Multiple sequence alignment - TraesCS1B01G141700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G141700 chr1B 100.000 5324 0 0 1 5324 189327669 189322346 0.000000e+00 9832.0
1 TraesCS1B01G141700 chr1B 98.246 228 4 0 1383 1610 189132336 189132563 2.990000e-107 399.0
2 TraesCS1B01G141700 chr1D 94.686 3086 71 31 1625 4672 125071057 125068027 0.000000e+00 4704.0
3 TraesCS1B01G141700 chr1D 88.633 695 40 8 4668 5324 125067977 125067284 0.000000e+00 809.0
4 TraesCS1B01G141700 chr1D 88.321 685 27 15 470 1106 125071963 125071284 0.000000e+00 773.0
5 TraesCS1B01G141700 chr1D 82.379 227 29 8 1148 1367 125071275 125071053 2.530000e-43 187.0
6 TraesCS1B01G141700 chr1A 94.373 3110 73 34 1625 4672 138228490 138225421 0.000000e+00 4680.0
7 TraesCS1B01G141700 chr1A 88.116 690 24 24 467 1106 138229421 138228740 0.000000e+00 767.0
8 TraesCS1B01G141700 chr1A 88.255 298 27 5 4659 4950 138225379 138225084 3.050000e-92 350.0
9 TraesCS1B01G141700 chr1A 83.794 253 24 13 1148 1389 138228731 138228485 1.930000e-54 224.0
10 TraesCS1B01G141700 chr5A 98.929 467 5 0 1 467 366252319 366251853 0.000000e+00 835.0
11 TraesCS1B01G141700 chr5A 98.488 463 7 0 1 463 319239249 319239711 0.000000e+00 817.0
12 TraesCS1B01G141700 chr5A 94.883 469 18 4 1 467 689692898 689692434 0.000000e+00 728.0
13 TraesCS1B01G141700 chr5A 94.828 464 23 1 1 463 689705348 689704885 0.000000e+00 723.0
14 TraesCS1B01G141700 chr5A 93.750 464 26 2 1 463 689692250 689691789 0.000000e+00 693.0
15 TraesCS1B01G141700 chr5A 80.808 198 26 8 278 463 320938108 320938305 1.550000e-30 145.0
16 TraesCS1B01G141700 chr5A 90.769 65 6 0 4822 4886 680882226 680882162 2.640000e-13 87.9
17 TraesCS1B01G141700 chr7A 94.397 464 25 1 1 463 485608807 485609270 0.000000e+00 712.0
18 TraesCS1B01G141700 chr7A 94.181 464 25 2 1 463 705505725 705505263 0.000000e+00 706.0
19 TraesCS1B01G141700 chr7A 93.548 62 3 1 4822 4882 107155060 107155121 2.040000e-14 91.6
20 TraesCS1B01G141700 chrUn 94.181 464 26 1 1 463 63606757 63606294 0.000000e+00 706.0
21 TraesCS1B01G141700 chrUn 90.385 52 4 1 4823 4874 375943861 375943911 3.440000e-07 67.6
22 TraesCS1B01G141700 chr4A 98.324 179 3 0 1385 1563 614822172 614821994 1.110000e-81 315.0
23 TraesCS1B01G141700 chr4A 84.270 178 25 3 265 440 537185499 537185675 2.550000e-38 171.0
24 TraesCS1B01G141700 chr4A 89.000 100 3 2 183 282 618242012 618241921 3.370000e-22 117.0
25 TraesCS1B01G141700 chr4A 88.710 62 7 0 4822 4883 619286087 619286026 5.720000e-10 76.8
26 TraesCS1B01G141700 chr6A 90.756 238 11 3 1385 1611 604896931 604896694 1.860000e-79 307.0
27 TraesCS1B01G141700 chr2A 90.254 236 12 5 1386 1610 32975870 32976105 1.120000e-76 298.0
28 TraesCS1B01G141700 chr2A 89.899 198 15 2 2836 3031 400975395 400975589 3.180000e-62 250.0
29 TraesCS1B01G141700 chr2A 89.899 198 15 2 2836 3031 402915138 402915332 3.180000e-62 250.0
30 TraesCS1B01G141700 chr6B 90.367 218 20 1 1386 1602 653853653 653853870 8.730000e-73 285.0
31 TraesCS1B01G141700 chr5B 90.265 226 11 3 1397 1611 581716771 581716546 8.730000e-73 285.0
32 TraesCS1B01G141700 chr5B 82.432 296 35 7 1 280 50509674 50509968 5.330000e-60 243.0
33 TraesCS1B01G141700 chr5B 90.566 53 4 1 4822 4874 686688074 686688125 9.570000e-08 69.4
34 TraesCS1B01G141700 chr5B 90.385 52 4 1 4823 4874 686576623 686576673 3.440000e-07 67.6
35 TraesCS1B01G141700 chr3A 88.703 239 15 6 1383 1610 382019002 382019239 1.130000e-71 281.0
36 TraesCS1B01G141700 chr3A 89.450 218 13 4 1386 1603 684643642 684643435 3.160000e-67 267.0
37 TraesCS1B01G141700 chr3A 88.073 218 6 1 1386 1603 80542059 80542256 1.920000e-59 241.0
38 TraesCS1B01G141700 chr3A 89.091 165 18 0 2001 2165 505225668 505225504 6.990000e-49 206.0
39 TraesCS1B01G141700 chr2B 88.696 230 21 5 1386 1614 64335518 64335743 5.250000e-70 276.0
40 TraesCS1B01G141700 chr2B 89.381 226 11 8 1397 1611 461248031 461247808 6.790000e-69 272.0
41 TraesCS1B01G141700 chr4B 87.866 239 18 6 1382 1609 664791585 664791823 2.440000e-68 270.0
42 TraesCS1B01G141700 chr3B 79.946 369 57 15 2001 2361 497714055 497713696 6.840000e-64 255.0
43 TraesCS1B01G141700 chr3D 90.964 166 15 0 2001 2166 381994594 381994429 1.930000e-54 224.0
44 TraesCS1B01G141700 chr7D 86.096 187 22 4 1385 1568 113723355 113723540 1.170000e-46 198.0
45 TraesCS1B01G141700 chr6D 92.063 63 5 0 4821 4883 459716070 459716132 7.340000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G141700 chr1B 189322346 189327669 5323 True 9832.00 9832 100.00000 1 5324 1 chr1B.!!$R1 5323
1 TraesCS1B01G141700 chr1D 125067284 125071963 4679 True 1618.25 4704 88.50475 470 5324 4 chr1D.!!$R1 4854
2 TraesCS1B01G141700 chr1A 138225084 138229421 4337 True 1505.25 4680 88.63450 467 4950 4 chr1A.!!$R1 4483
3 TraesCS1B01G141700 chr5A 689691789 689692898 1109 True 710.50 728 94.31650 1 467 2 chr5A.!!$R4 466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 964 0.990282 ACCACATCCCATCCCAGGAG 60.990 60.0 0.0 0.0 36.67 3.69 F
1621 1699 0.037975 AAACACAGCGGTAGGGTACG 60.038 55.0 0.0 0.0 0.00 3.67 F
1623 1701 0.322456 ACACAGCGGTAGGGTACGTA 60.322 55.0 0.0 0.0 0.00 3.57 F
3496 3653 0.540830 AGGGTCTGCTTGTCGAGTCT 60.541 55.0 0.0 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 2692 0.171231 TCAGTCAGCAGAACGATCCG 59.829 55.000 0.0 0.0 0.0 4.18 R
3425 3580 1.061131 CGTCGTGCTAAATCTTGCTGG 59.939 52.381 0.0 0.0 0.0 4.85 R
3553 3710 2.045536 GCCTCCAGCAGGGTCTTG 60.046 66.667 0.0 0.0 43.7 3.02 R
5191 5433 0.181350 GCGAAGATGGGAGGAATGGT 59.819 55.000 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.942130 GTTGGGAATTTTCCTGGTCAG 57.058 47.619 9.13 0.00 46.72 3.51
71 72 2.823154 GCAGCCACTTTGTTGGGTATTA 59.177 45.455 0.00 0.00 45.88 0.98
85 86 7.382898 TGTTGGGTATTAGCAAATTTTCTTCC 58.617 34.615 0.00 0.00 0.00 3.46
