Multiple sequence alignment - TraesCS1B01G140300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G140300 chr1B 100.000 8109 0 0 1 8109 185547027 185555135 0.000000e+00 14975.0
1 TraesCS1B01G140300 chr1B 89.521 773 54 6 1 766 372138540 372139292 0.000000e+00 953.0
2 TraesCS1B01G140300 chr1B 91.800 500 39 2 269 766 440162363 440162862 0.000000e+00 695.0
3 TraesCS1B01G140300 chr1B 86.476 525 58 8 5499 6015 185551914 185551395 1.530000e-156 564.0
4 TraesCS1B01G140300 chr1B 86.564 521 59 6 4376 4891 185553036 185552522 1.530000e-156 564.0
5 TraesCS1B01G140300 chr1B 90.099 202 19 1 1741 1941 89439043 89439244 2.240000e-65 261.0
6 TraesCS1B01G140300 chr1B 95.000 60 3 0 2709 2768 185549704 185549763 2.410000e-15 95.3
7 TraesCS1B01G140300 chr1B 95.000 60 3 0 2678 2737 185549735 185549794 2.410000e-15 95.3
8 TraesCS1B01G140300 chr1B 97.222 36 1 0 7260 7295 65552619 65552584 2.440000e-05 62.1
9 TraesCS1B01G140300 chr1D 94.191 2582 92 11 2678 5230 121621908 121624460 0.000000e+00 3884.0
10 TraesCS1B01G140300 chr1D 94.082 2501 106 14 5228 7717 121624620 121627089 0.000000e+00 3760.0
11 TraesCS1B01G140300 chr1D 92.692 1040 60 10 913 1944 121619046 121620077 0.000000e+00 1485.0
12 TraesCS1B01G140300 chr1D 92.836 670 21 6 1954 2597 121621218 121621886 0.000000e+00 946.0
13 TraesCS1B01G140300 chr1D 91.821 379 22 3 7739 8109 121627082 121627459 3.350000e-143 520.0
14 TraesCS1B01G140300 chr1D 83.647 532 56 9 5514 6015 121624121 121623591 9.530000e-129 472.0
15 TraesCS1B01G140300 chr1D 88.949 371 17 4 1 367 116692425 116692775 3.470000e-118 436.0
16 TraesCS1B01G140300 chr1D 96.667 90 2 1 2680 2768 121621878 121621967 1.820000e-31 148.0
17 TraesCS1B01G140300 chr1D 94.915 59 2 1 2711 2768 121621878 121621936 3.120000e-14 91.6
18 TraesCS1B01G140300 chr1D 97.143 35 1 0 2082 2116 362858517 362858551 8.790000e-05 60.2
19 TraesCS1B01G140300 chr4B 90.026 772 48 9 1 766 581005081 581005829 0.000000e+00 972.0
20 TraesCS1B01G140300 chr4B 89.535 774 54 5 1 768 502756247 502755495 0.000000e+00 955.0
21 TraesCS1B01G140300 chr4B 88.531 776 62 8 1 770 255712609 255713363 0.000000e+00 915.0
22 TraesCS1B01G140300 chr4B 89.527 592 37 3 4 590 605388866 605388295 0.000000e+00 726.0
23 TraesCS1B01G140300 chr2B 89.730 779 54 11 1 773 453973530 453972772 0.000000e+00 972.0
24 TraesCS1B01G140300 chr2B 89.677 775 54 5 1 769 734098946 734098192 0.000000e+00 965.0
25 TraesCS1B01G140300 chr2B 89.392 773 56 12 1 767 239766862 239767614 0.000000e+00 950.0
26 TraesCS1B01G140300 chr2B 89.249 772 52 8 1 766 429495129 429494383 0.000000e+00 937.0
27 TraesCS1B01G140300 chr2B 88.817 778 57 8 1 770 358805151 358804396 0.000000e+00 928.0
28 TraesCS1B01G140300 chr2B 82.456 228 26 7 1730 1944 314793657 314793883 3.860000e-43 187.0
29 TraesCS1B01G140300 chr7B 89.447 777 55 6 1 770 116576797 116577553 0.000000e+00 955.0
30 TraesCS1B01G140300 chr7B 91.700 506 38 3 269 770 106687640 106687135 0.000000e+00 699.0
31 TraesCS1B01G140300 chr7B 96.970 33 1 0 7376 7408 74811712 74811680 1.000000e-03 56.5
32 TraesCS1B01G140300 chr6B 89.583 768 54 5 1 762 491850890 491850143 0.000000e+00 952.0
33 TraesCS1B01G140300 chr2D 89.304 776 55 8 1 768 401142728 401143483 0.000000e+00 948.0
34 TraesCS1B01G140300 chr2D 88.889 774 59 7 4 770 99495302 99494549 0.000000e+00 928.0
35 TraesCS1B01G140300 chr5B 88.789 776 58 8 1 770 675023394 675024146 0.000000e+00 924.0
36 TraesCS1B01G140300 chr5B 81.481 216 23 5 1741 1943 179221687 179221898 2.340000e-35 161.0
37 TraesCS1B01G140300 chr5B 95.122 41 0 2 5974 6013 252280360 252280321 6.790000e-06 63.9
38 TraesCS1B01G140300 chr3B 90.338 207 19 1 1736 1941 795971664 795971458 3.730000e-68 270.0
39 TraesCS1B01G140300 chr3B 89.231 65 5 2 2068 2131 633518118 633518055 6.750000e-11 80.5
40 TraesCS1B01G140300 chr3B 94.000 50 2 1 2072 2121 597790290 597790338 3.140000e-09 75.0
41 TraesCS1B01G140300 chr6D 91.327 196 16 1 1750 1944 229384699 229384504 4.820000e-67 267.0
42 TraesCS1B01G140300 chr6D 83.333 78 10 3 2050 2127 187394441 187394367 1.460000e-07 69.4
43 TraesCS1B01G140300 chr3A 82.684 231 24 5 1728 1943 9492790 9492561 2.990000e-44 191.0
44 TraesCS1B01G140300 chr3A 91.837 49 4 0 7259 7307 667200114 667200066 1.460000e-07 69.4
45 TraesCS1B01G140300 chr3A 93.478 46 1 2 2071 2116 379399501 379399458 5.250000e-07 67.6
46 TraesCS1B01G140300 chr4A 81.081 222 25 5 1735 1943 740854941 740855158 2.340000e-35 161.0
47 TraesCS1B01G140300 chr4A 87.681 138 16 1 1738 1874 546375186 546375323 8.420000e-35 159.0
48 TraesCS1B01G140300 chr5A 90.000 60 4 2 5954 6012 577484490 577484548 8.730000e-10 76.8
49 TraesCS1B01G140300 chr7D 100.000 28 0 0 5983 6010 572962959 572962986 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G140300 chr1B 185547027 185555135 8108 False 14975.0 14975 100.000000 1 8109 1 chr1B.!!$F2 8108
1 TraesCS1B01G140300 chr1B 372138540 372139292 752 False 953.0 953 89.521000 1 766 1 chr1B.!!$F3 765
2 TraesCS1B01G140300 chr1B 185551395 185553036 1641 True 564.0 564 86.520000 4376 6015 2 chr1B.!!$R2 1639
3 TraesCS1B01G140300 chr1D 121619046 121627459 8413 False 1547.8 3884 93.886286 913 8109 7 chr1D.!!$F3 7196
4 TraesCS1B01G140300 chr1D 121623591 121624121 530 True 472.0 472 83.647000 5514 6015 1 chr1D.!!$R1 501
5 TraesCS1B01G140300 chr4B 581005081 581005829 748 False 972.0 972 90.026000 1 766 1 chr4B.!!$F2 765
6 TraesCS1B01G140300 chr4B 502755495 502756247 752 True 955.0 955 89.535000 1 768 1 chr4B.!!$R1 767
7 TraesCS1B01G140300 chr4B 255712609 255713363 754 False 915.0 915 88.531000 1 770 1 chr4B.!!$F1 769
8 TraesCS1B01G140300 chr4B 605388295 605388866 571 True 726.0 726 89.527000 4 590 1 chr4B.!!$R2 586
9 TraesCS1B01G140300 chr2B 453972772 453973530 758 True 972.0 972 89.730000 1 773 1 chr2B.!!$R3 772
10 TraesCS1B01G140300 chr2B 734098192 734098946 754 True 965.0 965 89.677000 1 769 1 chr2B.!!$R4 768
11 TraesCS1B01G140300 chr2B 239766862 239767614 752 False 950.0 950 89.392000 1 767 1 chr2B.!!$F1 766
12 TraesCS1B01G140300 chr2B 429494383 429495129 746 True 937.0 937 89.249000 1 766 1 chr2B.!!$R2 765
13 TraesCS1B01G140300 chr2B 358804396 358805151 755 True 928.0 928 88.817000 1 770 1 chr2B.!!$R1 769
14 TraesCS1B01G140300 chr7B 116576797 116577553 756 False 955.0 955 89.447000 1 770 1 chr7B.!!$F1 769
15 TraesCS1B01G140300 chr7B 106687135 106687640 505 True 699.0 699 91.700000 269 770 1 chr7B.!!$R2 501
16 TraesCS1B01G140300 chr6B 491850143 491850890 747 True 952.0 952 89.583000 1 762 1 chr6B.!!$R1 761
17 TraesCS1B01G140300 chr2D 401142728 401143483 755 False 948.0 948 89.304000 1 768 1 chr2D.!!$F1 767
18 TraesCS1B01G140300 chr2D 99494549 99495302 753 True 928.0 928 88.889000 4 770 1 chr2D.!!$R1 766
19 TraesCS1B01G140300 chr5B 675023394 675024146 752 False 924.0 924 88.789000 1 770 1 chr5B.!!$F2 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 368 0.109132 GGATGCTTGCGAAAGGGTTG 60.109 55.0 5.02 0.0 0.00 3.77 F
825 837 0.251209 GGAGAAAGTCCCCACAACCC 60.251 60.0 0.00 0.0 39.88 4.11 F
1422 1439 0.380378 GTTTTGCCTGACGAAGCACA 59.620 50.0 0.00 0.0 39.10 4.57 F
1424 1441 0.463654 TTTGCCTGACGAAGCACAGT 60.464 50.0 0.00 0.0 39.10 3.55 F
1425 1442 0.880278 TTGCCTGACGAAGCACAGTC 60.880 55.0 0.00 0.0 39.10 3.51 F
2785 3993 0.390603 CCCAAATCGACGTGGCTACA 60.391 55.0 10.18 0.0 33.21 2.74 F
3472 4681 2.080654 AGCCTTTTGTGCCCTTGTTA 57.919 45.0 0.00 0.0 0.00 2.41 F
5056 6616 0.988832 TCTTTATCAAGCCCCACCGT 59.011 50.0 0.00 0.0 0.00 4.83 F
5421 7146 0.038166 GACATGGCCAACCTCTTCCA 59.962 55.0 10.96 0.0 36.63 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 1350 0.437295 ACGCAATCACGAGTTAACGC 59.563 50.000 0.00 0.00 36.70 4.84 R
2677 3853 0.402504 TGGCACGGGAAGTAAATGGT 59.597 50.000 0.00 0.00 0.00 3.55 R
2687 3863 0.988832 AGGTTCTTATTGGCACGGGA 59.011 50.000 0.00 0.00 0.00 5.14 R
2749 3956 1.707989 TGGGTTCTTATTGGCACAGGA 59.292 47.619 0.00 0.00 42.39 3.86 R
2822 4030 3.256383 TGCAGATGAACCAGATGTTTTGG 59.744 43.478 0.00 0.00 37.29 3.28 R
4282 5491 0.324738 TTGTTGGGTGGGTTTGCTCA 60.325 50.000 0.00 0.00 0.00 4.26 R
5275 6997 0.107214 GCCCGGATTGAAGTCATCCA 60.107 55.000 0.73 0.00 34.22 3.41 R
6852 8613 0.173935 CTGACTGAGGCTCTGAGCAG 59.826 60.000 28.95 23.94 44.75 4.24 R
7116 8877 0.597568 TTCAATTGCGTGCCTCCTTG 59.402 50.000 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 195 3.737559 AGGGAATGCATTGTGGAGTAA 57.262 42.857 18.59 0.00 0.00 2.24
212 217 6.560253 AATTATTAGATGATGGGTTGCGAC 57.440 37.500 0.00 0.00 0.00 5.19
272 277 1.295020 AAGGGACCGATTGGATCCAA 58.705 50.000 28.92 28.92 40.47 3.53
280 285 5.781138 ACCGATTGGATCCAAAAGGGACC 62.781 52.174 35.28 18.90 44.01 4.46
