
398 402 5.581126 AAATTCAGGAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
399 403 8.579682 AAATAAATTCAGGAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
400 404 9.734620 TGAAATAAATTCAGGAATAAATGCGAG 57.265 29.630 0.00 0.00 43.08 5.03
414 418 7.309177 TCGCCGAAAATTCTGAAATAAATTCA 58.691 30.769 0.00 0.00 45.71 2.57
415 419 7.734538 TCGCCGAAAATTCTGAAATAAATTC 57.265 32.000 0.00 0.00 38.60 2.17
416 420 7.254084 GCATCGCCGAAAATTCTGAAATAAATT 60.254 33.333 0.00 0.00 0.00 1.82
417 421 6.198966 GCATCGCCGAAAATTCTGAAATAAAT 59.801 34.615 0.00 0.00 0.00 1.40
418 422 5.514914 GCATCGCCGAAAATTCTGAAATAAA 59.485 36.000 0.00 0.00 0.00 1.40
419 423 5.034152 GCATCGCCGAAAATTCTGAAATAA 58.966 37.500 0.00 0.00 0.00 1.40
420 424 4.597079 GCATCGCCGAAAATTCTGAAATA 58.403 39.130 0.00 0.00 0.00 1.40
421 425 3.438360 GCATCGCCGAAAATTCTGAAAT 58.562 40.909 0.00 0.00 0.00 2.17
422 426 2.727607 CGCATCGCCGAAAATTCTGAAA 60.728 45.455 0.00 0.00 0.00 2.69
423 427 1.202020 CGCATCGCCGAAAATTCTGAA 60.202 47.619 0.00 0.00 0.00 3.02
424 428 0.373370 CGCATCGCCGAAAATTCTGA 59.627 50.000 0.00 0.00 0.00 3.27
425 429 2.845600 CGCATCGCCGAAAATTCTG 58.154 52.632 0.00 0.00 0.00 3.02
437 441 1.135046 CTTCCACTAGATGCGCATCG 58.865 55.000 37.09 28.21 42.48 3.84
438 442 1.069204 TCCTTCCACTAGATGCGCATC 59.931 52.381 37.29 37.29 38.09 3.91
439 443 1.069823 CTCCTTCCACTAGATGCGCAT 59.930 52.381 25.66 25.66 0.00 4.73
440 444 0.461548 CTCCTTCCACTAGATGCGCA 59.538 55.000 14.96 14.96 0.00 6.09
441 445 0.747255 TCTCCTTCCACTAGATGCGC 59.253 55.000 0.00 0.00 0.00 6.09
442 446 1.268794 CGTCTCCTTCCACTAGATGCG 60.269 57.143 0.00 0.00 0.00 4.73
443 447 1.751924 ACGTCTCCTTCCACTAGATGC 59.248 52.381 0.00 0.00 30.83 3.91
444 448 2.359531 GGACGTCTCCTTCCACTAGATG 59.640 54.545 16.46 0.00 33.07 2.90
445 449 2.657143 GGACGTCTCCTTCCACTAGAT 58.343 52.381 16.46 0.00 33.07 1.98
446 450 1.340795 GGGACGTCTCCTTCCACTAGA 60.341 57.143 16.46 0.00 36.68 2.43
447 451 1.104630 GGGACGTCTCCTTCCACTAG 58.895 60.000 16.46 0.00 36.68 2.57
448 452 0.324091 GGGGACGTCTCCTTCCACTA 60.324 60.000 27.83 0.00 36.68 2.74
449 453 1.609794 GGGGACGTCTCCTTCCACT 60.610 63.158 27.83 0.00 36.68 4.00
450 454 2.979649 GGGGACGTCTCCTTCCAC 59.020 66.667 27.83 0.17 36.68 4.02
474 478 1.746220 AGTCAGCATAGACACCTCGTC 59.254 52.381 6.72 0.00 45.77 4.20
475 479 1.840737 AGTCAGCATAGACACCTCGT 58.159 50.000 6.72 0.00 40.98 4.18
476 480 2.792890 CGAAGTCAGCATAGACACCTCG 60.793 54.545 6.72 7.40 40.98 4.63
477 481 2.164624 ACGAAGTCAGCATAGACACCTC 59.835 50.000 6.72 0.78 29.74 3.85
478 482 2.171840 ACGAAGTCAGCATAGACACCT 58.828 47.619 6.72 0.00 29.74 4.00
479 483 2.656560 ACGAAGTCAGCATAGACACC 57.343 50.000 6.72 0.00 29.74 4.16
480 484 6.648725 AATTTACGAAGTCAGCATAGACAC 57.351 37.500 6.72 0.82 43.93 3.67
481 485 6.871492 TGAAATTTACGAAGTCAGCATAGACA 59.129 34.615 6.72 0.00 43.93 3.41
482 486 7.290857 TGAAATTTACGAAGTCAGCATAGAC 57.709 36.000 0.00 0.00 43.93 2.59
483 487 7.817478 TCTTGAAATTTACGAAGTCAGCATAGA 59.183 33.333 0.00 0.00 43.93 1.98
484 488 7.963981 TCTTGAAATTTACGAAGTCAGCATAG 58.036 34.615 0.00 0.00 43.93 2.23
485 489 7.899178 TCTTGAAATTTACGAAGTCAGCATA 57.101 32.000 0.00 0.00 43.93 3.14