104 105 3.031013 TCCGTCAATTCTGCAGGATCTA 58.969 45.455 15.13 0.00 0.00 1.98
107 108 4.272018 CCGTCAATTCTGCAGGATCTAAAG 59.728 45.833 15.13 2.33 0.00 1.85
108 109 4.872691 CGTCAATTCTGCAGGATCTAAAGT 59.127 41.667 15.13 0.00 0.00 2.66
216 217 2.163613 TCATGCTAGTGTACTGTGGACG 59.836 50.000 0.00 0.00 0.00 4.79
271 272 3.951563 AGCTAATAAGATGCCCAACCA 57.048 42.857 0.00 0.00 0.00 3.67
406 407 9.362539 GTATTGACTCTTTTGATTTGCATCAAT 57.637 29.630 3.66 6.34 46.68 2.57
407 408 8.842358 ATTGACTCTTTTGATTTGCATCAATT 57.158 26.923 3.66 0.00 46.68 2.32
408 409 8.665643 TTGACTCTTTTGATTTGCATCAATTT 57.334 26.923 3.66 0.00 46.68 1.82
462 465 2.656560 AAATTCGTCCTCCGTCTCTG 57.343 50.000 0.00 0.00 37.94 3.35
463 466 1.546961 AATTCGTCCTCCGTCTCTGT 58.453 50.000 0.00 0.00 37.94 3.41
464 467 2.414994 ATTCGTCCTCCGTCTCTGTA 57.585 50.000 0.00 0.00 37.94 2.74
465 468 1.446907 TTCGTCCTCCGTCTCTGTAC 58.553 55.000 0.00 0.00 37.94 2.90
508 512 2.452064 CCATATGTCCGTGGGGCCT 61.452 63.158 0.84 0.00 0.00 5.19
519 523 4.442454 GGGGCCTTAGGGGTGTGC 62.442 72.222 0.84 0.00 37.43 4.57
547 551 5.624344 ATTGTCAATTGAGCAAGAGACTG 57.376 39.130 20.42 0.00 32.61 3.51
548 552 3.405831 TGTCAATTGAGCAAGAGACTGG 58.594 45.455 8.80 0.00 32.61 4.00
549 553 3.181451 TGTCAATTGAGCAAGAGACTGGT 60.181 43.478 8.80 0.00 32.61 4.00
550 554 4.040339 TGTCAATTGAGCAAGAGACTGGTA 59.960 41.667 8.80 0.00 32.61 3.25
551 555 4.997395 GTCAATTGAGCAAGAGACTGGTAA 59.003 41.667 8.80 0.00 0.00 2.85
552 556 5.645497 GTCAATTGAGCAAGAGACTGGTAAT 59.355 40.000 8.80 0.00 0.00 1.89
553 557 6.818644 GTCAATTGAGCAAGAGACTGGTAATA 59.181 38.462 8.80 0.00 0.00 0.98
554 558 7.497249 GTCAATTGAGCAAGAGACTGGTAATAT 59.503 37.037 8.80 0.00 0.00 1.28
555 559 8.049117 TCAATTGAGCAAGAGACTGGTAATATT 58.951 33.333 3.38 0.00 0.00 1.28
556 560 9.330063 CAATTGAGCAAGAGACTGGTAATATTA 57.670 33.333 0.00 0.00 0.00 0.98
557 561 8.894768 ATTGAGCAAGAGACTGGTAATATTAC 57.105 34.615 15.98 15.98 0.00 1.89
595 599 3.423154 GCGCCGACCACCTTCTTG 61.423 66.667 0.00 0.00 0.00 3.02
644 648 3.055385 CCTCCATGTTCGTTTCCCTCTTA 60.055 47.826 0.00 0.00 0.00 2.10
649 653 5.648092 CCATGTTCGTTTCCCTCTTATTTCT 59.352 40.000 0.00 0.00 0.00 2.52
726 751 1.009335 GCAACGAACGAACCAACCC 60.009 57.895 0.14 0.00 0.00 4.11
733 758 3.053896 CGAACCAACCCGGGAAGC 61.054 66.667 32.02 8.96 40.22 3.86
734 759 2.675423 GAACCAACCCGGGAAGCC 60.675 66.667 32.02 7.07 40.22 4.35
735 760 3.182996 AACCAACCCGGGAAGCCT 61.183 61.111 32.02 0.00 40.22 4.58
739 764 3.009714 AACCCGGGAAGCCTCCTC 61.010 66.667 32.02 0.00 42.05 3.71
740 765 3.564347 AACCCGGGAAGCCTCCTCT 62.564 63.158 32.02 0.00 42.05 3.69
741 766 3.157949 CCCGGGAAGCCTCCTCTC 61.158 72.222 18.48 0.00 42.05 3.20
885 948 1.826340 CGTCTCCACACCATCCACCA 61.826 60.000 0.00 0.00 0.00 4.17
901 964 0.990282 ACCACATCCCATCCCAGGAG 60.990 60.000 0.00 0.00 36.67 3.69
934 1002 2.932614 ACAAGAGCTCGATTCAAATCCG 59.067 45.455 8.37 0.00 31.68 4.18
943 1011 2.213499 GATTCAAATCCGATCCTGCGT 58.787 47.619 0.00 0.00 0.00 5.24
970 1038 2.049433 CGCTTCTTCCGTCCGTGT 60.049 61.111 0.00 0.00 0.00 4.49
986 1054 2.029964 GTGTTCGTTCCGAGGCCA 59.970 61.111 5.01 0.00 37.14 5.36
987 1055 2.027625 GTGTTCGTTCCGAGGCCAG 61.028 63.158 5.01 0.00 37.14 4.85
1106 1174 3.311596 GCAAGGTAATACCGCTAACCAAG 59.688 47.826 3.47 0.00 44.90 3.61
1107 1175 3.189618 AGGTAATACCGCTAACCAAGC 57.810 47.619 3.47 0.00 44.90 4.01
1114 1182 3.195698 GCTAACCAAGCCGAGCCG 61.196 66.667 0.00 0.00 46.25 5.52
1115 1183 2.264794 CTAACCAAGCCGAGCCGT 59.735 61.111 0.00 0.00 0.00 5.68
1116 1184 1.514087 CTAACCAAGCCGAGCCGTA 59.486 57.895 0.00 0.00 0.00 4.02
1117 1185 0.527817 CTAACCAAGCCGAGCCGTAG 60.528 60.000 0.00 0.00 0.00 3.51
1118 1186 0.966875 TAACCAAGCCGAGCCGTAGA 60.967 55.000 0.00 0.00 0.00 2.59
1119 1187 2.105128 CCAAGCCGAGCCGTAGAG 59.895 66.667 0.00 0.00 0.00 2.43
1120 1188 2.711922 CCAAGCCGAGCCGTAGAGT 61.712 63.158 0.00 0.00 0.00 3.24
1121 1189 1.215647 CAAGCCGAGCCGTAGAGTT 59.784 57.895 0.00 0.00 0.00 3.01
1122 1190 1.078759 CAAGCCGAGCCGTAGAGTTG 61.079 60.000 0.00 0.00 0.00 3.16
1123 1191 1.248785 AAGCCGAGCCGTAGAGTTGA 61.249 55.000 0.00 0.00 0.00 3.18
1124 1192 1.226717 GCCGAGCCGTAGAGTTGAG 60.227 63.158 0.00 0.00 0.00 3.02
1125 1193 1.226717 CCGAGCCGTAGAGTTGAGC 60.227 63.158 0.00 0.00 0.00 4.26
1126 1194 1.226717 CGAGCCGTAGAGTTGAGCC 60.227 63.158 0.00 0.00 0.00 4.70
1127 1195 1.658686 CGAGCCGTAGAGTTGAGCCT 61.659 60.000 0.00 0.00 0.00 4.58
1128 1196 0.179124 GAGCCGTAGAGTTGAGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
1129 1197 1.153549 GCCGTAGAGTTGAGCCTGG 60.154 63.158 0.00 0.00 0.00 4.45
1130 1198 1.153549 CCGTAGAGTTGAGCCTGGC 60.154 63.158 11.65 11.65 0.00 4.85
1131 1199 1.517257 CGTAGAGTTGAGCCTGGCG 60.517 63.158 13.96 0.00 0.00 5.69
1132 1200 1.153549 GTAGAGTTGAGCCTGGCGG 60.154 63.158 13.96 0.00 0.00 6.13
1133 1201 1.609501 TAGAGTTGAGCCTGGCGGT 60.610 57.895 13.96 0.00 0.00 5.68
1134 1202 1.192146 TAGAGTTGAGCCTGGCGGTT 61.192 55.000 13.96 0.00 0.00 4.44
1135 1203 2.032681 AGTTGAGCCTGGCGGTTC 59.967 61.111 13.96 6.23 40.62 3.62
1136 1204 2.032681 GTTGAGCCTGGCGGTTCT 59.967 61.111 13.96 0.00 40.82 3.01
1137 1205 2.035442 GTTGAGCCTGGCGGTTCTC 61.035 63.158 13.96 5.43 40.82 2.87
1138 1206 3.254024 TTGAGCCTGGCGGTTCTCC 62.254 63.158 13.96 0.00 40.82 3.71
1150 1218 2.545537 GGTTCTCCGTTCCTCTTGTT 57.454 50.000 0.00 0.00 0.00 2.83
1151 1219 2.414806 GGTTCTCCGTTCCTCTTGTTC 58.585 52.381 0.00 0.00 0.00 3.18
1152 1220 2.037381 GGTTCTCCGTTCCTCTTGTTCT 59.963 50.000 0.00 0.00 0.00 3.01
1161 1229 4.056050 GTTCCTCTTGTTCTTGCTTCGTA 58.944 43.478 0.00 0.00 0.00 3.43
1165 1233 4.690748 CCTCTTGTTCTTGCTTCGTAATCA 59.309 41.667 0.00 0.00 0.00 2.57
1171 1239 3.674997 TCTTGCTTCGTAATCAAAGCCT 58.325 40.909 4.79 0.00 45.77 4.58