295 300 2.042433 AGGGACCGATTGGATCCAAAAA 59.958 45.455 30.28 9.37 39.55 1.94
356 361 0.672091 TAGTTGCGGATGCTTGCGAA 60.672 50.000 17.57 3.52 43.34 4.70
363 368 0.109132 GGATGCTTGCGAAAGGGTTG 60.109 55.000 5.02 0.00 0.00 3.77
412 417 1.170290 AACAACACCTAAGCACCGGC 61.170 55.000 0.00 0.00 41.61 6.13
465 471 7.327275 GCAAACACGAATTAAACCAACATGATA 59.673 33.333 0.00 0.00 0.00 2.15
530 536 8.940952 ACTTTGCTTATCATAAGAGACTGTTTC 58.059 33.333 8.74 0.00 0.00 2.78
587 593 6.482308 ACCTTACTGCACTTTTGTTACTACTG 59.518 38.462 0.00 0.00 0.00 2.74
688 698 7.267128 TCTTGCTGAAAATCACTTGTCATTTT 58.733 30.769 0.00 0.00 35.38 1.82
691 701 7.939782 TGCTGAAAATCACTTGTCATTTTCTA 58.060 30.769 18.53 8.54 44.30 2.10
755 767 7.626999 AGCTACAATTGACCCCATATACTTA 57.373 36.000 13.59 0.00 0.00 2.24
773 785 4.538262 TGGGTTATCAGGGCCCAT 57.462 55.556 27.56 12.80 46.59 4.00
774 786 2.240510 TGGGTTATCAGGGCCCATC 58.759 57.895 27.56 1.69 46.59 3.51
775 787 0.328450 TGGGTTATCAGGGCCCATCT 60.328 55.000 27.56 10.12 46.59 2.90
776 788 1.060954 TGGGTTATCAGGGCCCATCTA 60.061 52.381 27.56 8.97 46.59 1.98
777 789 1.351350 GGGTTATCAGGGCCCATCTAC 59.649 57.143 27.56 14.67 41.93 2.59
778 790 2.054799 GGTTATCAGGGCCCATCTACA 58.945 52.381 27.56 0.00 0.00 2.74
779 791 2.644798 GGTTATCAGGGCCCATCTACAT 59.355 50.000 27.56 8.42 0.00 2.29
780 792 3.560025 GGTTATCAGGGCCCATCTACATG 60.560 52.174 27.56 12.05 0.00 3.21
801 813 2.648059 GAGGATCCACATGAACTTGGG 58.352 52.381 15.82 0.00 33.25 4.12
802 814 1.995542 AGGATCCACATGAACTTGGGT 59.004 47.619 15.82 0.00 33.25 4.51
803 815 3.189606 AGGATCCACATGAACTTGGGTA 58.810 45.455 15.82 0.00 33.25 3.69
804 816 3.200825 AGGATCCACATGAACTTGGGTAG 59.799 47.826 15.82 0.00 33.25 3.18
805 817 3.054361 GGATCCACATGAACTTGGGTAGT 60.054 47.826 6.95 0.00 39.32 2.73
806 818 3.417069 TCCACATGAACTTGGGTAGTG 57.583 47.619 0.00 0.00 37.12 2.74
807 819 2.039746 TCCACATGAACTTGGGTAGTGG 59.960 50.000 0.00 0.00 44.76 4.00
808 820 2.039746 CCACATGAACTTGGGTAGTGGA 59.960 50.000 0.00 0.00 45.92 4.02
809 821 3.338249 CACATGAACTTGGGTAGTGGAG 58.662 50.000 0.00 0.00 37.12 3.86
810 822 3.007940 CACATGAACTTGGGTAGTGGAGA 59.992 47.826 0.00 0.00 37.12 3.71
811 823 3.650942 ACATGAACTTGGGTAGTGGAGAA 59.349 43.478 0.00 0.00 37.12 2.87
812 824 4.104102 ACATGAACTTGGGTAGTGGAGAAA 59.896 41.667 0.00 0.00 37.12 2.52
813 825 4.351874 TGAACTTGGGTAGTGGAGAAAG 57.648 45.455 0.00 0.00 37.12 2.62
814 826 3.714798 TGAACTTGGGTAGTGGAGAAAGT 59.285 43.478 0.00 0.00 37.12 2.66
815 827 4.202326 TGAACTTGGGTAGTGGAGAAAGTC 60.202 45.833 0.00 0.00 37.12 3.01
817 829 1.652947 TGGGTAGTGGAGAAAGTCCC 58.347 55.000 0.00 0.00 46.31 4.46
818 830 0.910338 GGGTAGTGGAGAAAGTCCCC 59.090 60.000 0.00 0.00 46.31 4.81
819 831 1.652947 GGTAGTGGAGAAAGTCCCCA 58.347 55.000 0.00 0.00 46.31 4.96
820 832 1.278413 GGTAGTGGAGAAAGTCCCCAC 59.722 57.143 0.91 0.91 46.31 4.61
823 835 1.605753 GTGGAGAAAGTCCCCACAAC 58.394 55.000 4.23 0.00 46.31 3.32
824 836 0.476771 TGGAGAAAGTCCCCACAACC 59.523 55.000 0.00 0.00 46.31 3.77
825 837 0.251209 GGAGAAAGTCCCCACAACCC 60.251 60.000 0.00 0.00 39.88 4.11
826 838 0.771755 GAGAAAGTCCCCACAACCCT 59.228 55.000 0.00 0.00 0.00 4.34
827 839 1.982958 GAGAAAGTCCCCACAACCCTA 59.017 52.381 0.00 0.00 0.00 3.53
828 840 1.985895 AGAAAGTCCCCACAACCCTAG 59.014 52.381 0.00 0.00 0.00 3.02
829 841 1.703513 GAAAGTCCCCACAACCCTAGT 59.296 52.381 0.00 0.00 0.00 2.57
830 842 1.359168 AAGTCCCCACAACCCTAGTC 58.641 55.000 0.00 0.00 0.00 2.59
831 843 0.492276 AGTCCCCACAACCCTAGTCT 59.508 55.000 0.00 0.00 0.00 3.24
832 844 1.720533 AGTCCCCACAACCCTAGTCTA 59.279 52.381 0.00 0.00 0.00 2.59
833 845 2.108970 GTCCCCACAACCCTAGTCTAG 58.891 57.143 0.00 0.00 0.00 2.43
834 846 2.005350 TCCCCACAACCCTAGTCTAGA 58.995 52.381 8.56 0.00 0.00 2.43
835 847 2.590611 TCCCCACAACCCTAGTCTAGAT 59.409 50.000 8.56 0.00 0.00 1.98
836 848 2.700897 CCCCACAACCCTAGTCTAGATG 59.299 54.545 8.56 7.02 0.00 2.90
837 849 2.103263 CCCACAACCCTAGTCTAGATGC 59.897 54.545 8.56 0.00 0.00 3.91
838 850 2.766263 CCACAACCCTAGTCTAGATGCA 59.234 50.000 8.56 0.00 0.00 3.96
839 851 3.430929 CCACAACCCTAGTCTAGATGCAC 60.431 52.174 8.56 0.00 0.00 4.57
840 852 2.766828 ACAACCCTAGTCTAGATGCACC 59.233 50.000 8.56 0.00 0.00 5.01
841 853 2.766263 CAACCCTAGTCTAGATGCACCA 59.234 50.000 8.56 0.00 0.00 4.17
842 854 3.116096 ACCCTAGTCTAGATGCACCAA 57.884 47.619 8.56 0.00 0.00 3.67
843 855 3.034635 ACCCTAGTCTAGATGCACCAAG 58.965 50.000 8.56 0.00 0.00 3.61
844 856 3.300388 CCCTAGTCTAGATGCACCAAGA 58.700 50.000 8.56 0.00 0.00 3.02
845 857 3.900601 CCCTAGTCTAGATGCACCAAGAT 59.099 47.826 8.56 0.00 0.00 2.40
846 858 4.021544 CCCTAGTCTAGATGCACCAAGATC 60.022 50.000 8.56 0.00 0.00 2.75
847 859 4.021544 CCTAGTCTAGATGCACCAAGATCC 60.022 50.000 8.56 0.00 0.00 3.36
848 860 3.652055 AGTCTAGATGCACCAAGATCCT 58.348 45.455 0.00 0.00 0.00 3.24
849 861 3.640967 AGTCTAGATGCACCAAGATCCTC 59.359 47.826 0.00 0.00 0.00 3.71
850 862 2.968574 TCTAGATGCACCAAGATCCTCC 59.031 50.000 0.00 0.00 0.00 4.30
851 863 1.890552 AGATGCACCAAGATCCTCCT 58.109 50.000 0.00 0.00 0.00 3.69
852 864 2.203584 AGATGCACCAAGATCCTCCTT 58.796 47.619 0.00 0.00 0.00 3.36
853 865 2.579860 AGATGCACCAAGATCCTCCTTT 59.420 45.455 0.00 0.00 0.00 3.11
854 866 3.782523 AGATGCACCAAGATCCTCCTTTA 59.217 43.478 0.00 0.00 0.00 1.85
855 867 4.228210 AGATGCACCAAGATCCTCCTTTAA 59.772 41.667 0.00 0.00 0.00 1.52
856 868 4.380843 TGCACCAAGATCCTCCTTTAAA 57.619 40.909 0.00 0.00 0.00 1.52
857 869 4.735369 TGCACCAAGATCCTCCTTTAAAA 58.265 39.130 0.00 0.00 0.00 1.52
858 870 4.766891 TGCACCAAGATCCTCCTTTAAAAG 59.233 41.667 0.00 0.00 0.00 2.27
859 871 5.010282 GCACCAAGATCCTCCTTTAAAAGA 58.990 41.667 0.00 0.00 0.00 2.52
860 872 5.476945 GCACCAAGATCCTCCTTTAAAAGAA 59.523 40.000 0.00 0.00 0.00 2.52
861 873 6.015434 GCACCAAGATCCTCCTTTAAAAGAAA 60.015 38.462 0.00 0.00 0.00 2.52
862 874 7.310052 GCACCAAGATCCTCCTTTAAAAGAAAT 60.310 37.037 0.00 0.00 0.00 2.17
863 875 9.243105 CACCAAGATCCTCCTTTAAAAGAAATA 57.757 33.333 0.00 0.00 0.00 1.40
864 876 9.822727 ACCAAGATCCTCCTTTAAAAGAAATAA 57.177 29.630 0.00 0.00 0.00 1.40
891 903 7.163001 TCATATCTCAAGGGATAAGATCACG 57.837 40.000 0.00 0.00 37.89 4.35
892 904 6.948309 TCATATCTCAAGGGATAAGATCACGA 59.052 38.462 0.00 0.00 37.89 4.35
893 905 7.617329 TCATATCTCAAGGGATAAGATCACGAT 59.383 37.037 0.00 0.00 37.89 3.73
894 906 5.713792 TCTCAAGGGATAAGATCACGATC 57.286 43.478 0.00 0.00 37.89 3.69
895 907 4.524714 TCTCAAGGGATAAGATCACGATCC 59.475 45.833 10.60 10.60 37.89 3.36
896 908 3.255888 TCAAGGGATAAGATCACGATCCG 59.744 47.826 12.06 0.00 40.16 4.18
897 909 2.877866 AGGGATAAGATCACGATCCGT 58.122 47.619 12.06 10.52 40.16 4.69
898 910 4.030314 AGGGATAAGATCACGATCCGTA 57.970 45.455 11.77 0.00 40.16 4.02
899 911 4.404640 AGGGATAAGATCACGATCCGTAA 58.595 43.478 11.77 0.00 40.16 3.18
900 912 4.831155 AGGGATAAGATCACGATCCGTAAA 59.169 41.667 11.77 0.00 40.16 2.01
901 913 5.303589 AGGGATAAGATCACGATCCGTAAAA 59.696 40.000 11.77 0.00 40.16 1.52
902 914 5.987347 GGGATAAGATCACGATCCGTAAAAA 59.013 40.000 12.06 0.00 40.16 1.94
903 915 6.145696 GGGATAAGATCACGATCCGTAAAAAG 59.854 42.308 12.06 0.00 40.16 2.27
904 916 6.145696 GGATAAGATCACGATCCGTAAAAAGG 59.854 42.308 3.39 0.00 38.32 3.11
905 917 3.793559 AGATCACGATCCGTAAAAAGGG 58.206 45.455 3.39 0.00 38.32 3.95
906 918 2.389962 TCACGATCCGTAAAAAGGGG 57.610 50.000 0.00 0.00 38.32 4.79
907 919 1.901159 TCACGATCCGTAAAAAGGGGA 59.099 47.619 0.00 0.00 38.32 4.81
908 920 2.502538 TCACGATCCGTAAAAAGGGGAT 59.497 45.455 0.00 0.00 43.09 3.85
911 923 2.490991 GATCCGTAAAAAGGGGATCGG 58.509 52.381 3.76 0.00 44.73 4.18
928 940 4.700365 GCGGCCTTGTTTCGTGGC 62.700 66.667 0.00 0.00 45.42 5.01
964 976 0.860533 CGGTCCTTTTGTTTCGCGTA 59.139 50.000 5.77 0.00 0.00 4.42
965 977 1.461897 CGGTCCTTTTGTTTCGCGTAT 59.538 47.619 5.77 0.00 0.00 3.06
970 982 2.492001 CTTTTGTTTCGCGTATCCGTG 58.508 47.619 5.77 0.00 45.74 4.94
971 983 0.791422 TTTGTTTCGCGTATCCGTGG 59.209 50.000 5.77 0.00 44.52 4.94
973 985 2.509786 TTTCGCGTATCCGTGGGC 60.510 61.111 5.77 0.00 44.52 5.36
1001 1013 2.510906 GGCACGGCCCATATGTCT 59.489 61.111 0.00 0.00 44.06 3.41
1033 1045 1.079503 GATTTGTCGTCCACTCCTGC 58.920 55.000 0.00 0.00 0.00 4.85
1154 1171 1.226802 CCGATCGACTCCACTGCAG 60.227 63.158 18.66 13.48 0.00 4.41
1191 1208 2.983592 CCTGGGGCGTTGGTTGTC 60.984 66.667 0.00 0.00 0.00 3.18
1199 1216 2.604174 CGTTGGTTGTCCGGCAGTC 61.604 63.158 0.00 0.00 36.30 3.51
1301 1318 0.668706 CATCTGGTGGATCGATCGGC 60.669 60.000 18.81 13.26 31.27 5.54
1312 1329 2.793946 GATCGGCTGCAATTGCGT 59.206 55.556 24.58 6.91 45.83 5.24
1321 1338 2.343544 GCTGCAATTGCGTTGATTCTTC 59.656 45.455 24.58 1.54 45.83 2.87