486 490 6.801539 TCTTGAAATTTACGAAGTCAGCAT 57.198 33.333 0.00 0.00 43.93 3.79
487 491 6.426633 TCATCTTGAAATTTACGAAGTCAGCA 59.573 34.615 0.00 0.00 43.93 4.41
488 492 6.831769 TCATCTTGAAATTTACGAAGTCAGC 58.168 36.000 0.00 0.00 43.93 4.26
491 495 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
493 497 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
494 498 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
495 499 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
496 500 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
497 501 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
498 502 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
499 503 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
500 504 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
501 505 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
502 506 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
503 507 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
504 508 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
505 509 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
506 510 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
507 511 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
508 512 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
509 513 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
510 514 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
511 515 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
512 516 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
513 517 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
514 518 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
515 519 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
516 520 1.355066 CTTCGAAAGACTGAGCCGGC 61.355 60.000 21.89 21.89 41.84 6.13
517 521 0.243907 TCTTCGAAAGACTGAGCCGG 59.756 55.000 0.00 0.00 41.84 6.13
518 522 1.923204 CATCTTCGAAAGACTGAGCCG 59.077 52.381 0.00 0.00 41.01 5.52
519 523 1.663135 GCATCTTCGAAAGACTGAGCC 59.337 52.381 0.00 0.00 41.01 4.70
520 524 2.602660 GAGCATCTTCGAAAGACTGAGC 59.397 50.000 0.00 3.03 41.01 4.26
521 525 3.842820 TGAGCATCTTCGAAAGACTGAG 58.157 45.455 0.00 0.00 41.01 3.35
522 526 3.942130 TGAGCATCTTCGAAAGACTGA 57.058 42.857 0.00 0.00 41.01 3.41
523 527 4.744137 CCTATGAGCATCTTCGAAAGACTG 59.256 45.833 0.00 0.00 41.01 3.51
524 528 4.202202 CCCTATGAGCATCTTCGAAAGACT 60.202 45.833 0.00 0.00 41.01 3.24
525 529 4.054671 CCCTATGAGCATCTTCGAAAGAC 58.945 47.826 0.00 0.00 41.01 3.01
526 530 3.960755 TCCCTATGAGCATCTTCGAAAGA 59.039 43.478 0.00 0.00 42.69 2.52
527 531 4.327982 TCCCTATGAGCATCTTCGAAAG 57.672 45.455 0.00 0.00 34.92 2.62
528 532 4.963318 ATCCCTATGAGCATCTTCGAAA 57.037 40.909 0.00 0.00 34.92 3.46
529 533 4.464244 CCTATCCCTATGAGCATCTTCGAA 59.536 45.833 0.00 0.00 34.92 3.71
530 534 4.019858 CCTATCCCTATGAGCATCTTCGA 58.980 47.826 0.00 0.00 34.92 3.71
531 535 3.131933 CCCTATCCCTATGAGCATCTTCG 59.868 52.174 0.00 0.00 34.92 3.79
532 536 4.081198 CACCCTATCCCTATGAGCATCTTC 60.081 50.000 0.00 0.00 34.92 2.87
533 537 3.843027 CACCCTATCCCTATGAGCATCTT 59.157 47.826 0.00 0.00 34.92 2.40
534 538 3.181402 ACACCCTATCCCTATGAGCATCT 60.181 47.826 0.00 0.00 34.92 2.90
