Multiple sequence alignment - TraesCS1B01G140000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G140000 chr1B 100.000 2639 0 0 1 2639 185078161 185075523 0.000000e+00 4874.0
1 TraesCS1B01G140000 chr1B 94.526 274 13 2 1994 2266 397140687 397140959 3.140000e-114 422.0
2 TraesCS1B01G140000 chr1B 93.773 273 15 2 1999 2269 520722230 520721958 2.450000e-110 409.0
3 TraesCS1B01G140000 chr1B 81.818 121 20 2 390 509 594003169 594003288 1.670000e-17 100.0
4 TraesCS1B01G140000 chr1B 77.931 145 27 5 1852 1991 94323395 94323251 4.680000e-13 86.1
5 TraesCS1B01G140000 chr1B 96.875 32 1 0 1831 1862 360806228 360806197 1.000000e-03 54.7
6 TraesCS1B01G140000 chr1A 93.383 1330 50 23 641 1961 133161113 133159813 0.000000e+00 1934.0
7 TraesCS1B01G140000 chr1A 85.575 409 44 12 138 539 133161516 133161116 5.260000e-112 414.0
8 TraesCS1B01G140000 chr1D 93.205 1251 46 23 614 1859 121318318 121317102 0.000000e+00 1803.0
9 TraesCS1B01G140000 chr1D 86.519 497 59 3 108 600 121394837 121394345 8.310000e-150 540.0
10 TraesCS1B01G140000 chr1D 87.399 373 43 2 2267 2639 121316868 121316500 2.430000e-115 425.0
11 TraesCS1B01G140000 chr1D 84.524 84 11 2 1909 1991 58866014 58865932 6.050000e-12 82.4
12 TraesCS1B01G140000 chr3A 84.564 447 51 12 1831 2264 466040970 466040529 6.750000e-116 427.0
13 TraesCS1B01G140000 chr3A 92.226 283 20 2 1994 2274 717202287 717202569 1.470000e-107 399.0
14 TraesCS1B01G140000 chr3A 78.804 184 19 10 1831 1996 644624090 644623909 3.590000e-19 106.0
15 TraesCS1B01G140000 chr3A 76.642 137 27 5 1852 1983 514166562 514166426 1.310000e-08 71.3
16 TraesCS1B01G140000 chr7D 93.818 275 17 0 1998 2272 415928333 415928607 5.260000e-112 414.0
17 TraesCS1B01G140000 chr3B 93.750 272 14 3 2000 2269 580627274 580627544 3.160000e-109 405.0
18 TraesCS1B01G140000 chr6D 93.985 266 16 0 1998 2263 434030532 434030797 1.140000e-108 403.0
19 TraesCS1B01G140000 chr2B 92.857 280 17 3 1986 2263 661805239 661805517 1.140000e-108 403.0
20 TraesCS1B01G140000 chr2B 79.264 299 61 1 2322 2619 730179267 730178969 9.570000e-50 207.0
21 TraesCS1B01G140000 chr2B 78.738 301 61 3 2322 2620 250063349 250063648 5.760000e-47 198.0
22 TraesCS1B01G140000 chr2B 77.966 236 46 5 347 578 680409854 680409621 2.740000e-30 143.0
23 TraesCS1B01G140000 chr2B 96.970 33 1 0 1831 1863 190237864 190237896 3.670000e-04 56.5
24 TraesCS1B01G140000 chr7B 92.419 277 19 2 1987 2263 456510575 456510849 6.850000e-106 394.0
25 TraesCS1B01G140000 chr6B 79.139 302 57 6 2320 2619 21064038 21063741 1.240000e-48 204.0
26 TraesCS1B01G140000 chr6B 78.165 316 62 7 2307 2619 657093013 657093324 7.450000e-46 195.0
27 TraesCS1B01G140000 chr6B 73.832 321 60 15 2307 2626 705176726 705176429 3.590000e-19 106.0
28 TraesCS1B01G140000 chr6B 100.000 28 0 0 1831 1858 56437984 56437957 5.000000e-03 52.8
29 TraesCS1B01G140000 chr5D 79.139 302 57 6 2320 2619 357501090 357500793 1.240000e-48 204.0
30 TraesCS1B01G140000 chr5D 78.235 170 25 8 1820 1979 458874507 458874674 6.010000e-17 99.0
31 TraesCS1B01G140000 chr4A 83.408 223 34 3 334 554 737235906 737236127 1.240000e-48 204.0
32 TraesCS1B01G140000 chr4A 81.169 154 23 4 334 484 12672046 12671896 4.610000e-23 119.0
33 TraesCS1B01G140000 chr2A 79.139 302 57 6 2320 2619 722206251 722206548 1.240000e-48 204.0
34 TraesCS1B01G140000 chr2A 82.063 223 35 5 334 554 402688283 402688502 4.490000e-43 185.0
35 TraesCS1B01G140000 chr2A 80.093 216 40 3 2307 2520 14701690 14701476 9.780000e-35 158.0
36 TraesCS1B01G140000 chr4B 78.808 302 58 6 2320 2619 39311808 39312105 5.760000e-47 198.0
37 TraesCS1B01G140000 chr4B 83.200 125 15 6 319 438 661675299 661675422 2.780000e-20 110.0
38 TraesCS1B01G140000 chr2D 78.502 307 62 4 2315 2619 106124481 106124785 5.760000e-47 198.0
39 TraesCS1B01G140000 chr2D 79.545 220 39 5 347 562 567643149 567642932 4.550000e-33 152.0
40 TraesCS1B01G140000 chr2D 79.825 114 18 4 1852 1964 186867682 186867573 7.830000e-11 78.7
41 TraesCS1B01G140000 chr2D 77.966 118 21 5 1870 1985 134302348 134302462 4.710000e-08 69.4
42 TraesCS1B01G140000 chr3D 80.882 204 35 4 376 577 427084357 427084558 9.780000e-35 158.0
43 TraesCS1B01G140000 chr3D 81.429 140 19 7 1867 2002 592962487 592962623 9.990000e-20 108.0
44 TraesCS1B01G140000 chr3D 76.301 173 25 9 1830 1988 41695770 41695600 7.830000e-11 78.7
45 TraesCS1B01G140000 chr3D 100.000 28 0 0 1937 1964 525641951 525641924 5.000000e-03 52.8
46 TraesCS1B01G140000 chr5B 79.433 141 20 6 1831 1963 562794425 562794564 1.010000e-14 91.6
47 TraesCS1B01G140000 chr5A 77.778 153 24 7 1820 1963 577931427 577931578 4.680000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G140000 chr1B 185075523 185078161 2638 True 4874 4874 100.000 1 2639 1 chr1B.!!$R2 2638
1 TraesCS1B01G140000 chr1A 133159813 133161516 1703 True 1174 1934 89.479 138 1961 2 chr1A.!!$R1 1823
2 TraesCS1B01G140000 chr1D 121316500 121318318 1818 True 1114 1803 90.302 614 2639 2 chr1D.!!$R3 2025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 914 0.176449 CCATCTCACGCTCCATGACA 59.824 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2279 0.179225 GTATTGCGTTGCACCAGACG 60.179 55.0 4.31 4.31 38.71 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.649024 GAAAAATATGTGTGTTTTTGTTGATGG 57.351 29.630 1.08 0.00 38.32 3.51
39 40 6.783892 AATATGTGTGTTTTTGTTGATGGC 57.216 33.333 0.00 0.00 0.00 4.40
40 41 3.599730 TGTGTGTTTTTGTTGATGGCA 57.400 38.095 0.00 0.00 0.00 4.92
41 42 4.134379 TGTGTGTTTTTGTTGATGGCAT 57.866 36.364 0.00 0.00 0.00 4.40
42 43 4.511527 TGTGTGTTTTTGTTGATGGCATT 58.488 34.783 0.00 0.00 0.00 3.56
43 44 5.664457 TGTGTGTTTTTGTTGATGGCATTA 58.336 33.333 0.00 0.00 0.00 1.90
44 45 6.108687 TGTGTGTTTTTGTTGATGGCATTAA 58.891 32.000 0.00 0.00 0.00 1.40
45 46 6.595326 TGTGTGTTTTTGTTGATGGCATTAAA 59.405 30.769 6.23 0.00 0.00 1.52
46 47 7.281774 TGTGTGTTTTTGTTGATGGCATTAAAT 59.718 29.630 6.23 0.00 0.00 1.40
47 48 8.768955 GTGTGTTTTTGTTGATGGCATTAAATA 58.231 29.630 6.23 0.00 0.00 1.40
48 49 9.330063 TGTGTTTTTGTTGATGGCATTAAATAA 57.670 25.926 6.23 4.40 0.00 1.40
70 71 6.918892 AAAAGTAAAACAGTGAAATTGGCC 57.081 33.333 0.00 0.00 0.00 5.36
71 72 5.869649 AAGTAAAACAGTGAAATTGGCCT 57.130 34.783 3.32 0.00 0.00 5.19
72 73 5.869649 AGTAAAACAGTGAAATTGGCCTT 57.130 34.783 3.32 0.00 0.00 4.35
73 74 6.233905 AGTAAAACAGTGAAATTGGCCTTT 57.766 33.333 3.32 0.00 0.00 3.11
74 75 6.048509 AGTAAAACAGTGAAATTGGCCTTTG 58.951 36.000 3.32 0.00 0.00 2.77
75 76 3.473923 AACAGTGAAATTGGCCTTTGG 57.526 42.857 3.32 0.00 0.00 3.28
76 77 1.693606 ACAGTGAAATTGGCCTTTGGG 59.306 47.619 3.32 0.00 0.00 4.12
77 78 1.693606 CAGTGAAATTGGCCTTTGGGT 59.306 47.619 3.32 0.00 34.45 4.51
78 79 1.970640 AGTGAAATTGGCCTTTGGGTC 59.029 47.619 3.32 0.00 37.81 4.46
79 80 1.691434 GTGAAATTGGCCTTTGGGTCA 59.309 47.619 3.32 0.00 46.68 4.02
83 84 4.537260 TGGCCTTTGGGTCAATGG 57.463 55.556 3.32 7.84 45.20 3.16
84 85 1.229145 TGGCCTTTGGGTCAATGGG 60.229 57.895 3.32 5.63 45.20 4.00
85 86 1.989508 GGCCTTTGGGTCAATGGGG 60.990 63.158 12.45 3.71 38.56 4.96
86 87 1.229177 GCCTTTGGGTCAATGGGGT 60.229 57.895 12.45 0.00 38.56 4.95
87 88 0.835971 GCCTTTGGGTCAATGGGGTT 60.836 55.000 12.45 0.00 38.56 4.11
88 89 1.266178 CCTTTGGGTCAATGGGGTTC 58.734 55.000 5.08 0.00 35.75 3.62
89 90 0.887933 CTTTGGGTCAATGGGGTTCG 59.112 55.000 0.00 0.00 0.00 3.95
90 91 1.182385 TTTGGGTCAATGGGGTTCGC 61.182 55.000 0.00 0.00 0.00 4.70
91 92 2.754254 GGGTCAATGGGGTTCGCC 60.754 66.667 0.00 0.00 0.00 5.54
114 115 4.241555 CCTCCTCCCGGGCGAATG 62.242 72.222 18.49 4.39 34.39 2.67
115 116 3.154473 CTCCTCCCGGGCGAATGA 61.154 66.667 18.49 6.34 34.39 2.57
116 117 2.445845 TCCTCCCGGGCGAATGAT 60.446 61.111 18.49 0.00 34.39 2.45
117 118 2.031163 CCTCCCGGGCGAATGATC 59.969 66.667 18.49 0.00 0.00 2.92
118 119 2.807107 CCTCCCGGGCGAATGATCA 61.807 63.158 18.49 0.00 0.00 2.92
119 120 1.146041 CTCCCGGGCGAATGATCAA 59.854 57.895 18.49 0.00 0.00 2.57
120 121 0.882042 CTCCCGGGCGAATGATCAAG 60.882 60.000 18.49 0.00 0.00 3.02
121 122 1.893808 CCCGGGCGAATGATCAAGG 60.894 63.158 8.08 0.00 0.00 3.61
122 123 1.146041 CCGGGCGAATGATCAAGGA 59.854 57.895 0.00 0.00 0.00 3.36
123 124 0.463654 CCGGGCGAATGATCAAGGAA 60.464 55.000 0.00 0.00 0.00 3.36
124 125 0.940126 CGGGCGAATGATCAAGGAAG 59.060 55.000 0.00 0.00 0.00 3.46
125 126 1.312815 GGGCGAATGATCAAGGAAGG 58.687 55.000 0.00 0.00 0.00 3.46
126 127 1.312815 GGCGAATGATCAAGGAAGGG 58.687 55.000 0.00 0.00 0.00 3.95