1333 1350 1.067142 TGATTCTTCCGTTCGTCTGGG 60.067 52.381 0.00 0.00 0.00 4.45
1354 1371 2.531610 GCGTTAACTCGTGATTGCGTAC 60.532 50.000 3.71 0.00 0.00 3.67
1362 1379 0.570734 GTGATTGCGTACGATGACGG 59.429 55.000 21.65 0.00 43.13 4.79
1367 1384 2.795973 CGTACGATGACGGGAGCA 59.204 61.111 10.44 0.00 44.46 4.26
1419 1436 1.082104 CCGTTTTGCCTGACGAAGC 60.082 57.895 4.67 0.00 41.53 3.86
1420 1437 1.646540 CGTTTTGCCTGACGAAGCA 59.353 52.632 0.00 0.00 41.53 3.91
1421 1438 0.657368 CGTTTTGCCTGACGAAGCAC 60.657 55.000 0.00 0.00 41.53 4.40
1422 1439 0.380378 GTTTTGCCTGACGAAGCACA 59.620 50.000 0.00 0.00 39.10 4.57
1423 1440 0.662619 TTTTGCCTGACGAAGCACAG 59.337 50.000 0.00 0.00 39.10 3.66
1424 1441 0.463654 TTTGCCTGACGAAGCACAGT 60.464 50.000 0.00 0.00 39.10 3.55
1425 1442 0.880278 TTGCCTGACGAAGCACAGTC 60.880 55.000 0.00 0.00 39.10 3.51
1426 1443 2.375766 GCCTGACGAAGCACAGTCG 61.376 63.158 0.00 0.00 44.10 4.18
1427 1444 2.375766 CCTGACGAAGCACAGTCGC 61.376 63.158 0.00 0.00 42.27 5.19
1428 1445 1.372251 CTGACGAAGCACAGTCGCT 60.372 57.895 0.00 0.00 46.67 4.93
1445 1462 3.361940 GTCGCTTTTTGCATTAGCTTGAC 59.638 43.478 11.79 9.29 43.06 3.18
1506 1524 0.964358 GGTGCTTGCCTGAGATTGCT 60.964 55.000 0.00 0.00 0.00 3.91
1508 1526 2.086869 GTGCTTGCCTGAGATTGCTTA 58.913 47.619 0.00 0.00 0.00 3.09
1599 1618 7.669304 TGATGTTCACTGGGAAGATTATTTTGA 59.331 33.333 3.62 0.00 39.41 2.69
1656 1675 3.507622 GCTCACCTCCATTTATTATGGGC 59.492 47.826 4.10 0.00 39.60 5.36
1661 1680 4.653801 ACCTCCATTTATTATGGGCCAAAC 59.346 41.667 11.89 0.00 39.60 2.93
1667 1686 7.566879 TCCATTTATTATGGGCCAAACTTACAT 59.433 33.333 11.89 0.00 39.60 2.29
1668 1687 8.210265 CCATTTATTATGGGCCAAACTTACATT 58.790 33.333 11.89 0.00 35.58 2.71
1672 1691 6.865834 TTATGGGCCAAACTTACATTCAAT 57.134 33.333 11.89 0.00 0.00 2.57
1677 1696 5.867174 GGGCCAAACTTACATTCAATAACAC 59.133 40.000 4.39 0.00 0.00 3.32
1699 1718 5.579511 CACGACGACCCAGTTTTATATCTTT 59.420 40.000 0.00 0.00 0.00 2.52
1702 1721 7.818930 ACGACGACCCAGTTTTATATCTTTTTA 59.181 33.333 0.00 0.00 0.00 1.52
1771 1790 5.966555 CAGATTTCTGTATTGGAGACCTCCG 60.967 48.000 11.11 0.00 44.34 4.63
1827 1846 6.509517 CGGAAACTGTAATGGACATGAATACG 60.510 42.308 0.00 0.00 37.45 3.06
1844 1863 7.208225 TGAATACGAATTCACATGTTTGGAA 57.792 32.000 6.22 0.00 45.17 3.53
1850 1869 5.620654 CGAATTCACATGTTTGGAAGCTCAT 60.621 40.000 6.22 0.00 0.00 2.90
1851 1870 5.733620 ATTCACATGTTTGGAAGCTCATT 57.266 34.783 0.00 0.00 0.00 2.57
1852 1871 5.534207 TTCACATGTTTGGAAGCTCATTT 57.466 34.783 0.00 0.00 0.00 2.32
1896 1916 4.315803 ACTAAATCCTGTTCGGTTGACAG 58.684 43.478 0.00 0.00 43.19 3.51
1897 1917 3.485463 AAATCCTGTTCGGTTGACAGA 57.515 42.857 5.87 0.00 45.72 3.41
1919 1939 7.720957 ACAGACTATGGAATTGCATATGCTTTA 59.279 33.333 27.13 13.64 42.66 1.85
1948 1968 8.936070 TTTATGCATCAAATCAAAATCAGAGG 57.064 30.769 0.19 0.00 0.00 3.69
1951 1971 6.392354 TGCATCAAATCAAAATCAGAGGAAC 58.608 36.000 0.00 0.00 0.00 3.62
1952 1972 6.015265 TGCATCAAATCAAAATCAGAGGAACA 60.015 34.615 0.00 0.00 0.00 3.18
1968 3119 4.210331 AGGAACATGCCCATAAGTTCATC 58.790 43.478 7.39 0.04 41.49 2.92
2095 3249 3.909430 TCTTCGAGAGTACGCAAATTGT 58.091 40.909 0.00 0.00 0.00 2.71
2124 3278 9.566432 ACCATATTTTTATAGAAGGCAGAGAAG 57.434 33.333 0.00 0.00 0.00 2.85
2145 3299 3.632145 AGATTTGTGGAAAACGAGCTGTT 59.368 39.130 0.00 0.00 44.59 3.16
2153 3307 3.641031 AACGAGCTGTTTGGTTTGC 57.359 47.368 0.00 0.00 37.59 3.68
2194 3348 6.549952 GCTGCAGCACTATTGGATATAATTC 58.450 40.000 33.36 0.00 41.59 2.17
2195 3349 6.149973 GCTGCAGCACTATTGGATATAATTCA 59.850 38.462 33.36 0.00 41.59 2.57
2230 3384 1.538047 TGCCTTTCAAGTCATCTGGC 58.462 50.000 0.00 0.00 39.33 4.85
2333 3487 2.257409 CTCCTGCGGGCATAAGTGGT 62.257 60.000 6.73 0.00 0.00 4.16
2334 3488 2.114670 CCTGCGGGCATAAGTGGTG 61.115 63.158 0.00 0.00 0.00 4.17
2388 3542 5.365403 TGCTGTAATTTTTGGGTAAGACG 57.635 39.130 0.00 0.00 0.00 4.18
2466 3621 8.321353 TGAAGTATCATCTCCTTATGTTGTGTT 58.679 33.333 0.00 0.00 0.00 3.32
2467 3622 8.723942 AAGTATCATCTCCTTATGTTGTGTTC 57.276 34.615 0.00 0.00 0.00 3.18
2601 3777 8.151141 CATGTTATCATGCATTCTACTCTGTT 57.849 34.615 0.00 0.00 43.66 3.16
2602 3778 8.618677 CATGTTATCATGCATTCTACTCTGTTT 58.381 33.333 0.00 0.00 43.66 2.83
2603 3779 8.565896 TGTTATCATGCATTCTACTCTGTTTT 57.434 30.769 0.00 0.00 0.00 2.43
2604 3780 8.668353 TGTTATCATGCATTCTACTCTGTTTTC 58.332 33.333 0.00 0.00 0.00 2.29
2605 3781 8.668353 GTTATCATGCATTCTACTCTGTTTTCA 58.332 33.333 0.00 0.00 0.00 2.69
2607 3783 6.233434 TCATGCATTCTACTCTGTTTTCAGT 58.767 36.000 0.00 0.00 46.98 3.41
2608 3784 7.386059 TCATGCATTCTACTCTGTTTTCAGTA 58.614 34.615 0.00 0.00 46.98 2.74
2609 3785 7.331934 TCATGCATTCTACTCTGTTTTCAGTAC 59.668 37.037 0.00 0.00 46.98 2.73
2610 3786 5.932303 TGCATTCTACTCTGTTTTCAGTACC 59.068 40.000 0.00 0.00 46.98 3.34
2611 3787 6.166982 GCATTCTACTCTGTTTTCAGTACCT 58.833 40.000 0.00 0.00 46.98 3.08
2612 3788 6.091441 GCATTCTACTCTGTTTTCAGTACCTG 59.909 42.308 0.00 0.00 46.98 4.00
2613 3789 6.971726 TTCTACTCTGTTTTCAGTACCTGA 57.028 37.500 0.00 0.00 46.98 3.86
2614 3790 6.328641 TCTACTCTGTTTTCAGTACCTGAC 57.671 41.667 0.00 0.00 46.98 3.51
2615 3791 5.831525 TCTACTCTGTTTTCAGTACCTGACA 59.168 40.000 0.00 0.00 46.98 3.58
2616 3792 5.552870 ACTCTGTTTTCAGTACCTGACAT 57.447 39.130 0.00 0.00 46.98 3.06
2617 3793 6.665992 ACTCTGTTTTCAGTACCTGACATA 57.334 37.500 0.00 0.00 46.98 2.29
2618 3794 7.062749 ACTCTGTTTTCAGTACCTGACATAA 57.937 36.000 0.00 0.00 46.98 1.90
2619 3795 7.680730 ACTCTGTTTTCAGTACCTGACATAAT 58.319 34.615 0.00 0.00 46.98 1.28
2620 3796 8.157476 ACTCTGTTTTCAGTACCTGACATAATT 58.843 33.333 0.00 0.00 46.98 1.40
2621 3797 9.653287 CTCTGTTTTCAGTACCTGACATAATTA 57.347 33.333 0.00 0.00 46.98 1.40
2660 3836 9.784531 AGTTTTCTTTCTTGATATCTCAGTTGA 57.215 29.630 3.98 0.00 31.68 3.18
2679 3855 9.444600 TCAGTTGATTTATGTAACTAGGAAACC 57.555 33.333 0.00 0.00 33.63 3.27
2680 3856 9.226606 CAGTTGATTTATGTAACTAGGAAACCA 57.773 33.333 0.00 0.00 33.63 3.67
2681 3857 9.975218 AGTTGATTTATGTAACTAGGAAACCAT 57.025 29.630 0.00 0.00 33.22 3.55
2689 3865 8.803397 ATGTAACTAGGAAACCATTTACTTCC 57.197 34.615 0.00 0.00 39.18 3.46
2690 3866 7.170277 TGTAACTAGGAAACCATTTACTTCCC 58.830 38.462 0.00 0.00 39.64 3.97
2749 3956 7.672239 TGCCAATAAGAACCTTACCATTTACTT 59.328 33.333 0.00 0.00 0.00 2.24
2785 3993 0.390603 CCCAAATCGACGTGGCTACA 60.391 55.000 10.18 0.00 33.21 2.74
2847 4055 3.639672 ACATCTGGTTCATCTGCATGA 57.360 42.857 0.00 0.00 37.24 3.07
2994 4202 4.546829 ATTCACTGAAGCAATGCCATTT 57.453 36.364 0.00 0.00 0.00 2.32
3010 4218 5.917462 TGCCATTTCAGATTTCTCTCGATA 58.083 37.500 0.00 0.00 0.00 2.92
3012 4220 6.426025 TGCCATTTCAGATTTCTCTCGATATG 59.574 38.462 0.00 0.00 0.00 1.78
3014 4222 7.172190 GCCATTTCAGATTTCTCTCGATATGAA 59.828 37.037 0.00 0.00 33.21 2.57
3151 4360 9.444600 TCATCTGTTAGTTAGGGTTTGTTATTC 57.555 33.333 0.00 0.00 0.00 1.75
3250 4459 5.536916 TGAACCAGTATTGAATTTTCGGGTT 59.463 36.000 10.06 10.06 38.70 4.11
3472 4681 2.080654 AGCCTTTTGTGCCCTTGTTA 57.919 45.000 0.00 0.00 0.00 2.41
3474 4683 2.972021 AGCCTTTTGTGCCCTTGTTAAT 59.028 40.909 0.00 0.00 0.00 1.40
3475 4684 4.156477 AGCCTTTTGTGCCCTTGTTAATA 58.844 39.130 0.00 0.00 0.00 0.98
3476 4685 4.021456 AGCCTTTTGTGCCCTTGTTAATAC 60.021 41.667 0.00 0.00 0.00 1.89
3477 4686 4.021456 GCCTTTTGTGCCCTTGTTAATACT 60.021 41.667 0.00 0.00 0.00 2.12
3478 4687 5.469479 CCTTTTGTGCCCTTGTTAATACTG 58.531 41.667 0.00 0.00 0.00 2.74
3479 4688 5.242838 CCTTTTGTGCCCTTGTTAATACTGA 59.757 40.000 0.00 0.00 0.00 3.41
3480 4689 6.071391 CCTTTTGTGCCCTTGTTAATACTGAT 60.071 38.462 0.00 0.00 0.00 2.90
3482 4691 6.509418 TTGTGCCCTTGTTAATACTGATTC 57.491 37.500 0.00 0.00 0.00 2.52
3483 4692 5.815581 TGTGCCCTTGTTAATACTGATTCT 58.184 37.500 0.00 0.00 0.00 2.40
3511 4720 8.198778 GTGGGTTATCTCCTTCTTTAAGTCTAG 58.801 40.741 0.00 0.00 0.00 2.43
3516 4725 7.849322 ATCTCCTTCTTTAAGTCTAGGATCC 57.151 40.000 2.48 2.48 34.67 3.36
3519 4728 8.221944 TCTCCTTCTTTAAGTCTAGGATCCTAG 58.778 40.741 34.61 34.61 45.38 3.02
3520 4729 7.884891 TCCTTCTTTAAGTCTAGGATCCTAGT 58.115 38.462 36.85 25.38 44.59 2.57
3547 4756 7.182817 AGTATTGATGTAGCACTCCAAAGTA 57.817 36.000 0.00 0.00 33.25 2.24
3552 4761 9.632638 ATTGATGTAGCACTCCAAAGTAAATAT 57.367 29.630 0.00 0.00 33.25 1.28
3554 4763 9.764363 TGATGTAGCACTCCAAAGTAAATATAG 57.236 33.333 0.00 0.00 33.25 1.31
3555 4764 9.209175 GATGTAGCACTCCAAAGTAAATATAGG 57.791 37.037 0.00 0.00 33.25 2.57
3556 4765 8.086143 TGTAGCACTCCAAAGTAAATATAGGT 57.914 34.615 0.00 0.00 33.25 3.08
3557 4766 8.545472 TGTAGCACTCCAAAGTAAATATAGGTT 58.455 33.333 0.00 0.00 33.25 3.50
3558 4767 9.392259 GTAGCACTCCAAAGTAAATATAGGTTT 57.608 33.333 0.00 0.00 33.25 3.27