535 539 3.055530 CACACCCTATCCCTATGAGCATC 60.056 52.174 0.00 0.00 0.00 3.91
536 540 2.909006 CACACCCTATCCCTATGAGCAT 59.091 50.000 0.00 0.00 0.00 3.79
537 541 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
538 542 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
539 543 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
540 544 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
541 545 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
542 546 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
543 547 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
544 548 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
545 549 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
546 550 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
547 551 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
548 552 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
549 553 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
552 556 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
553 557 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
554 558 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
555 559 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
556 560 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
557 561 0.787787 TCTTATGAACGCACACACGC 59.212 50.000 0.00 0.00 36.19 5.34
558 562 2.058798 ACTCTTATGAACGCACACACG 58.941 47.619 0.00 0.00 39.50 4.49
559 563 3.057019 TCACTCTTATGAACGCACACAC 58.943 45.455 0.00 0.00 0.00 3.82
560 564 3.243737 ACTCACTCTTATGAACGCACACA 60.244 43.478 0.00 0.00 0.00 3.72
561 565 3.121944 CACTCACTCTTATGAACGCACAC 59.878 47.826 0.00 0.00 0.00 3.82
562 566 3.243737 ACACTCACTCTTATGAACGCACA 60.244 43.478 0.00 0.00 0.00 4.57
563 567 3.318017 ACACTCACTCTTATGAACGCAC 58.682 45.455 0.00 0.00 0.00 5.34
564 568 3.660501 ACACTCACTCTTATGAACGCA 57.339 42.857 0.00 0.00 0.00 5.24
565 569 4.026475 GCATACACTCACTCTTATGAACGC 60.026 45.833 0.00 0.00 0.00 4.84
566 570 4.205181 CGCATACACTCACTCTTATGAACG 59.795 45.833 0.00 0.00 0.00 3.95
567 571 4.026475 GCGCATACACTCACTCTTATGAAC 60.026 45.833 0.30 0.00 0.00 3.18
568 572 4.112634 GCGCATACACTCACTCTTATGAA 58.887 43.478 0.30 0.00 0.00 2.57
569 573 3.706698 GCGCATACACTCACTCTTATGA 58.293 45.455 0.30 0.00 0.00 2.15
570 574 2.469147 CGCGCATACACTCACTCTTATG 59.531 50.000 8.75 0.00 0.00 1.90
571 575 2.099263 ACGCGCATACACTCACTCTTAT 59.901 45.455 5.73 0.00 0.00 1.73
572 576 1.471287 ACGCGCATACACTCACTCTTA 59.529 47.619 5.73 0.00 0.00 2.10
573 577 0.243907 ACGCGCATACACTCACTCTT 59.756 50.000 5.73 0.00 0.00 2.85
574 578 0.456824 CACGCGCATACACTCACTCT 60.457 55.000 5.73 0.00 0.00 3.24
575 579 0.732880 ACACGCGCATACACTCACTC 60.733 55.000 5.73 0.00 0.00 3.51
576 580 0.524414 TACACGCGCATACACTCACT 59.476 50.000 5.73 0.00 0.00 3.41
577 581 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
578 582 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
579 583 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
580 584 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
581 585 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
582 586 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