127 128 1.408822 GGCGAATGATCAAGGAAGGGT 60.409 52.381 0.00 0.00 0.00 4.34
128 129 1.672881 GCGAATGATCAAGGAAGGGTG 59.327 52.381 0.00 0.00 0.00 4.61
129 130 2.680805 GCGAATGATCAAGGAAGGGTGA 60.681 50.000 0.00 0.00 0.00 4.02
130 131 3.813443 CGAATGATCAAGGAAGGGTGAT 58.187 45.455 0.00 0.00 37.19 3.06
131 132 4.202441 CGAATGATCAAGGAAGGGTGATT 58.798 43.478 0.00 0.00 34.61 2.57
132 133 4.274459 CGAATGATCAAGGAAGGGTGATTC 59.726 45.833 0.00 0.00 34.61 2.52
133 134 3.266510 TGATCAAGGAAGGGTGATTCG 57.733 47.619 0.00 0.00 34.61 3.34
134 135 2.571653 TGATCAAGGAAGGGTGATTCGT 59.428 45.455 0.00 0.00 34.61 3.85
135 136 3.009033 TGATCAAGGAAGGGTGATTCGTT 59.991 43.478 0.00 0.00 37.67 3.85
136 137 3.053831 TCAAGGAAGGGTGATTCGTTC 57.946 47.619 0.00 0.00 35.66 3.95
144 145 1.084370 GGTGATTCGTTCGCTGGGAG 61.084 60.000 0.00 0.00 35.11 4.30
147 148 1.424493 GATTCGTTCGCTGGGAGCAG 61.424 60.000 9.08 2.60 42.58 4.24
170 171 4.620567 GCCCCTTAGCAATCGAATTTGTTT 60.621 41.667 0.00 0.00 0.00 2.83
176 177 4.414852 AGCAATCGAATTTGTTTGATCCG 58.585 39.130 17.25 0.00 0.00 4.18
178 179 4.165036 CAATCGAATTTGTTTGATCCGCA 58.835 39.130 9.96 0.00 0.00 5.69
196 197 0.179026 CACTCCTCCATGGCATCCAG 60.179 60.000 6.96 0.00 36.75 3.86
197 198 0.326904 ACTCCTCCATGGCATCCAGA 60.327 55.000 6.96 0.00 36.75 3.86
208 209 1.436600 GCATCCAGACGCCAGATATG 58.563 55.000 0.00 0.00 0.00 1.78
210 211 2.930023 GCATCCAGACGCCAGATATGAG 60.930 54.545 0.00 0.00 0.00 2.90
211 212 2.364972 TCCAGACGCCAGATATGAGA 57.635 50.000 0.00 0.00 0.00 3.27
228 229 9.386122 AGATATGAGAGTCCTATTACATTGGTT 57.614 33.333 0.00 0.00 0.00 3.67
246 247 9.777297 ACATTGGTTTGTAAAATCTTAGCAAAT 57.223 25.926 0.00 0.00 32.71 2.32
257 258 7.883229 AAATCTTAGCAAATTTTTGTACGGG 57.117 32.000 5.05 0.00 40.24 5.28
269 274 9.642327 AAATTTTTGTACGGGTCATAATTTACC 57.358 29.630 0.00 0.00 34.85 2.85
278 283 5.533154 CGGGTCATAATTTACCTGCCAATTA 59.467 40.000 0.00 0.00 35.43 1.40
345 350 5.517322 AGACATTATGTACTCTTCCGGTC 57.483 43.478 0.00 0.00 0.00 4.79
359 364 3.985019 TCCGGTCCTTTTTACTATGCA 57.015 42.857 0.00 0.00 0.00 3.96
368 373 8.560374 GGTCCTTTTTACTATGCATGTAAGATC 58.440 37.037 10.16 6.51 32.43 2.75
371 376 9.113838 CCTTTTTACTATGCATGTAAGATCTGT 57.886 33.333 10.16 0.00 32.43 3.41
373 378 9.890629 TTTTTACTATGCATGTAAGATCTGTCT 57.109 29.630 10.16 0.00 35.82 3.41
379 384 5.414360 TGCATGTAAGATCTGTCTGAAGTC 58.586 41.667 0.00 0.00 34.13 3.01
549 554 7.713764 GTCAAACTTTATGACATTTGGCTTT 57.286 32.000 0.00 0.00 45.13 3.51
550 555 8.810652 GTCAAACTTTATGACATTTGGCTTTA 57.189 30.769 0.00 0.00 45.13 1.85
551 556 8.915654 GTCAAACTTTATGACATTTGGCTTTAG 58.084 33.333 0.00 0.00 45.13 1.85
552 557 8.855110 TCAAACTTTATGACATTTGGCTTTAGA 58.145 29.630 0.00 0.00 33.72 2.10
553 558 8.915654 CAAACTTTATGACATTTGGCTTTAGAC 58.084 33.333 0.00 0.00 0.00 2.59
554 559 7.759489 ACTTTATGACATTTGGCTTTAGACA 57.241 32.000 0.00 0.00 0.00 3.41
555 560 8.177119 ACTTTATGACATTTGGCTTTAGACAA 57.823 30.769 0.00 0.00 42.18 3.18
567 572 7.534085 TGGCTTTAGACAAATCTTACATACG 57.466 36.000 0.00 0.00 36.29 3.06
568 573 6.537301 TGGCTTTAGACAAATCTTACATACGG 59.463 38.462 0.00 0.00 36.29 4.02
569 574 6.759827 GGCTTTAGACAAATCTTACATACGGA 59.240 38.462 0.00 0.00 36.29 4.69
570 575 7.042658 GGCTTTAGACAAATCTTACATACGGAG 60.043 40.741 0.00 0.00 36.29 4.63
571 576 7.491696 GCTTTAGACAAATCTTACATACGGAGT 59.508 37.037 0.00 0.00 39.77 3.85
574 579 8.969260 TAGACAAATCTTACATACGGAGTAGA 57.031 34.615 0.00 0.00 40.79 2.59
575 580 9.399797 TAGACAAATCTTACATACGGAGTAGAA 57.600 33.333 0.00 0.00 40.79 2.10
584 589 2.599408 ACGGAGTAGAAAGGACTGGA 57.401 50.000 0.00 0.00 41.94 3.86
585 590 3.103080 ACGGAGTAGAAAGGACTGGAT 57.897 47.619 0.00 0.00 41.94 3.41
586 591 3.442076 ACGGAGTAGAAAGGACTGGATT 58.558 45.455 0.00 0.00 41.94 3.01
587 592 3.195825 ACGGAGTAGAAAGGACTGGATTG 59.804 47.826 0.00 0.00 41.94 2.67
588 593 3.447586 CGGAGTAGAAAGGACTGGATTGA 59.552 47.826 0.00 0.00 0.00 2.57
589 594 4.440802 CGGAGTAGAAAGGACTGGATTGAG 60.441 50.000 0.00 0.00 0.00 3.02
590 595 4.468153 GGAGTAGAAAGGACTGGATTGAGT 59.532 45.833 0.00 0.00 0.00 3.41
591 596 5.657302 GGAGTAGAAAGGACTGGATTGAGTA 59.343 44.000 0.00 0.00 0.00 2.59
592 597 6.325286 GGAGTAGAAAGGACTGGATTGAGTAT 59.675 42.308 0.00 0.00 0.00 2.12
593 598 7.147637 GGAGTAGAAAGGACTGGATTGAGTATT 60.148 40.741 0.00 0.00 0.00 1.89
594 599 8.152023 AGTAGAAAGGACTGGATTGAGTATTT 57.848 34.615 0.00 0.00 0.00 1.40
595 600 8.043710 AGTAGAAAGGACTGGATTGAGTATTTG 58.956 37.037 0.00 0.00 0.00 2.32
596 601 6.183347 AGAAAGGACTGGATTGAGTATTTGG 58.817 40.000 0.00 0.00 0.00 3.28
597 602 5.779241 AAGGACTGGATTGAGTATTTGGA 57.221 39.130 0.00 0.00 0.00 3.53
598 603 5.983333 AGGACTGGATTGAGTATTTGGAT 57.017 39.130 0.00 0.00 0.00 3.41
599 604 7.451731 AAGGACTGGATTGAGTATTTGGATA 57.548 36.000 0.00 0.00 0.00 2.59
600 605 7.072263 AGGACTGGATTGAGTATTTGGATAG 57.928 40.000 0.00 0.00 0.00 2.08
601 606 6.846505 AGGACTGGATTGAGTATTTGGATAGA 59.153 38.462 0.00 0.00 0.00 1.98
602 607 6.931840 GGACTGGATTGAGTATTTGGATAGAC 59.068 42.308 0.00 0.00 0.00 2.59
603 608 6.516718 ACTGGATTGAGTATTTGGATAGACG 58.483 40.000 0.00 0.00 0.00 4.18
604 609 6.098409 ACTGGATTGAGTATTTGGATAGACGT 59.902 38.462 0.00 0.00 0.00 4.34
605 610 6.280643 TGGATTGAGTATTTGGATAGACGTG 58.719 40.000 0.00 0.00 0.00 4.49
606 611 6.097696 TGGATTGAGTATTTGGATAGACGTGA 59.902 38.462 0.00 0.00 0.00 4.35
607 612 6.642950 GGATTGAGTATTTGGATAGACGTGAG 59.357 42.308 0.00 0.00 0.00 3.51
608 613 6.769134 TTGAGTATTTGGATAGACGTGAGA 57.231 37.500 0.00 0.00 0.00 3.27
609 614 6.132791 TGAGTATTTGGATAGACGTGAGAC 57.867 41.667 0.00 0.00 0.00 3.36
610 615 5.650703 TGAGTATTTGGATAGACGTGAGACA 59.349 40.000 0.00 0.00 0.00 3.41
611 616 6.152154 TGAGTATTTGGATAGACGTGAGACAA 59.848 38.462 0.00 0.00 0.00 3.18
612 617 6.331061 AGTATTTGGATAGACGTGAGACAAC 58.669 40.000 0.00 0.00 0.00 3.32
635 640 7.610580 ACTGAATTGGTTTTAGGGAAAATCA 57.389 32.000 0.00 0.00 42.61 2.57
642 647 6.003950 TGGTTTTAGGGAAAATCAGTGAGAG 58.996 40.000 0.00 0.00 40.08 3.20
643 648 6.183361 TGGTTTTAGGGAAAATCAGTGAGAGA 60.183 38.462 0.00 0.00 40.08 3.10
644 649 6.372937 GGTTTTAGGGAAAATCAGTGAGAGAG 59.627 42.308 0.00 0.00 35.95 3.20
649 654 6.788218 AGGGAAAATCAGTGAGAGAGAAAAT 58.212 36.000 0.00 0.00 0.00 1.82
666 671 8.120140 AGAGAAAATTCAAAGATGGAAGGAAG 57.880 34.615 0.00 0.00 0.00 3.46
833 840 4.796110 ACTACTATTTGGCATCCACCAT 57.204 40.909 0.00 0.00 40.13 3.55
889 896 6.096846 GCCATTCCTAAATAAAGAAAGCTCCA 59.903 38.462 0.00 0.00 0.00 3.86
890 897 7.201947 GCCATTCCTAAATAAAGAAAGCTCCAT 60.202 37.037 0.00 0.00 0.00 3.41
896 904 6.428385 AAATAAAGAAAGCTCCATCTCACG 57.572 37.500 0.00 0.00 0.00 4.35
904 912 0.749049 CTCCATCTCACGCTCCATGA 59.251 55.000 0.00 0.00 0.00 3.07
905 913 0.461548 TCCATCTCACGCTCCATGAC 59.538 55.000 0.00 0.00 0.00 3.06
906 914 0.176449 CCATCTCACGCTCCATGACA 59.824 55.000 0.00 0.00 0.00 3.58
907 915 1.568606 CATCTCACGCTCCATGACAG 58.431 55.000 0.00 0.00 0.00 3.51
908 916 1.135721 CATCTCACGCTCCATGACAGA 59.864 52.381 0.00 0.00 0.00 3.41
909 917 1.478631 TCTCACGCTCCATGACAGAT 58.521 50.000 0.00 0.00 0.00 2.90
910 918 1.135721 TCTCACGCTCCATGACAGATG 59.864 52.381 0.00 0.00 0.00 2.90
911 919 1.135721 CTCACGCTCCATGACAGATGA 59.864 52.381 0.00 0.00 0.00 2.92
912 920 1.134995 TCACGCTCCATGACAGATGAC 60.135 52.381 0.00 0.00 0.00 3.06
925 933 2.355756 ACAGATGACACACACAAAGCAC 59.644 45.455 0.00 0.00 0.00 4.40
972 980 3.209812 CGATCGCCTCGTCCCTGA 61.210 66.667 0.26 0.00 42.56 3.86
993 1001 6.385649 TGACCAAACCAATCAAGAAGTTAC 57.614 37.500 0.00 0.00 0.00 2.50
1005 1013 2.716217 AGAAGTTACTCAGCAATGGCC 58.284 47.619 0.00 0.00 42.56 5.36
1041 1049 1.241165 TGAGCGTGTCTTTCCTCGTA 58.759 50.000 0.00 0.00 0.00 3.43
1117 1125 2.738521 GCGCTTGCCGTCTCAAGA 60.739 61.111 0.00 0.00 44.61 3.02
1118 1126 2.317609 GCGCTTGCCGTCTCAAGAA 61.318 57.895 0.00 0.00 44.61 2.52
1426 1434 3.197790 CCATCGACAAGCAGGCCG 61.198 66.667 0.00 0.00 0.00 6.13
1427 1435 3.869272 CATCGACAAGCAGGCCGC 61.869 66.667 11.02 11.02 42.91 6.53
1676 1688 0.321122 CAGAGCCCTGTCCAGTTCAC 60.321 60.000 0.00 0.00 35.70 3.18
1677 1689 0.764369 AGAGCCCTGTCCAGTTCACA 60.764 55.000 0.00 0.00 0.00 3.58
1678 1690 0.603975 GAGCCCTGTCCAGTTCACAC 60.604 60.000 0.00 0.00 0.00 3.82
1679 1691 1.148273 GCCCTGTCCAGTTCACACA 59.852 57.895 0.00 0.00 0.00 3.72
1681 1693 1.527034 CCCTGTCCAGTTCACACATG 58.473 55.000 0.00 0.00 0.00 3.21
1682 1694 0.877071 CCTGTCCAGTTCACACATGC 59.123 55.000 0.00 0.00 0.00 4.06
1683 1695 1.596603 CTGTCCAGTTCACACATGCA 58.403 50.000 0.00 0.00 0.00 3.96