3559 4768 8.507524 AGCACTCCAAAGTAAATATAGGTTTC 57.492 34.615 0.00 0.00 33.25 2.78
3560 4769 7.556635 AGCACTCCAAAGTAAATATAGGTTTCC 59.443 37.037 0.00 0.00 33.25 3.13
3624 4833 4.880164 ACAGGAACTACTAATCCTAGCCA 58.120 43.478 0.00 0.00 44.26 4.75
3637 4846 9.866655 ACTAATCCTAGCCATTTAATTTGATCA 57.133 29.630 0.00 0.00 0.00 2.92
3750 4959 2.176889 GGTCTGTTCCTACCTGCTACA 58.823 52.381 0.00 0.00 32.72 2.74
3783 4992 8.757982 ATCTTCAATTGTGGTTCTATATGCTT 57.242 30.769 5.13 0.00 0.00 3.91
3835 5044 7.751732 TGTGATAGCAATTGTACAGATTCAAC 58.248 34.615 7.40 0.00 0.00 3.18
3855 5064 6.959361 TCAACTAATGCTTCTTTGAGTTGAC 58.041 36.000 10.38 0.00 44.66 3.18
3878 5087 8.474025 TGACAAATTTGCCTTTCTCTTTTCTTA 58.526 29.630 18.12 0.00 0.00 2.10
3883 5092 7.581213 TTTGCCTTTCTCTTTTCTTATGTCA 57.419 32.000 0.00 0.00 0.00 3.58
4018 5227 7.525688 TTGCGTCTTCTGTAATTATTCTCTG 57.474 36.000 0.00 0.00 0.00 3.35
4045 5254 5.588648 TGCAAGAACCTTATAGTGGCATTAC 59.411 40.000 0.00 0.00 0.00 1.89
4076 5285 6.918022 CGCTCCCATTCATTTTATTTCCTAAC 59.082 38.462 0.00 0.00 0.00 2.34
4210 5419 6.722129 AGGTAGATGTCACCCTATCATTAGTC 59.278 42.308 0.00 0.00 36.67 2.59
4229 5438 5.930837 AGTCTAGTCAATTCTTGCTAGCT 57.069 39.130 17.23 0.00 37.34 3.32
4281 5490 8.895932 ACTTGAAGTTTTATCGTGAAATATGC 57.104 30.769 0.00 0.00 0.00 3.14
4282 5491 8.730680 ACTTGAAGTTTTATCGTGAAATATGCT 58.269 29.630 0.00 0.00 0.00 3.79
4286 5495 6.719365 AGTTTTATCGTGAAATATGCTGAGC 58.281 36.000 0.00 0.00 0.00 4.26
4334 5543 9.739276 TTTAATTCTCACCAACTTGACTGATAT 57.261 29.630 0.00 0.00 0.00 1.63
4383 5592 4.096081 CCGTGTAGAAACTACTACTCCCTG 59.904 50.000 9.73 0.00 42.01 4.45
4401 5610 2.677524 CGGTCCGGTGTGTAGGGA 60.678 66.667 2.34 0.00 0.00 4.20
4403 5612 1.610554 CGGTCCGGTGTGTAGGGATT 61.611 60.000 2.34 0.00 31.43 3.01
4592 5802 7.616935 ACATGTGAAAAGGAATCTACATGGATT 59.383 33.333 16.51 0.00 45.74 3.01
4638 5848 2.356793 CATGGATCGCTCGCCTCC 60.357 66.667 4.48 4.48 0.00 4.30
4639 5849 3.983494 ATGGATCGCTCGCCTCCG 61.983 66.667 6.34 0.00 31.36 4.63
4653 5867 1.450312 CTCCGCTTCCCGCTGAAAT 60.450 57.895 0.00 0.00 36.13 2.17
4781 6017 2.224769 TGTTGAGAATTGGGTGGAGTCC 60.225 50.000 0.73 0.73 0.00 3.85
4801 6037 2.911636 CCTATGGAGATTGGAGATGCCT 59.088 50.000 0.00 0.00 37.63 4.75
4856 6092 1.003839 TTCATGCCGTGGTGGAGAC 60.004 57.895 0.00 0.00 42.00 3.36
4857 6093 2.779951 TTCATGCCGTGGTGGAGACG 62.780 60.000 0.00 0.00 42.00 4.18
4862 6098 3.760035 CGTGGTGGAGACGGAGGG 61.760 72.222 0.00 0.00 33.08 4.30
4863 6099 4.083862 GTGGTGGAGACGGAGGGC 62.084 72.222 0.00 0.00 0.00 5.19
4864 6100 4.316823 TGGTGGAGACGGAGGGCT 62.317 66.667 0.00 0.00 0.00 5.19
4865 6101 2.043248 GGTGGAGACGGAGGGCTA 60.043 66.667 0.00 0.00 0.00 3.93
4866 6102 1.457831 GGTGGAGACGGAGGGCTAT 60.458 63.158 0.00 0.00 0.00 2.97
4867 6103 1.742768 GTGGAGACGGAGGGCTATG 59.257 63.158 0.00 0.00 0.00 2.23
4868 6104 2.134287 TGGAGACGGAGGGCTATGC 61.134 63.158 0.00 0.00 0.00 3.14
4964 6200 4.886496 AACCTAATTAGCCTCGGTATCC 57.114 45.455 6.99 0.00 0.00 2.59
5056 6616 0.988832 TCTTTATCAAGCCCCACCGT 59.011 50.000 0.00 0.00 0.00 4.83
5058 6618 2.572556 TCTTTATCAAGCCCCACCGTAA 59.427 45.455 0.00 0.00 0.00 3.18
5104 6664 3.318313 TGAGAGGAAGAAGAGGGTTGTT 58.682 45.455 0.00 0.00 0.00 2.83
5114 6674 2.101209 GAGGGTTGTTGCACACGTCG 62.101 60.000 0.00 0.00 0.00 5.12
5243 6965 1.134965 ACATGTAGAAGAGAGCACGGC 60.135 52.381 0.00 0.00 0.00 5.68
5289 7011 3.679389 AGTGGTGTGGATGACTTCAATC 58.321 45.455 0.00 0.00 0.00 2.67
5320 7042 3.188100 CGTCCATGCGTGCACGAT 61.188 61.111 41.19 26.84 43.02 3.73
5351 7073 3.049674 AGCCAACATCGTGCACGG 61.050 61.111 36.41 24.50 40.29 4.94
5368 7090 1.638467 GGCGACGCTCAATGACATC 59.362 57.895 20.77 0.00 0.00 3.06
5372 7094 2.082437 GACGCTCAATGACATCGGCG 62.082 60.000 20.26 20.26 46.47 6.46
5421 7146 0.038166 GACATGGCCAACCTCTTCCA 59.962 55.000 10.96 0.00 36.63 3.53
5425 7150 1.603739 GGCCAACCTCTTCCACCAC 60.604 63.158 0.00 0.00 0.00 4.16
5527 7252 1.000739 CCACCATGGCATGACCCTT 59.999 57.895 28.43 4.52 37.83 3.95
5557 7282 0.693049 ACGGCATGAACCTCCTCTTT 59.307 50.000 0.00 0.00 0.00 2.52
5579 7304 2.120718 ACGGCTTGACCCTCCTCT 59.879 61.111 0.00 0.00 33.26 3.69
5639 7368 5.084818 TCTCAACAACAGTGACTTTCTCA 57.915 39.130 0.00 0.00 0.00 3.27
5657 7386 4.346730 TCTCAATCCATTTTGCATCACCT 58.653 39.130 0.00 0.00 0.00 4.00
5675 7404 2.276309 CTGGCCAAGTCCATCCCTCC 62.276 65.000 7.01 0.00 35.22 4.30
5849 7603 1.585297 AACCGTTTTACACCACCGAG 58.415 50.000 0.00 0.00 0.00 4.63
5850 7604 0.249996 ACCGTTTTACACCACCGAGG 60.250 55.000 0.00 0.00 45.67 4.63
5859 7613 0.605589 CACCACCGAGGAAAAGGACC 60.606 60.000 0.00 0.00 41.22 4.46
5860 7614 0.767060 ACCACCGAGGAAAAGGACCT 60.767 55.000 0.00 0.00 41.22 3.85
5866 7620 1.618837 CGAGGAAAAGGACCTGAGTGA 59.381 52.381 0.00 0.00 37.93 3.41
5901 7656 3.077556 GGGGAGAGAGAGCGCCAA 61.078 66.667 2.29 0.00 37.11 4.52
5980 7735 9.326339 GTTTCGGAACAAATAGATTTTCACTAC 57.674 33.333 0.38 0.00 35.79 2.73
6041 7796 7.506328 AGTTTTGATTTAGGGAACAGTACAC 57.494 36.000 0.00 0.00 0.00 2.90
6092 7848 9.817809 TTACCAATAGTAGATTGCTAACTTCTG 57.182 33.333 0.00 0.00 30.92 3.02
6127 7883 2.871133 TGACGTAGCTGGTTATGAACG 58.129 47.619 0.00 0.00 36.48 3.95
6130 7886 2.754552 ACGTAGCTGGTTATGAACGGTA 59.245 45.455 0.00 0.00 34.81 4.02
6140 7896 7.127012 TGGTTATGAACGGTAAATGGAGATA 57.873 36.000 0.00 0.00 0.00 1.98
6143 7899 8.362639 GGTTATGAACGGTAAATGGAGATAGTA 58.637 37.037 0.00 0.00 0.00 1.82
6211 7967 4.864916 CTGTACAATGTACAGCCATGAC 57.135 45.455 32.31 5.51 38.51 3.06
6221 7977 2.356135 ACAGCCATGACGGTGAAATAC 58.644 47.619 7.96 0.00 36.97 1.89
6362 8121 7.814107 GTCATTTTTATCTGTCAAGCAATCCAA 59.186 33.333 0.00 0.00 0.00 3.53
6364 8123 9.158233 CATTTTTATCTGTCAAGCAATCCAATT 57.842 29.630 0.00 0.00 0.00 2.32
6372 8131 7.177216 TCTGTCAAGCAATCCAATTTATCTTGT 59.823 33.333 0.00 0.00 33.32 3.16
6469 8228 1.073897 ACCTGCCAACTCAGAAGCC 59.926 57.895 0.00 0.00 36.19 4.35
6499 8258 1.667830 CAGCGAGAACAAGCGGGAA 60.668 57.895 0.00 0.00 38.61 3.97
6693 8454 3.433615 AGTGACATTTTTAGACGCTCAGC 59.566 43.478 0.00 0.00 0.00 4.26
6799 8560 6.701340 TGTTAGCTCTGTTGTACTGAATGAT 58.299 36.000 0.00 0.00 0.00 2.45
6820 8581 6.045318 TGATACTGCTGAGCATAAGTTCTTC 58.955 40.000 7.94 2.21 38.13 2.87
6874 8635 0.457035 CTCAGAGCCTCAGTCAGAGC 59.543 60.000 0.00 0.00 43.31 4.09
6881 8642 2.011046 GCCTCAGTCAGAGCAACATCC 61.011 57.143 0.00 0.00 43.31 3.51
6948 8709 2.635338 GTTGTGGAAACCGCGACC 59.365 61.111 8.23 6.15 41.25 4.79
7036 8797 0.750850 TGTCTAAGCCGGGTAGATGC 59.249 55.000 6.57 0.00 30.52 3.91
7049 8810 3.369892 GGGTAGATGCTCAATGTGAGTGT 60.370 47.826 7.08 0.00 45.94 3.55
7051 8812 4.331168 GGTAGATGCTCAATGTGAGTGTTC 59.669 45.833 7.08 2.66 45.94 3.18
7116 8877 6.770076 TGCAAAGCATTACAAACAAAAAGAC 58.230 32.000 0.00 0.00 31.71 3.01
7126 8887 3.801114 AACAAAAAGACAAGGAGGCAC 57.199 42.857 0.00 0.00 0.00 5.01
7127 8888 1.676006 ACAAAAAGACAAGGAGGCACG 59.324 47.619 0.00 0.00 0.00 5.34
7163 8924 7.168219 ACTGGAATGAAGTTCTATGTTTGCTA 58.832 34.615 4.17 0.00 37.01 3.49
7168 8929 9.677567 GAATGAAGTTCTATGTTTGCTAAACAA 57.322 29.630 15.21 7.18 42.60 2.83
7179 8940 6.510746 GTTTGCTAAACAATTCTTGTGACC 57.489 37.500 6.82 0.00 44.59 4.02
7204 8965 4.036380 GCCTTCGGGTAATTCATTTCGAAT 59.964 41.667 0.00 0.00 40.81 3.34
7219 8980 6.701841 TCATTTCGAATAATGTAGGCAGAGTC 59.298 38.462 0.00 0.00 36.95 3.36
7224 8985 0.824759 AATGTAGGCAGAGTCGGACC 59.175 55.000 4.14 0.00 0.00 4.46
7289 9050 5.653507 TGATGTCAGATTTTTAAGCATGGC 58.346 37.500 0.00 0.00 0.00 4.40
7294 9055 6.591062 TGTCAGATTTTTAAGCATGGCAAATC 59.409 34.615 0.00 0.00 35.11 2.17
7297 9058 6.477688 CAGATTTTTAAGCATGGCAAATCGAT 59.522 34.615 0.00 0.00 38.39 3.59
7379 9140 4.141482 ACATAATTTGCCCATCTAGGACGT 60.141 41.667 0.00 0.00 41.22 4.34
7380 9141 3.366052 AATTTGCCCATCTAGGACGTT 57.634 42.857 0.00 0.00 41.22 3.99
7381 9142 2.396590 TTTGCCCATCTAGGACGTTC 57.603 50.000 0.00 0.00 41.22 3.95
7382 9143 0.174845 TTGCCCATCTAGGACGTTCG 59.825 55.000 0.00 0.00 41.22 3.95
7383 9144 0.681887 TGCCCATCTAGGACGTTCGA 60.682 55.000 0.00 0.00 41.22 3.71
7384 9145 0.674534 GCCCATCTAGGACGTTCGAT 59.325 55.000 0.00 0.00 41.22 3.59
7385 9146 1.068741 GCCCATCTAGGACGTTCGATT 59.931 52.381 0.00 0.00 41.22 3.34
7386 9147 2.483188 GCCCATCTAGGACGTTCGATTT 60.483 50.000 0.00 0.00 41.22 2.17
7387 9148 3.123804 CCCATCTAGGACGTTCGATTTG 58.876 50.000 0.00 0.00 41.22 2.32
7388 9149 3.430374 CCCATCTAGGACGTTCGATTTGT 60.430 47.826 0.00 0.00 41.22 2.83
7389 9150 3.797256 CCATCTAGGACGTTCGATTTGTC 59.203 47.826 0.00 4.20 41.22 3.18
7390 9151 4.421058 CATCTAGGACGTTCGATTTGTCA 58.579 43.478 12.42 0.00 34.32 3.58