583 587 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
584 588 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
585 589 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
586 590 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
589 593 1.653679 CGCAAACGCTCATATACACGC 60.654 52.381 0.00 0.00 0.00 5.34
590 594 1.586578 ACGCAAACGCTCATATACACG 59.413 47.619 0.00 0.00 45.53 4.49
591 595 2.858344 AGACGCAAACGCTCATATACAC 59.142 45.455 0.00 0.00 45.53 2.90
592 596 2.857748 CAGACGCAAACGCTCATATACA 59.142 45.455 0.00 0.00 45.53 2.29
593 597 2.858344 ACAGACGCAAACGCTCATATAC 59.142 45.455 0.00 0.00 45.53 1.47
594 598 3.159353 ACAGACGCAAACGCTCATATA 57.841 42.857 0.00 0.00 45.53 0.86
595 599 2.010145 ACAGACGCAAACGCTCATAT 57.990 45.000 0.00 0.00 45.53 1.78
596 600 2.094906 AGTACAGACGCAAACGCTCATA 60.095 45.455 0.00 0.00 45.53 2.15
597 601 1.068474 GTACAGACGCAAACGCTCAT 58.932 50.000 0.00 0.00 45.53 2.90
598 602 0.031585 AGTACAGACGCAAACGCTCA 59.968 50.000 0.00 0.00 45.53 4.26
599 603 0.435008 CAGTACAGACGCAAACGCTC 59.565 55.000 0.00 0.00 45.53 5.03
600 604 0.249322 ACAGTACAGACGCAAACGCT 60.249 50.000 0.00 0.00 45.53 5.07
601 605 0.111266 CACAGTACAGACGCAAACGC 60.111 55.000 0.00 0.00 45.53 4.84
603 607 4.505191 TCTTAACACAGTACAGACGCAAAC 59.495 41.667 0.00 0.00 0.00 2.93
604 608 4.684877 TCTTAACACAGTACAGACGCAAA 58.315 39.130 0.00 0.00 0.00 3.68
605 609 4.310357 TCTTAACACAGTACAGACGCAA 57.690 40.909 0.00 0.00 0.00 4.85
606 610 3.994204 TCTTAACACAGTACAGACGCA 57.006 42.857 0.00 0.00 0.00 5.24
607 611 5.646467 TTTTCTTAACACAGTACAGACGC 57.354 39.130 0.00 0.00 0.00 5.19
628 632 2.871096 TGATGCCCGTAGAGGTTTTT 57.129 45.000 0.00 0.00 38.74 1.94
629 633 2.643551 CATGATGCCCGTAGAGGTTTT 58.356 47.619 0.00 0.00 38.74 2.43
630 634 1.134098 CCATGATGCCCGTAGAGGTTT 60.134 52.381 0.00 0.00 38.74 3.27
631 635 0.469917 CCATGATGCCCGTAGAGGTT 59.530 55.000 0.00 0.00 38.74 3.50
632 636 0.398522 TCCATGATGCCCGTAGAGGT 60.399 55.000 0.00 0.00 38.74 3.85
633 637 0.034059 GTCCATGATGCCCGTAGAGG 59.966 60.000 0.00 0.00 40.63 3.69
634 638 0.034059 GGTCCATGATGCCCGTAGAG 59.966 60.000 0.00 0.00 0.00 2.43
635 639 0.689412 TGGTCCATGATGCCCGTAGA 60.689 55.000 0.00 0.00 0.00 2.59
636 640 0.250038 CTGGTCCATGATGCCCGTAG 60.250 60.000 0.00 0.00 0.00 3.51
637 641 1.829456 CTGGTCCATGATGCCCGTA 59.171 57.895 0.00 0.00 0.00 4.02
638 642 2.591753 CTGGTCCATGATGCCCGT 59.408 61.111 0.00 0.00 0.00 5.28
639 643 2.903855 GCTGGTCCATGATGCCCG 60.904 66.667 0.00 0.00 0.00 6.13
640 644 2.520260 GGCTGGTCCATGATGCCC 60.520 66.667 8.41 0.00 37.81 5.36
641 645 2.276409 TGGCTGGTCCATGATGCC 59.724 61.111 12.04 12.04 40.72 4.40
654 658 3.589288 GGGGAGATTATGGTAAGATGGCT 59.411 47.826 0.00 0.00 0.00 4.75
663 667 3.251484 ACGATGATGGGGAGATTATGGT 58.749 45.455 0.00 0.00 0.00 3.55
664 668 3.369892 GGACGATGATGGGGAGATTATGG 60.370 52.174 0.00 0.00 0.00 2.74
665 669 3.261643 TGGACGATGATGGGGAGATTATG 59.738 47.826 0.00 0.00 0.00 1.90
666 670 3.261897 GTGGACGATGATGGGGAGATTAT 59.738 47.826 0.00 0.00 0.00 1.28
667 671 2.632996 GTGGACGATGATGGGGAGATTA 59.367 50.000 0.00 0.00 0.00 1.75
668 672 1.417890 GTGGACGATGATGGGGAGATT 59.582 52.381 0.00 0.00 0.00 2.40