1684 1696 2.156917 CTGTCCAGTTCACACATGCAT 58.843 47.619 0.00 0.00 0.00 3.96
1685 1697 1.881324 TGTCCAGTTCACACATGCATG 59.119 47.619 25.09 25.09 0.00 4.06
1686 1698 1.881973 GTCCAGTTCACACATGCATGT 59.118 47.619 26.61 26.61 42.84 3.21
1687 1699 3.073678 GTCCAGTTCACACATGCATGTA 58.926 45.455 30.92 14.30 39.39 2.29
1688 1700 3.125829 GTCCAGTTCACACATGCATGTAG 59.874 47.826 30.92 24.66 39.39 2.74
1689 1701 2.159476 CCAGTTCACACATGCATGTAGC 60.159 50.000 30.92 17.95 39.39 3.58
1733 1745 5.212194 TGCTTCGTTAAATGTTTGCTTCTC 58.788 37.500 0.00 0.00 0.00 2.87
1864 1877 3.908476 TCTAGATGTGCCATCTGAGTCT 58.092 45.455 21.20 4.28 0.00 3.24
1865 1878 5.053978 TCTAGATGTGCCATCTGAGTCTA 57.946 43.478 21.20 5.77 0.00 2.59
1885 1980 9.347934 GAGTCTAATATCATTGATCTTACACGG 57.652 37.037 1.55 0.00 0.00 4.94
1894 1989 5.823209 TTGATCTTACACGGAGATTCGTA 57.177 39.130 0.00 0.00 41.86 3.43
1896 1991 7.500720 TTGATCTTACACGGAGATTCGTATA 57.499 36.000 0.00 0.00 41.86 1.47
1905 2000 7.144000 ACACGGAGATTCGTATAGGTATTTTC 58.856 38.462 0.00 0.00 41.86 2.29
1906 2001 6.585322 CACGGAGATTCGTATAGGTATTTTCC 59.415 42.308 0.00 0.92 41.86 3.13
1907 2002 6.098017 CGGAGATTCGTATAGGTATTTTCCC 58.902 44.000 9.13 0.00 0.00 3.97
1935 2034 6.628919 TTTCCTTTTTCTCTTTACCCTTCG 57.371 37.500 0.00 0.00 0.00 3.79
1953 2052 5.105877 CCCTTCGTTGAGTCACTTAGATGTA 60.106 44.000 0.00 0.00 0.00 2.29
1965 2064 9.476928 AGTCACTTAGATGTACAATAACTAGGT 57.523 33.333 0.00 5.80 0.00 3.08
2002 2101 8.254508 TGTGCCCTAACAAATCCAAAATTATAC 58.745 33.333 0.00 0.00 0.00 1.47
2003 2102 8.474831 GTGCCCTAACAAATCCAAAATTATACT 58.525 33.333 0.00 0.00 0.00 2.12
2004 2103 8.691797 TGCCCTAACAAATCCAAAATTATACTC 58.308 33.333 0.00 0.00 0.00 2.59
2005 2104 8.141909 GCCCTAACAAATCCAAAATTATACTCC 58.858 37.037 0.00 0.00 0.00 3.85
2006 2105 8.638873 CCCTAACAAATCCAAAATTATACTCCC 58.361 37.037 0.00 0.00 0.00 4.30
2007 2106 9.421399 CCTAACAAATCCAAAATTATACTCCCT 57.579 33.333 0.00 0.00 0.00 4.20
2009 2108 7.898014 ACAAATCCAAAATTATACTCCCTCC 57.102 36.000 0.00 0.00 0.00 4.30
2010 2109 7.418378 ACAAATCCAAAATTATACTCCCTCCA 58.582 34.615 0.00 0.00 0.00 3.86
2011 2110 8.067488 ACAAATCCAAAATTATACTCCCTCCAT 58.933 33.333 0.00 0.00 0.00 3.41
2012 2111 8.927411 CAAATCCAAAATTATACTCCCTCCATT 58.073 33.333 0.00 0.00 0.00 3.16
2013 2112 8.712228 AATCCAAAATTATACTCCCTCCATTC 57.288 34.615 0.00 0.00 0.00 2.67
2014 2113 6.610830 TCCAAAATTATACTCCCTCCATTCC 58.389 40.000 0.00 0.00 0.00 3.01
2015 2114 6.392842 TCCAAAATTATACTCCCTCCATTCCT 59.607 38.462 0.00 0.00 0.00 3.36
2016 2115 7.574750 TCCAAAATTATACTCCCTCCATTCCTA 59.425 37.037 0.00 0.00 0.00 2.94
2017 2116 8.224720 CCAAAATTATACTCCCTCCATTCCTAA 58.775 37.037 0.00 0.00 0.00 2.69
2018 2117 9.640952 CAAAATTATACTCCCTCCATTCCTAAA 57.359 33.333 0.00 0.00 0.00 1.85
2042 2141 8.459911 AATATAGGGTGTATAGTTTTTGGCAC 57.540 34.615 0.00 0.00 0.00 5.01
2043 2142 3.078837 AGGGTGTATAGTTTTTGGCACG 58.921 45.455 0.00 0.00 0.00 5.34
2044 2143 2.162809 GGGTGTATAGTTTTTGGCACGG 59.837 50.000 0.00 0.00 0.00 4.94
2045 2144 3.075884 GGTGTATAGTTTTTGGCACGGA 58.924 45.455 0.00 0.00 0.00 4.69
2046 2145 3.502979 GGTGTATAGTTTTTGGCACGGAA 59.497 43.478 0.00 0.00 0.00 4.30
2047 2146 4.023021 GGTGTATAGTTTTTGGCACGGAAA 60.023 41.667 0.00 0.00 0.00 3.13
2048 2147 5.336134 GGTGTATAGTTTTTGGCACGGAAAT 60.336 40.000 0.00 0.00 0.00 2.17
2049 2148 6.153756 GTGTATAGTTTTTGGCACGGAAATT 58.846 36.000 0.00 0.00 0.00 1.82
2050 2149 7.306953 GTGTATAGTTTTTGGCACGGAAATTA 58.693 34.615 0.00 0.00 0.00 1.40
2051 2150 7.808856 GTGTATAGTTTTTGGCACGGAAATTAA 59.191 33.333 0.00 0.00 0.00 1.40
2052 2151 8.358148 TGTATAGTTTTTGGCACGGAAATTAAA 58.642 29.630 0.00 0.00 0.00 1.52
2053 2152 7.883229 ATAGTTTTTGGCACGGAAATTAAAG 57.117 32.000 0.00 0.00 0.00 1.85
2054 2153 5.908341 AGTTTTTGGCACGGAAATTAAAGA 58.092 33.333 0.00 0.00 0.00 2.52
2055 2154 6.342111 AGTTTTTGGCACGGAAATTAAAGAA 58.658 32.000 0.00 0.00 0.00 2.52
2056 2155 6.256975 AGTTTTTGGCACGGAAATTAAAGAAC 59.743 34.615 0.00 0.00 0.00 3.01
2057 2156 3.546002 TGGCACGGAAATTAAAGAACG 57.454 42.857 0.00 0.00 0.00 3.95
2058 2157 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
2059 2158 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
2060 2159 2.655001 GCACGGAAATTAAAGAACGCAC 59.345 45.455 0.00 0.00 0.00 5.34
2061 2160 3.850374 GCACGGAAATTAAAGAACGCACA 60.850 43.478 0.00 0.00 0.00 4.57
2062 2161 4.472286 CACGGAAATTAAAGAACGCACAT 58.528 39.130 0.00 0.00 0.00 3.21
2063 2162 4.320690 CACGGAAATTAAAGAACGCACATG 59.679 41.667 0.00 0.00 0.00 3.21
2064 2163 3.851403 CGGAAATTAAAGAACGCACATGG 59.149 43.478 0.00 0.00 0.00 3.66
2065 2164 4.378978 CGGAAATTAAAGAACGCACATGGA 60.379 41.667 0.00 0.00 0.00 3.41
2066 2165 5.095490 GGAAATTAAAGAACGCACATGGAG 58.905 41.667 0.00 0.00 0.00 3.86
2067 2166 4.701956 AATTAAAGAACGCACATGGAGG 57.298 40.909 0.00 0.00 0.00 4.30
2068 2167 2.107950 TAAAGAACGCACATGGAGGG 57.892 50.000 0.00 0.00 0.00 4.30
2069 2168 0.400213 AAAGAACGCACATGGAGGGA 59.600 50.000 10.67 0.00 0.00 4.20
2070 2169 0.400213 AAGAACGCACATGGAGGGAA 59.600 50.000 10.67 0.00 0.00 3.97
2071 2170 0.400213 AGAACGCACATGGAGGGAAA 59.600 50.000 10.67 0.00 0.00 3.13
2072 2171 1.202879 AGAACGCACATGGAGGGAAAA 60.203 47.619 10.67 0.00 0.00 2.29
2073 2172 1.818674 GAACGCACATGGAGGGAAAAT 59.181 47.619 10.67 0.00 0.00 1.82
2074 2173 1.923356 ACGCACATGGAGGGAAAATT 58.077 45.000 10.67 0.00 0.00 1.82
2075 2174 2.247358 ACGCACATGGAGGGAAAATTT 58.753 42.857 10.67 0.00 0.00 1.82
2076 2175 2.231235 ACGCACATGGAGGGAAAATTTC 59.769 45.455 10.67 0.00 0.00 2.17
2077 2176 2.230992 CGCACATGGAGGGAAAATTTCA 59.769 45.455 8.09 0.00 0.00 2.69
2078 2177 3.588955 GCACATGGAGGGAAAATTTCAC 58.411 45.455 8.09 3.68 0.00 3.18
2079 2178 3.006752 GCACATGGAGGGAAAATTTCACA 59.993 43.478 10.88 2.87 34.83 3.58
2080 2179 4.502950 GCACATGGAGGGAAAATTTCACAA 60.503 41.667 10.88 0.00 34.83 3.33
2081 2180 5.232463 CACATGGAGGGAAAATTTCACAAG 58.768 41.667 10.88 2.52 34.83 3.16
2082 2181 4.901250 ACATGGAGGGAAAATTTCACAAGT 59.099 37.500 10.88 3.07 34.83 3.16
2083 2182 5.366477 ACATGGAGGGAAAATTTCACAAGTT 59.634 36.000 10.88 0.00 34.83 2.66
2084 2183 5.948742 TGGAGGGAAAATTTCACAAGTTT 57.051 34.783 10.88 0.00 34.83 2.66
2085 2184 6.306643 TGGAGGGAAAATTTCACAAGTTTT 57.693 33.333 10.88 0.00 34.83 2.43
2086 2185 6.112058 TGGAGGGAAAATTTCACAAGTTTTG 58.888 36.000 10.88 0.00 34.83 2.44
2087 2186 5.527214 GGAGGGAAAATTTCACAAGTTTTGG 59.473 40.000 10.88 0.00 34.83 3.28
2088 2187 5.436175 AGGGAAAATTTCACAAGTTTTGGG 58.564 37.500 10.88 0.00 34.83 4.12
2089 2188 4.036262 GGGAAAATTTCACAAGTTTTGGGC 59.964 41.667 8.09 0.00 30.39 5.36
2090 2189 4.260579 GGAAAATTTCACAAGTTTTGGGCG 60.261 41.667 8.09 0.00 30.39 6.13
2091 2190 3.810310 AATTTCACAAGTTTTGGGCGA 57.190 38.095 0.00 0.00 32.92 5.54
2092 2191 2.861462 TTTCACAAGTTTTGGGCGAG 57.139 45.000 0.00 0.00 32.92 5.03
2093 2192 2.045561 TTCACAAGTTTTGGGCGAGA 57.954 45.000 0.00 0.00 32.92 4.04
2094 2193 2.270352 TCACAAGTTTTGGGCGAGAT 57.730 45.000 0.00 0.00 32.92 2.75
2095 2194 2.582052 TCACAAGTTTTGGGCGAGATT 58.418 42.857 0.00 0.00 32.92 2.40
2096 2195 3.745799 TCACAAGTTTTGGGCGAGATTA 58.254 40.909 0.00 0.00 32.92 1.75
2097 2196 3.500680 TCACAAGTTTTGGGCGAGATTAC 59.499 43.478 0.00 0.00 32.92 1.89
2098 2197 3.252215 CACAAGTTTTGGGCGAGATTACA 59.748 43.478 0.00 0.00 34.12 2.41
2099 2198 3.252458 ACAAGTTTTGGGCGAGATTACAC 59.748 43.478 0.00 0.00 34.12 2.90
2100 2199 2.433436 AGTTTTGGGCGAGATTACACC 58.567 47.619 0.00 0.00 0.00 4.16
2101 2200 2.039879 AGTTTTGGGCGAGATTACACCT 59.960 45.455 0.00 0.00 0.00 4.00
2102 2201 3.262405 AGTTTTGGGCGAGATTACACCTA 59.738 43.478 0.00 0.00 0.00 3.08
2103 2202 3.985019 TTTGGGCGAGATTACACCTAA 57.015 42.857 0.00 0.00 0.00 2.69
2104 2203 2.973694 TGGGCGAGATTACACCTAAC 57.026 50.000 0.00 0.00 0.00 2.34
2105 2204 2.463752 TGGGCGAGATTACACCTAACT 58.536 47.619 0.00 0.00 0.00 2.24
2106 2205 3.634504 TGGGCGAGATTACACCTAACTA 58.365 45.455 0.00 0.00 0.00 2.24
2107 2206 4.025360 TGGGCGAGATTACACCTAACTAA 58.975 43.478 0.00 0.00 0.00 2.24
2108 2207 4.652421 TGGGCGAGATTACACCTAACTAAT 59.348 41.667 0.00 0.00 0.00 1.73
2109 2208 5.129815 TGGGCGAGATTACACCTAACTAATT 59.870 40.000 0.00 0.00 0.00 1.40
2110 2209 5.465724 GGGCGAGATTACACCTAACTAATTG 59.534 44.000 0.00 0.00 0.00 2.32
2111 2210 6.278363 GGCGAGATTACACCTAACTAATTGA 58.722 40.000 0.00 0.00 0.00 2.57
2112 2211 6.200475 GGCGAGATTACACCTAACTAATTGAC 59.800 42.308 0.00 0.00 0.00 3.18
2113 2212 6.755141 GCGAGATTACACCTAACTAATTGACA 59.245 38.462 0.00 0.00 0.00 3.58