7391 9152 4.713824 TCTAGGACGTTCGATTTGTCAT 57.286 40.909 12.42 8.84 34.32 3.06
7404 9165 6.027131 TCGATTTGTCATGCTTAAAAATCCG 58.973 36.000 3.96 0.00 35.00 4.18
7407 9168 4.335082 TGTCATGCTTAAAAATCCGACG 57.665 40.909 0.00 0.00 0.00 5.12
7413 9174 3.680937 TGCTTAAAAATCCGACGTTCGAT 59.319 39.130 8.63 1.28 43.74 3.59
7429 9190 3.034721 TCGATTTGTAGCGAACCAACT 57.965 42.857 0.00 0.00 39.54 3.16
7450 9211 4.038642 ACTTGTGGTTATCAAACGCCAATT 59.961 37.500 0.00 0.00 36.39 2.32
7509 9270 6.884295 TCCAAACATAACCTGAGTTTCCATAG 59.116 38.462 0.00 0.00 37.42 2.23
7586 9347 5.462530 AAGAAACGGAAACAAAATAGGGG 57.537 39.130 0.00 0.00 0.00 4.79
7614 9375 1.123928 CACATGAGTACTCCCTCCCC 58.876 60.000 20.11 0.00 0.00 4.81
7630 9391 4.569865 CCCTCCCCTTTTGTATACAAAGCT 60.570 45.833 25.62 0.00 45.34 3.74
7631 9392 4.399303 CCTCCCCTTTTGTATACAAAGCTG 59.601 45.833 25.62 19.75 45.34 4.24
7632 9393 3.761752 TCCCCTTTTGTATACAAAGCTGC 59.238 43.478 25.62 0.00 45.34 5.25
7690 9451 9.184523 AGTAAACTAATAAATAGCATGCCAACA 57.815 29.630 15.66 0.00 34.78 3.33
7698 9459 3.021473 GCATGCCAACACCATGGGG 62.021 63.158 14.08 14.08 41.01 4.96
7732 9493 4.001652 CCTCTCGTTAGGGTTTTCTTTCC 58.998 47.826 0.00 0.00 32.55 3.13
7733 9494 4.001652 CTCTCGTTAGGGTTTTCTTTCCC 58.998 47.826 0.00 0.00 43.71 3.97
7738 9499 1.289066 GGGTTTTCTTTCCCGCTGC 59.711 57.895 0.00 0.00 33.97 5.25
7739 9500 1.289066 GGTTTTCTTTCCCGCTGCC 59.711 57.895 0.00 0.00 0.00 4.85
7740 9501 1.289066 GTTTTCTTTCCCGCTGCCC 59.711 57.895 0.00 0.00 0.00 5.36
7741 9502 1.906333 TTTTCTTTCCCGCTGCCCC 60.906 57.895 0.00 0.00 0.00 5.80
7742 9503 3.879180 TTTCTTTCCCGCTGCCCCC 62.879 63.158 0.00 0.00 0.00 5.40
7770 9531 1.415672 GGAGACCTTGTCCCACCACA 61.416 60.000 0.00 0.00 32.18 4.17
7778 9539 1.227853 GTCCCACCACAAGAACGCT 60.228 57.895 0.00 0.00 0.00 5.07
7793 9554 0.526662 ACGCTGGTAGTTTCTCTCGG 59.473 55.000 0.00 0.00 0.00 4.63
7795 9556 0.460459 GCTGGTAGTTTCTCTCGGGC 60.460 60.000 0.00 0.00 0.00 6.13
7801 9562 3.383825 GGTAGTTTCTCTCGGGCTGATTA 59.616 47.826 0.00 0.00 0.00 1.75
7827 9588 3.000819 CCCTCGCACCACTACCCA 61.001 66.667 0.00 0.00 0.00 4.51
7864 9625 2.636412 TTCTCTCTCGTGGGCGTGG 61.636 63.158 0.00 0.00 39.49 4.94
7878 9647 2.021722 CGTGGGTGTGTGGTTTCAG 58.978 57.895 0.00 0.00 0.00 3.02
7888 9657 6.391537 GGTGTGTGGTTTCAGAAAGTTTTTA 58.608 36.000 0.00 0.00 0.00 1.52
7896 9665 6.405065 GGTTTCAGAAAGTTTTTACTCCCGTT 60.405 38.462 0.00 0.00 0.00 4.44
7911 9680 0.240945 CCGTTTGTTGCTAGGGCTTG 59.759 55.000 0.00 0.00 39.59 4.01
7930 9699 2.318908 TGCAAAGGAAGTGATGGCTTT 58.681 42.857 0.00 0.00 0.00 3.51
7951 9720 1.203287 TGGATCAAGCTCACGTGAGAG 59.797 52.381 42.03 30.21 44.74 3.20
7959 9728 1.537776 GCTCACGTGAGAGGGATGATG 60.538 57.143 42.03 18.12 44.74 3.07
7965 9734 2.392662 GTGAGAGGGATGATGTGGAGA 58.607 52.381 0.00 0.00 0.00 3.71
7967 9736 3.036819 TGAGAGGGATGATGTGGAGAAG 58.963 50.000 0.00 0.00 0.00 2.85
7992 9761 4.701651 TGATGAACATGTTAGGGCTTTCTG 59.298 41.667 11.95 0.00 0.00 3.02
7998 9767 3.703001 TGTTAGGGCTTTCTGAGGAAG 57.297 47.619 0.00 0.00 32.61 3.46
8033 9802 8.884124 ATGTGATTTTTGAAAAGGAGGATCTA 57.116 30.769 0.00 0.00 33.73 1.98
8063 9832 3.609853 TGATTCAATTCGTTGGCTAGCT 58.390 40.909 15.72 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.370519 TGATTTCTCCCGTGACCTCAAA 59.629 45.455 0.00 0.00 0.00 2.69
117 122 2.807967 CGATGTTCACATGACACCACTT 59.192 45.455 0.00 0.00 36.57 3.16
148 153 5.398581 CCTTAGGCCCAAATATGGTGAAGTA 60.399 44.000 0.00 0.00 46.01 2.24
190 195 5.620206 TGTCGCAACCCATCATCTAATAAT 58.380 37.500 0.00 0.00 0.00 1.28
212 217 6.238648 ACTGGGGTTTAAGTTTCTATCACTG 58.761 40.000 0.00 0.00 0.00 3.66
272 277 1.295020 TGGATCCAATCGGTCCCTTT 58.705 50.000 13.46 0.00 33.72 3.11
356 361 5.289510 ACCTCCTACTTATGATCAACCCTT 58.710 41.667 0.00 0.00 0.00 3.95
363 368 7.824779 ACTTGAACAAACCTCCTACTTATGATC 59.175 37.037 0.00 0.00 0.00 2.92
412 417 4.456535 TGATAATTTGATACGTGGGTGGG 58.543 43.478 0.00 0.00 0.00 4.61
465 471 9.063615 ACACGGAAATTTTATCTAGTCACTTTT 57.936 29.630 0.00 0.00 0.00 2.27
479 485 4.721132 TCTTGAGGGTACACGGAAATTTT 58.279 39.130 0.00 0.00 0.00 1.82
485 491 3.705051 AGTATTCTTGAGGGTACACGGA 58.295 45.455 0.00 0.00 0.00 4.69
558 564 4.432980 ACAAAAGTGCAGTAAGGTAGGT 57.567 40.909 0.00 0.00 0.00 3.08
559 565 5.995897 AGTAACAAAAGTGCAGTAAGGTAGG 59.004 40.000 0.00 0.00 0.00 3.18
587 593 3.857923 TTTGTAACGGCAAGTAACGAC 57.142 42.857 0.00 0.00 0.00 4.34
688 698 2.254152 ACCCAATGAGGAGCAGTAGA 57.746 50.000 0.00 0.00 41.22 2.59
691 701 0.036010 CGAACCCAATGAGGAGCAGT 60.036 55.000 0.00 0.00 41.22 4.40
779 791 2.025981 CCAAGTTCATGTGGATCCTCCA 60.026 50.000 14.23 10.18 45.98 3.86
780 792 2.648059 CCAAGTTCATGTGGATCCTCC 58.352 52.381 14.23 4.10 37.03 4.30
781 793 2.025887 ACCCAAGTTCATGTGGATCCTC 60.026 50.000 14.23 10.39 37.03 3.71
782 794 1.995542 ACCCAAGTTCATGTGGATCCT 59.004 47.619 14.23 0.00 37.03 3.24
783 795 2.514458 ACCCAAGTTCATGTGGATCC 57.486 50.000 4.20 4.20 37.03 3.36
784 796 3.941483 CACTACCCAAGTTCATGTGGATC 59.059 47.826 1.70 0.00 35.76 3.36
785 797 3.308402 CCACTACCCAAGTTCATGTGGAT 60.308 47.826 0.00 0.00 44.21 3.41
786 798 2.039746 CCACTACCCAAGTTCATGTGGA 59.960 50.000 0.00 0.00 44.21 4.02
787 799 2.039746 TCCACTACCCAAGTTCATGTGG 59.960 50.000 0.00 0.00 43.22 4.17
788 800 3.007940 TCTCCACTACCCAAGTTCATGTG 59.992 47.826 0.00 0.00 35.76 3.21
789 801 3.248024 TCTCCACTACCCAAGTTCATGT 58.752 45.455 0.00 0.00 35.76 3.21
790 802 3.981071 TCTCCACTACCCAAGTTCATG 57.019 47.619 0.00 0.00 35.76 3.07
791 803 4.351111 ACTTTCTCCACTACCCAAGTTCAT 59.649 41.667 0.00 0.00 35.76 2.57
792 804 3.714798 ACTTTCTCCACTACCCAAGTTCA 59.285 43.478 0.00 0.00 35.76 3.18
793 805 4.316645 GACTTTCTCCACTACCCAAGTTC 58.683 47.826 0.00 0.00 35.76 3.01
794 806 3.072622 GGACTTTCTCCACTACCCAAGTT 59.927 47.826 0.00 0.00 39.21 2.66
795 807 2.638363 GGACTTTCTCCACTACCCAAGT 59.362 50.000 0.00 0.00 39.21 3.16
796 808 2.027100 GGGACTTTCTCCACTACCCAAG 60.027 54.545 0.00 0.00 41.63 3.61
797 809 1.982958 GGGACTTTCTCCACTACCCAA 59.017 52.381 0.00 0.00 41.63 4.12
798 810 1.652947 GGGACTTTCTCCACTACCCA 58.347 55.000 0.00 0.00 41.63 4.51
799 811 0.910338 GGGGACTTTCTCCACTACCC 59.090 60.000 0.00 0.00 39.81 3.69
800 812 1.652947 TGGGGACTTTCTCCACTACC 58.347 55.000 0.00 0.00 43.43 3.18
805 817 0.476771 GGTTGTGGGGACTTTCTCCA 59.523 55.000 0.00 0.00 46.84 3.86
806 818 0.251209 GGGTTGTGGGGACTTTCTCC 60.251 60.000 0.00 0.00 37.60 3.71
807 819 0.771755 AGGGTTGTGGGGACTTTCTC 59.228 55.000 0.00 0.00 0.00 2.87
808 820 1.985895 CTAGGGTTGTGGGGACTTTCT 59.014 52.381 0.00 0.00 0.00 2.52
809 821 1.703513 ACTAGGGTTGTGGGGACTTTC 59.296 52.381 0.00 0.00 0.00 2.62
810 822 1.703513 GACTAGGGTTGTGGGGACTTT 59.296 52.381 0.00 0.00 0.00 2.66
811 823 1.132495 AGACTAGGGTTGTGGGGACTT 60.132 52.381 0.00 0.00 0.00 3.01
812 824 0.492276 AGACTAGGGTTGTGGGGACT 59.508 55.000 0.00 0.00 0.00 3.85
813 825 2.108970 CTAGACTAGGGTTGTGGGGAC 58.891 57.143 1.11 0.00 0.00 4.46
814 826 2.005350 TCTAGACTAGGGTTGTGGGGA 58.995 52.381 9.64 0.00 0.00 4.81
815 827 2.544844 TCTAGACTAGGGTTGTGGGG 57.455 55.000 9.64 0.00 0.00 4.96
816 828 2.103263 GCATCTAGACTAGGGTTGTGGG 59.897 54.545 9.64 0.00 0.00 4.61
817 829 2.766263 TGCATCTAGACTAGGGTTGTGG 59.234 50.000 9.64 0.00 0.00 4.17
818 830 3.430929 GGTGCATCTAGACTAGGGTTGTG 60.431 52.174 9.64 3.35 0.00 3.33
819 831 2.766828 GGTGCATCTAGACTAGGGTTGT 59.233 50.000 9.64 0.00 0.00 3.32
820 832 2.766263 TGGTGCATCTAGACTAGGGTTG 59.234 50.000 9.64 6.64 0.00 3.77
821 833 3.116096 TGGTGCATCTAGACTAGGGTT 57.884 47.619 9.64 0.00 0.00 4.11
822 834 2.848678 TGGTGCATCTAGACTAGGGT 57.151 50.000 9.64 0.00 0.00 4.34
823 835 3.300388 TCTTGGTGCATCTAGACTAGGG 58.700 50.000 7.05 4.02 0.00 3.53
824 836 4.021544 GGATCTTGGTGCATCTAGACTAGG 60.022 50.000 13.45 0.00 0.00 3.02
825 837 4.832266 AGGATCTTGGTGCATCTAGACTAG 59.168 45.833 13.45 2.81 0.00 2.57
826 838 4.809193 AGGATCTTGGTGCATCTAGACTA 58.191 43.478 13.45 0.00 0.00 2.59
827 839 3.640967 GAGGATCTTGGTGCATCTAGACT 59.359 47.826 13.45 7.22 0.00 3.24
828 840 3.244044 GGAGGATCTTGGTGCATCTAGAC 60.244 52.174 13.45 7.67 33.73 2.59
829 841 2.968574 GGAGGATCTTGGTGCATCTAGA 59.031 50.000 13.55 13.55 33.73 2.43
830 842 2.971330 AGGAGGATCTTGGTGCATCTAG 59.029 50.000 1.57 1.57 33.73 2.43
831 843 3.051940 AGGAGGATCTTGGTGCATCTA 57.948 47.619 0.00 0.00 33.73 1.98
832 844 1.890552 AGGAGGATCTTGGTGCATCT 58.109 50.000 0.00 0.00 33.73 2.90
833 845 2.725221 AAGGAGGATCTTGGTGCATC 57.275 50.000 0.00 0.00 33.73 3.91
834 846 4.591321 TTAAAGGAGGATCTTGGTGCAT 57.409 40.909 0.00 0.00 33.73 3.96
835 847 4.380843 TTTAAAGGAGGATCTTGGTGCA 57.619 40.909 0.00 0.00 33.73 4.57