669 673 1.051812 GTGGACGATGATGGGGAGAT 58.948 55.000 0.00 0.00 0.00 2.75
670 674 1.048724 GGTGGACGATGATGGGGAGA 61.049 60.000 0.00 0.00 0.00 3.71
671 675 1.447643 GGTGGACGATGATGGGGAG 59.552 63.158 0.00 0.00 0.00 4.30
672 676 3.642078 GGTGGACGATGATGGGGA 58.358 61.111 0.00 0.00 0.00 4.81
676 680 4.963683 GACCTGACGGTGGACGATGATG 62.964 59.091 0.00 0.00 45.73 3.07
677 681 2.893617 GACCTGACGGTGGACGATGAT 61.894 57.143 0.00 0.00 45.73 2.45
678 682 1.592400 GACCTGACGGTGGACGATGA 61.592 60.000 0.00 0.00 45.73 2.92
679 683 1.153823 GACCTGACGGTGGACGATG 60.154 63.158 0.00 0.00 45.73 3.84
680 684 2.348888 GGACCTGACGGTGGACGAT 61.349 63.158 0.00 0.00 45.73 3.73
681 685 2.987547 GGACCTGACGGTGGACGA 60.988 66.667 0.00 0.00 45.73 4.20
682 686 4.065281 GGGACCTGACGGTGGACG 62.065 72.222 0.00 0.00 45.73 4.79
683 687 0.974010 TATGGGACCTGACGGTGGAC 60.974 60.000 0.00 0.00 45.73 4.02
684 688 0.252330 TTATGGGACCTGACGGTGGA 60.252 55.000 0.00 0.00 45.73 4.02
685 689 0.616371 TTTATGGGACCTGACGGTGG 59.384 55.000 0.00 0.00 45.73 4.61
686 690 2.561569 GATTTATGGGACCTGACGGTG 58.438 52.381 0.00 0.00 45.73 4.94
714 718 2.202570 CGTGGCGAGGAACTACGG 60.203 66.667 0.00 0.00 41.55 4.02
795 799 0.032540 GTGGTTCGGACACGTAGGTT 59.967 55.000 0.00 0.00 41.85 3.50
828 832 2.280186 GACCGCCGGATCCATGAC 60.280 66.667 11.71 0.00 0.00 3.06
840 844 1.069935 GGGAAGCTAGATGGACCGC 59.930 63.158 0.00 0.00 0.00 5.68
877 881 6.134040 AGTAGAATAAAGTGGTAGTCGCTC 57.866 41.667 0.00 0.00 34.68 5.03
1127 1131 1.183549 TCTCCAGCTCCTCCGTTAAC 58.816 55.000 0.00 0.00 0.00 2.01
1163 1167 4.501198 GCTCAAGCATACGAAACTAGAGTC 59.499 45.833 0.00 0.00 41.59 3.36
1272 1283 4.128554 ACACAACTAAATTCGTCGCAAG 57.871 40.909 0.00 0.00 0.00 4.01
1347 1358 1.005340 GCAAGAAGCAGATCAGACCG 58.995 55.000 0.00 0.00 44.79 4.79
1393 1406 3.679389 CTGCCAAACCTTGACAGATACT 58.321 45.455 0.00 0.00 42.87 2.12
1401 1414 3.447040 GCAGCTGCCAAACCTTGA 58.553 55.556 28.76 0.00 34.31 3.02
1416 1429 5.991933 TGCAGAAAAATTTAGGTATGGCA 57.008 34.783 0.00 0.00 0.00 4.92
1461 1474 9.903682 TGTACTAGTGACAAAGTTTACATCTAC 57.096 33.333 5.39 0.00 0.00 2.59
1463 1476 9.424319 CATGTACTAGTGACAAAGTTTACATCT 57.576 33.333 5.39 0.00 27.52 2.90
1464 1477 9.204570 ACATGTACTAGTGACAAAGTTTACATC 57.795 33.333 5.39 0.00 27.52 3.06
1469 1482 9.609346 AGTTTACATGTACTAGTGACAAAGTTT 57.391 29.630 4.68 0.00 0.00 2.66
1470 1483 9.609346 AAGTTTACATGTACTAGTGACAAAGTT 57.391 29.630 4.68 2.45 0.00 2.66
1471 1484 9.609346 AAAGTTTACATGTACTAGTGACAAAGT 57.391 29.630 4.68 10.91 0.00 2.66
1472 1485 9.864034 CAAAGTTTACATGTACTAGTGACAAAG 57.136 33.333 4.68 6.28 0.00 2.77
1473 1486 9.386010 ACAAAGTTTACATGTACTAGTGACAAA 57.614 29.630 4.68 0.00 0.00 2.83
1474 1487 8.951787 ACAAAGTTTACATGTACTAGTGACAA 57.048 30.769 4.68 0.00 0.00 3.18
1475 1488 8.198778 TGACAAAGTTTACATGTACTAGTGACA 58.801 33.333 4.68 8.71 0.00 3.58
1476 1489 8.485591 GTGACAAAGTTTACATGTACTAGTGAC 58.514 37.037 4.68 6.59 0.00 3.67
1477 1490 8.418662 AGTGACAAAGTTTACATGTACTAGTGA 58.581 33.333 4.68 0.00 0.00 3.41
1478 1491 8.487970 CAGTGACAAAGTTTACATGTACTAGTG 58.512 37.037 4.68 7.75 0.00 2.74
1479 1492 7.656137 CCAGTGACAAAGTTTACATGTACTAGT 59.344 37.037 4.68 5.85 0.00 2.57