2114 2213 7.438459 GCGAGATTACACCTAACTAATTGACAT 59.562 37.037 0.00 0.00 0.00 3.06
2115 2214 8.755941 CGAGATTACACCTAACTAATTGACATG 58.244 37.037 0.00 0.00 0.00 3.21
2116 2215 9.817809 GAGATTACACCTAACTAATTGACATGA 57.182 33.333 0.00 0.00 0.00 3.07
2117 2216 9.823647 AGATTACACCTAACTAATTGACATGAG 57.176 33.333 0.00 0.00 0.00 2.90
2118 2217 9.817809 GATTACACCTAACTAATTGACATGAGA 57.182 33.333 0.00 0.00 0.00 3.27
2121 2220 8.918202 ACACCTAACTAATTGACATGAGAAAA 57.082 30.769 0.00 0.00 0.00 2.29
2122 2221 9.520515 ACACCTAACTAATTGACATGAGAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
2130 2229 9.294030 CTAATTGACATGAGAAAATAAAGGTGC 57.706 33.333 0.00 0.00 0.00 5.01
2131 2230 6.899393 TTGACATGAGAAAATAAAGGTGCT 57.101 33.333 0.00 0.00 0.00 4.40
2132 2231 6.899393 TGACATGAGAAAATAAAGGTGCTT 57.101 33.333 0.00 0.00 0.00 3.91
2133 2232 6.680810 TGACATGAGAAAATAAAGGTGCTTG 58.319 36.000 0.00 0.00 0.00 4.01
2134 2233 5.473039 ACATGAGAAAATAAAGGTGCTTGC 58.527 37.500 0.00 0.00 0.00 4.01
2135 2234 5.244626 ACATGAGAAAATAAAGGTGCTTGCT 59.755 36.000 0.00 0.00 0.00 3.91
2136 2235 5.789643 TGAGAAAATAAAGGTGCTTGCTT 57.210 34.783 0.00 0.00 0.00 3.91
2137 2236 5.531634 TGAGAAAATAAAGGTGCTTGCTTG 58.468 37.500 0.00 0.00 0.00 4.01
2138 2237 5.301551 TGAGAAAATAAAGGTGCTTGCTTGA 59.698 36.000 0.00 0.00 0.00 3.02
2139 2238 6.015180 TGAGAAAATAAAGGTGCTTGCTTGAT 60.015 34.615 0.00 0.00 0.00 2.57
2140 2239 7.176515 TGAGAAAATAAAGGTGCTTGCTTGATA 59.823 33.333 0.00 0.00 0.00 2.15
2141 2240 8.071177 AGAAAATAAAGGTGCTTGCTTGATAT 57.929 30.769 0.00 0.00 0.00 1.63
2142 2241 9.189156 AGAAAATAAAGGTGCTTGCTTGATATA 57.811 29.630 0.00 0.00 0.00 0.86
2143 2242 9.801873 GAAAATAAAGGTGCTTGCTTGATATAA 57.198 29.630 0.00 0.00 0.00 0.98
2144 2243 9.807649 AAAATAAAGGTGCTTGCTTGATATAAG 57.192 29.630 0.00 0.00 0.00 1.73
2145 2244 5.841957 AAAGGTGCTTGCTTGATATAAGG 57.158 39.130 0.00 0.00 0.00 2.69
2146 2245 4.778213 AGGTGCTTGCTTGATATAAGGA 57.222 40.909 0.00 0.00 0.00 3.36
2147 2246 5.116084 AGGTGCTTGCTTGATATAAGGAA 57.884 39.130 0.00 0.00 0.00 3.36
2148 2247 5.699143 AGGTGCTTGCTTGATATAAGGAAT 58.301 37.500 0.00 0.00 0.00 3.01
2149 2248 6.131961 AGGTGCTTGCTTGATATAAGGAATT 58.868 36.000 0.00 0.00 0.00 2.17
2150 2249 6.040166 AGGTGCTTGCTTGATATAAGGAATTG 59.960 38.462 0.00 0.00 0.00 2.32
2151 2250 6.183360 GGTGCTTGCTTGATATAAGGAATTGT 60.183 38.462 0.00 0.00 0.00 2.71
2152 2251 7.013274 GGTGCTTGCTTGATATAAGGAATTGTA 59.987 37.037 0.00 0.00 0.00 2.41
2153 2252 8.405531 GTGCTTGCTTGATATAAGGAATTGTAA 58.594 33.333 0.00 0.00 0.00 2.41
2154 2253 8.965819 TGCTTGCTTGATATAAGGAATTGTAAA 58.034 29.630 0.00 0.00 0.00 2.01
2155 2254 9.237846 GCTTGCTTGATATAAGGAATTGTAAAC 57.762 33.333 0.00 0.00 0.00 2.01
2188 2287 5.432885 AAAAGTTATCCAAACGTCTGGTG 57.567 39.130 8.00 0.00 37.74 4.17
2189 2288 2.423577 AGTTATCCAAACGTCTGGTGC 58.576 47.619 8.00 0.00 37.74 5.01
2190 2289 2.147958 GTTATCCAAACGTCTGGTGCA 58.852 47.619 8.00 0.00 37.74 4.57
2191 2290 2.550606 GTTATCCAAACGTCTGGTGCAA 59.449 45.455 8.00 0.00 37.74 4.08
2192 2291 0.951558 ATCCAAACGTCTGGTGCAAC 59.048 50.000 8.00 0.00 37.74 4.17
2193 2292 1.010125 CCAAACGTCTGGTGCAACG 60.010 57.895 0.00 7.09 44.22 4.10
2194 2293 1.654137 CAAACGTCTGGTGCAACGC 60.654 57.895 8.50 0.00 42.47 4.84
2195 2294 2.109739 AAACGTCTGGTGCAACGCA 61.110 52.632 8.50 0.00 42.47 5.24
2196 2295 1.649390 AAACGTCTGGTGCAACGCAA 61.649 50.000 8.50 0.00 41.47 4.85
2197 2296 1.444119 AACGTCTGGTGCAACGCAAT 61.444 50.000 8.50 0.00 41.47 3.56
2198 2297 0.601576 ACGTCTGGTGCAACGCAATA 60.602 50.000 8.50 0.00 41.47 1.90
2199 2298 0.179225 CGTCTGGTGCAACGCAATAC 60.179 55.000 0.00 0.00 41.47 1.89
2200 2299 0.871722 GTCTGGTGCAACGCAATACA 59.128 50.000 0.00 0.00 41.47 2.29
2201 2300 0.871722 TCTGGTGCAACGCAATACAC 59.128 50.000 0.00 0.00 41.47 2.90
2202 2301 4.859784 GGTGCAACGCAATACACC 57.140 55.556 0.00 0.00 45.22 4.16
2206 2305 3.757745 GTGCAACGCAATACACCTTAT 57.242 42.857 0.00 0.00 41.47 1.73
2207 2306 4.868450 GTGCAACGCAATACACCTTATA 57.132 40.909 0.00 0.00 41.47 0.98
2208 2307 5.418310 GTGCAACGCAATACACCTTATAT 57.582 39.130 0.00 0.00 41.47 0.86
2209 2308 5.816919 GTGCAACGCAATACACCTTATATT 58.183 37.500 0.00 0.00 41.47 1.28
2210 2309 6.262601 GTGCAACGCAATACACCTTATATTT 58.737 36.000 0.00 0.00 41.47 1.40
2211 2310 6.413818 GTGCAACGCAATACACCTTATATTTC 59.586 38.462 0.00 0.00 41.47 2.17
2212 2311 5.619607 GCAACGCAATACACCTTATATTTCG 59.380 40.000 0.00 0.00 35.61 3.46
2213 2312 5.917541 ACGCAATACACCTTATATTTCGG 57.082 39.130 0.00 0.00 34.36 4.30
2214 2313 5.603596 ACGCAATACACCTTATATTTCGGA 58.396 37.500 0.00 0.00 34.36 4.55
2215 2314 5.694910 ACGCAATACACCTTATATTTCGGAG 59.305 40.000 0.00 0.00 34.36 4.63
2216 2315 5.694910 CGCAATACACCTTATATTTCGGAGT 59.305 40.000 0.00 0.00 28.90 3.85
2217 2316 6.202188 CGCAATACACCTTATATTTCGGAGTT 59.798 38.462 0.00 0.00 28.90 3.01
2218 2317 7.254658 CGCAATACACCTTATATTTCGGAGTTT 60.255 37.037 0.00 0.00 28.90 2.66
2219 2318 8.403236 GCAATACACCTTATATTTCGGAGTTTT 58.597 33.333 0.00 0.00 0.00 2.43
2222 2321 9.901172 ATACACCTTATATTTCGGAGTTTTTCT 57.099 29.630 0.00 0.00 0.00 2.52
2223 2322 8.265165 ACACCTTATATTTCGGAGTTTTTCTC 57.735 34.615 0.00 0.00 42.07 2.87
2224 2323 7.881232 ACACCTTATATTTCGGAGTTTTTCTCA 59.119 33.333 0.00 0.00 44.40 3.27
2225 2324 8.726988 CACCTTATATTTCGGAGTTTTTCTCAA 58.273 33.333 0.00 0.00 44.40 3.02
2226 2325 9.292195 ACCTTATATTTCGGAGTTTTTCTCAAA 57.708 29.630 0.00 0.00 44.40 2.69
2236 2335 9.496873 TCGGAGTTTTTCTCAAAAATCTATACA 57.503 29.630 7.56 0.00 43.48 2.29
2237 2336 9.543018 CGGAGTTTTTCTCAAAAATCTATACAC 57.457 33.333 7.56 0.00 43.48 2.90
2238 2337 9.841880 GGAGTTTTTCTCAAAAATCTATACACC 57.158 33.333 7.56 0.00 43.48 4.16
2255 2354 9.877222 TCTATACACCTTATATCAAGGAACAGA 57.123 33.333 9.96 2.87 39.81 3.41
2257 2356 6.240549 ACACCTTATATCAAGGAACAGAGG 57.759 41.667 9.96 0.00 39.81 3.69
2258 2357 5.131142 ACACCTTATATCAAGGAACAGAGGG 59.869 44.000 9.96 0.00 39.81 4.30
2259 2358 5.366768 CACCTTATATCAAGGAACAGAGGGA 59.633 44.000 9.96 0.00 39.81 4.20
2260 2359 5.604650 ACCTTATATCAAGGAACAGAGGGAG 59.395 44.000 9.96 0.00 39.81 4.30
2261 2360 5.604650 CCTTATATCAAGGAACAGAGGGAGT 59.395 44.000 0.00 0.00 39.81 3.85
2262 2361 6.782988 CCTTATATCAAGGAACAGAGGGAGTA 59.217 42.308 0.00 0.00 39.81 2.59
2263 2362 7.290248 CCTTATATCAAGGAACAGAGGGAGTAA 59.710 40.741 0.00 0.00 39.81 2.24
2264 2363 8.618240 TTATATCAAGGAACAGAGGGAGTAAA 57.382 34.615 0.00 0.00 0.00 2.01
2265 2364 5.843019 ATCAAGGAACAGAGGGAGTAAAA 57.157 39.130 0.00 0.00 0.00 1.52
2276 2375 9.454859 AACAGAGGGAGTAAAATTTATCTCTTG 57.545 33.333 16.62 11.72 0.00 3.02
2352 2451 9.656040 TTTCAACCTATTCATTTTCAATCATGG 57.344 29.630 0.00 0.00 0.00 3.66
2363 2462 1.737236 TCAATCATGGCAGTACAACGC 59.263 47.619 0.00 0.00 0.00 4.84
2405 2504 5.958321 TCTACATCCAGATCTGTAGTCCAT 58.042 41.667 21.11 3.11 43.39 3.41
2408 2507 5.215069 ACATCCAGATCTGTAGTCCATCTT 58.785 41.667 21.11 0.00 0.00 2.40
2410 2509 7.015680 ACATCCAGATCTGTAGTCCATCTTAT 58.984 38.462 21.11 0.00 0.00 1.73
2414 2513 6.377780 CAGATCTGTAGTCCATCTTATGACG 58.622 44.000 14.95 0.00 0.00 4.35
2415 2514 6.205658 CAGATCTGTAGTCCATCTTATGACGA 59.794 42.308 14.95 0.00 0.00 4.20
2420 2519 6.615264 GTAGTCCATCTTATGACGACTACA 57.385 41.667 25.10 8.36 45.73 2.74
2425 2524 4.742167 CCATCTTATGACGACTACAAGCAG 59.258 45.833 0.00 0.00 0.00 4.24
2430 2529 6.805271 TCTTATGACGACTACAAGCAGTAAAC 59.195 38.462 0.00 0.00 30.92 2.01
2431 2530 4.579454 TGACGACTACAAGCAGTAAACT 57.421 40.909 0.00 0.00 30.92 2.66
2437 2536 2.638480 ACAAGCAGTAAACTGAGCCA 57.362 45.000 14.21 0.00 46.59 4.75
2443 2542 2.855180 CAGTAAACTGAGCCAAATGCG 58.145 47.619 3.99 0.00 46.59 4.73
2484 2583 1.078214 TCGATGGAGCCAGGCAAAG 60.078 57.895 15.80 0.00 0.00 2.77
2491 2590 1.247567 GAGCCAGGCAAAGCTTGTTA 58.752 50.000 15.80 0.00 40.11 2.41
2501 2600 6.371548 CAGGCAAAGCTTGTTATAGTAGACAA 59.628 38.462 0.00 2.90 34.80 3.18
2504 2603 6.672357 GCAAAGCTTGTTATAGTAGACAACCG 60.672 42.308 0.00 0.00 32.73 4.44
2505 2604 5.909621 AGCTTGTTATAGTAGACAACCGA 57.090 39.130 0.00 0.00 32.73 4.69
2506 2605 6.276832 AGCTTGTTATAGTAGACAACCGAA 57.723 37.500 0.00 0.00 32.73 4.30
2509 2608 7.658575 AGCTTGTTATAGTAGACAACCGAAAAA 59.341 33.333 0.00 0.00 32.73 1.94
2541 2640 0.734889 GGCATCATACAACAAGCGCT 59.265 50.000 2.64 2.64 0.00 5.92
2548 2647 2.472695 TACAACAAGCGCTCCAGAAT 57.527 45.000 12.06 0.00 0.00 2.40
2556 2655 2.205074 AGCGCTCCAGAATAACAATCG 58.795 47.619 2.64 0.00 0.00 3.34