836 848 5.010282 TCTTTTAAAGGAGGATCTTGGTGC 58.990 41.667 4.77 0.00 33.73 5.01
837 849 7.524717 TTTCTTTTAAAGGAGGATCTTGGTG 57.475 36.000 4.77 0.00 33.73 4.17
838 850 9.822727 TTATTTCTTTTAAAGGAGGATCTTGGT 57.177 29.630 4.77 0.00 33.73 3.67
865 877 8.907885 CGTGATCTTATCCCTTGAGATATGATA 58.092 37.037 8.90 0.00 40.75 2.15
866 878 7.617329 TCGTGATCTTATCCCTTGAGATATGAT 59.383 37.037 8.75 8.75 42.14 2.45
867 879 6.948309 TCGTGATCTTATCCCTTGAGATATGA 59.052 38.462 0.00 0.00 37.33 2.15
868 880 7.163001 TCGTGATCTTATCCCTTGAGATATG 57.837 40.000 0.00 0.00 30.64 1.78
869 881 7.069331 GGATCGTGATCTTATCCCTTGAGATAT 59.931 40.741 9.54 0.00 37.92 1.63
870 882 6.378564 GGATCGTGATCTTATCCCTTGAGATA 59.621 42.308 9.54 0.00 37.92 1.98
871 883 5.186797 GGATCGTGATCTTATCCCTTGAGAT 59.813 44.000 9.54 0.00 37.92 2.75
872 884 4.524714 GGATCGTGATCTTATCCCTTGAGA 59.475 45.833 9.54 0.00 37.92 3.27
873 885 4.617067 CGGATCGTGATCTTATCCCTTGAG 60.617 50.000 9.54 0.34 36.59 3.02
874 886 3.255888 CGGATCGTGATCTTATCCCTTGA 59.744 47.826 9.54 0.00 36.59 3.02
875 887 3.005897 ACGGATCGTGATCTTATCCCTTG 59.994 47.826 9.54 5.34 39.18 3.61
876 888 3.231818 ACGGATCGTGATCTTATCCCTT 58.768 45.455 9.54 2.24 39.18 3.95
877 889 2.877866 ACGGATCGTGATCTTATCCCT 58.122 47.619 9.54 3.11 39.18 4.20
878 890 4.778534 TTACGGATCGTGATCTTATCCC 57.221 45.455 9.54 1.54 41.39 3.85
879 891 6.145696 CCTTTTTACGGATCGTGATCTTATCC 59.854 42.308 9.54 10.02 41.39 2.59
880 892 6.145696 CCCTTTTTACGGATCGTGATCTTATC 59.854 42.308 9.54 0.00 41.39 1.75
881 893 5.989777 CCCTTTTTACGGATCGTGATCTTAT 59.010 40.000 9.54 0.00 41.39 1.73
882 894 5.353938 CCCTTTTTACGGATCGTGATCTTA 58.646 41.667 9.54 0.00 41.39 2.10
883 895 4.189231 CCCTTTTTACGGATCGTGATCTT 58.811 43.478 9.54 0.79 41.39 2.40
884 896 3.431766 CCCCTTTTTACGGATCGTGATCT 60.432 47.826 9.54 0.00 41.39 2.75
885 897 2.870411 CCCCTTTTTACGGATCGTGATC 59.130 50.000 3.03 1.11 41.39 2.92
886 898 2.502538 TCCCCTTTTTACGGATCGTGAT 59.497 45.455 3.03 0.00 41.39 3.06
887 899 1.901159 TCCCCTTTTTACGGATCGTGA 59.099 47.619 3.03 0.00 41.39 4.35
888 900 2.389962 TCCCCTTTTTACGGATCGTG 57.610 50.000 3.03 0.00 41.39 4.35
889 901 3.189618 GATCCCCTTTTTACGGATCGT 57.810 47.619 0.00 0.00 41.91 3.73
891 903 2.490991 CCGATCCCCTTTTTACGGATC 58.509 52.381 0.00 5.42 45.81 3.36
892 904 1.476291 GCCGATCCCCTTTTTACGGAT 60.476 52.381 0.00 0.00 42.40 4.18
893 905 0.107557 GCCGATCCCCTTTTTACGGA 60.108 55.000 0.00 0.00 42.40 4.69
894 906 1.433837 CGCCGATCCCCTTTTTACGG 61.434 60.000 0.00 0.00 42.63 4.02
895 907 1.433837 CCGCCGATCCCCTTTTTACG 61.434 60.000 0.00 0.00 0.00 3.18
896 908 1.721664 GCCGCCGATCCCCTTTTTAC 61.722 60.000 0.00 0.00 0.00 2.01
897 909 1.452470 GCCGCCGATCCCCTTTTTA 60.452 57.895 0.00 0.00 0.00 1.52
898 910 2.754254 GCCGCCGATCCCCTTTTT 60.754 61.111 0.00 0.00 0.00 1.94
899 911 4.815108 GGCCGCCGATCCCCTTTT 62.815 66.667 0.00 0.00 0.00 2.27
904 916 4.796495 AACAAGGCCGCCGATCCC 62.796 66.667 3.05 0.00 0.00 3.85
905 917 2.750237 AAACAAGGCCGCCGATCC 60.750 61.111 3.05 0.00 0.00 3.36
906 918 2.791927 GAAACAAGGCCGCCGATC 59.208 61.111 3.05 0.00 0.00 3.69
907 919 3.124921 CGAAACAAGGCCGCCGAT 61.125 61.111 3.05 0.00 0.00 4.18
908 920 4.612412 ACGAAACAAGGCCGCCGA 62.612 61.111 3.05 0.00 0.00 5.54
909 921 4.383602 CACGAAACAAGGCCGCCG 62.384 66.667 3.05 0.00 0.00 6.46
910 922 4.038080 CCACGAAACAAGGCCGCC 62.038 66.667 0.00 0.00 0.00 6.13
911 923 4.700365 GCCACGAAACAAGGCCGC 62.700 66.667 0.00 0.00 42.58 6.53
941 953 0.589708 CGAAACAAAAGGACCGGGTC 59.410 55.000 19.06 19.06 0.00 4.46
1001 1013 4.562082 ACGACAAATCACGATCAAACCTA 58.438 39.130 0.00 0.00 0.00 3.08
1078 1090 1.003223 GAAGGTTTGTTCGACAACGGG 60.003 52.381 0.00 0.00 37.90 5.28
1085 1097 1.305201 GGTGCAGAAGGTTTGTTCGA 58.695 50.000 0.00 0.00 0.00 3.71
1114 1126 1.226717 GAGACGCCAGCGAACTAGG 60.227 63.158 20.32 0.00 42.83 3.02
1115 1127 1.226717 GGAGACGCCAGCGAACTAG 60.227 63.158 20.32 0.00 42.83 2.57
1154 1171 1.404315 GCTCCACGGGCTATAGCATAC 60.404 57.143 25.53 13.94 44.36 2.39
1251 1268 2.034878 ACCAATCGAGCAGAGCAGATA 58.965 47.619 0.00 0.00 30.70 1.98
1301 1318 2.919229 GGAAGAATCAACGCAATTGCAG 59.081 45.455 28.77 22.28 42.21 4.41
1312 1329 2.611971 CCCAGACGAACGGAAGAATCAA 60.612 50.000 0.00 0.00 0.00 2.57
1321 1338 1.373246 TTAACGCCCAGACGAACGG 60.373 57.895 0.00 0.00 36.70 4.44
1333 1350 0.437295 ACGCAATCACGAGTTAACGC 59.563 50.000 0.00 0.00 36.70 4.84
1354 1371 2.456119 GCAACTGCTCCCGTCATCG 61.456 63.158 0.00 0.00 38.21 3.84
1426 1443 3.922850 GGAGTCAAGCTAATGCAAAAAGC 59.077 43.478 9.58 9.58 42.74 3.51
1427 1444 5.125100 TGGAGTCAAGCTAATGCAAAAAG 57.875 39.130 0.00 0.00 42.74 2.27
1428 1445 4.584325 ACTGGAGTCAAGCTAATGCAAAAA 59.416 37.500 0.00 0.00 42.74 1.94
1525 1543 2.155732 CGACAATTCCACGTGTCTTCTG 59.844 50.000 15.65 7.49 41.65 3.02
1599 1618 4.035441 GCAAACAGGTGAAACAATTGCATT 59.965 37.500 5.05 0.58 40.06 3.56
1656 1675 6.518395 CGTCGTGTTATTGAATGTAAGTTTGG 59.482 38.462 0.00 0.00 0.00 3.28
1661 1680 5.220340 GGGTCGTCGTGTTATTGAATGTAAG 60.220 44.000 0.00 0.00 0.00 2.34
1667 1686 2.036217 ACTGGGTCGTCGTGTTATTGAA 59.964 45.455 0.00 0.00 0.00 2.69
1668 1687 1.614903 ACTGGGTCGTCGTGTTATTGA 59.385 47.619 0.00 0.00 0.00 2.57
1672 1691 2.600470 AAAACTGGGTCGTCGTGTTA 57.400 45.000 0.00 0.00 0.00 2.41
1677 1696 6.657836 AAAAGATATAAAACTGGGTCGTCG 57.342 37.500 0.00 0.00 0.00 5.12
1738 1757 8.327941 TCCAATACAGAAATCTGAACAAAGAG 57.672 34.615 16.93 0.00 46.59 2.85
1739 1758 8.156820 TCTCCAATACAGAAATCTGAACAAAGA 58.843 33.333 16.93 8.99 46.59 2.52
1742 1761 6.655003 GGTCTCCAATACAGAAATCTGAACAA 59.345 38.462 16.93 0.63 46.59 2.83
1797 1816 1.006832 CCATTACAGTTTCCGCTCCG 58.993 55.000 0.00 0.00 0.00 4.63
1807 1826 7.768582 TGAATTCGTATTCATGTCCATTACAGT 59.231 33.333 12.80 0.00 43.93 3.55
1827 1846 5.125100 TGAGCTTCCAAACATGTGAATTC 57.875 39.130 0.00 0.00 0.00 2.17
1844 1863 3.645434 TCCATGGCCAATTAAATGAGCT 58.355 40.909 10.96 0.00 0.00 4.09
1850 1869 6.811634 ATTGAGATTCCATGGCCAATTAAA 57.188 33.333 10.96 2.13 0.00 1.52
1851 1870 7.068702 AGTATTGAGATTCCATGGCCAATTAA 58.931 34.615 10.96 4.23 0.00 1.40
1852 1871 6.613699 AGTATTGAGATTCCATGGCCAATTA 58.386 36.000 10.96 0.00 0.00 1.40
1896 1916 8.517878 ACATAAAGCATATGCAATTCCATAGTC 58.482 33.333 28.62 0.00 45.16 2.59
1897 1917 8.413309 ACATAAAGCATATGCAATTCCATAGT 57.587 30.769 28.62 12.14 45.16 2.12
1944 1964 3.266772 TGAACTTATGGGCATGTTCCTCT 59.733 43.478 8.34 0.51 38.29 3.69
1947 1967 4.210331 AGATGAACTTATGGGCATGTTCC 58.790 43.478 0.00 0.00 38.29 3.62
1948 1968 6.712095 TGATAGATGAACTTATGGGCATGTTC 59.288 38.462 0.00 0.00 39.18 3.18
1951 1971 7.698506 AATGATAGATGAACTTATGGGCATG 57.301 36.000 0.00 0.00 0.00 4.06
1952 1972 8.609483 AGTAATGATAGATGAACTTATGGGCAT 58.391 33.333 0.00 0.00 0.00 4.40
1982 3133 9.062524 TGTGCAATGTCTAAATAAACAGTAACT 57.937 29.630 0.00 0.00 0.00 2.24
1983 3134 9.672086 TTGTGCAATGTCTAAATAAACAGTAAC 57.328 29.630 0.00 0.00 0.00 2.50
2124 3278 3.626028 ACAGCTCGTTTTCCACAAATC 57.374 42.857 0.00 0.00 0.00 2.17
2126 3280 3.506810 CAAACAGCTCGTTTTCCACAAA 58.493 40.909 10.38 0.00 45.79 2.83
2230 3384 2.289002 GCCTTCTGCAGAAACCATATCG 59.711 50.000 28.16 14.55 40.77 2.92
2333 3487 6.430925 GCATTATATTGTTATCCTGAGGTGCA 59.569 38.462 0.00 0.00 0.00 4.57
2334 3488 6.656693 AGCATTATATTGTTATCCTGAGGTGC 59.343 38.462 0.00 0.00 0.00 5.01
2388 3542 5.886960 AAATATAGAATCATGAAGCCGGC 57.113 39.130 21.89 21.89 0.00 6.13
2437 3592 9.201989 ACAACATAAGGAGATGATACTTCAGTA 57.798 33.333 0.00 0.00 34.73 2.74
2466 3621 5.928976 TCATCAGGACTGAAAAACAAGAGA 58.071 37.500 6.06 0.00 43.58 3.10
2467 3622 6.814506 ATCATCAGGACTGAAAAACAAGAG 57.185 37.500 6.06 0.00 43.58 2.85
2539 3715 7.054124 GTGATTATTCTCCCAACCACAATCTA 58.946 38.462 0.00 0.00 0.00 1.98
2546 3722 5.640147 AGTTTGTGATTATTCTCCCAACCA 58.360 37.500 0.00 0.00 0.00 3.67
2634 3810 9.784531 TCAACTGAGATATCAAGAAAGAAAACT 57.215 29.630 5.32 0.00 0.00 2.66
2653 3829 9.444600 GGTTTCCTAGTTACATAAATCAACTGA 57.555 33.333 0.00 0.00 34.48 3.41
2654 3830 9.226606 TGGTTTCCTAGTTACATAAATCAACTG 57.773 33.333 0.00 0.00 34.48 3.16
2655 3831 9.975218 ATGGTTTCCTAGTTACATAAATCAACT 57.025 29.630 0.00 0.00 36.51 3.16
2663 3839 9.895138 GGAAGTAAATGGTTTCCTAGTTACATA 57.105 33.333 0.00 0.00 37.86 2.29
2664 3840 7.832685 GGGAAGTAAATGGTTTCCTAGTTACAT 59.167 37.037 2.87 0.00 40.17 2.29
2665 3841 7.170277 GGGAAGTAAATGGTTTCCTAGTTACA 58.830 38.462 2.87 0.00 40.17 2.41
2666 3842 6.314648 CGGGAAGTAAATGGTTTCCTAGTTAC 59.685 42.308 2.87 0.00 40.17 2.50
2667 3843 6.013466 ACGGGAAGTAAATGGTTTCCTAGTTA 60.013 38.462 2.87 0.00 40.17 2.24
2668 3844 5.221986 ACGGGAAGTAAATGGTTTCCTAGTT 60.222 40.000 2.87 0.00 40.17 2.24
2669 3845 4.287845 ACGGGAAGTAAATGGTTTCCTAGT 59.712 41.667 2.87 1.71 40.17 2.57