1173 1242 5.242434 TCTTGCTTCGTAATCAAAGCCTTA 58.758 37.500 4.79 0.00 45.77 2.69
1189 1258 1.346722 CCTTATTACGGCGAATCCCCT 59.653 52.381 16.62 0.00 0.00 4.79
1190 1259 2.612221 CCTTATTACGGCGAATCCCCTC 60.612 54.545 16.62 0.00 0.00 4.30
1192 1261 2.095978 ATTACGGCGAATCCCCTCCG 62.096 60.000 16.62 0.00 46.61 4.63
1210 1280 0.676782 CGGGCCGGAAATGAAGTTCT 60.677 55.000 20.56 0.00 0.00 3.01
1215 1285 3.541632 GCCGGAAATGAAGTTCTATGGA 58.458 45.455 5.05 0.00 0.00 3.41
1216 1286 3.561725 GCCGGAAATGAAGTTCTATGGAG 59.438 47.826 5.05 0.00 0.00 3.86
1235 1305 3.389221 GAGAATCCAGCTCCGATTTCTC 58.611 50.000 6.94 10.03 30.08 2.87
1313 1391 1.491670 CGAGATCATGCGATTTCGGT 58.508 50.000 7.32 0.00 46.89 4.69
1368 1446 3.131240 CAACTTACTATTGCGGTTGCC 57.869 47.619 0.00 0.00 41.78 4.52
1380 1458 1.680860 GCGGTTGCCACTATTTAGGGT 60.681 52.381 0.00 0.00 33.98 4.34
1382 1460 3.463944 CGGTTGCCACTATTTAGGGTAG 58.536 50.000 0.00 0.00 0.00 3.18
1385 1463 1.772453 TGCCACTATTTAGGGTAGGGC 59.228 52.381 0.00 0.00 36.69 5.19
1389 1467 3.181454 CCACTATTTAGGGTAGGGCTGTG 60.181 52.174 0.00 0.00 0.00 3.66
1390 1468 3.454812 CACTATTTAGGGTAGGGCTGTGT 59.545 47.826 0.00 0.00 0.00 3.72
1391 1469 4.080526 CACTATTTAGGGTAGGGCTGTGTT 60.081 45.833 0.00 0.00 0.00 3.32
1392 1470 4.538891 ACTATTTAGGGTAGGGCTGTGTTT 59.461 41.667 0.00 0.00 0.00 2.83
1393 1471 3.887916 TTTAGGGTAGGGCTGTGTTTT 57.112 42.857 0.00 0.00 0.00 2.43
1394 1472 2.871096 TAGGGTAGGGCTGTGTTTTG 57.129 50.000 0.00 0.00 0.00 2.44
1395 1473 1.145571 AGGGTAGGGCTGTGTTTTGA 58.854 50.000 0.00 0.00 0.00 2.69
1396 1474 1.710809 AGGGTAGGGCTGTGTTTTGAT 59.289 47.619 0.00 0.00 0.00 2.57
1397 1475 2.110011 AGGGTAGGGCTGTGTTTTGATT 59.890 45.455 0.00 0.00 0.00 2.57
1398 1476 2.897326 GGGTAGGGCTGTGTTTTGATTT 59.103 45.455 0.00 0.00 0.00 2.17
1399 1477 3.323691 GGGTAGGGCTGTGTTTTGATTTT 59.676 43.478 0.00 0.00 0.00 1.82
1400 1478 4.556233 GGTAGGGCTGTGTTTTGATTTTC 58.444 43.478 0.00 0.00 0.00 2.29
1401 1479 3.369546 AGGGCTGTGTTTTGATTTTCG 57.630 42.857 0.00 0.00 0.00 3.46
1402 1480 2.035832 AGGGCTGTGTTTTGATTTTCGG 59.964 45.455 0.00 0.00 0.00 4.30
1403 1481 2.223947 GGGCTGTGTTTTGATTTTCGGT 60.224 45.455 0.00 0.00 0.00 4.69
1404 1482 3.453424 GGCTGTGTTTTGATTTTCGGTT 58.547 40.909 0.00 0.00 0.00 4.44
1405 1483 3.868661 GGCTGTGTTTTGATTTTCGGTTT 59.131 39.130 0.00 0.00 0.00 3.27
1406 1484 4.260172 GGCTGTGTTTTGATTTTCGGTTTG 60.260 41.667 0.00 0.00 0.00 2.93
1407 1485 4.564769 GCTGTGTTTTGATTTTCGGTTTGA 59.435 37.500 0.00 0.00 0.00 2.69
1408 1486 5.276348 GCTGTGTTTTGATTTTCGGTTTGAG 60.276 40.000 0.00 0.00 0.00 3.02
1409 1487 4.564769 TGTGTTTTGATTTTCGGTTTGAGC 59.435 37.500 0.00 0.00 0.00 4.26
1410 1488 4.803613 GTGTTTTGATTTTCGGTTTGAGCT 59.196 37.500 0.00 0.00 0.00 4.09
1411 1489 5.290885 GTGTTTTGATTTTCGGTTTGAGCTT 59.709 36.000 0.00 0.00 0.00 3.74
1412 1490 5.872070 TGTTTTGATTTTCGGTTTGAGCTTT 59.128 32.000 0.00 0.00 0.00 3.51
1413 1491 6.370166 TGTTTTGATTTTCGGTTTGAGCTTTT 59.630 30.769 0.00 0.00 0.00 2.27
1414 1492 6.976636 TTTGATTTTCGGTTTGAGCTTTTT 57.023 29.167 0.00 0.00 0.00 1.94
1444 1522 1.934463 CCGAGATGGCCGAAATTCG 59.066 57.895 8.62 8.62 40.07 3.34
1461 1539 8.986039 CGAAATTCGGTCATTTTCAAAAATTT 57.014 26.923 7.61 0.00 34.90 1.82
1462 1540 9.091255 CGAAATTCGGTCATTTTCAAAAATTTC 57.909 29.630 7.61 0.00 37.99 2.17
1463 1541 8.986039 AAATTCGGTCATTTTCAAAAATTTCG 57.014 26.923 0.00 3.97 36.52 3.46
1464 1542 6.517914 TTCGGTCATTTTCAAAAATTTCGG 57.482 33.333 0.00 1.19 36.52 4.30
1465 1543 4.446051 TCGGTCATTTTCAAAAATTTCGGC 59.554 37.500 0.00 0.00 36.52 5.54
1466 1544 4.447389 CGGTCATTTTCAAAAATTTCGGCT 59.553 37.500 0.00 0.00 36.52 5.52
1467 1545 5.631512 CGGTCATTTTCAAAAATTTCGGCTA 59.368 36.000 0.00 0.00 36.52 3.93
1468 1546 6.144724 CGGTCATTTTCAAAAATTTCGGCTAA 59.855 34.615 0.00 0.00 36.52 3.09
1469 1547 7.306866 CGGTCATTTTCAAAAATTTCGGCTAAA 60.307 33.333 0.00 0.00 36.52 1.85
1470 1548 8.338986 GGTCATTTTCAAAAATTTCGGCTAAAA 58.661 29.630 0.00 0.00 36.52 1.52
1471 1549 9.877137 GTCATTTTCAAAAATTTCGGCTAAAAT 57.123 25.926 0.00 0.00 36.52 1.82
1479 1557 9.101971 CAAAAATTTCGGCTAAAATTTAACTGC 57.898 29.630 16.99 0.00 44.17 4.40
1480 1558 6.626199 AATTTCGGCTAAAATTTAACTGCG 57.374 33.333 0.00 0.00 35.78 5.18
1481 1559 5.359716 TTTCGGCTAAAATTTAACTGCGA 57.640 34.783 0.00 0.00 0.00 5.10
1482 1560 5.554822 TTCGGCTAAAATTTAACTGCGAT 57.445 34.783 0.00 0.00 0.00 4.58
1483 1561 5.554822 TCGGCTAAAATTTAACTGCGATT 57.445 34.783 0.00 0.00 0.00 3.34
1484 1562 5.945155 TCGGCTAAAATTTAACTGCGATTT 58.055 33.333 0.00 0.00 0.00 2.17
1485 1563 5.797934 TCGGCTAAAATTTAACTGCGATTTG 59.202 36.000 0.00 0.00 0.00 2.32
1486 1564 5.797934 CGGCTAAAATTTAACTGCGATTTGA 59.202 36.000 0.00 0.00 0.00 2.69
1487 1565 6.237201 CGGCTAAAATTTAACTGCGATTTGAC 60.237 38.462 0.00 0.00 0.00 3.18
1488 1566 6.806739 GGCTAAAATTTAACTGCGATTTGACT 59.193 34.615 0.00 0.00 0.00 3.41
1489 1567 7.328493 GGCTAAAATTTAACTGCGATTTGACTT 59.672 33.333 0.00 0.00 0.00 3.01
1490 1568 9.337091 GCTAAAATTTAACTGCGATTTGACTTA 57.663 29.630 0.00 0.00 0.00 2.24
1497 1575 9.737427 TTTAACTGCGATTTGACTTAAATTTGA 57.263 25.926 0.00 0.00 39.06 2.69
1498 1576 7.623268 AACTGCGATTTGACTTAAATTTGAC 57.377 32.000 0.00 0.00 39.06 3.18
1499 1577 6.149633 ACTGCGATTTGACTTAAATTTGACC 58.850 36.000 0.00 0.00 39.06 4.02
1500 1578 6.078202 TGCGATTTGACTTAAATTTGACCA 57.922 33.333 0.00 0.00 39.06 4.02
1501 1579 6.507900 TGCGATTTGACTTAAATTTGACCAA 58.492 32.000 0.00 0.00 39.06 3.67
1502 1580 6.980978 TGCGATTTGACTTAAATTTGACCAAA 59.019 30.769 0.00 6.63 39.06 3.28
1503 1581 7.492669 TGCGATTTGACTTAAATTTGACCAAAA 59.507 29.630 0.00 0.00 39.06 2.44
1504 1582 8.495148 GCGATTTGACTTAAATTTGACCAAAAT 58.505 29.630 0.00 2.34 39.06 1.82
1517 1595 7.969536 TTTGACCAAAATTTGTCAAACTTGA 57.030 28.000 22.97 9.34 36.60 3.02