2564 2663 6.628919 TCCAGAATAACAATCGTCGAGATA 57.371 37.500 0.00 0.00 38.98 1.98
2588 2687 5.508200 AGAGAAGTGTAGATCGGAATGAC 57.492 43.478 0.00 0.00 0.00 3.06
2589 2688 5.197451 AGAGAAGTGTAGATCGGAATGACT 58.803 41.667 0.00 0.00 0.00 3.41
2593 2692 5.000012 AGTGTAGATCGGAATGACTCAAC 58.000 43.478 0.00 0.00 0.00 3.18
2596 2695 6.377429 AGTGTAGATCGGAATGACTCAACTTA 59.623 38.462 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.649024 CCATCAACAAAAACACACATATTTTTC 57.351 29.630 0.00 0.00 36.18 2.29
13 14 8.127954 GCCATCAACAAAAACACACATATTTTT 58.872 29.630 0.00 0.00 38.28 1.94
14 15 7.281774 TGCCATCAACAAAAACACACATATTTT 59.718 29.630 0.00 0.00 0.00 1.82
15 16 6.765036 TGCCATCAACAAAAACACACATATTT 59.235 30.769 0.00 0.00 0.00 1.40
16 17 6.286758 TGCCATCAACAAAAACACACATATT 58.713 32.000 0.00 0.00 0.00 1.28
17 18 5.851720 TGCCATCAACAAAAACACACATAT 58.148 33.333 0.00 0.00 0.00 1.78
18 19 5.268118 TGCCATCAACAAAAACACACATA 57.732 34.783 0.00 0.00 0.00 2.29
19 20 4.134379 TGCCATCAACAAAAACACACAT 57.866 36.364 0.00 0.00 0.00 3.21
20 21 3.599730 TGCCATCAACAAAAACACACA 57.400 38.095 0.00 0.00 0.00 3.72
21 22 6.595772 TTAATGCCATCAACAAAAACACAC 57.404 33.333 0.00 0.00 0.00 3.82
22 23 7.798596 ATTTAATGCCATCAACAAAAACACA 57.201 28.000 0.00 0.00 0.00 3.72
44 45 9.051679 GGCCAATTTCACTGTTTTACTTTTATT 57.948 29.630 0.00 0.00 0.00 1.40
45 46 8.428852 AGGCCAATTTCACTGTTTTACTTTTAT 58.571 29.630 5.01 0.00 0.00 1.40
46 47 7.787028 AGGCCAATTTCACTGTTTTACTTTTA 58.213 30.769 5.01 0.00 0.00 1.52
47 48 6.649155 AGGCCAATTTCACTGTTTTACTTTT 58.351 32.000 5.01 0.00 0.00 2.27
48 49 6.233905 AGGCCAATTTCACTGTTTTACTTT 57.766 33.333 5.01 0.00 0.00 2.66
49 50 5.869649 AGGCCAATTTCACTGTTTTACTT 57.130 34.783 5.01 0.00 0.00 2.24
50 51 5.869649 AAGGCCAATTTCACTGTTTTACT 57.130 34.783 5.01 0.00 0.00 2.24
51 52 5.236263 CCAAAGGCCAATTTCACTGTTTTAC 59.764 40.000 5.01 0.00 0.00 2.01
52 53 5.363939 CCAAAGGCCAATTTCACTGTTTTA 58.636 37.500 5.01 0.00 0.00 1.52
53 54 4.198530 CCAAAGGCCAATTTCACTGTTTT 58.801 39.130 5.01 0.00 0.00 2.43
54 55 3.433456 CCCAAAGGCCAATTTCACTGTTT 60.433 43.478 5.01 0.00 0.00 2.83
55 56 2.104622 CCCAAAGGCCAATTTCACTGTT 59.895 45.455 5.01 0.00 0.00 3.16
56 57 1.693606 CCCAAAGGCCAATTTCACTGT 59.306 47.619 5.01 0.00 0.00 3.55
57 58 1.693606 ACCCAAAGGCCAATTTCACTG 59.306 47.619 5.01 0.00 36.11 3.66
58 59 1.970640 GACCCAAAGGCCAATTTCACT 59.029 47.619 5.01 0.00 36.11 3.41
59 60 1.691434 TGACCCAAAGGCCAATTTCAC 59.309 47.619 5.01 0.00 36.11 3.18
60 61 2.094100 TGACCCAAAGGCCAATTTCA 57.906 45.000 5.01 0.00 36.11 2.69
61 62 3.337358 CATTGACCCAAAGGCCAATTTC 58.663 45.455 5.01 0.00 36.11 2.17
62 63 2.040145 CCATTGACCCAAAGGCCAATTT 59.960 45.455 5.01 0.00 36.11 1.82
63 64 1.629861 CCATTGACCCAAAGGCCAATT 59.370 47.619 5.01 0.00 36.11 2.32
64 65 1.278537 CCATTGACCCAAAGGCCAAT 58.721 50.000 5.01 0.00 36.11 3.16
65 66 0.835543 CCCATTGACCCAAAGGCCAA 60.836 55.000 5.01 0.00 31.72 4.52
66 67 1.229145 CCCATTGACCCAAAGGCCA 60.229 57.895 5.01 0.00 31.72 5.36
67 68 1.989508 CCCCATTGACCCAAAGGCC 60.990 63.158 0.00 0.00 31.72 5.19
68 69 0.835971 AACCCCATTGACCCAAAGGC 60.836 55.000 0.00 0.00 31.72 4.35
69 70 1.266178 GAACCCCATTGACCCAAAGG 58.734 55.000 0.00 0.00 40.04 3.11
70 71 0.887933 CGAACCCCATTGACCCAAAG 59.112 55.000 0.00 0.00 0.00 2.77
71 72 1.182385 GCGAACCCCATTGACCCAAA 61.182 55.000 0.00 0.00 0.00 3.28
72 73 1.605165 GCGAACCCCATTGACCCAA 60.605 57.895 0.00 0.00 0.00 4.12
73 74 2.034999 GCGAACCCCATTGACCCA 59.965 61.111 0.00 0.00 0.00 4.51
74 75 2.754254 GGCGAACCCCATTGACCC 60.754 66.667 0.00 0.00 0.00 4.46
101 102 0.882042 CTTGATCATTCGCCCGGGAG 60.882 60.000 29.31 24.31 0.00 4.30
102 103 1.146041 CTTGATCATTCGCCCGGGA 59.854 57.895 29.31 2.74 0.00 5.14
103 104 1.893808 CCTTGATCATTCGCCCGGG 60.894 63.158 19.09 19.09 0.00 5.73
104 105 0.463654 TTCCTTGATCATTCGCCCGG 60.464 55.000 0.00 0.00 0.00 5.73
105 106 0.940126 CTTCCTTGATCATTCGCCCG 59.060 55.000 0.00 0.00 0.00 6.13
106 107 1.312815 CCTTCCTTGATCATTCGCCC 58.687 55.000 0.00 0.00 0.00 6.13
107 108 1.312815 CCCTTCCTTGATCATTCGCC 58.687 55.000 0.00 0.00 0.00 5.54
108 109 1.672881 CACCCTTCCTTGATCATTCGC 59.327 52.381 0.00 0.00 0.00 4.70
109 110 3.266510 TCACCCTTCCTTGATCATTCG 57.733 47.619 0.00 0.00 0.00 3.34
110 111 4.274459 CGAATCACCCTTCCTTGATCATTC 59.726 45.833 0.00 0.00 30.96 2.67
111 112 4.202441 CGAATCACCCTTCCTTGATCATT 58.798 43.478 0.00 0.00 30.96 2.57
112 113 3.200825 ACGAATCACCCTTCCTTGATCAT 59.799 43.478 0.00 0.00 30.96 2.45
113 114 2.571653 ACGAATCACCCTTCCTTGATCA 59.428 45.455 0.00 0.00 30.96 2.92
114 115 3.268023 ACGAATCACCCTTCCTTGATC 57.732 47.619 0.00 0.00 30.96 2.92
115 116 3.610911 GAACGAATCACCCTTCCTTGAT 58.389 45.455 0.00 0.00 33.74 2.57
116 117 2.611971 CGAACGAATCACCCTTCCTTGA 60.612 50.000 0.00 0.00 0.00 3.02
117 118 1.732259 CGAACGAATCACCCTTCCTTG 59.268 52.381 0.00 0.00 0.00 3.61
118 119 1.944430 GCGAACGAATCACCCTTCCTT 60.944 52.381 0.00 0.00 0.00 3.36
119 120 0.391263 GCGAACGAATCACCCTTCCT 60.391 55.000 0.00 0.00 0.00 3.36
120 121 0.391263 AGCGAACGAATCACCCTTCC 60.391 55.000 0.00 0.00 0.00 3.46
121 122 0.721718 CAGCGAACGAATCACCCTTC 59.278 55.000 0.00 0.00 0.00 3.46
122 123 0.673644 CCAGCGAACGAATCACCCTT 60.674 55.000 0.00 0.00 0.00 3.95
123 124 1.079127 CCAGCGAACGAATCACCCT 60.079 57.895 0.00 0.00 0.00 4.34
124 125 2.106683 CCCAGCGAACGAATCACCC 61.107 63.158 0.00 0.00 0.00 4.61
125 126 1.079405 TCCCAGCGAACGAATCACC 60.079 57.895 0.00 0.00 0.00 4.02
126 127 1.696832 GCTCCCAGCGAACGAATCAC 61.697 60.000 0.00 0.00 0.00 3.06
127 128 1.447838 GCTCCCAGCGAACGAATCA 60.448 57.895 0.00 0.00 0.00 2.57
128 129 1.424493 CTGCTCCCAGCGAACGAATC 61.424 60.000 0.00 0.00 46.26 2.52
129 130 1.448540 CTGCTCCCAGCGAACGAAT 60.449 57.895 0.00 0.00 46.26 3.34
130 131 2.048222 CTGCTCCCAGCGAACGAA 60.048 61.111 0.00 0.00 46.26 3.85
144 145 0.748005 TTCGATTGCTAAGGGGCTGC 60.748 55.000 0.00 0.00 0.00 5.25
147 148 2.427095 ACAAATTCGATTGCTAAGGGGC 59.573 45.455 0.00 0.00 33.52 5.80
150 151 6.473455 GGATCAAACAAATTCGATTGCTAAGG 59.527 38.462 0.00 0.00 33.52 2.69
152 153 6.027131 CGGATCAAACAAATTCGATTGCTAA 58.973 36.000 0.00 0.00 33.52 3.09
154 155 4.414852 CGGATCAAACAAATTCGATTGCT 58.585 39.130 0.00 0.00 33.52 3.91
155 156 3.000773 GCGGATCAAACAAATTCGATTGC 60.001 43.478 0.00 0.00 33.52 3.56
157 158 4.082787 AGTGCGGATCAAACAAATTCGATT 60.083 37.500 0.00 0.00 0.00 3.34
170 171 1.689243 CCATGGAGGAGTGCGGATCA 61.689 60.000 5.56 0.00 41.22 2.92
176 177 1.527844 GGATGCCATGGAGGAGTGC 60.528 63.158 18.40 0.00 41.22 4.40
178 179 0.326904 TCTGGATGCCATGGAGGAGT 60.327 55.000 18.40 0.00 41.22 3.85
196 197 2.235016 AGGACTCTCATATCTGGCGTC 58.765 52.381 0.00 0.00 0.00 5.19
197 198 2.373335 AGGACTCTCATATCTGGCGT 57.627 50.000 0.00 0.00 0.00 5.68
208 209 9.444600 TTTACAAACCAATGTAATAGGACTCTC 57.555 33.333 1.19 0.00 43.29 3.20
246 247 7.575343 GCAGGTAAATTATGACCCGTACAAAAA 60.575 37.037 0.00 0.00 36.27 1.94
318 323 8.483758 ACCGGAAGAGTACATAATGTCTTATTT 58.516 33.333 9.46 0.00 0.00 1.40
324 329 4.341520 AGGACCGGAAGAGTACATAATGTC 59.658 45.833 9.46 0.00 0.00 3.06
326 331 4.939052 AGGACCGGAAGAGTACATAATG 57.061 45.455 9.46 0.00 0.00 1.90
335 340 4.571176 GCATAGTAAAAAGGACCGGAAGAG 59.429 45.833 9.46 0.00 0.00 2.85
337 342 4.258543 TGCATAGTAAAAAGGACCGGAAG 58.741 43.478 9.46 0.00 0.00 3.46
338 343 4.289238 TGCATAGTAAAAAGGACCGGAA 57.711 40.909 9.46 0.00 0.00 4.30
341 346 6.537301 TCTTACATGCATAGTAAAAAGGACCG 59.463 38.462 16.95 7.91 31.66 4.79
345 350 9.113838 ACAGATCTTACATGCATAGTAAAAAGG 57.886 33.333 16.95 9.55 31.66 3.11
359 364 6.070881 AGCTTGACTTCAGACAGATCTTACAT 60.071 38.462 0.00 0.00 30.42 2.29
368 373 4.889832 AACAAAGCTTGACTTCAGACAG 57.110 40.909 0.00 0.00 37.75 3.51
371 376 7.120579 TCAAACTTAACAAAGCTTGACTTCAGA 59.879 33.333 0.00 0.00 37.75 3.27
373 378 7.027161 GTCAAACTTAACAAAGCTTGACTTCA 58.973 34.615 19.58 0.00 45.39 3.02
379 384 6.331170 GTTGGTCAAACTTAACAAAGCTTG 57.669 37.500 0.00 0.00 35.75 4.01
518 523 9.480053 CAAATGTCATAAAGTTTGACCATCTTT 57.520 29.630 0.00 0.00 42.25 2.52
541 546 8.447833 CGTATGTAAGATTTGTCTAAAGCCAAA 58.552 33.333 0.00 0.00 32.75 3.28
542 547 7.065324 CCGTATGTAAGATTTGTCTAAAGCCAA 59.935 37.037 0.00 0.00 32.75 4.52
543 548 6.537301 CCGTATGTAAGATTTGTCTAAAGCCA 59.463 38.462 0.00 0.00 32.75 4.75
544 549 6.759827 TCCGTATGTAAGATTTGTCTAAAGCC 59.240 38.462 0.00 0.00 32.75 4.35
545 550 7.491696 ACTCCGTATGTAAGATTTGTCTAAAGC 59.508 37.037 0.00 0.00 32.50 3.51