2670 3846 4.634443 CACGGGAAGTAAATGGTTTCCTAG 59.366 45.833 2.87 0.00 40.17 3.02
2671 3847 4.581868 CACGGGAAGTAAATGGTTTCCTA 58.418 43.478 2.87 0.00 40.17 2.94
2672 3848 3.418047 CACGGGAAGTAAATGGTTTCCT 58.582 45.455 2.87 0.00 40.17 3.36
2673 3849 2.094906 GCACGGGAAGTAAATGGTTTCC 60.095 50.000 0.00 0.00 39.69 3.13
2674 3850 2.094906 GGCACGGGAAGTAAATGGTTTC 60.095 50.000 0.00 0.00 0.00 2.78
2675 3851 1.890489 GGCACGGGAAGTAAATGGTTT 59.110 47.619 0.00 0.00 0.00 3.27
2676 3852 1.202952 TGGCACGGGAAGTAAATGGTT 60.203 47.619 0.00 0.00 0.00 3.67
2677 3853 0.402504 TGGCACGGGAAGTAAATGGT 59.597 50.000 0.00 0.00 0.00 3.55
2678 3854 1.540267 TTGGCACGGGAAGTAAATGG 58.460 50.000 0.00 0.00 0.00 3.16
2679 3855 4.638421 TCTTATTGGCACGGGAAGTAAATG 59.362 41.667 0.00 0.00 0.00 2.32
2680 3856 4.850680 TCTTATTGGCACGGGAAGTAAAT 58.149 39.130 0.00 0.00 0.00 1.40
2681 3857 4.289238 TCTTATTGGCACGGGAAGTAAA 57.711 40.909 0.00 0.00 0.00 2.01
2682 3858 3.985019 TCTTATTGGCACGGGAAGTAA 57.015 42.857 0.00 0.00 0.00 2.24
2683 3859 3.602483 GTTCTTATTGGCACGGGAAGTA 58.398 45.455 0.00 0.00 0.00 2.24
2684 3860 2.433436 GTTCTTATTGGCACGGGAAGT 58.567 47.619 0.00 0.00 0.00 3.01
2685 3861 1.743394 GGTTCTTATTGGCACGGGAAG 59.257 52.381 0.00 0.00 0.00 3.46
2686 3862 1.353022 AGGTTCTTATTGGCACGGGAA 59.647 47.619 0.00 0.00 0.00 3.97
2687 3863 0.988832 AGGTTCTTATTGGCACGGGA 59.011 50.000 0.00 0.00 0.00 5.14
2688 3864 1.834188 AAGGTTCTTATTGGCACGGG 58.166 50.000 0.00 0.00 0.00 5.28
2689 3865 2.681344 GGTAAGGTTCTTATTGGCACGG 59.319 50.000 0.00 0.00 0.00 4.94
2690 3866 3.340034 TGGTAAGGTTCTTATTGGCACG 58.660 45.455 0.00 0.00 0.00 5.34
2749 3956 1.707989 TGGGTTCTTATTGGCACAGGA 59.292 47.619 0.00 0.00 42.39 3.86
2785 3993 5.709164 AGCAGCATGAAGAAATAAGTGAAGT 59.291 36.000 0.00 0.00 39.69 3.01
2822 4030 3.256383 TGCAGATGAACCAGATGTTTTGG 59.744 43.478 0.00 0.00 37.29 3.28
2847 4055 7.395489 AGGCTGAACATCAACAAGAGAAAATAT 59.605 33.333 0.00 0.00 0.00 1.28
2973 4181 4.020928 TGAAATGGCATTGCTTCAGTGAAT 60.021 37.500 18.78 0.00 0.00 2.57
3010 4218 6.493189 AATGTTTACACCCCAAACTTTCAT 57.507 33.333 0.00 0.00 36.92 2.57
3012 4220 6.342111 TCAAATGTTTACACCCCAAACTTTC 58.658 36.000 0.00 0.00 36.92 2.62
3014 4222 5.941555 TCAAATGTTTACACCCCAAACTT 57.058 34.783 0.00 0.00 36.92 2.66
3135 4344 7.462571 AGGAACATGAATAACAAACCCTAAC 57.537 36.000 0.00 0.00 0.00 2.34
3151 4360 3.305608 GCAAGGACCAGAAAAGGAACATG 60.306 47.826 0.00 0.00 0.00 3.21
3243 4452 3.427573 TGACTAGATGACTCAACCCGAA 58.572 45.455 0.00 0.00 0.00 4.30
3246 4455 8.354711 TCATATATGACTAGATGACTCAACCC 57.645 38.462 11.49 0.00 32.11 4.11
3300 4509 9.921637 ACATGAAACCAATACATATTTCGTTTT 57.078 25.926 0.00 0.00 34.46 2.43
3472 4681 7.127955 AGGAGATAACCCACAAGAATCAGTATT 59.872 37.037 0.00 0.00 0.00 1.89
3474 4683 5.964477 AGGAGATAACCCACAAGAATCAGTA 59.036 40.000 0.00 0.00 0.00 2.74
3475 4684 4.785376 AGGAGATAACCCACAAGAATCAGT 59.215 41.667 0.00 0.00 0.00 3.41
3476 4685 5.365021 AGGAGATAACCCACAAGAATCAG 57.635 43.478 0.00 0.00 0.00 2.90
3477 4686 5.488919 AGAAGGAGATAACCCACAAGAATCA 59.511 40.000 0.00 0.00 0.00 2.57
3478 4687 5.995446 AGAAGGAGATAACCCACAAGAATC 58.005 41.667 0.00 0.00 0.00 2.52
3479 4688 6.394345 AAGAAGGAGATAACCCACAAGAAT 57.606 37.500 0.00 0.00 0.00 2.40
3480 4689 5.843019 AAGAAGGAGATAACCCACAAGAA 57.157 39.130 0.00 0.00 0.00 2.52
3482 4691 7.168905 ACTTAAAGAAGGAGATAACCCACAAG 58.831 38.462 0.00 0.00 36.95 3.16
3483 4692 7.017254 AGACTTAAAGAAGGAGATAACCCACAA 59.983 37.037 0.00 0.00 36.95 3.33
3511 4720 8.585881 TGCTACATCAATACTTTACTAGGATCC 58.414 37.037 2.48 2.48 0.00 3.36
3516 4725 8.414003 TGGAGTGCTACATCAATACTTTACTAG 58.586 37.037 0.00 0.00 0.00 2.57
3519 4728 7.843490 TTGGAGTGCTACATCAATACTTTAC 57.157 36.000 0.00 0.00 0.00 2.01
3520 4729 8.100791 ACTTTGGAGTGCTACATCAATACTTTA 58.899 33.333 0.00 0.00 33.99 1.85
3552 4761 9.177608 CATTTCATATGTTCTCTTGGAAACCTA 57.822 33.333 1.90 0.00 35.51 3.08
3553 4762 7.363268 GCATTTCATATGTTCTCTTGGAAACCT 60.363 37.037 1.90 0.00 35.51 3.50
3554 4763 6.753744 GCATTTCATATGTTCTCTTGGAAACC 59.246 38.462 1.90 0.00 35.51 3.27
3555 4764 6.470235 CGCATTTCATATGTTCTCTTGGAAAC 59.530 38.462 1.90 0.00 35.51 2.78
3556 4765 6.374053 TCGCATTTCATATGTTCTCTTGGAAA 59.626 34.615 1.90 0.00 35.51 3.13
3557 4766 5.879777 TCGCATTTCATATGTTCTCTTGGAA 59.120 36.000 1.90 0.00 0.00 3.53
3558 4767 5.427378 TCGCATTTCATATGTTCTCTTGGA 58.573 37.500 1.90 0.00 0.00 3.53
3559 4768 5.739752 TCGCATTTCATATGTTCTCTTGG 57.260 39.130 1.90 0.00 0.00 3.61
3560 4769 6.779117 AGTTCGCATTTCATATGTTCTCTTG 58.221 36.000 1.90 0.00 0.00 3.02
3655 4864 5.312895 TGAAAGTGATGCTAGCTTTTGGTA 58.687 37.500 17.23 0.00 33.22 3.25
3750 4959 5.733620 ACCACAATTGAAGATTTCAGCAT 57.266 34.783 13.59 0.00 41.38 3.79
3783 4992 5.527214 CAGTGTTCTGAAACCACTACAATGA 59.473 40.000 11.80 0.00 43.76 2.57
3819 5028 9.236006 AGAAGCATTAGTTGAATCTGTACAATT 57.764 29.630 0.00 0.06 0.00 2.32
3835 5044 8.807667 AATTTGTCAACTCAAAGAAGCATTAG 57.192 30.769 0.00 0.00 40.00 1.73
3855 5064 9.264719 ACATAAGAAAAGAGAAAGGCAAATTTG 57.735 29.630 14.03 14.03 0.00 2.32
4003 5212 7.615582 TCTTGCAACCAGAGAATAATTACAG 57.384 36.000 0.00 0.00 0.00 2.74
4018 5227 3.128764 GCCACTATAAGGTTCTTGCAACC 59.871 47.826 0.00 0.00 40.58 3.77
4045 5254 2.919666 AATGAATGGGAGCGAAAACG 57.080 45.000 0.00 0.00 0.00 3.60
4076 5285 7.642071 AAACTGCTTGCAGTAAAACAATATG 57.358 32.000 25.69 0.00 34.56 1.78
4281 5490 0.754957 TGTTGGGTGGGTTTGCTCAG 60.755 55.000 0.00 0.00 0.00 3.35
4282 5491 0.324738 TTGTTGGGTGGGTTTGCTCA 60.325 50.000 0.00 0.00 0.00 4.26
4286 5495 1.715785 ATCCTTGTTGGGTGGGTTTG 58.284 50.000 0.00 0.00 36.20 2.93
4383 5592 4.446413 CCCTACACACCGGACCGC 62.446 72.222 9.46 0.00 0.00 5.68
4425 5634 5.642063 CGGGCTAAATTTCTGAGTAGTTTCA 59.358 40.000 0.00 0.00 0.00 2.69
4438 5647 7.384932 GCTAATTAATGATTGCGGGCTAAATTT 59.615 33.333 0.00 0.00 0.00 1.82
4478 5688 1.685355 GAAGAGAGAGGGCCAGCTCC 61.685 65.000 19.08 12.42 0.00 4.70
4487 5697 5.711698 AGTTATTCTAGGGGAAGAGAGAGG 58.288 45.833 0.00 0.00 37.36 3.69
4592 5802 0.972983 CCAGGAAGAGGAGGCGAGAA 60.973 60.000 0.00 0.00 0.00 2.87
4653 5867 1.605753 ATACGTAGAGGATGCGAGCA 58.394 50.000 0.08 0.00 39.69 4.26
4781 6017 4.202440 ACAAGGCATCTCCAATCTCCATAG 60.202 45.833 0.00 0.00 37.29 2.23
4801 6037 0.110486 GCTTGACCCTCCTCCAACAA 59.890 55.000 0.00 0.00 0.00 2.83
4862 6098 1.228367 CCCTCCACCATGGCATAGC 60.228 63.158 13.04 0.00 37.47 2.97
4863 6099 1.228367 GCCCTCCACCATGGCATAG 60.228 63.158 13.04 6.24 44.70 2.23
4864 6100 2.926250 GCCCTCCACCATGGCATA 59.074 61.111 13.04 0.00 44.70 3.14
4867 6103 1.228367 CATAGCCCTCCACCATGGC 60.228 63.158 13.04 0.00 45.70 4.40
4868 6104 1.228367 GCATAGCCCTCCACCATGG 60.228 63.158 11.19 11.19 39.43 3.66
4869 6105 1.228367 GGCATAGCCCTCCACCATG 60.228 63.158 0.00 0.00 44.06 3.66
4870 6106 3.255032 GGCATAGCCCTCCACCAT 58.745 61.111 0.00 0.00 44.06 3.55
4922 6158 6.040842 AGGTTATGTATGCATGAAAATGGGTC 59.959 38.462 10.16 0.00 36.58 4.46
4964 6200 1.197721 GAGGATGTGAAGTTTGTGCCG 59.802 52.381 0.00 0.00 0.00 5.69
5104 6664 3.622362 GTCGTTGCGACGTGTGCA 61.622 61.111 25.12 7.91 46.56 4.57
5114 6674 0.657368 CAAAGGACTTGCGTCGTTGC 60.657 55.000 0.00 0.00 44.78 4.17
5121 6681 0.878523 TCGGTGTCAAAGGACTTGCG 60.879 55.000 0.00 0.00 44.61 4.85
5136 6696 0.760567 TATGGATGCAGGCTCTCGGT 60.761 55.000 0.00 0.00 0.00 4.69
5179 6739 1.510383 GCAACAAGTGTGGTGTGCA 59.490 52.632 1.85 0.00 44.95 4.57
5208 6768 7.337689 TCTTCTACATGTGAAGCTTGCATATTT 59.662 33.333 22.67 2.03 40.31 1.40
5216 6776 4.020751 TGCTCTCTTCTACATGTGAAGCTT 60.021 41.667 22.67 0.00 40.31 3.74
5220 6780 3.367395 CCGTGCTCTCTTCTACATGTGAA 60.367 47.826 9.11 9.30 0.00 3.18
5275 6997 0.107214 GCCCGGATTGAAGTCATCCA 60.107 55.000 0.73 0.00 34.22 3.41
5289 7011 2.613506 GGACGAGTTGTTTGCCCGG 61.614 63.158 0.00 0.00 0.00 5.73
5320 7042 4.135747 TGTTGGCTGATTATGATCGTCA 57.864 40.909 0.00 0.00 34.91 4.35
5351 7073 1.270968 CGATGTCATTGAGCGTCGC 59.729 57.895 9.80 9.80 37.33 5.19
5368 7090 3.039202 GCCAAGGTTGATGACGCCG 62.039 63.158 0.00 0.00 0.00 6.46
5372 7094 0.244721 GCCAAGCCAAGGTTGATGAC 59.755 55.000 8.03 0.00 42.72 3.06
5399 7124 0.981183 AAGAGGTTGGCCATGTCGTA 59.019 50.000 6.09 0.00 37.19 3.43
5425 7150 0.533032 GGAAGAGGAGGTCCAAGTCG 59.467 60.000 0.00 0.00 38.89 4.18
5527 7252 1.221566 CATGCCGTGGTGGAGATGA 59.778 57.895 0.00 0.00 42.00 2.92
5557 7282 2.847234 AGGGTCAAGCCGTGGTCA 60.847 61.111 0.00 0.00 38.44 4.02
5579 7304 2.158957 GGAGATTGGAGATGCCGTGTTA 60.159 50.000 0.00 0.00 40.66 2.41
5639 7368 2.093341 GCCAGGTGATGCAAAATGGATT 60.093 45.455 10.04 0.00 0.00 3.01
5657 7386 2.308722 GGAGGGATGGACTTGGCCA 61.309 63.158 0.00 0.00 43.23 5.36