1480 1493 7.656137 ACCAGTGACAAAGTTTACATGTACTAG 59.344 37.037 4.68 2.72 0.00 2.57
1481 1494 7.502696 ACCAGTGACAAAGTTTACATGTACTA 58.497 34.615 4.68 0.00 0.00 1.82
1527 1541 3.799755 GCAACCAGGCCTAACGCG 61.800 66.667 3.98 3.53 38.94 6.01
1609 1623 7.973388 CGGATCATGTATTGGTGTGTTTAATTT 59.027 33.333 0.00 0.00 0.00 1.82
1622 1636 2.146342 GGCCAGTCGGATCATGTATTG 58.854 52.381 0.00 0.00 0.00 1.90
1651 1665 5.962433 AGAACAGATTGAGCAAAATGATGG 58.038 37.500 5.41 0.00 0.00 3.51
1653 1667 8.571461 TTAGAGAACAGATTGAGCAAAATGAT 57.429 30.769 5.41 0.00 0.00 2.45
1691 1705 1.202031 CGAGATTTTGTAACTGGCGGC 60.202 52.381 0.00 0.00 0.00 6.53
1709 1723 3.002862 CCACAATTGTTTCGACTTTCCGA 59.997 43.478 8.77 0.00 36.70 4.55
1771 1785 1.292992 CAGTGATTGCTATGCTCGCA 58.707 50.000 0.00 0.00 35.22 5.10
1894 1908 4.032104 GCTGCAAAACAAGTTCAGTTTCAG 59.968 41.667 0.00 0.00 38.17 3.02
1914 1928 1.668628 GGGCGGTAACAACATTTGCTG 60.669 52.381 0.00 0.00 0.00 4.41
1968 1982 2.099427 TCGGCAAGTACAACCAAAAACC 59.901 45.455 0.00 0.00 0.00 3.27
1983 1997 4.328536 AGGTATGTATTTGTGTTCGGCAA 58.671 39.130 0.00 0.00 0.00 4.52
2316 2335 9.685828 GAAACAACAAGCTTATAAACCAATGTA 57.314 29.630 0.00 0.00 0.00 2.29
2358 2377 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2359 2378 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2360 2379 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2361 2380 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2362 2381 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2363 2382 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2364 2383 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2365 2384 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2366 2385 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2367 2386 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2368 2387 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2369 2388 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2375 2394 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2376 2395 8.788325 AAAGTTAGTACAAAGTTGAGTCACTT 57.212 30.769 0.00 0.00 38.74 3.16
2377 2396 9.530633 CTAAAGTTAGTACAAAGTTGAGTCACT 57.469 33.333 0.00 0.00 0.00 3.41
2378 2397 9.310716 ACTAAAGTTAGTACAAAGTTGAGTCAC 57.689 33.333 1.81 0.00 41.92 3.67
2405 2424 9.736023 GTCTCAAAATAAGTGACTCAATTTTGT 57.264 29.630 27.30 8.05 44.18 2.83
2406 2425 8.895845 CGTCTCAAAATAAGTGACTCAATTTTG 58.104 33.333 25.10 25.10 44.73 2.44
2407 2426 8.076178 CCGTCTCAAAATAAGTGACTCAATTTT 58.924 33.333 10.89 10.89 33.07 1.82
2408 2427 7.444183 TCCGTCTCAAAATAAGTGACTCAATTT 59.556 33.333 0.00 0.00 0.00 1.82
2409 2428 6.934645 TCCGTCTCAAAATAAGTGACTCAATT 59.065 34.615 0.00 0.00 0.00 2.32
2410 2429 6.464222 TCCGTCTCAAAATAAGTGACTCAAT 58.536 36.000 0.00 0.00 0.00 2.57
2411 2430 5.849510 TCCGTCTCAAAATAAGTGACTCAA 58.150 37.500 0.00 0.00 0.00 3.02
2412 2431 5.462530 TCCGTCTCAAAATAAGTGACTCA 57.537 39.130 0.00 0.00 0.00 3.41
2413 2432 4.865365 CCTCCGTCTCAAAATAAGTGACTC 59.135 45.833 0.00 0.00 0.00 3.36
2414 2433 4.322801 CCCTCCGTCTCAAAATAAGTGACT 60.323 45.833 0.00 0.00 0.00 3.41
2415 2434 3.933332 CCCTCCGTCTCAAAATAAGTGAC 59.067 47.826 0.00 0.00 0.00 3.67