546 551 8.928270 ACTCCGTATGTAAGATTTGTCTAAAG 57.072 34.615 0.00 0.00 0.00 1.85
548 553 9.399797 TCTACTCCGTATGTAAGATTTGTCTAA 57.600 33.333 0.00 0.00 0.00 2.10
549 554 8.969260 TCTACTCCGTATGTAAGATTTGTCTA 57.031 34.615 0.00 0.00 0.00 2.59
550 555 7.876936 TCTACTCCGTATGTAAGATTTGTCT 57.123 36.000 0.00 0.00 0.00 3.41
551 556 8.922058 TTTCTACTCCGTATGTAAGATTTGTC 57.078 34.615 0.00 0.00 0.00 3.18
552 557 7.980099 CCTTTCTACTCCGTATGTAAGATTTGT 59.020 37.037 0.00 0.00 0.00 2.83
553 558 8.195436 TCCTTTCTACTCCGTATGTAAGATTTG 58.805 37.037 0.00 0.00 0.00 2.32
554 559 8.196103 GTCCTTTCTACTCCGTATGTAAGATTT 58.804 37.037 0.00 0.00 0.00 2.17
555 560 7.560626 AGTCCTTTCTACTCCGTATGTAAGATT 59.439 37.037 0.00 0.00 0.00 2.40
556 561 7.013464 CAGTCCTTTCTACTCCGTATGTAAGAT 59.987 40.741 0.00 0.00 0.00 2.40
557 562 6.318144 CAGTCCTTTCTACTCCGTATGTAAGA 59.682 42.308 0.00 0.00 0.00 2.10
558 563 6.459848 CCAGTCCTTTCTACTCCGTATGTAAG 60.460 46.154 0.00 0.00 0.00 2.34
559 564 5.359009 CCAGTCCTTTCTACTCCGTATGTAA 59.641 44.000 0.00 0.00 0.00 2.41
560 565 4.885907 CCAGTCCTTTCTACTCCGTATGTA 59.114 45.833 0.00 0.00 0.00 2.29
561 566 3.700038 CCAGTCCTTTCTACTCCGTATGT 59.300 47.826 0.00 0.00 0.00 2.29
562 567 3.952323 TCCAGTCCTTTCTACTCCGTATG 59.048 47.826 0.00 0.00 0.00 2.39
563 568 4.246712 TCCAGTCCTTTCTACTCCGTAT 57.753 45.455 0.00 0.00 0.00 3.06
564 569 3.726557 TCCAGTCCTTTCTACTCCGTA 57.273 47.619 0.00 0.00 0.00 4.02
565 570 2.599408 TCCAGTCCTTTCTACTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
566 571 3.447586 TCAATCCAGTCCTTTCTACTCCG 59.552 47.826 0.00 0.00 0.00 4.63
567 572 4.468153 ACTCAATCCAGTCCTTTCTACTCC 59.532 45.833 0.00 0.00 0.00 3.85
568 573 5.669164 ACTCAATCCAGTCCTTTCTACTC 57.331 43.478 0.00 0.00 0.00 2.59
569 574 7.741554 AATACTCAATCCAGTCCTTTCTACT 57.258 36.000 0.00 0.00 0.00 2.57
570 575 7.281100 CCAAATACTCAATCCAGTCCTTTCTAC 59.719 40.741 0.00 0.00 0.00 2.59
571 576 7.182026 TCCAAATACTCAATCCAGTCCTTTCTA 59.818 37.037 0.00 0.00 0.00 2.10
572 577 6.012508 TCCAAATACTCAATCCAGTCCTTTCT 60.013 38.462 0.00 0.00 0.00 2.52
573 578 6.180472 TCCAAATACTCAATCCAGTCCTTTC 58.820 40.000 0.00 0.00 0.00 2.62
574 579 6.139679 TCCAAATACTCAATCCAGTCCTTT 57.860 37.500 0.00 0.00 0.00 3.11
575 580 5.779241 TCCAAATACTCAATCCAGTCCTT 57.221 39.130 0.00 0.00 0.00 3.36
576 581 5.983333 ATCCAAATACTCAATCCAGTCCT 57.017 39.130 0.00 0.00 0.00 3.85
577 582 6.931840 GTCTATCCAAATACTCAATCCAGTCC 59.068 42.308 0.00 0.00 0.00 3.85
578 583 6.642950 CGTCTATCCAAATACTCAATCCAGTC 59.357 42.308 0.00 0.00 0.00 3.51
579 584 6.098409 ACGTCTATCCAAATACTCAATCCAGT 59.902 38.462 0.00 0.00 0.00 4.00
580 585 6.422100 CACGTCTATCCAAATACTCAATCCAG 59.578 42.308 0.00 0.00 0.00 3.86
581 586 6.097696 TCACGTCTATCCAAATACTCAATCCA 59.902 38.462 0.00 0.00 0.00 3.41
582 587 6.513180 TCACGTCTATCCAAATACTCAATCC 58.487 40.000 0.00 0.00 0.00 3.01
583 588 7.380065 GTCTCACGTCTATCCAAATACTCAATC 59.620 40.741 0.00 0.00 0.00 2.67
584 589 7.147897 TGTCTCACGTCTATCCAAATACTCAAT 60.148 37.037 0.00 0.00 0.00 2.57
585 590 6.152154 TGTCTCACGTCTATCCAAATACTCAA 59.848 38.462 0.00 0.00 0.00 3.02
586 591 5.650703 TGTCTCACGTCTATCCAAATACTCA 59.349 40.000 0.00 0.00 0.00 3.41
587 592 6.132791 TGTCTCACGTCTATCCAAATACTC 57.867 41.667 0.00 0.00 0.00 2.59
588 593 6.153000 AGTTGTCTCACGTCTATCCAAATACT 59.847 38.462 0.00 0.00 0.00 2.12
589 594 6.253727 CAGTTGTCTCACGTCTATCCAAATAC 59.746 42.308 0.00 0.00 0.00 1.89
590 595 6.152154 TCAGTTGTCTCACGTCTATCCAAATA 59.848 38.462 0.00 0.00 0.00 1.40
591 596 5.047306 TCAGTTGTCTCACGTCTATCCAAAT 60.047 40.000 0.00 0.00 0.00 2.32
592 597 4.279922 TCAGTTGTCTCACGTCTATCCAAA 59.720 41.667 0.00 0.00 0.00 3.28
593 598 3.824443 TCAGTTGTCTCACGTCTATCCAA 59.176 43.478 0.00 0.00 0.00 3.53
594 599 3.418047 TCAGTTGTCTCACGTCTATCCA 58.582 45.455 0.00 0.00 0.00 3.41
595 600 4.436242 TTCAGTTGTCTCACGTCTATCC 57.564 45.455 0.00 0.00 0.00 2.59
596 601 5.289675 CCAATTCAGTTGTCTCACGTCTATC 59.710 44.000 0.00 0.00 36.01 2.08
597 602 5.171476 CCAATTCAGTTGTCTCACGTCTAT 58.829 41.667 0.00 0.00 36.01 1.98
598 603 4.038763 ACCAATTCAGTTGTCTCACGTCTA 59.961 41.667 0.00 0.00 36.01 2.59
599 604 3.181465 ACCAATTCAGTTGTCTCACGTCT 60.181 43.478 0.00 0.00 36.01 4.18
600 605 3.131396 ACCAATTCAGTTGTCTCACGTC 58.869 45.455 0.00 0.00 36.01 4.34
601 606 3.194005 ACCAATTCAGTTGTCTCACGT 57.806 42.857 0.00 0.00 36.01 4.49
602 607 4.552166 AAACCAATTCAGTTGTCTCACG 57.448 40.909 0.00 0.00 36.01 4.35
603 608 6.438763 CCTAAAACCAATTCAGTTGTCTCAC 58.561 40.000 0.00 0.00 36.01 3.51
604 609 5.534654 CCCTAAAACCAATTCAGTTGTCTCA 59.465 40.000 0.00 0.00 36.01 3.27
605 610 5.768164 TCCCTAAAACCAATTCAGTTGTCTC 59.232 40.000 0.00 0.00 36.01 3.36
606 611 5.701224 TCCCTAAAACCAATTCAGTTGTCT 58.299 37.500 0.00 0.00 36.01 3.41
607 612 6.399639 TTCCCTAAAACCAATTCAGTTGTC 57.600 37.500 0.00 0.00 36.01 3.18
608 613 6.800072 TTTCCCTAAAACCAATTCAGTTGT 57.200 33.333 0.00 0.00 36.01 3.32
609 614 7.930865 TGATTTTCCCTAAAACCAATTCAGTTG 59.069 33.333 0.00 0.00 37.41 3.16
610 615 8.028652 TGATTTTCCCTAAAACCAATTCAGTT 57.971 30.769 0.00 0.00 37.41 3.16
611 616 7.290014 ACTGATTTTCCCTAAAACCAATTCAGT 59.710 33.333 9.38 9.38 41.07 3.41
612 617 7.599998 CACTGATTTTCCCTAAAACCAATTCAG 59.400 37.037 8.50 8.50 39.92 3.02
635 640 7.456725 TCCATCTTTGAATTTTCTCTCTCACT 58.543 34.615 0.00 0.00 0.00 3.41
642 647 8.115490 TCTTCCTTCCATCTTTGAATTTTCTC 57.885 34.615 0.00 0.00 0.00 2.87
643 648 8.482852 TTCTTCCTTCCATCTTTGAATTTTCT 57.517 30.769 0.00 0.00 0.00 2.52
644 649 9.546428 TTTTCTTCCTTCCATCTTTGAATTTTC 57.454 29.630 0.00 0.00 0.00 2.29
649 654 8.806146 CCTTATTTTCTTCCTTCCATCTTTGAA 58.194 33.333 0.00 0.00 0.00 2.69
666 671 3.693085 GACGTCCCCCTTTCCTTATTTTC 59.307 47.826 3.51 0.00 0.00 2.29
833 840 2.554893 GGAGATTTTTGCGTACCACCAA 59.445 45.455 0.00 0.00 0.00 3.67
889 896 1.478631 TCTGTCATGGAGCGTGAGAT 58.521 50.000 0.00 0.00 29.40 2.75
890 897 1.135721 CATCTGTCATGGAGCGTGAGA 59.864 52.381 0.00 0.00 29.40 3.27
896 904 2.005451 GTGTGTCATCTGTCATGGAGC 58.995 52.381 0.00 0.00 0.00 4.70
904 912 2.355756 GTGCTTTGTGTGTGTCATCTGT 59.644 45.455 0.00 0.00 0.00 3.41
905 913 2.287188 GGTGCTTTGTGTGTGTCATCTG 60.287 50.000 0.00 0.00 0.00 2.90
906 914 1.949525 GGTGCTTTGTGTGTGTCATCT 59.050 47.619 0.00 0.00 0.00 2.90
907 915 1.334059 CGGTGCTTTGTGTGTGTCATC 60.334 52.381 0.00 0.00 0.00 2.92
908 916 0.662619 CGGTGCTTTGTGTGTGTCAT 59.337 50.000 0.00 0.00 0.00 3.06
909 917 0.391793 TCGGTGCTTTGTGTGTGTCA 60.392 50.000 0.00 0.00 0.00 3.58
910 918 0.027586 GTCGGTGCTTTGTGTGTGTC 59.972 55.000 0.00 0.00 0.00 3.67
911 919 1.373590 GGTCGGTGCTTTGTGTGTGT 61.374 55.000 0.00 0.00 0.00 3.72
912 920 1.095228 AGGTCGGTGCTTTGTGTGTG 61.095 55.000 0.00 0.00 0.00 3.82
971 979 6.262273 TGAGTAACTTCTTGATTGGTTTGGTC 59.738 38.462 0.00 0.00 0.00 4.02
972 980 6.126409 TGAGTAACTTCTTGATTGGTTTGGT 58.874 36.000 0.00 0.00 0.00 3.67
993 1001 2.119655 GCTCAGGGCCATTGCTGAG 61.120 63.158 24.65 24.65 40.78 3.35
1005 1013 2.169789 CATCGCGGTTCTGCTCAGG 61.170 63.158 6.13 0.00 0.00 3.86
1117 1125 4.660938 AAAAGCCTCCGCCGCCTT 62.661 61.111 0.00 0.00 34.57 4.35
1427 1435 3.335356 ATCTTGTCGCTGGGCTGGG 62.335 63.158 0.00 0.00 0.00 4.45
1434 1442 1.057822 CGCGTTGATCTTGTCGCTG 59.942 57.895 16.73 10.06 45.25 5.18
1492 1500 1.003233 GGTCTTTCTTGCCCTCGCT 60.003 57.895 0.00 0.00 35.36 4.93
1493 1501 2.041115 GGGTCTTTCTTGCCCTCGC 61.041 63.158 0.00 0.00 39.31 5.03
1579 1587 1.673329 GGTCTCTTTCTTGTCGGGAGC 60.673 57.143 0.00 0.00 0.00 4.70
1672 1684 1.807139 ACGCTACATGCATGTGTGAA 58.193 45.000 36.72 19.45 41.89 3.18
1673 1685 2.267426 GTACGCTACATGCATGTGTGA 58.733 47.619 36.72 19.80 41.89 3.58
1674 1686 1.006079 CGTACGCTACATGCATGTGTG 60.006 52.381 36.72 30.89 41.89 3.82
1676 1688 0.043053 GCGTACGCTACATGCATGTG 60.043 55.000 36.72 26.91 41.89 3.21
1677 1689 1.151777 GGCGTACGCTACATGCATGT 61.152 55.000 36.24 33.20 43.06 3.21
1678 1690 1.564622 GGCGTACGCTACATGCATG 59.435 57.895 36.24 25.09 43.06 4.06
1679 1691 1.594293 GGGCGTACGCTACATGCAT 60.594 57.895 36.24 0.00 43.06 3.96
1681 1693 2.202824 TGGGCGTACGCTACATGC 60.203 61.111 36.24 20.16 41.60 4.06
1682 1694 0.529773 ATGTGGGCGTACGCTACATG 60.530 55.000 37.75 9.40 42.41 3.21
1683 1695 0.529773 CATGTGGGCGTACGCTACAT 60.530 55.000 35.46 35.46 43.63 2.29
1684 1696 1.153726 CATGTGGGCGTACGCTACA 60.154 57.895 34.72 34.72 40.28 2.74
1685 1697 2.522638 GCATGTGGGCGTACGCTAC 61.523 63.158 36.24 31.79 41.60 3.58
1686 1698 2.202824 GCATGTGGGCGTACGCTA 60.203 61.111 36.24 23.99 41.60 4.26