1518 1596 8.558973 TTTGACCAAAATTTGTCAAACTTGAT 57.441 26.923 22.97 6.18 39.73 2.57
1519 1597 7.769272 TGACCAAAATTTGTCAAACTTGATC 57.231 32.000 17.63 13.17 39.73 2.92
1520 1598 7.326454 TGACCAAAATTTGTCAAACTTGATCA 58.674 30.769 17.63 14.95 39.73 2.92
1521 1599 7.821359 TGACCAAAATTTGTCAAACTTGATCAA 59.179 29.630 17.63 8.12 39.73 2.57
1522 1600 8.735692 ACCAAAATTTGTCAAACTTGATCAAT 57.264 26.923 8.96 0.00 39.73 2.57
1523 1601 9.176460 ACCAAAATTTGTCAAACTTGATCAATT 57.824 25.926 8.96 0.00 39.73 2.32
1526 1604 9.919348 AAAATTTGTCAAACTTGATCAATTTCG 57.081 25.926 8.96 0.00 38.88 3.46
1527 1605 7.642071 ATTTGTCAAACTTGATCAATTTCGG 57.358 32.000 8.96 6.26 39.73 4.30
1528 1606 4.545610 TGTCAAACTTGATCAATTTCGGC 58.454 39.130 8.96 1.06 39.73 5.54
1529 1607 3.920412 GTCAAACTTGATCAATTTCGGCC 59.080 43.478 8.96 0.00 39.73 6.13
1530 1608 3.826157 TCAAACTTGATCAATTTCGGCCT 59.174 39.130 8.96 0.00 31.01 5.19
1531 1609 5.007034 TCAAACTTGATCAATTTCGGCCTA 58.993 37.500 8.96 0.00 31.01 3.93
1532 1610 5.475220 TCAAACTTGATCAATTTCGGCCTAA 59.525 36.000 8.96 0.00 31.01 2.69
1533 1611 5.975693 AACTTGATCAATTTCGGCCTAAA 57.024 34.783 8.96 4.72 0.00 1.85
1534 1612 5.567138 ACTTGATCAATTTCGGCCTAAAG 57.433 39.130 8.96 0.00 0.00 1.85
1535 1613 5.253330 ACTTGATCAATTTCGGCCTAAAGA 58.747 37.500 8.96 1.70 0.00 2.52
1536 1614 5.888161 ACTTGATCAATTTCGGCCTAAAGAT 59.112 36.000 8.96 6.42 0.00 2.40
1537 1615 7.054124 ACTTGATCAATTTCGGCCTAAAGATA 58.946 34.615 8.96 0.00 0.00 1.98
1538 1616 6.861065 TGATCAATTTCGGCCTAAAGATAC 57.139 37.500 8.56 2.89 0.00 2.24
1539 1617 6.591935 TGATCAATTTCGGCCTAAAGATACT 58.408 36.000 8.56 0.00 0.00 2.12
1540 1618 7.054124 TGATCAATTTCGGCCTAAAGATACTT 58.946 34.615 8.56 0.00 0.00 2.24
1541 1619 7.556275 TGATCAATTTCGGCCTAAAGATACTTT 59.444 33.333 8.56 0.00 0.00 2.66
1542 1620 7.316544 TCAATTTCGGCCTAAAGATACTTTC 57.683 36.000 8.56 0.00 0.00 2.62
1543 1621 6.317893 TCAATTTCGGCCTAAAGATACTTTCC 59.682 38.462 8.56 0.00 0.00 3.13
1544 1622 3.447918 TCGGCCTAAAGATACTTTCCG 57.552 47.619 0.00 13.06 37.21 4.30
1545 1623 1.865340 CGGCCTAAAGATACTTTCCGC 59.135 52.381 0.00 7.83 0.00 5.54
1546 1624 2.219458 GGCCTAAAGATACTTTCCGCC 58.781 52.381 14.24 14.24 0.00 6.13
1547 1625 2.219458 GCCTAAAGATACTTTCCGCCC 58.781 52.381 0.00 0.00 0.00 6.13
1548 1626 2.847441 CCTAAAGATACTTTCCGCCCC 58.153 52.381 0.00 0.00 0.00 5.80
1549 1627 2.171870 CCTAAAGATACTTTCCGCCCCA 59.828 50.000 0.00 0.00 0.00 4.96
1550 1628 2.420058 AAAGATACTTTCCGCCCCAG 57.580 50.000 0.00 0.00 0.00 4.45
1551 1629 0.546598 AAGATACTTTCCGCCCCAGG 59.453 55.000 0.00 0.00 0.00 4.45
1552 1630 1.526225 GATACTTTCCGCCCCAGGC 60.526 63.158 0.00 0.00 46.75 4.85
1570 1648 1.351707 CCGACATGGCCGAAATTCG 59.648 57.895 8.62 8.62 40.07 3.34
1580 1658 3.526825 CGAAATTCGGCCGAAATCC 57.473 52.632 41.31 29.08 37.69 3.01
1582 1660 0.730840 GAAATTCGGCCGAAATCCGT 59.269 50.000 41.31 24.03 46.49 4.69
1583 1661 1.131693 GAAATTCGGCCGAAATCCGTT 59.868 47.619 41.31 28.12 46.49 4.44
1584 1662 1.170442 AATTCGGCCGAAATCCGTTT 58.830 45.000 41.31 27.41 46.49 3.60
1585 1663 1.170442 ATTCGGCCGAAATCCGTTTT 58.830 45.000 41.31 21.74 46.49 2.43
1586 1664 0.953003 TTCGGCCGAAATCCGTTTTT 59.047 45.000 37.13 0.00 46.49 1.94
1606 1684 3.438297 TTTCGGCCGAAAATCAAAACA 57.562 38.095 42.69 22.90 40.63 2.83
1607 1685 2.409152 TCGGCCGAAAATCAAAACAC 57.591 45.000 28.99 0.00 0.00 3.32
1608 1686 1.676529 TCGGCCGAAAATCAAAACACA 59.323 42.857 28.99 0.00 0.00 3.72
1609 1687 2.050691 CGGCCGAAAATCAAAACACAG 58.949 47.619 24.07 0.00 0.00 3.66
1610 1688 1.792367 GGCCGAAAATCAAAACACAGC 59.208 47.619 0.00 0.00 0.00 4.40
1611 1689 1.451651 GCCGAAAATCAAAACACAGCG 59.548 47.619 0.00 0.00 0.00 5.18
1612 1690 2.050691 CCGAAAATCAAAACACAGCGG 58.949 47.619 0.00 0.00 0.00 5.52
1613 1691 2.542824 CCGAAAATCAAAACACAGCGGT 60.543 45.455 0.00 0.00 0.00 5.68
1614 1692 3.304123 CCGAAAATCAAAACACAGCGGTA 60.304 43.478 0.00 0.00 0.00 4.02
1615 1693 3.906008 CGAAAATCAAAACACAGCGGTAG 59.094 43.478 0.00 0.00 0.00 3.18
1616 1694 3.915437 AAATCAAAACACAGCGGTAGG 57.085 42.857 0.00 0.00 0.00 3.18
1617 1695 1.821216 ATCAAAACACAGCGGTAGGG 58.179 50.000 0.00 0.00 0.00 3.53
1618 1696 0.470766 TCAAAACACAGCGGTAGGGT 59.529 50.000 0.00 0.00 0.00 4.34
1619 1697 1.693062 TCAAAACACAGCGGTAGGGTA 59.307 47.619 0.00 0.00 0.00 3.69
1620 1698 1.802365 CAAAACACAGCGGTAGGGTAC 59.198 52.381 0.00 0.00 0.00 3.34
1621 1699 0.037975 AAACACAGCGGTAGGGTACG 60.038 55.000 0.00 0.00 0.00 3.67
1622 1700 1.181098 AACACAGCGGTAGGGTACGT 61.181 55.000 0.00 0.00 0.00 3.57
1623 1701 0.322456 ACACAGCGGTAGGGTACGTA 60.322 55.000 0.00 0.00 0.00 3.57
1732 1810 0.886490 AGGGACTGCGCTCAAAGTTG 60.886 55.000 9.73 0.00 37.18 3.16
1744 1822 1.101454 CAAAGTTGTCGTTCGCGTTG 58.899 50.000 5.77 0.00 42.11 4.10
1897 1975 4.733725 TACCTCCGGGGCCTGCTT 62.734 66.667 6.91 0.00 39.10 3.91
1966 2044 1.445582 CCTCCGCAGTTACACCGTC 60.446 63.158 0.00 0.00 0.00 4.79
2183 2275 2.685897 TCTCTCTTTTCTCTCTAGCGCC 59.314 50.000 2.29 0.00 0.00 6.53
2232 2324 1.532090 CGAGACTGGCGTACATGTCTC 60.532 57.143 0.00 17.32 43.38 3.36
2352 2444 2.444895 GGGCTCGGAGATCTGGGT 60.445 66.667 9.69 0.00 33.89 4.51
2482 2586 0.552848 ATCTTGTGCAGGGTATGGGG 59.447 55.000 0.00 0.00 0.00 4.96
2579 2683 3.575256 TGTTCTGAAAGCATGCAAGGATT 59.425 39.130 21.98 6.44 0.00 3.01
2588 2692 2.931969 GCATGCAAGGATTAAAACCAGC 59.068 45.455 14.21 8.08 0.00 4.85
2687 2796 3.571571 CACCAACAATGAGACATTGCTG 58.428 45.455 19.83 17.87 32.55 4.41
2806 2947 0.826715 ATTAGCTCGCCTCTGCAGAA 59.173 50.000 18.85 1.24 37.32 3.02
2833 2974 1.585668 GACATGTCGTCGATGCTGAAG 59.414 52.381 10.69 0.00 34.19 3.02
3036 3178 3.006940 GTGCTTCATTCATTCCCGTACA 58.993 45.455 0.00 0.00 0.00 2.90
3422 3577 1.952990 TCGCTCATCTCATCTCAGGAC 59.047 52.381 0.00 0.00 0.00 3.85