2416 2435 3.835978 TCCCTCCGTCTCAAAATAAGTGA 59.164 43.478 0.00 0.00 0.00 3.41
2417 2436 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
2418 2437 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2419 2438 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2420 2439 5.021458 ACTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
2421 2440 4.607239 ACTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
2422 2441 3.442076 ACTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
2423 2442 2.885616 ACTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
2424 2443 2.599408 ACTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
2425 2444 2.041350 AGAACTACTCCCTCCGTCTCAA 59.959 50.000 0.00 0.00 0.00 3.02
2426 2445 1.634459 AGAACTACTCCCTCCGTCTCA 59.366 52.381 0.00 0.00 0.00 3.27
2427 2446 2.291365 GAGAACTACTCCCTCCGTCTC 58.709 57.143 0.00 0.00 39.53 3.36
2428 2447 1.634459 TGAGAACTACTCCCTCCGTCT 59.366 52.381 0.00 0.00 44.34 4.18
2429 2448 2.125773 TGAGAACTACTCCCTCCGTC 57.874 55.000 0.00 0.00 44.34 4.79
2430 2449 2.025226 TCATGAGAACTACTCCCTCCGT 60.025 50.000 0.00 0.00 44.34 4.69
2431 2450 2.656002 TCATGAGAACTACTCCCTCCG 58.344 52.381 0.00 0.00 44.34 4.63
2503 2522 1.992519 GCATCAGCCTCCCATGGACT 61.993 60.000 15.22 1.67 33.58 3.85
2537 2556 1.769026 TGTGGCCAACTACAGCAAAA 58.231 45.000 7.24 0.00 0.00 2.44
2654 2673 8.091449 GCTATTGAACTGTACTAGCTATGGAAT 58.909 37.037 0.00 0.00 33.63 3.01
2699 2720 9.967451 TTTAGGACATTAGTATCCAATGTTTCA 57.033 29.630 2.54 0.00 44.55 2.69
2798 2819 7.010023 GTGAGCAGAAGTTATTAAAACTGACG 58.990 38.462 0.00 0.00 0.00 4.35
2898 2924 6.589907 CCCAACAAATAGGCACAAAAGATAAC 59.410 38.462 0.00 0.00 0.00 1.89
3022 3048 4.735369 ACCAAATGTGTATCCTGGAAACA 58.265 39.130 0.00 6.59 39.59 2.83
3251 3280 5.123027 GGCAAACCAACAAAAATCAAGTCAA 59.877 36.000 0.00 0.00 35.26 3.18
3306 3335 7.532682 TTTGCAAATAAAACTTCAAGGTGAC 57.467 32.000 8.05 0.00 0.00 3.67
3411 3464 7.601856 TCCAAACTATTTTTAATGCCAGTGAG 58.398 34.615 0.00 0.00 0.00 3.51
3703 3980 6.314400 CCATTCATGGGAAAATGTTTAGCAAG 59.686 38.462 0.00 0.00 44.31 4.01
3705 3982 5.732633 CCATTCATGGGAAAATGTTTAGCA 58.267 37.500 0.00 0.00 44.31 3.49
3892 4177 7.390718 GTGGAAGTGAATTGTAGTACCTGAAAT 59.609 37.037 0.00 0.00 0.00 2.17
3921 4206 2.930950 TGTCCCATATGCCTTGCTTAC 58.069 47.619 0.00 0.00 0.00 2.34
4014 4299 5.505173 ACCTGAAAACTCTTGAACACATG 57.495 39.130 0.00 0.00 0.00 3.21
4089 4400 6.832384 ACAATCTCAAAGCAGGATCATAATGT 59.168 34.615 0.00 0.00 0.00 2.71
4176 4487 1.813513 AGTTGATGGAGAACTTGCCG 58.186 50.000 0.00 0.00 28.94 5.69
4688 4999 2.012673 CAATCTAGGGCAGTTCTGTGC 58.987 52.381 1.78 0.00 43.19 4.57
4981 5295 9.559732 CACTGGGAATGAAGTAACAATATCATA 57.440 33.333 0.00 0.00 32.47 2.15
5593 7687 5.912955 TGCTTAAGCTTTTAACTTCTTTCGC 59.087 36.000 26.90 0.00 42.66 4.70
5619 7713 5.491982 CATAGAAACAAGGAACTGGCTACT 58.508 41.667 0.00 0.00 40.86 2.57
5641 7742 2.431683 GCAACTGGAGTCTGGCCA 59.568 61.111 4.71 4.71 0.00 5.36
5643 7744 2.360475 GGGCAACTGGAGTCTGGC 60.360 66.667 0.00 0.00 33.95 4.85
5674 7775 3.623060 TCAAGTGTTCAGTGTGCTCTTTC 59.377 43.478 0.00 0.00 0.00 2.62
5819 7920 9.551734 GTAGAAGGGTCTGTTTTAACTTAGAAA 57.448 33.333 0.00 0.00 35.12 2.52