1687 1699 3.892740 TTGCATGTGGGCGTACGCT 62.893 57.895 36.24 16.53 41.60 5.07
1688 1700 2.760159 ATTGCATGTGGGCGTACGC 61.760 57.895 31.54 31.54 41.06 4.42
1689 1701 1.062365 CATTGCATGTGGGCGTACG 59.938 57.895 11.84 11.84 36.28 3.67
1690 1702 1.226660 GCATTGCATGTGGGCGTAC 60.227 57.895 3.15 0.00 36.28 3.67
1691 1703 1.676967 TGCATTGCATGTGGGCGTA 60.677 52.632 7.38 0.00 36.28 4.42
1692 1704 2.990395 TGCATTGCATGTGGGCGT 60.990 55.556 7.38 0.00 36.28 5.68
1859 1872 9.347934 CCGTGTAAGATCAATGATATTAGACTC 57.652 37.037 25.03 12.74 37.64 3.36
1861 1874 9.347934 CTCCGTGTAAGATCAATGATATTAGAC 57.652 37.037 20.89 20.89 36.96 2.59
1865 1878 9.429359 GAATCTCCGTGTAAGATCAATGATATT 57.571 33.333 8.24 8.24 32.29 1.28
1885 1980 9.557061 AAAAGGGAAAATACCTATACGAATCTC 57.443 33.333 0.00 0.00 37.35 2.75
1922 2021 3.988517 GTGACTCAACGAAGGGTAAAGAG 59.011 47.826 0.00 0.00 0.00 2.85
1923 2022 3.640029 AGTGACTCAACGAAGGGTAAAGA 59.360 43.478 0.00 0.00 0.00 2.52
1924 2023 3.991367 AGTGACTCAACGAAGGGTAAAG 58.009 45.455 0.00 0.00 0.00 1.85
1935 2034 9.640963 AGTTATTGTACATCTAAGTGACTCAAC 57.359 33.333 0.00 0.00 0.00 3.18
1988 2087 7.730332 GGAATGGAGGGAGTATAATTTTGGATT 59.270 37.037 0.00 0.00 0.00 3.01
1990 2089 6.392842 AGGAATGGAGGGAGTATAATTTTGGA 59.607 38.462 0.00 0.00 0.00 3.53
2016 2115 8.909923 GTGCCAAAAACTATACACCCTATATTT 58.090 33.333 0.00 0.00 0.00 1.40
2017 2116 7.227910 CGTGCCAAAAACTATACACCCTATATT 59.772 37.037 0.00 0.00 0.00 1.28
2018 2117 6.708949 CGTGCCAAAAACTATACACCCTATAT 59.291 38.462 0.00 0.00 0.00 0.86
2019 2118 6.050432 CGTGCCAAAAACTATACACCCTATA 58.950 40.000 0.00 0.00 0.00 1.31
2020 2119 4.879545 CGTGCCAAAAACTATACACCCTAT 59.120 41.667 0.00 0.00 0.00 2.57
2021 2120 4.255301 CGTGCCAAAAACTATACACCCTA 58.745 43.478 0.00 0.00 0.00 3.53
2022 2121 3.078837 CGTGCCAAAAACTATACACCCT 58.921 45.455 0.00 0.00 0.00 4.34
2023 2122 2.162809 CCGTGCCAAAAACTATACACCC 59.837 50.000 0.00 0.00 0.00 4.61
2024 2123 3.075884 TCCGTGCCAAAAACTATACACC 58.924 45.455 0.00 0.00 0.00 4.16
2025 2124 4.752661 TTCCGTGCCAAAAACTATACAC 57.247 40.909 0.00 0.00 0.00 2.90
2026 2125 5.968528 ATTTCCGTGCCAAAAACTATACA 57.031 34.783 0.00 0.00 0.00 2.29
2027 2126 8.745464 TTTAATTTCCGTGCCAAAAACTATAC 57.255 30.769 0.00 0.00 0.00 1.47
2028 2127 8.794553 TCTTTAATTTCCGTGCCAAAAACTATA 58.205 29.630 0.00 0.00 0.00 1.31
2029 2128 7.662897 TCTTTAATTTCCGTGCCAAAAACTAT 58.337 30.769 0.00 0.00 0.00 2.12
2030 2129 7.040473 TCTTTAATTTCCGTGCCAAAAACTA 57.960 32.000 0.00 0.00 0.00 2.24
2031 2130 5.908341 TCTTTAATTTCCGTGCCAAAAACT 58.092 33.333 0.00 0.00 0.00 2.66
2032 2131 6.415702 GTTCTTTAATTTCCGTGCCAAAAAC 58.584 36.000 0.00 0.00 0.00 2.43
2033 2132 5.232414 CGTTCTTTAATTTCCGTGCCAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
2034 2133 4.740695 CGTTCTTTAATTTCCGTGCCAAAA 59.259 37.500 0.00 0.00 0.00 2.44
2035 2134 4.291783 CGTTCTTTAATTTCCGTGCCAAA 58.708 39.130 0.00 0.00 0.00 3.28
2036 2135 3.854045 GCGTTCTTTAATTTCCGTGCCAA 60.854 43.478 0.00 0.00 0.00 4.52
2037 2136 2.350964 GCGTTCTTTAATTTCCGTGCCA 60.351 45.455 0.00 0.00 0.00 4.92
2038 2137 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
2039 2138 2.655001 GTGCGTTCTTTAATTTCCGTGC 59.345 45.455 0.00 0.00 0.00 5.34
2040 2139 3.879427 TGTGCGTTCTTTAATTTCCGTG 58.121 40.909 0.00 0.00 0.00 4.94
2041 2140 4.472286 CATGTGCGTTCTTTAATTTCCGT 58.528 39.130 0.00 0.00 0.00 4.69
2042 2141 3.851403 CCATGTGCGTTCTTTAATTTCCG 59.149 43.478 0.00 0.00 0.00 4.30
2043 2142 5.054390 TCCATGTGCGTTCTTTAATTTCC 57.946 39.130 0.00 0.00 0.00 3.13
2044 2143 5.095490 CCTCCATGTGCGTTCTTTAATTTC 58.905 41.667 0.00 0.00 0.00 2.17
2045 2144 4.082245 CCCTCCATGTGCGTTCTTTAATTT 60.082 41.667 0.00 0.00 0.00 1.82
2046 2145 3.443681 CCCTCCATGTGCGTTCTTTAATT 59.556 43.478 0.00 0.00 0.00 1.40
2047 2146 3.016736 CCCTCCATGTGCGTTCTTTAAT 58.983 45.455 0.00 0.00 0.00 1.40
2048 2147 2.039216 TCCCTCCATGTGCGTTCTTTAA 59.961 45.455 0.00 0.00 0.00 1.52
2049 2148 1.626321 TCCCTCCATGTGCGTTCTTTA 59.374 47.619 0.00 0.00 0.00 1.85
2050 2149 0.400213 TCCCTCCATGTGCGTTCTTT 59.600 50.000 0.00 0.00 0.00 2.52
2051 2150 0.400213 TTCCCTCCATGTGCGTTCTT 59.600 50.000 0.00 0.00 0.00 2.52
2052 2151 0.400213 TTTCCCTCCATGTGCGTTCT 59.600 50.000 0.00 0.00 0.00 3.01
2053 2152 1.243902 TTTTCCCTCCATGTGCGTTC 58.756 50.000 0.00 0.00 0.00 3.95
2054 2153 1.923356 ATTTTCCCTCCATGTGCGTT 58.077 45.000 0.00 0.00 0.00 4.84
2055 2154 1.923356 AATTTTCCCTCCATGTGCGT 58.077 45.000 0.00 0.00 0.00 5.24
2056 2155 2.230992 TGAAATTTTCCCTCCATGTGCG 59.769 45.455 6.68 0.00 0.00 5.34
2057 2156 3.006752 TGTGAAATTTTCCCTCCATGTGC 59.993 43.478 6.68 0.00 0.00 4.57
2058 2157 4.870123 TGTGAAATTTTCCCTCCATGTG 57.130 40.909 6.68 0.00 0.00 3.21
2059 2158 4.901250 ACTTGTGAAATTTTCCCTCCATGT 59.099 37.500 6.68 4.54 0.00 3.21
2060 2159 5.473066 ACTTGTGAAATTTTCCCTCCATG 57.527 39.130 6.68 0.00 0.00 3.66
2061 2160 6.499106 AAACTTGTGAAATTTTCCCTCCAT 57.501 33.333 6.68 0.00 0.00 3.41
2062 2161 5.948742 AAACTTGTGAAATTTTCCCTCCA 57.051 34.783 6.68 0.00 0.00 3.86
2063 2162 5.527214 CCAAAACTTGTGAAATTTTCCCTCC 59.473 40.000 6.68 0.00 0.00 4.30
2064 2163 5.527214 CCCAAAACTTGTGAAATTTTCCCTC 59.473 40.000 6.68 0.00 0.00 4.30
2065 2164 5.436175 CCCAAAACTTGTGAAATTTTCCCT 58.564 37.500 6.68 0.00 0.00 4.20
2066 2165 4.036262 GCCCAAAACTTGTGAAATTTTCCC 59.964 41.667 6.68 0.00 0.00 3.97
2067 2166 4.260579 CGCCCAAAACTTGTGAAATTTTCC 60.261 41.667 6.68 0.00 0.00 3.13
2068 2167 4.568760 TCGCCCAAAACTTGTGAAATTTTC 59.431 37.500 2.05 2.05 0.00 2.29
2069 2168 4.508662 TCGCCCAAAACTTGTGAAATTTT 58.491 34.783 0.00 0.00 0.00 1.82
2070 2169 4.119136 CTCGCCCAAAACTTGTGAAATTT 58.881 39.130 0.00 0.00 0.00 1.82
2071 2170 3.383185 TCTCGCCCAAAACTTGTGAAATT 59.617 39.130 0.00 0.00 0.00 1.82
2072 2171 2.955660 TCTCGCCCAAAACTTGTGAAAT 59.044 40.909 0.00 0.00 0.00 2.17
2073 2172 2.370349 TCTCGCCCAAAACTTGTGAAA 58.630 42.857 0.00 0.00 0.00 2.69
2074 2173 2.045561 TCTCGCCCAAAACTTGTGAA 57.954 45.000 0.00 0.00 0.00 3.18
2075 2174 2.270352 ATCTCGCCCAAAACTTGTGA 57.730 45.000 0.00 0.00 0.00 3.58
2076 2175 3.252215 TGTAATCTCGCCCAAAACTTGTG 59.748 43.478 0.00 0.00 0.00 3.33
2077 2176 3.252458 GTGTAATCTCGCCCAAAACTTGT 59.748 43.478 0.00 0.00 0.00 3.16
2078 2177 3.365969 GGTGTAATCTCGCCCAAAACTTG 60.366 47.826 0.00 0.00 32.43 3.16
2079 2178 2.817844 GGTGTAATCTCGCCCAAAACTT 59.182 45.455 0.00 0.00 32.43 2.66
2080 2179 2.039879 AGGTGTAATCTCGCCCAAAACT 59.960 45.455 0.00 0.00 38.61 2.66
2081 2180 2.433436 AGGTGTAATCTCGCCCAAAAC 58.567 47.619 0.00 0.00 38.61 2.43
2082 2181 2.871096 AGGTGTAATCTCGCCCAAAA 57.129 45.000 0.00 0.00 38.61 2.44
2083 2182 3.262405 AGTTAGGTGTAATCTCGCCCAAA 59.738 43.478 0.00 0.00 38.61 3.28
2084 2183 2.835764 AGTTAGGTGTAATCTCGCCCAA 59.164 45.455 0.00 0.00 38.61 4.12
2085 2184 2.463752 AGTTAGGTGTAATCTCGCCCA 58.536 47.619 0.00 0.00 38.61 5.36
2086 2185 4.660789 TTAGTTAGGTGTAATCTCGCCC 57.339 45.455 0.00 0.00 38.61 6.13
2087 2186 6.200475 GTCAATTAGTTAGGTGTAATCTCGCC 59.800 42.308 0.00 0.00 38.17 5.54
2088 2187 6.755141 TGTCAATTAGTTAGGTGTAATCTCGC 59.245 38.462 0.00 0.00 0.00 5.03
2089 2188 8.755941 CATGTCAATTAGTTAGGTGTAATCTCG 58.244 37.037 0.00 0.00 0.00 4.04
2090 2189 9.817809 TCATGTCAATTAGTTAGGTGTAATCTC 57.182 33.333 0.00 0.00 0.00 2.75
2091 2190 9.823647 CTCATGTCAATTAGTTAGGTGTAATCT 57.176 33.333 0.00 0.00 0.00 2.40
2092 2191 9.817809 TCTCATGTCAATTAGTTAGGTGTAATC 57.182 33.333 0.00 0.00 0.00 1.75
2096 2195 8.918202 TTTTCTCATGTCAATTAGTTAGGTGT 57.082 30.769 0.00 0.00 0.00 4.16
2104 2203 9.294030 GCACCTTTATTTTCTCATGTCAATTAG 57.706 33.333 0.00 0.00 0.00 1.73
2105 2204 9.023962 AGCACCTTTATTTTCTCATGTCAATTA 57.976 29.630 0.00 0.00 0.00 1.40
2106 2205 7.899973 AGCACCTTTATTTTCTCATGTCAATT 58.100 30.769 0.00 0.00 0.00 2.32
2107 2206 7.472334 AGCACCTTTATTTTCTCATGTCAAT 57.528 32.000 0.00 0.00 0.00 2.57
2108 2207 6.899393 AGCACCTTTATTTTCTCATGTCAA 57.101 33.333 0.00 0.00 0.00 3.18
2109 2208 6.680810 CAAGCACCTTTATTTTCTCATGTCA 58.319 36.000 0.00 0.00 0.00 3.58
2110 2209 5.574443 GCAAGCACCTTTATTTTCTCATGTC 59.426 40.000 0.00 0.00 0.00 3.06
2111 2210 5.244626 AGCAAGCACCTTTATTTTCTCATGT 59.755 36.000 0.00 0.00 0.00 3.21
2112 2211 5.717119 AGCAAGCACCTTTATTTTCTCATG 58.283 37.500 0.00 0.00 0.00 3.07
2113 2212 5.990120 AGCAAGCACCTTTATTTTCTCAT 57.010 34.783 0.00 0.00 0.00 2.90
2114 2213 5.301551 TCAAGCAAGCACCTTTATTTTCTCA 59.698 36.000 0.00 0.00 0.00 3.27
2115 2214 5.772521 TCAAGCAAGCACCTTTATTTTCTC 58.227 37.500 0.00 0.00 0.00 2.87