3425 3580 3.550639 CGCTCATCTCATCTCAGGACTTC 60.551 52.174 0.00 0.00 0.00 3.01
3496 3653 0.540830 AGGGTCTGCTTGTCGAGTCT 60.541 55.000 0.00 0.00 0.00 3.24
3695 3852 1.836391 TGGTCCGGCCATGATAAGG 59.164 57.895 12.86 0.00 43.61 2.69
3715 3876 6.705863 AAGGCTATCACATTTCTTGATTCC 57.294 37.500 0.00 0.00 35.31 3.01
3741 3902 2.869897 CAGAGACGCTAAACAGAGGTC 58.130 52.381 0.00 0.00 0.00 3.85
3742 3903 2.490115 CAGAGACGCTAAACAGAGGTCT 59.510 50.000 0.00 0.00 40.43 3.85
4407 4574 0.447801 CGTATGCCAACCAGCTCAAC 59.552 55.000 0.00 0.00 0.00 3.18
4408 4575 1.826385 GTATGCCAACCAGCTCAACT 58.174 50.000 0.00 0.00 0.00 3.16
4409 4576 1.740025 GTATGCCAACCAGCTCAACTC 59.260 52.381 0.00 0.00 0.00 3.01
4410 4577 0.111061 ATGCCAACCAGCTCAACTCA 59.889 50.000 0.00 0.00 0.00 3.41
4411 4578 0.106769 TGCCAACCAGCTCAACTCAA 60.107 50.000 0.00 0.00 0.00 3.02
4412 4579 1.032014 GCCAACCAGCTCAACTCAAA 58.968 50.000 0.00 0.00 0.00 2.69
4444 4611 3.824443 ACGCAACCTAAAACATAGGCTTT 59.176 39.130 0.00 0.00 38.25 3.51
4445 4612 4.082949 ACGCAACCTAAAACATAGGCTTTC 60.083 41.667 0.00 0.00 38.25 2.62
4449 4616 6.586463 GCAACCTAAAACATAGGCTTTCTTTC 59.414 38.462 0.00 0.00 38.25 2.62
4488 4655 2.599082 GCGTATGTGTACTCTTGTGCTC 59.401 50.000 0.00 0.00 0.00 4.26
4555 4727 1.521681 GGCACGCACCTGTCTATCC 60.522 63.158 0.00 0.00 0.00 2.59
4582 4757 4.707840 TGCGTCGTCGTCGTCGTC 62.708 66.667 19.72 13.60 46.29 4.20
4584 4759 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
4585 4760 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
4586 4761 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
4707 4936 5.536916 TCGGGTGAACAGTAAAATCCAAAAT 59.463 36.000 0.00 0.00 0.00 1.82
4708 4937 5.861787 CGGGTGAACAGTAAAATCCAAAATC 59.138 40.000 0.00 0.00 0.00 2.17
4805 5034 7.605410 AATTCCATGAAAGAATGACATTTGC 57.395 32.000 1.39 0.00 34.23 3.68
4812 5041 5.183713 TGAAAGAATGACATTTGCGGAAGAT 59.816 36.000 1.39 0.00 0.00 2.40
4813 5042 6.374053 TGAAAGAATGACATTTGCGGAAGATA 59.626 34.615 1.39 0.00 0.00 1.98
4815 5044 8.450578 AAAGAATGACATTTGCGGAAGATATA 57.549 30.769 1.39 0.00 0.00 0.86
4991 5226 2.483877 GACGTTCATTGAAGTCATGGCA 59.516 45.455 17.04 0.00 34.09 4.92
4992 5227 2.884012 ACGTTCATTGAAGTCATGGCAA 59.116 40.909 0.00 0.00 0.00 4.52
5068 5303 9.520204 AAACATTTGTCAGTCATCAGTAAAAAG 57.480 29.630 0.00 0.00 0.00 2.27
5104 5346 1.949525 AGTTTGCTGTTCATCGCAAGT 59.050 42.857 0.00 0.00 45.64 3.16
5136 5378 1.322936 CGCGAGCAGAAGATGACTTTC 59.677 52.381 0.00 0.00 36.39 2.62
5177 5419 0.035317 ATCTGAGCAAACACTGGCGA 59.965 50.000 0.00 0.00 34.54 5.54
5191 5433 2.102357 GCGAGCGTCCTCATCGAA 59.898 61.111 0.00 0.00 38.72 3.71
5193 5435 1.586564 CGAGCGTCCTCATCGAACC 60.587 63.158 0.00 0.00 38.72 3.62
5216 5467 3.008517 TCCCATCTTCGCAGGGCA 61.009 61.111 0.00 0.00 42.52 5.36
5250 5501 0.035739 TTTAGGTCCAACCAGACGCC 59.964 55.000 0.00 0.00 41.95 5.68
5252 5503 3.948719 GGTCCAACCAGACGCCCA 61.949 66.667 0.00 0.00 38.42 5.36
5308 5575 3.364664 GCACGAAACTTAAAGCACCCTAC 60.365 47.826 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.262603 GGTTCGTACACCGGGGAC 59.737 66.667 12.96 2.24 37.11 4.46
71 72 5.922544 CAGAATTGACGGAAGAAAATTTGCT 59.077 36.000 0.00 0.00 32.65 3.91
85 86 4.872691 ACTTTAGATCCTGCAGAATTGACG 59.127 41.667 17.39 0.00 0.00 4.35
132 133 8.402472 CAAGGTCGCTACATAAATTTTTATCCA 58.598 33.333 0.00 0.00 31.28 3.41
351 352 5.078256 ACAAACGGAAACCCCAATACAATA 58.922 37.500 0.00 0.00 34.14 1.90
412 415 5.717654 AGGTGTGGTGAAGTTTTAAGGAAAA 59.282 36.000 0.00 0.00 32.00 2.29
457 460 5.306678 GGGCTAGTAGTAGTAGGTACAGAGA 59.693 48.000 12.92 0.00 33.55 3.10
462 465 3.071747 ACCGGGCTAGTAGTAGTAGGTAC 59.928 52.174 6.32 0.00 31.83 3.34
463 466 3.318313 ACCGGGCTAGTAGTAGTAGGTA 58.682 50.000 6.32 0.00 31.83 3.08
464 467 2.131023 ACCGGGCTAGTAGTAGTAGGT 58.869 52.381 6.32 9.83 0.00 3.08
465 468 2.947127 ACCGGGCTAGTAGTAGTAGG 57.053 55.000 6.32 9.28 0.00 3.18
508 512 2.224572 ACAATTGTACGCACACCCCTAA 60.225 45.455 9.97 0.00 33.30 2.69
519 523 5.688823 TCTTGCTCAATTGACAATTGTACG 58.311 37.500 30.54 22.68 46.46 3.67
549 553 9.515226 GGCACTTGGAATGGAATAGTAATATTA 57.485 33.333 0.00 0.00 0.00 0.98
550 554 7.451566 GGGCACTTGGAATGGAATAGTAATATT 59.548 37.037 0.00 0.00 0.00 1.28
551 555 6.948309 GGGCACTTGGAATGGAATAGTAATAT 59.052 38.462 0.00 0.00 0.00 1.28
552 556 6.303839 GGGCACTTGGAATGGAATAGTAATA 58.696 40.000 0.00 0.00 0.00 0.98
553 557 5.140454 GGGCACTTGGAATGGAATAGTAAT 58.860 41.667 0.00 0.00 0.00 1.89
554 558 4.532834 GGGCACTTGGAATGGAATAGTAA 58.467 43.478 0.00 0.00 0.00 2.24
555 559 3.117663 GGGGCACTTGGAATGGAATAGTA 60.118 47.826 0.00 0.00 0.00 1.82
556 560 2.358195 GGGGCACTTGGAATGGAATAGT 60.358 50.000 0.00 0.00 0.00 2.12
557 561 2.310538 GGGGCACTTGGAATGGAATAG 58.689 52.381 0.00 0.00 0.00 1.73
665 669 8.080417 GGGAAACAAACTCTTCTTTATTGTACC 58.920 37.037 0.00 0.00 33.39 3.34
726 751 2.042435 AGGAGAGGAGGCTTCCCG 60.042 66.667 11.97 0.00 45.24 5.14
733 758 1.703411 GATGGTGAGAGGAGAGGAGG 58.297 60.000 0.00 0.00 0.00 4.30
734 759 1.703411 GGATGGTGAGAGGAGAGGAG 58.297 60.000 0.00 0.00 0.00 3.69
735 760 0.106469 CGGATGGTGAGAGGAGAGGA 60.106 60.000 0.00 0.00 0.00 3.71
739 764 2.343163 GACGCGGATGGTGAGAGGAG 62.343 65.000 12.47 0.00 0.00 3.69
740 765 2.362503 ACGCGGATGGTGAGAGGA 60.363 61.111 12.47 0.00 0.00 3.71
741 766 2.105128 GACGCGGATGGTGAGAGG 59.895 66.667 12.47 0.00 0.00 3.69
885 948 2.219216 AATCTCCTGGGATGGGATGT 57.781 50.000 0.00 0.00 31.89 3.06
943 1011 1.831343 GGAAGAAGCGCGATACGTAA 58.169 50.000 12.10 0.00 46.11 3.18
986 1054 0.539051 CGCCATCTCCTCAAACTCCT 59.461 55.000 0.00 0.00 0.00 3.69
987 1055 0.462759 CCGCCATCTCCTCAAACTCC 60.463 60.000 0.00 0.00 0.00 3.85
1106 1174 1.226717 CTCAACTCTACGGCTCGGC 60.227 63.158 0.00 0.00 0.00 5.54