5863 7964 0.185901 ACTTGCAGGTGTGGACCAAT 59.814 50.000 0.00 0.00 45.98 3.16
5877 8012 4.786609 GCTTCTAAGTTGTGTGACACTTGC 60.787 45.833 17.47 6.92 35.11 4.01
5878 8013 4.572389 AGCTTCTAAGTTGTGTGACACTTG 59.428 41.667 17.47 0.00 35.11 3.16
5879 8014 4.770795 AGCTTCTAAGTTGTGTGACACTT 58.229 39.130 17.47 5.63 35.11 3.16
5880 8015 4.408182 AGCTTCTAAGTTGTGTGACACT 57.592 40.909 17.47 0.00 35.11 3.55
5881 8016 4.570772 TGAAGCTTCTAAGTTGTGTGACAC 59.429 41.667 26.09 9.14 34.56 3.67
5882 8017 4.765273 TGAAGCTTCTAAGTTGTGTGACA 58.235 39.130 26.09 0.00 0.00 3.58
5883 8018 5.931441 ATGAAGCTTCTAAGTTGTGTGAC 57.069 39.130 26.09 0.00 0.00 3.67
5884 8019 5.239306 CCAATGAAGCTTCTAAGTTGTGTGA 59.761 40.000 26.09 2.65 0.00 3.58
5885 8020 5.009010 ACCAATGAAGCTTCTAAGTTGTGTG 59.991 40.000 26.09 14.24 0.00 3.82
5886 8021 5.133221 ACCAATGAAGCTTCTAAGTTGTGT 58.867 37.500 26.09 18.62 0.00 3.72
5887 8022 5.471456 AGACCAATGAAGCTTCTAAGTTGTG 59.529 40.000 26.09 18.15 0.00 3.33
5888 8023 5.625150 AGACCAATGAAGCTTCTAAGTTGT 58.375 37.500 26.09 15.28 0.00 3.32
5889 8024 6.376978 CAAGACCAATGAAGCTTCTAAGTTG 58.623 40.000 26.09 21.63 0.00 3.16
5890 8025 5.048434 GCAAGACCAATGAAGCTTCTAAGTT 60.048 40.000 26.09 13.11 0.00 2.66
5891 8026 4.457257 GCAAGACCAATGAAGCTTCTAAGT 59.543 41.667 26.09 17.48 0.00 2.24
5892 8027 4.456911 TGCAAGACCAATGAAGCTTCTAAG 59.543 41.667 26.09 15.05 0.00 2.18
5893 8028 4.397420 TGCAAGACCAATGAAGCTTCTAA 58.603 39.130 26.09 8.50 0.00 2.10
5894 8029 4.005650 CTGCAAGACCAATGAAGCTTCTA 58.994 43.478 26.09 13.60 34.07 2.10
5895 8030 2.818432 CTGCAAGACCAATGAAGCTTCT 59.182 45.455 26.09 9.99 34.07 2.85
5896 8031 2.094854 CCTGCAAGACCAATGAAGCTTC 60.095 50.000 19.89 19.89 34.07 3.86
5897 8032 1.891150 CCTGCAAGACCAATGAAGCTT 59.109 47.619 0.00 0.00 34.07 3.74
5898 8033 1.542492 CCTGCAAGACCAATGAAGCT 58.458 50.000 0.00 0.00 34.07 3.74
5899 8034 0.108945 GCCTGCAAGACCAATGAAGC 60.109 55.000 0.00 0.00 34.07 3.86
5900 8035 1.542492 AGCCTGCAAGACCAATGAAG 58.458 50.000 0.00 0.00 34.07 3.02
5901 8036 2.877097 TAGCCTGCAAGACCAATGAA 57.123 45.000 0.00 0.00 34.07 2.57
5902 8037 3.370840 AATAGCCTGCAAGACCAATGA 57.629 42.857 0.00 0.00 34.07 2.57
5903 8038 3.316308 GGTAATAGCCTGCAAGACCAATG 59.684 47.826 0.00 0.00 34.07 2.82
5904 8039 3.555966 GGTAATAGCCTGCAAGACCAAT 58.444 45.455 0.00 0.00 34.07 3.16
5905 8040 2.679639 CGGTAATAGCCTGCAAGACCAA 60.680 50.000 0.00 0.00 34.07 3.67
5906 8041 1.134521 CGGTAATAGCCTGCAAGACCA 60.135 52.381 0.00 0.00 34.07 4.02
5907 8042 1.583054 CGGTAATAGCCTGCAAGACC 58.417 55.000 0.00 0.00 34.07 3.85
5908 8043 1.138266 TCCGGTAATAGCCTGCAAGAC 59.862 52.381 0.00 0.00 34.07 3.01
5909 8044 1.412710 CTCCGGTAATAGCCTGCAAGA 59.587 52.381 0.00 0.00 34.07 3.02
5910 8045 1.541233 CCTCCGGTAATAGCCTGCAAG 60.541 57.143 0.00 0.00 0.00 4.01
5911 8046 0.468226 CCTCCGGTAATAGCCTGCAA 59.532 55.000 0.00 0.00 0.00 4.08
5921 8056 5.750352 AGTTTCTAATGAACCTCCGGTAA 57.250 39.130 0.00 0.00 33.12 2.85
5925 8060 5.914033 TCCATAGTTTCTAATGAACCTCCG 58.086 41.667 0.00 0.00 31.02 4.63
5964 8099 8.846943 TTATCTTTCTTCAGTGCTTGATACAA 57.153 30.769 0.00 0.00 35.27 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.