5675 7404 0.179000 CGGTGATGGAAGGAGAAGGG 59.821 60.000 0.00 0.00 0.00 3.95
5849 7603 1.611936 GGCTCACTCAGGTCCTTTTCC 60.612 57.143 0.00 0.00 0.00 3.13
5850 7604 1.611936 GGGCTCACTCAGGTCCTTTTC 60.612 57.143 0.00 0.00 0.00 2.29
5859 7613 1.786937 ATACTCCTGGGCTCACTCAG 58.213 55.000 0.00 0.00 0.00 3.35
5860 7614 2.111384 GAATACTCCTGGGCTCACTCA 58.889 52.381 0.00 0.00 0.00 3.41
5866 7620 1.132689 CCCCTAGAATACTCCTGGGCT 60.133 57.143 0.00 0.00 33.26 5.19
5980 7735 3.066190 TCCGGTGTGTAGGGCTCG 61.066 66.667 0.00 0.00 0.00 5.03
6020 7775 6.833041 TGAGTGTACTGTTCCCTAAATCAAA 58.167 36.000 0.00 0.00 0.00 2.69
6041 7796 7.886629 TTGATTTCTGGATTATTTCCCTGAG 57.113 36.000 0.00 0.00 44.77 3.35
6081 7837 3.054655 GGGAATGGGTACAGAAGTTAGCA 60.055 47.826 0.00 0.00 0.00 3.49
6084 7840 4.172807 ACAGGGAATGGGTACAGAAGTTA 58.827 43.478 0.00 0.00 0.00 2.24
6085 7841 2.986728 ACAGGGAATGGGTACAGAAGTT 59.013 45.455 0.00 0.00 0.00 2.66
6086 7842 2.632537 ACAGGGAATGGGTACAGAAGT 58.367 47.619 0.00 0.00 0.00 3.01
6087 7843 3.009033 TCAACAGGGAATGGGTACAGAAG 59.991 47.826 0.00 0.00 0.00 2.85
6088 7844 2.983192 TCAACAGGGAATGGGTACAGAA 59.017 45.455 0.00 0.00 0.00 3.02
6089 7845 2.304761 GTCAACAGGGAATGGGTACAGA 59.695 50.000 0.00 0.00 0.00 3.41
6090 7846 2.711542 GTCAACAGGGAATGGGTACAG 58.288 52.381 0.00 0.00 0.00 2.74
6091 7847 1.002659 CGTCAACAGGGAATGGGTACA 59.997 52.381 0.00 0.00 0.00 2.90
6092 7848 1.002773 ACGTCAACAGGGAATGGGTAC 59.997 52.381 0.00 0.00 0.00 3.34
6173 7929 3.853355 ACAGCAAGCCTATAAGCAGAT 57.147 42.857 0.00 0.00 34.23 2.90
6211 7967 8.717821 TCTTTTTCAGATACTTGTATTTCACCG 58.282 33.333 0.00 0.00 0.00 4.94
6372 8131 9.019656 AGATACACAACAACTTTGCCAATATAA 57.980 29.630 0.00 0.00 0.00 0.98
6517 8276 0.886490 AGCTTTGCTCCACAACCTCG 60.886 55.000 0.00 0.00 38.23 4.63
6523 8282 0.535780 CAGTCCAGCTTTGCTCCACA 60.536 55.000 0.00 0.00 36.40 4.17
6799 8560 4.222810 TGGAAGAACTTATGCTCAGCAGTA 59.777 41.667 5.13 0.00 43.65 2.74
6820 8581 3.425659 AGCTAAAAAGAGGCTTCCTTGG 58.574 45.455 0.00 0.00 31.76 3.61
6852 8613 0.173935 CTGACTGAGGCTCTGAGCAG 59.826 60.000 28.95 23.94 44.75 4.24
6874 8635 6.088016 TGTTTGGAAGATCAAAGGATGTTG 57.912 37.500 0.00 0.00 37.31 3.33
6881 8642 4.524316 TGCCATGTTTGGAAGATCAAAG 57.476 40.909 0.00 0.00 46.92 2.77
6948 8709 7.974501 TCTCAAGAAATAAACTCTAGTAAGGCG 59.025 37.037 0.00 0.00 0.00 5.52
6981 8742 3.621715 CGCTATTTTCTCAACACCTACCC 59.378 47.826 0.00 0.00 0.00 3.69
7049 8810 2.635915 TCAAGCTCGGGTTCTTAAGGAA 59.364 45.455 1.85 0.00 0.00 3.36
7051 8812 2.622436 CTCAAGCTCGGGTTCTTAAGG 58.378 52.381 1.85 0.00 0.00 2.69
7116 8877 0.597568 TTCAATTGCGTGCCTCCTTG 59.402 50.000 0.00 0.00 0.00 3.61
7126 8887 4.944962 TCATTCCAGTACTTCAATTGCG 57.055 40.909 0.00 0.00 0.00 4.85
7127 8888 6.259550 ACTTCATTCCAGTACTTCAATTGC 57.740 37.500 0.00 0.00 0.00 3.56
7168 8929 1.611673 CCGAAGGCAGGTCACAAGAAT 60.612 52.381 0.00 0.00 46.14 2.40
7179 8940 8.113969 ATTCGAAATGAATTACCCGAAGGCAG 62.114 42.308 0.00 0.00 46.68 4.85
7191 8952 8.450578 TCTGCCTACATTATTCGAAATGAATT 57.549 30.769 15.09 0.00 45.06 2.17
7193 8954 7.047891 ACTCTGCCTACATTATTCGAAATGAA 58.952 34.615 15.09 5.13 38.84 2.57
7204 8965 2.029623 GGTCCGACTCTGCCTACATTA 58.970 52.381 0.00 0.00 0.00 1.90
7219 8980 2.125912 CGAACTGGCTCTGGTCCG 60.126 66.667 0.00 0.00 0.00 4.79
7311 9072 5.880054 TTTAGCAAGAGTATGGCAACTTC 57.120 39.130 0.00 0.00 37.61 3.01
7346 9107 5.015515 TGGGCAAATTATGTTGTCATGAGA 58.984 37.500 0.00 0.00 34.70 3.27
7379 9140 6.526325 CGGATTTTTAAGCATGACAAATCGAA 59.474 34.615 0.00 0.00 35.53 3.71
7380 9141 6.027131 CGGATTTTTAAGCATGACAAATCGA 58.973 36.000 0.00 0.00 35.53 3.59
7381 9142 6.021468 GTCGGATTTTTAAGCATGACAAATCG 60.021 38.462 0.00 0.57 35.53 3.34
7382 9143 6.021468 CGTCGGATTTTTAAGCATGACAAATC 60.021 38.462 0.00 2.33 34.44 2.17
7383 9144 5.799936 CGTCGGATTTTTAAGCATGACAAAT 59.200 36.000 0.00 0.00 0.00 2.32
7384 9145 5.150683 CGTCGGATTTTTAAGCATGACAAA 58.849 37.500 0.00 0.00 0.00 2.83
7385 9146 4.214545 ACGTCGGATTTTTAAGCATGACAA 59.785 37.500 0.00 0.00 0.00 3.18
7386 9147 3.749088 ACGTCGGATTTTTAAGCATGACA 59.251 39.130 0.00 0.00 0.00 3.58
7387 9148 4.336532 ACGTCGGATTTTTAAGCATGAC 57.663 40.909 0.00 0.00 0.00 3.06
7388 9149 4.434989 CGAACGTCGGATTTTTAAGCATGA 60.435 41.667 0.00 0.00 36.00 3.07
7389 9150 3.778718 CGAACGTCGGATTTTTAAGCATG 59.221 43.478 0.00 0.00 36.00 4.06
7390 9151 3.680937 TCGAACGTCGGATTTTTAAGCAT 59.319 39.130 0.00 0.00 40.88 3.79
7391 9152 3.058450 TCGAACGTCGGATTTTTAAGCA 58.942 40.909 0.00 0.00 40.88 3.91
7413 9174 2.356382 CCACAAGTTGGTTCGCTACAAA 59.644 45.455 7.96 0.00 41.10 2.83
7429 9190 4.038042 TGAATTGGCGTTTGATAACCACAA 59.962 37.500 0.00 0.00 33.63 3.33
7450 9211 9.859427 GAATTGATCTTGTTTGGATTTGTATGA 57.141 29.630 0.00 0.00 0.00 2.15
7557 9318 6.713792 TTTTGTTTCCGTTTCTTTTCTTGG 57.286 33.333 0.00 0.00 0.00 3.61
7561 9322 6.422701 CCCCTATTTTGTTTCCGTTTCTTTTC 59.577 38.462 0.00 0.00 0.00 2.29
7586 9347 3.003480 GAGTACTCATGTGGAAGTTGGC 58.997 50.000 18.20 0.00 0.00 4.52
7660 9421 9.463443 GGCATGCTATTTATTAGTTTACTTTGG 57.537 33.333 18.92 0.00 0.00 3.28
7690 9451 2.023404 GGGAAATTTCCTACCCCATGGT 60.023 50.000 31.23 0.00 46.72 3.55
7698 9459 5.358090 CCTAACGAGAGGGAAATTTCCTAC 58.642 45.833 31.23 24.47 46.72 3.18
7712 9473 3.555586 CGGGAAAGAAAACCCTAACGAGA 60.556 47.826 0.00 0.00 43.57 4.04
7717 9478 2.510613 CAGCGGGAAAGAAAACCCTAA 58.489 47.619 0.00 0.00 43.57 2.69
7718 9479 1.884928 GCAGCGGGAAAGAAAACCCTA 60.885 52.381 0.00 0.00 43.57 3.53
7719 9480 1.179174 GCAGCGGGAAAGAAAACCCT 61.179 55.000 0.00 0.00 43.57 4.34
7720 9481 1.289066 GCAGCGGGAAAGAAAACCC 59.711 57.895 0.00 0.00 42.43 4.11
7721 9482 1.289066 GGCAGCGGGAAAGAAAACC 59.711 57.895 0.00 0.00 0.00 3.27
7722 9483 1.289066 GGGCAGCGGGAAAGAAAAC 59.711 57.895 0.00 0.00 0.00 2.43
7723 9484 1.906333 GGGGCAGCGGGAAAGAAAA 60.906 57.895 0.00 0.00 0.00 2.29
7724 9485 2.282887 GGGGCAGCGGGAAAGAAA 60.283 61.111 0.00 0.00 0.00 2.52
7725 9486 4.360405 GGGGGCAGCGGGAAAGAA 62.360 66.667 0.00 0.00 0.00 2.52
7735 9496 4.722700 CCAGGTCAACGGGGGCAG 62.723 72.222 0.00 0.00 0.00 4.85
7737 9498 4.410400 CTCCAGGTCAACGGGGGC 62.410 72.222 0.00 0.00 34.87 5.80
7738 9499 2.606519 TCTCCAGGTCAACGGGGG 60.607 66.667 0.00 0.00 36.05 5.40
7739 9500 2.663196 GTCTCCAGGTCAACGGGG 59.337 66.667 0.00 0.00 34.87 5.73
7740 9501 1.481056 AAGGTCTCCAGGTCAACGGG 61.481 60.000 0.00 0.00 35.52 5.28
7741 9502 0.320771 CAAGGTCTCCAGGTCAACGG 60.321 60.000 0.00 0.00 0.00 4.44
7742 9503 0.393077 ACAAGGTCTCCAGGTCAACG 59.607 55.000 0.00 0.00 0.00 4.10
7743 9504 1.270893 GGACAAGGTCTCCAGGTCAAC 60.271 57.143 10.35 0.00 32.83 3.18
7744 9505 1.056660 GGACAAGGTCTCCAGGTCAA 58.943 55.000 10.35 0.00 32.83 3.18
7745 9506 0.836400 GGGACAAGGTCTCCAGGTCA 60.836 60.000 10.35 0.00 32.83 4.02
7746 9507 0.836400 TGGGACAAGGTCTCCAGGTC 60.836 60.000 0.00 0.00 30.90 3.85
7747 9508 1.128188 GTGGGACAAGGTCTCCAGGT 61.128 60.000 6.77 0.00 44.16 4.00
7748 9509 1.679898 GTGGGACAAGGTCTCCAGG 59.320 63.158 6.77 0.00 44.16 4.45
7749 9510 1.127567 TGGTGGGACAAGGTCTCCAG 61.128 60.000 6.77 0.00 44.16 3.86
7770 9531 3.612004 CGAGAGAAACTACCAGCGTTCTT 60.612 47.826 0.00 0.00 0.00 2.52
7778 9539 0.895530 CAGCCCGAGAGAAACTACCA 59.104 55.000 0.00 0.00 0.00 3.25
7793 9554 3.496675 GGTCACCCCTTAATCAGCC 57.503 57.895 0.00 0.00 0.00 4.85
7827 9588 0.773644 ACCAACATGACTCCAAGGCT 59.226 50.000 0.00 0.00 0.00 4.58
7838 9599 2.341257 CCACGAGAGAGAACCAACATG 58.659 52.381 0.00 0.00 0.00 3.21
7864 9625 4.450082 AAACTTTCTGAAACCACACACC 57.550 40.909 0.00 0.00 0.00 4.16
7878 9647 5.005012 GCAACAAACGGGAGTAAAAACTTTC 59.995 40.000 0.00 0.00 46.69 2.62
7888 9657 3.926657 GCCCTAGCAACAAACGGGAGT 62.927 57.143 0.00 0.00 42.46 3.85
7896 9665 3.123943 TTGCAAGCCCTAGCAACAA 57.876 47.368 0.00 0.00 44.98 2.83
7911 9680 3.062042 CAAAAGCCATCACTTCCTTTGC 58.938 45.455 0.00 0.00 0.00 3.68
7930 9699 1.618343 TCTCACGTGAGCTTGATCCAA 59.382 47.619 35.48 16.03 41.80 3.53
7951 9720 4.041321 TCATCATCTTCTCCACATCATCCC 59.959 45.833 0.00 0.00 0.00 3.85
7959 9728 6.259608 CCTAACATGTTCATCATCTTCTCCAC 59.740 42.308 15.85 0.00 34.09 4.02
7965 9734 5.121380 AGCCCTAACATGTTCATCATCTT 57.879 39.130 15.85 0.00 34.09 2.40
7967 9736 5.591877 AGAAAGCCCTAACATGTTCATCATC 59.408 40.000 15.85 6.50 34.09 2.92
7992 9761 4.478206 TCACATCATCAAGGTCTTCCTC 57.522 45.455 0.00 0.00 44.35 3.71
7998 9767 8.592105 TTTTCAAAAATCACATCATCAAGGTC 57.408 30.769 0.00 0.00 0.00 3.85
8033 9802 4.559862 ACGAATTGAATCAAGAGGAGGT 57.440 40.909 1.10 0.00 0.00 3.85
8063 9832 5.514169 TCACCATGCAAAACCCTAATGATA 58.486 37.500 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.