1107 1175 1.226717 GCTCAACTCTACGGCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
1109 1177 0.179124 CAGGCTCAACTCTACGGCTC 60.179 60.000 0.00 0.00 0.00 4.70
1110 1178 1.608717 CCAGGCTCAACTCTACGGCT 61.609 60.000 0.00 0.00 0.00 5.52
1111 1179 1.153549 CCAGGCTCAACTCTACGGC 60.154 63.158 0.00 0.00 0.00 5.68
1113 1181 1.517257 CGCCAGGCTCAACTCTACG 60.517 63.158 10.54 0.00 0.00 3.51
1114 1182 1.153549 CCGCCAGGCTCAACTCTAC 60.154 63.158 10.54 0.00 0.00 2.59
1115 1183 1.192146 AACCGCCAGGCTCAACTCTA 61.192 55.000 10.54 0.00 42.76 2.43
1116 1184 2.456287 GAACCGCCAGGCTCAACTCT 62.456 60.000 10.54 0.00 42.76 3.24
1117 1185 2.032681 AACCGCCAGGCTCAACTC 59.967 61.111 10.54 0.00 42.76 3.01
1118 1186 2.032681 GAACCGCCAGGCTCAACT 59.967 61.111 10.54 0.00 42.76 3.16
1119 1187 2.032681 AGAACCGCCAGGCTCAAC 59.967 61.111 10.54 0.00 42.76 3.18
1120 1188 2.347490 GAGAACCGCCAGGCTCAA 59.653 61.111 10.54 0.00 42.76 3.02
1121 1189 3.706373 GGAGAACCGCCAGGCTCA 61.706 66.667 10.54 0.00 42.76 4.26
1131 1199 2.037381 AGAACAAGAGGAACGGAGAACC 59.963 50.000 0.00 0.00 0.00 3.62
1132 1200 3.388345 AGAACAAGAGGAACGGAGAAC 57.612 47.619 0.00 0.00 0.00 3.01
1133 1201 3.728845 CAAGAACAAGAGGAACGGAGAA 58.271 45.455 0.00 0.00 0.00 2.87
1134 1202 2.548067 GCAAGAACAAGAGGAACGGAGA 60.548 50.000 0.00 0.00 0.00 3.71
1135 1203 1.801178 GCAAGAACAAGAGGAACGGAG 59.199 52.381 0.00 0.00 0.00 4.63
1136 1204 1.416401 AGCAAGAACAAGAGGAACGGA 59.584 47.619 0.00 0.00 0.00 4.69
1137 1205 1.884235 AGCAAGAACAAGAGGAACGG 58.116 50.000 0.00 0.00 0.00 4.44
1138 1206 2.096713 CGAAGCAAGAACAAGAGGAACG 60.097 50.000 0.00 0.00 0.00 3.95
1139 1207 2.872858 ACGAAGCAAGAACAAGAGGAAC 59.127 45.455 0.00 0.00 0.00 3.62
1140 1208 3.194005 ACGAAGCAAGAACAAGAGGAA 57.806 42.857 0.00 0.00 0.00 3.36
1141 1209 2.910688 ACGAAGCAAGAACAAGAGGA 57.089 45.000 0.00 0.00 0.00 3.71
1142 1210 4.690748 TGATTACGAAGCAAGAACAAGAGG 59.309 41.667 0.00 0.00 0.00 3.69
1143 1211 5.845985 TGATTACGAAGCAAGAACAAGAG 57.154 39.130 0.00 0.00 0.00 2.85
1144 1212 6.612247 TTTGATTACGAAGCAAGAACAAGA 57.388 33.333 0.00 0.00 38.13 3.02
1145 1213 6.901699 CTTTGATTACGAAGCAAGAACAAG 57.098 37.500 0.00 0.00 38.13 3.16
1171 1239 1.345415 GGAGGGGATTCGCCGTAATAA 59.655 52.381 13.55 0.00 41.60 1.40
1173 1242 1.752833 GGAGGGGATTCGCCGTAAT 59.247 57.895 13.55 0.00 41.60 1.89
1192 1261 2.413310 TAGAACTTCATTTCCGGCCC 57.587 50.000 0.00 0.00 0.00 5.80
1215 1285 2.223923 CGAGAAATCGGAGCTGGATTCT 60.224 50.000 9.40 8.53 33.16 2.40
1216 1286 2.131183 CGAGAAATCGGAGCTGGATTC 58.869 52.381 9.40 4.96 33.16 2.52
1223 1293 5.463724 ACAAATTATCTCGAGAAATCGGAGC 59.536 40.000 20.91 0.00 0.00 4.70
1229 1299 6.555315 GCACCAACAAATTATCTCGAGAAAT 58.445 36.000 20.91 16.34 0.00 2.17
1231 1301 4.092821 CGCACCAACAAATTATCTCGAGAA 59.907 41.667 20.91 3.87 0.00 2.87
1235 1305 3.416277 CACGCACCAACAAATTATCTCG 58.584 45.455 0.00 0.00 0.00 4.04
1240 1310 0.663688 ACGCACGCACCAACAAATTA 59.336 45.000 0.00 0.00 0.00 1.40
1242 1312 1.299014 CACGCACGCACCAACAAAT 60.299 52.632 0.00 0.00 0.00 2.32
1311 1389 3.041940 CGCGAGACCACAACCACC 61.042 66.667 0.00 0.00 0.00 4.61
1312 1390 2.279918 ACGCGAGACCACAACCAC 60.280 61.111 15.93 0.00 0.00 4.16
1313 1391 2.279851 CACGCGAGACCACAACCA 60.280 61.111 15.93 0.00 0.00 3.67
1363 1441 3.816994 CCCTACCCTAAATAGTGGCAAC 58.183 50.000 0.00 0.00 0.00 4.17
1365 1443 1.772453 GCCCTACCCTAAATAGTGGCA 59.228 52.381 0.00 0.00 36.64 4.92
1368 1446 3.454812 ACACAGCCCTACCCTAAATAGTG 59.545 47.826 0.00 0.00 0.00 2.74
1380 1458 3.254657 CCGAAAATCAAAACACAGCCCTA 59.745 43.478 0.00 0.00 0.00 3.53
1382 1460 2.223947 ACCGAAAATCAAAACACAGCCC 60.224 45.455 0.00 0.00 0.00 5.19
1385 1463 5.276348 GCTCAAACCGAAAATCAAAACACAG 60.276 40.000 0.00 0.00 0.00 3.66
1389 1467 5.966636 AAGCTCAAACCGAAAATCAAAAC 57.033 34.783 0.00 0.00 0.00 2.43
1390 1468 6.976636 AAAAGCTCAAACCGAAAATCAAAA 57.023 29.167 0.00 0.00 0.00 2.44
1391 1469 6.976636 AAAAAGCTCAAACCGAAAATCAAA 57.023 29.167 0.00 0.00 0.00 2.69
1426 1504 1.934463 CGAATTTCGGCCATCTCGG 59.066 57.895 10.95 0.00 36.00 4.63
1436 1514 8.986039 AAATTTTTGAAAATGACCGAATTTCG 57.014 26.923 11.81 11.81 38.53 3.46
1437 1515 9.091255 CGAAATTTTTGAAAATGACCGAATTTC 57.909 29.630 9.79 9.79 38.53 2.17
1438 1516 8.067189 CCGAAATTTTTGAAAATGACCGAATTT 58.933 29.630 14.15 0.00 38.53 1.82
1439 1517 7.571892 CCGAAATTTTTGAAAATGACCGAATT 58.428 30.769 14.15 0.00 38.53 2.17
1440 1518 6.347321 GCCGAAATTTTTGAAAATGACCGAAT 60.347 34.615 14.15 0.00 38.53 3.34
1441 1519 5.050702 GCCGAAATTTTTGAAAATGACCGAA 60.051 36.000 14.15 0.00 38.53 4.30
1442 1520 4.446051 GCCGAAATTTTTGAAAATGACCGA 59.554 37.500 14.15 0.00 38.53 4.69
1443 1521 4.447389 AGCCGAAATTTTTGAAAATGACCG 59.553 37.500 2.71 6.75 38.53 4.79
1444 1522 5.922739 AGCCGAAATTTTTGAAAATGACC 57.077 34.783 2.71 0.00 38.53 4.02
1445 1523 9.877137 ATTTTAGCCGAAATTTTTGAAAATGAC 57.123 25.926 2.71 0.81 38.53 3.06
1453 1531 9.101971 GCAGTTAAATTTTAGCCGAAATTTTTG 57.898 29.630 19.34 16.39 43.17 2.44
1454 1532 8.007152 CGCAGTTAAATTTTAGCCGAAATTTTT 58.993 29.630 19.34 9.16 43.17 1.94
1455 1533 7.382759 TCGCAGTTAAATTTTAGCCGAAATTTT 59.617 29.630 19.34 12.93 43.17 1.82
1456 1534 6.864165 TCGCAGTTAAATTTTAGCCGAAATTT 59.136 30.769 18.58 18.58 45.84 1.82
1457 1535 6.383415 TCGCAGTTAAATTTTAGCCGAAATT 58.617 32.000 0.00 2.68 40.06 1.82
1458 1536 5.945155 TCGCAGTTAAATTTTAGCCGAAAT 58.055 33.333 0.00 0.00 0.00 2.17
1459 1537 5.359716 TCGCAGTTAAATTTTAGCCGAAA 57.640 34.783 0.00 0.00 0.00 3.46
1460 1538 5.554822 ATCGCAGTTAAATTTTAGCCGAA 57.445 34.783 0.00 0.00 0.00 4.30
1461 1539 5.554822 AATCGCAGTTAAATTTTAGCCGA 57.445 34.783 0.00 6.75 0.00 5.54
1462 1540 5.797934 TCAAATCGCAGTTAAATTTTAGCCG 59.202 36.000 0.00 0.00 0.00 5.52
1463 1541 6.806739 AGTCAAATCGCAGTTAAATTTTAGCC 59.193 34.615 0.00 0.00 0.00 3.93
1464 1542 7.796958 AGTCAAATCGCAGTTAAATTTTAGC 57.203 32.000 0.00 0.00 0.00 3.09
1471 1549 9.737427 TCAAATTTAAGTCAAATCGCAGTTAAA 57.263 25.926 0.00 0.00 35.74 1.52
1472 1550 9.176181 GTCAAATTTAAGTCAAATCGCAGTTAA 57.824 29.630 0.00 0.00 35.74 2.01
1473 1551 7.806014 GGTCAAATTTAAGTCAAATCGCAGTTA 59.194 33.333 0.00 0.00 35.74 2.24
1474 1552 6.640907 GGTCAAATTTAAGTCAAATCGCAGTT 59.359 34.615 0.00 0.00 35.74 3.16
1475 1553 6.149633 GGTCAAATTTAAGTCAAATCGCAGT 58.850 36.000 0.00 0.00 35.74 4.40
1476 1554 6.148948 TGGTCAAATTTAAGTCAAATCGCAG 58.851 36.000 0.00 0.00 35.74 5.18
1477 1555 6.078202 TGGTCAAATTTAAGTCAAATCGCA 57.922 33.333 0.00 0.00 35.74 5.10
1478 1556 7.401484 TTTGGTCAAATTTAAGTCAAATCGC 57.599 32.000 0.00 0.00 35.74 4.58
1495 1573 7.326454 TGATCAAGTTTGACAAATTTTGGTCA 58.674 30.769 24.99 24.99 41.93 4.02
1496 1574 7.769272 TGATCAAGTTTGACAAATTTTGGTC 57.231 32.000 22.13 22.13 40.49 4.02
1497 1575 8.735692 ATTGATCAAGTTTGACAAATTTTGGT 57.264 26.923 14.54 15.80 40.49 3.67
1500 1578 9.919348 CGAAATTGATCAAGTTTGACAAATTTT 57.081 25.926 25.00 11.36 41.11 1.82
1501 1579 8.550376 CCGAAATTGATCAAGTTTGACAAATTT 58.450 29.630 28.95 19.14 42.30 1.82
1502 1580 7.307337 GCCGAAATTGATCAAGTTTGACAAATT 60.307 33.333 28.95 7.45 40.49 1.82
1503 1581 6.146021 GCCGAAATTGATCAAGTTTGACAAAT 59.854 34.615 28.95 4.99 40.49 2.32
1504 1582 5.461737 GCCGAAATTGATCAAGTTTGACAAA 59.538 36.000 28.95 0.00 40.49 2.83
1505 1583 4.981674 GCCGAAATTGATCAAGTTTGACAA 59.018 37.500 28.95 0.00 40.49 3.18
1506 1584 4.545610 GCCGAAATTGATCAAGTTTGACA 58.454 39.130 28.95 0.00 40.49 3.58
1507 1585 3.920412 GGCCGAAATTGATCAAGTTTGAC 59.080 43.478 28.95 21.00 40.49 3.18
1508 1586 3.826157 AGGCCGAAATTGATCAAGTTTGA 59.174 39.130 28.95 1.29 42.14 2.69
1509 1587 4.178545 AGGCCGAAATTGATCAAGTTTG 57.821 40.909 23.15 23.15 31.54 2.93
1510 1588 5.975693 TTAGGCCGAAATTGATCAAGTTT 57.024 34.783 20.94 16.21 0.00 2.66
1511 1589 5.710099 TCTTTAGGCCGAAATTGATCAAGTT 59.290 36.000 20.22 20.22 0.00 2.66
1512 1590 5.253330 TCTTTAGGCCGAAATTGATCAAGT 58.747 37.500 14.54 8.63 0.00 3.16
1513 1591 5.818136 TCTTTAGGCCGAAATTGATCAAG 57.182 39.130 14.54 0.71 0.00 3.02
1514 1592 7.054124 AGTATCTTTAGGCCGAAATTGATCAA 58.946 34.615 11.26 11.26 0.00 2.57
1515 1593 6.591935 AGTATCTTTAGGCCGAAATTGATCA 58.408 36.000 11.73 0.00 0.00 2.92
1516 1594 7.497925 AAGTATCTTTAGGCCGAAATTGATC 57.502 36.000 11.73 6.68 0.00 2.92
1517 1595 7.013369 GGAAAGTATCTTTAGGCCGAAATTGAT 59.987 37.037 11.73 13.47 0.00 2.57
1518 1596 6.317893 GGAAAGTATCTTTAGGCCGAAATTGA 59.682 38.462 11.73 7.08 0.00 2.57
1519 1597 6.495706 GGAAAGTATCTTTAGGCCGAAATTG 58.504 40.000 11.73 1.44 0.00 2.32
1520 1598 5.296035 CGGAAAGTATCTTTAGGCCGAAATT 59.704 40.000 11.73 1.99 39.85 1.82
1521 1599 4.814771 CGGAAAGTATCTTTAGGCCGAAAT 59.185 41.667 11.73 0.54 39.85 2.17
1522 1600 4.186159 CGGAAAGTATCTTTAGGCCGAAA 58.814 43.478 10.82 10.82 39.85 3.46
1523 1601 3.788937 CGGAAAGTATCTTTAGGCCGAA 58.211 45.455 12.34 0.00 39.85 4.30
1524 1602 2.482490 GCGGAAAGTATCTTTAGGCCGA 60.482 50.000 18.23 0.00 39.85 5.54
1525 1603 1.865340 GCGGAAAGTATCTTTAGGCCG 59.135 52.381 12.97 12.97 40.38 6.13
1526 1604 2.219458 GGCGGAAAGTATCTTTAGGCC 58.781 52.381 15.14 15.14 0.00 5.19
1527 1605 2.219458 GGGCGGAAAGTATCTTTAGGC 58.781 52.381 11.88 11.88 0.00 3.93
1528 1606 2.171870 TGGGGCGGAAAGTATCTTTAGG 59.828 50.000 0.00 0.00 0.00 2.69
1529 1607 3.467803 CTGGGGCGGAAAGTATCTTTAG 58.532 50.000 0.00 0.00 0.00 1.85
1530 1608 2.171870 CCTGGGGCGGAAAGTATCTTTA 59.828 50.000 0.00 0.00 0.00 1.85
1531 1609 1.064685 CCTGGGGCGGAAAGTATCTTT 60.065 52.381 0.00 0.00 0.00 2.52
1532 1610 0.546598 CCTGGGGCGGAAAGTATCTT 59.453 55.000 0.00 0.00 0.00 2.40
1533 1611 1.984288 GCCTGGGGCGGAAAGTATCT 61.984 60.000 0.00 0.00 39.62 1.98
1534 1612 1.526225 GCCTGGGGCGGAAAGTATC 60.526 63.158 0.00 0.00 39.62 2.24
1535 1613 2.595655 GCCTGGGGCGGAAAGTAT 59.404 61.111 0.00 0.00 39.62 2.12
1552 1630 1.351707 CGAATTTCGGCCATGTCGG 59.648 57.895 10.95 0.00 36.00 4.79
1553 1631 4.974468 CGAATTTCGGCCATGTCG 57.026 55.556 10.95 0.00 36.00 4.35
1562 1640 3.526825 GGATTTCGGCCGAATTTCG 57.473 52.632 38.89 11.81 40.07 3.46
1586 1664 3.117046 GTGTTTTGATTTTCGGCCGAAA 58.883 40.909 41.63 41.63 41.69 3.46
1587 1665 2.099263 TGTGTTTTGATTTTCGGCCGAA 59.901 40.909 35.81 35.81 0.00 4.30
1588 1666 1.676529 TGTGTTTTGATTTTCGGCCGA 59.323 42.857 27.28 27.28 0.00 5.54
1589 1667 2.050691 CTGTGTTTTGATTTTCGGCCG 58.949 47.619 22.12 22.12 0.00 6.13
1590 1668 1.792367 GCTGTGTTTTGATTTTCGGCC 59.208 47.619 0.00 0.00 0.00 6.13
1591 1669 1.451651 CGCTGTGTTTTGATTTTCGGC 59.548 47.619 0.00 0.00 0.00 5.54
1592 1670 2.050691 CCGCTGTGTTTTGATTTTCGG 58.949 47.619 0.00 0.00 0.00 4.30
1593 1671 2.726633 ACCGCTGTGTTTTGATTTTCG 58.273 42.857 0.00 0.00 0.00 3.46
1594 1672 4.226761 CCTACCGCTGTGTTTTGATTTTC 58.773 43.478 0.00 0.00 0.00 2.29
1595 1673 3.005367 CCCTACCGCTGTGTTTTGATTTT 59.995 43.478 0.00 0.00 0.00 1.82
1596 1674 2.556622 CCCTACCGCTGTGTTTTGATTT 59.443 45.455 0.00 0.00 0.00 2.17
1597 1675 2.159382 CCCTACCGCTGTGTTTTGATT 58.841 47.619 0.00 0.00 0.00 2.57
1598 1676 1.073284 ACCCTACCGCTGTGTTTTGAT 59.927 47.619 0.00 0.00 0.00 2.57
1599 1677 0.470766 ACCCTACCGCTGTGTTTTGA 59.529 50.000 0.00 0.00 0.00 2.69
1600 1678 1.802365 GTACCCTACCGCTGTGTTTTG 59.198 52.381 0.00 0.00 0.00 2.44
1601 1679 1.606224 CGTACCCTACCGCTGTGTTTT 60.606 52.381 0.00 0.00 0.00 2.43
1602 1680 0.037975 CGTACCCTACCGCTGTGTTT 60.038 55.000 0.00 0.00 0.00 2.83
1603 1681 1.181098 ACGTACCCTACCGCTGTGTT 61.181 55.000 0.00 0.00 0.00 3.32
1604 1682 0.322456 TACGTACCCTACCGCTGTGT 60.322 55.000 0.00 0.00 0.00 3.72
1605 1683 0.379669 CTACGTACCCTACCGCTGTG 59.620 60.000 0.00 0.00 0.00 3.66
1606 1684 0.749454 CCTACGTACCCTACCGCTGT 60.749 60.000 0.00 0.00 0.00 4.40
1607 1685 0.749454 ACCTACGTACCCTACCGCTG 60.749 60.000 0.00 0.00 0.00 5.18
1608 1686 0.034089 AACCTACGTACCCTACCGCT 60.034 55.000 0.00 0.00 0.00 5.52
1609 1687 0.101219 CAACCTACGTACCCTACCGC 59.899 60.000 0.00 0.00 0.00 5.68
1610 1688 1.463674 ACAACCTACGTACCCTACCG 58.536 55.000 0.00 0.00 0.00 4.02
1611 1689 3.130516 GGTTACAACCTACGTACCCTACC 59.869 52.174 3.80 0.00 45.75 3.18
1612 1690 4.371855 GGTTACAACCTACGTACCCTAC 57.628 50.000 3.80 0.00 45.75 3.18
1714 1792 1.166531 ACAACTTTGAGCGCAGTCCC 61.167 55.000 11.47 0.00 0.00 4.46
1725 1803 1.101454 CAACGCGAACGACAACTTTG 58.899 50.000 15.93 0.00 43.93 2.77
1732 1810 1.818221 AACAGAGCAACGCGAACGAC 61.818 55.000 15.93 0.66 43.93 4.34
1744 1822 4.033587 TGTGTTAACGTCAAGAAACAGAGC 59.966 41.667 0.26 0.00 32.83 4.09
2183 2275 2.681706 ACTGTCAGAGAGAAATGCACG 58.318 47.619 6.91 0.00 0.00 5.34
2213 2305 2.196295 GAGACATGTACGCCAGTCTC 57.804 55.000 15.98 15.98 46.81 3.36
2232 2324 3.551454 CCCTGAAAAGTGCTTGACATGTG 60.551 47.826 1.15 0.00 0.00 3.21
2352 2444 5.482163 TCGATCATATTGATACCTGGCAA 57.518 39.130 0.00 0.00 37.20 4.52
2426 2530 7.031372 GCATGAGCATTAACAATCAGAAAAGA 58.969 34.615 0.00 0.00 41.58 2.52
2427 2531 7.218145 GCATGAGCATTAACAATCAGAAAAG 57.782 36.000 0.00 0.00 41.58 2.27
2482 2586 0.958822 ACAGTTTGCCAACCGGAATC 59.041 50.000 9.46 0.00 32.70 2.52
2579 2683 2.343101 CAGAACGATCCGCTGGTTTTA 58.657 47.619 0.00 0.00 0.00 1.52
2588 2692 0.171231 TCAGTCAGCAGAACGATCCG 59.829 55.000 0.00 0.00 0.00 4.18
2687 2796 2.286067 CCCGATGTAGTACTCGTCGTTC 60.286 54.545 23.27 6.97 41.06 3.95
2833 2974 3.242381 GCAGCCATGAAACAAACACAAAC 60.242 43.478 0.00 0.00 0.00 2.93
2903 3045 1.201880 AGGACTTTCTCGCCGTAGTTC 59.798 52.381 0.00 0.00 0.00 3.01
3036 3178 4.389374 CTTGTGATGACTTGGTACCAACT 58.611 43.478 23.69 14.70 0.00 3.16
3422 3577 3.002791 TCGTGCTAAATCTTGCTGGAAG 58.997 45.455 2.09 2.09 0.00 3.46
3425 3580 1.061131 CGTCGTGCTAAATCTTGCTGG 59.939 52.381 0.00 0.00 0.00 4.85
3496 3653 3.576118 AGTGCTGCAGAGACTCTTTTCTA 59.424 43.478 20.43 0.00 0.00 2.10
3553 3710 2.045536 GCCTCCAGCAGGGTCTTG 60.046 66.667 0.00 0.00 43.70 3.02
3695 3852 5.298777 AGCTGGAATCAAGAAATGTGATAGC 59.701 40.000 0.00 0.00 35.92 2.97
3715 3876 0.718343 GTTTAGCGTCTCTGCAGCTG 59.282 55.000 10.11 10.11 41.80 4.24
3741 3902 0.167470 CTGCATTTCTCACACGGCAG 59.833 55.000 0.00 0.00 42.14 4.85
3742 3903 0.250252 TCTGCATTTCTCACACGGCA 60.250 50.000 0.00 0.00 0.00 5.69
3743 3904 0.874390 TTCTGCATTTCTCACACGGC 59.126 50.000 0.00 0.00 0.00 5.68
4346 4510 1.078759 GATTGACTCCGTCCGTGCTG 61.079 60.000 0.00 0.00 0.00 4.41
4349 4513 2.010145 ATTGATTGACTCCGTCCGTG 57.990 50.000 0.00 0.00 0.00 4.94
4363 4527 6.784473 GGGGGAAGGAGATTGATTTTATTGAT 59.216 38.462 0.00 0.00 0.00 2.57
4407 4574 1.131420 GCGTCGCTGAAGCTTTGAG 59.869 57.895 10.68 0.82 39.32 3.02
4408 4575 1.157257 TTGCGTCGCTGAAGCTTTGA 61.157 50.000 19.50 0.00 37.87 2.69
4409 4576 0.993746 GTTGCGTCGCTGAAGCTTTG 60.994 55.000 19.50 0.00 37.87 2.77
4410 4577 1.279840 GTTGCGTCGCTGAAGCTTT 59.720 52.632 19.50 0.00 37.87 3.51
4411 4578 2.607892 GGTTGCGTCGCTGAAGCTT 61.608 57.895 19.50 0.00 37.87 3.74
4412 4579 2.154798 TAGGTTGCGTCGCTGAAGCT 62.155 55.000 20.99 20.99 37.87 3.74
4444 4611 2.317040 AGACGGACACAGAAGGAAAGA 58.683 47.619 0.00 0.00 0.00 2.52
4445 4612 2.821991 AGACGGACACAGAAGGAAAG 57.178 50.000 0.00 0.00 0.00 2.62
4449 4616 1.799181 CGCATAGACGGACACAGAAGG 60.799 57.143 0.00 0.00 0.00 3.46
4488 4655 8.827677 ACAGTACAAAGTAAAGCAAAGTAGAAG 58.172 33.333 0.00 0.00 0.00 2.85
4555 4727 4.678269 ACGACGCACCTCGACACG 62.678 66.667 0.00 0.00 41.67 4.49
4581 4756 5.227152 TCAATCTGACAAAAGAATCGACGA 58.773 37.500 0.00 0.00 0.00 4.20
4582 4757 5.119279 ACTCAATCTGACAAAAGAATCGACG 59.881 40.000 0.00 0.00 0.00 5.12
4583 4758 6.473397 ACTCAATCTGACAAAAGAATCGAC 57.527 37.500 0.00 0.00 0.00 4.20
4584 4759 8.601845 TTAACTCAATCTGACAAAAGAATCGA 57.398 30.769 0.00 0.00 0.00 3.59
4585 4760 9.107367 GTTTAACTCAATCTGACAAAAGAATCG 57.893 33.333 0.00 0.00 0.00 3.34
4586 4761 9.107367 CGTTTAACTCAATCTGACAAAAGAATC 57.893 33.333 0.00 0.00 0.00 2.52
4803 5032 3.070878 TCATGGTTGCTATATCTTCCGCA 59.929 43.478 0.00 0.00 0.00 5.69
4805 5034 4.887748 AGTCATGGTTGCTATATCTTCCG 58.112 43.478 0.00 0.00 0.00 4.30
4812 5041 2.801699 CGCGGAAGTCATGGTTGCTATA 60.802 50.000 0.00 0.00 0.00 1.31
4813 5042 1.668419 GCGGAAGTCATGGTTGCTAT 58.332 50.000 0.00 0.00 0.00 2.97
4815 5044 2.034879 CGCGGAAGTCATGGTTGCT 61.035 57.895 0.00 0.00 0.00 3.91
4914 5149 9.179552 CGATGAACATCAAACTCACAAATAAAA 57.820 29.630 13.92 0.00 37.69 1.52
4991 5226 1.351017 ACATTCGTGGAGGTCATGGTT 59.649 47.619 0.00 0.00 33.31 3.67
4992 5227 0.984230 ACATTCGTGGAGGTCATGGT 59.016 50.000 0.00 0.00 33.31 3.55
5000 5235 7.250445 TCATTATGAAATGACATTCGTGGAG 57.750 36.000 0.05 0.00 45.17 3.86
5027 5262 9.424319 TGACAAATGTTTTAAGTGCTTGTAAAA 57.576 25.926 0.00 0.00 0.00 1.52
5041 5276 9.868277 TTTTTACTGATGACTGACAAATGTTTT 57.132 25.926 0.00 0.00 0.00 2.43
5131 5373 3.356290 AGCTGACCAAACACAAGAAAGT 58.644 40.909 0.00 0.00 0.00 2.66
5136 5378 3.378112 TCTTTGAGCTGACCAAACACAAG 59.622 43.478 0.00 0.00 31.13 3.16
5177 5419 0.537188 AATGGTTCGATGAGGACGCT 59.463 50.000 0.00 0.00 0.00 5.07
5191 5433 0.181350 GCGAAGATGGGAGGAATGGT 59.819 55.000 0.00 0.00 0.00 3.55
5193 5435 1.590932 CTGCGAAGATGGGAGGAATG 58.409 55.000 0.00 0.00 0.00 2.67
5216 5467 5.071788 TGGACCTAAACACACTCTCAAAGAT 59.928 40.000 0.00 0.00 0.00 2.40
5250 5501 5.830912 ACAATGAATATTATTGCACCGTGG 58.169 37.500 0.00 0.00 38.72 4.94
5252 5503 6.756074 CCAAACAATGAATATTATTGCACCGT 59.244 34.615 13.23 0.00 38.72 4.83
5255 5506 8.700722 TGACCAAACAATGAATATTATTGCAC 57.299 30.769 13.23 0.00 38.72 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.