2116 2215 5.789643 TCAAGCAAGCACCTTTATTTTCT 57.210 34.783 0.00 0.00 0.00 2.52
2117 2216 9.801873 TTATATCAAGCAAGCACCTTTATTTTC 57.198 29.630 0.00 0.00 0.00 2.29
2118 2217 9.807649 CTTATATCAAGCAAGCACCTTTATTTT 57.192 29.630 0.00 0.00 0.00 1.82
2119 2218 8.416329 CCTTATATCAAGCAAGCACCTTTATTT 58.584 33.333 0.00 0.00 0.00 1.40
2120 2219 7.779798 TCCTTATATCAAGCAAGCACCTTTATT 59.220 33.333 0.00 0.00 0.00 1.40
2121 2220 7.290061 TCCTTATATCAAGCAAGCACCTTTAT 58.710 34.615 0.00 0.00 0.00 1.40
2122 2221 6.658849 TCCTTATATCAAGCAAGCACCTTTA 58.341 36.000 0.00 0.00 0.00 1.85
2123 2222 5.509498 TCCTTATATCAAGCAAGCACCTTT 58.491 37.500 0.00 0.00 0.00 3.11
2124 2223 5.116084 TCCTTATATCAAGCAAGCACCTT 57.884 39.130 0.00 0.00 0.00 3.50
2125 2224 4.778213 TCCTTATATCAAGCAAGCACCT 57.222 40.909 0.00 0.00 0.00 4.00
2126 2225 6.183360 ACAATTCCTTATATCAAGCAAGCACC 60.183 38.462 0.00 0.00 0.00 5.01
2127 2226 6.799512 ACAATTCCTTATATCAAGCAAGCAC 58.200 36.000 0.00 0.00 0.00 4.40
2128 2227 8.518430 TTACAATTCCTTATATCAAGCAAGCA 57.482 30.769 0.00 0.00 0.00 3.91
2129 2228 9.237846 GTTTACAATTCCTTATATCAAGCAAGC 57.762 33.333 0.00 0.00 0.00 4.01
2165 2264 5.735070 GCACCAGACGTTTGGATAACTTTTT 60.735 40.000 30.15 2.68 40.87 1.94
2166 2265 4.261447 GCACCAGACGTTTGGATAACTTTT 60.261 41.667 30.15 3.43 40.87 2.27
2167 2266 3.252458 GCACCAGACGTTTGGATAACTTT 59.748 43.478 30.15 4.20 40.87 2.66
2168 2267 2.812011 GCACCAGACGTTTGGATAACTT 59.188 45.455 30.15 4.96 40.87 2.66
2169 2268 2.224426 TGCACCAGACGTTTGGATAACT 60.224 45.455 30.15 5.73 40.87 2.24
2170 2269 2.147958 TGCACCAGACGTTTGGATAAC 58.852 47.619 30.15 15.97 40.87 1.89
2171 2270 2.550606 GTTGCACCAGACGTTTGGATAA 59.449 45.455 30.15 17.79 40.87 1.75
2172 2271 2.147958 GTTGCACCAGACGTTTGGATA 58.852 47.619 30.15 13.26 40.87 2.59
2173 2272 0.951558 GTTGCACCAGACGTTTGGAT 59.048 50.000 30.15 12.55 40.87 3.41
2174 2273 1.433053 CGTTGCACCAGACGTTTGGA 61.433 55.000 30.15 6.51 40.87 3.53
2175 2274 1.010125 CGTTGCACCAGACGTTTGG 60.010 57.895 22.75 22.75 44.09 3.28
2176 2275 1.654137 GCGTTGCACCAGACGTTTG 60.654 57.895 10.10 0.00 41.10 2.93
2177 2276 1.649390 TTGCGTTGCACCAGACGTTT 61.649 50.000 10.10 0.00 38.71 3.60
2178 2277 1.444119 ATTGCGTTGCACCAGACGTT 61.444 50.000 10.10 0.00 38.71 3.99
2179 2278 0.601576 TATTGCGTTGCACCAGACGT 60.602 50.000 10.10 0.00 38.71 4.34
2180 2279 0.179225 GTATTGCGTTGCACCAGACG 60.179 55.000 4.31 4.31 38.71 4.18
2181 2280 0.871722 TGTATTGCGTTGCACCAGAC 59.128 50.000 0.00 0.00 38.71 3.51
2182 2281 0.871722 GTGTATTGCGTTGCACCAGA 59.128 50.000 0.00 0.00 38.71 3.86
2183 2282 3.383026 GTGTATTGCGTTGCACCAG 57.617 52.632 0.00 0.00 38.71 4.00
2185 2284 4.859784 GGTGTATTGCGTTGCACC 57.140 55.556 9.58 9.58 43.52 5.01
2186 2285 3.757745 ATAAGGTGTATTGCGTTGCAC 57.242 42.857 0.00 0.00 38.71 4.57
2187 2286 6.443934 AAATATAAGGTGTATTGCGTTGCA 57.556 33.333 0.00 0.00 36.47 4.08
2188 2287 5.619607 CGAAATATAAGGTGTATTGCGTTGC 59.380 40.000 0.00 0.00 36.36 4.17
2189 2288 6.018588 TCCGAAATATAAGGTGTATTGCGTTG 60.019 38.462 5.76 0.00 38.38 4.10
2190 2289 6.050432 TCCGAAATATAAGGTGTATTGCGTT 58.950 36.000 5.76 0.00 38.38 4.84
2191 2290 5.603596 TCCGAAATATAAGGTGTATTGCGT 58.396 37.500 5.76 0.00 38.38 5.24
2192 2291 5.694910 ACTCCGAAATATAAGGTGTATTGCG 59.305 40.000 0.00 0.00 39.29 4.85
2193 2292 7.492352 AACTCCGAAATATAAGGTGTATTGC 57.508 36.000 0.00 0.00 32.27 3.56
2196 2295 9.901172 AGAAAAACTCCGAAATATAAGGTGTAT 57.099 29.630 0.00 0.00 32.27 2.29
2197 2296 9.374838 GAGAAAAACTCCGAAATATAAGGTGTA 57.625 33.333 0.00 0.00 39.53 2.90
2198 2297 7.881232 TGAGAAAAACTCCGAAATATAAGGTGT 59.119 33.333 0.00 0.00 44.34 4.16
2199 2298 8.263940 TGAGAAAAACTCCGAAATATAAGGTG 57.736 34.615 0.00 0.00 44.34 4.00
2200 2299 8.857694 TTGAGAAAAACTCCGAAATATAAGGT 57.142 30.769 0.00 0.00 44.34 3.50
2210 2309 9.496873 TGTATAGATTTTTGAGAAAAACTCCGA 57.503 29.630 0.00 0.00 42.57 4.55
2211 2310 9.543018 GTGTATAGATTTTTGAGAAAAACTCCG 57.457 33.333 0.00 0.00 42.57 4.63
2212 2311 9.841880 GGTGTATAGATTTTTGAGAAAAACTCC 57.158 33.333 0.00 0.00 42.57 3.85
2229 2328 9.877222 TCTGTTCCTTGATATAAGGTGTATAGA 57.123 33.333 5.67 4.06 38.55 1.98
2231 2330 9.090103 CCTCTGTTCCTTGATATAAGGTGTATA 57.910 37.037 5.67 0.00 38.55 1.47
2232 2331 7.016661 CCCTCTGTTCCTTGATATAAGGTGTAT 59.983 40.741 5.67 0.00 38.55 2.29
2233 2332 6.326583 CCCTCTGTTCCTTGATATAAGGTGTA 59.673 42.308 5.67 0.00 38.55 2.90
2234 2333 5.131142 CCCTCTGTTCCTTGATATAAGGTGT 59.869 44.000 5.67 0.00 38.55 4.16
2235 2334 5.366768 TCCCTCTGTTCCTTGATATAAGGTG 59.633 44.000 5.67 0.00 38.55 4.00
2236 2335 5.538877 TCCCTCTGTTCCTTGATATAAGGT 58.461 41.667 5.67 0.00 38.55 3.50
2237 2336 5.604650 ACTCCCTCTGTTCCTTGATATAAGG 59.395 44.000 0.00 0.00 38.78 2.69
2238 2337 6.739331 ACTCCCTCTGTTCCTTGATATAAG 57.261 41.667 0.00 0.00 0.00 1.73
2239 2338 8.618240 TTTACTCCCTCTGTTCCTTGATATAA 57.382 34.615 0.00 0.00 0.00 0.98
2240 2339 8.618240 TTTTACTCCCTCTGTTCCTTGATATA 57.382 34.615 0.00 0.00 0.00 0.86
2241 2340 7.510675 TTTTACTCCCTCTGTTCCTTGATAT 57.489 36.000 0.00 0.00 0.00 1.63
2242 2341 6.945636 TTTTACTCCCTCTGTTCCTTGATA 57.054 37.500 0.00 0.00 0.00 2.15
2243 2342 5.843019 TTTTACTCCCTCTGTTCCTTGAT 57.157 39.130 0.00 0.00 0.00 2.57
2244 2343 5.843019 ATTTTACTCCCTCTGTTCCTTGA 57.157 39.130 0.00 0.00 0.00 3.02
2245 2344 6.901081 AAATTTTACTCCCTCTGTTCCTTG 57.099 37.500 0.00 0.00 0.00 3.61
2246 2345 8.615705 AGATAAATTTTACTCCCTCTGTTCCTT 58.384 33.333 0.00 0.00 0.00 3.36
2247 2346 8.164057 AGATAAATTTTACTCCCTCTGTTCCT 57.836 34.615 0.00 0.00 0.00 3.36
2248 2347 8.268605 AGAGATAAATTTTACTCCCTCTGTTCC 58.731 37.037 15.70 0.00 0.00 3.62
2249 2348 9.674068 AAGAGATAAATTTTACTCCCTCTGTTC 57.326 33.333 15.70 0.00 31.03 3.18
2250 2349 9.454859 CAAGAGATAAATTTTACTCCCTCTGTT 57.545 33.333 15.70 5.04 31.03 3.16
2251 2350 7.554476 GCAAGAGATAAATTTTACTCCCTCTGT 59.446 37.037 15.70 0.51 31.03 3.41
2252 2351 7.254590 CGCAAGAGATAAATTTTACTCCCTCTG 60.255 40.741 15.70 11.31 43.02 3.35
2253 2352 6.763610 CGCAAGAGATAAATTTTACTCCCTCT 59.236 38.462 15.70 8.35 43.02 3.69
2254 2353 6.539103 ACGCAAGAGATAAATTTTACTCCCTC 59.461 38.462 15.70 6.79 43.62 4.30
2255 2354 6.415573 ACGCAAGAGATAAATTTTACTCCCT 58.584 36.000 15.70 6.01 43.62 4.20
2256 2355 6.315393 TGACGCAAGAGATAAATTTTACTCCC 59.685 38.462 15.70 8.01 43.62 4.30
2257 2356 7.303634 TGACGCAAGAGATAAATTTTACTCC 57.696 36.000 15.70 5.48 43.62 3.85
2258 2357 9.774742 AAATGACGCAAGAGATAAATTTTACTC 57.225 29.630 13.07 13.07 43.62 2.59
2286 2385 6.552859 TTTTCGCATGAGTCTTCACATTAA 57.447 33.333 0.00 0.00 35.83 1.40
2332 2431 6.812998 ACTGCCATGATTGAAAATGAATAGG 58.187 36.000 0.00 0.00 0.00 2.57
2390 2489 6.205658 TCGTCATAAGATGGACTACAGATCTG 59.794 42.308 21.37 21.37 31.88 2.90
2405 2504 6.505044 TTACTGCTTGTAGTCGTCATAAGA 57.495 37.500 0.00 0.00 32.08 2.10
2408 2507 6.072342 TCAGTTTACTGCTTGTAGTCGTCATA 60.072 38.462 5.00 0.00 43.46 2.15
2410 2509 4.037089 TCAGTTTACTGCTTGTAGTCGTCA 59.963 41.667 5.00 0.00 43.46 4.35
2414 2513 3.680458 GGCTCAGTTTACTGCTTGTAGTC 59.320 47.826 5.00 0.00 43.46 2.59
2415 2514 3.071023 TGGCTCAGTTTACTGCTTGTAGT 59.929 43.478 5.00 0.00 43.46 2.73
2420 2519 3.305608 GCATTTGGCTCAGTTTACTGCTT 60.306 43.478 5.00 0.00 43.46 3.91
2425 2524 1.068610 TGCGCATTTGGCTCAGTTTAC 60.069 47.619 5.66 0.00 41.67 2.01
2430 2529 2.180017 GGTGCGCATTTGGCTCAG 59.820 61.111 15.91 0.00 38.02 3.35
2431 2530 3.736100 CGGTGCGCATTTGGCTCA 61.736 61.111 15.91 0.00 41.67 4.26
2463 2562 4.247380 GCCTGGCTCCATCGAGGG 62.247 72.222 10.57 10.57 36.55 4.30
2465 2564 1.078214 TTTGCCTGGCTCCATCGAG 60.078 57.895 21.03 0.00 39.33 4.04
2475 2574 5.294552 GTCTACTATAACAAGCTTTGCCTGG 59.705 44.000 0.00 0.00 0.00 4.45
2477 2576 6.049955 TGTCTACTATAACAAGCTTTGCCT 57.950 37.500 0.00 0.00 0.00 4.75
2484 2583 6.956299 TTTCGGTTGTCTACTATAACAAGC 57.044 37.500 7.22 7.22 45.64 4.01
2491 2590 5.514204 CGACGATTTTTCGGTTGTCTACTAT 59.486 40.000 0.00 0.00 37.45 2.12
2501 2600 2.068837 TAGCACGACGATTTTTCGGT 57.931 45.000 0.00 0.00 40.92 4.69
2504 2603 2.158841 TGCCTTAGCACGACGATTTTTC 59.841 45.455 0.00 0.00 46.52 2.29
2505 2604 2.147958 TGCCTTAGCACGACGATTTTT 58.852 42.857 0.00 0.00 46.52 1.94
2506 2605 1.803334 TGCCTTAGCACGACGATTTT 58.197 45.000 0.00 0.00 46.52 1.82
2531 2630 2.483877 TGTTATTCTGGAGCGCTTGTTG 59.516 45.455 13.26 2.57 0.00 3.33
2541 2640 4.976224 TCTCGACGATTGTTATTCTGGA 57.024 40.909 0.00 0.00 0.00 3.86
2548 2647 7.696872 CACTTCTCTTTATCTCGACGATTGTTA 59.303 37.037 0.00 0.00 33.48 2.41
2556 2655 7.067116 CGATCTACACTTCTCTTTATCTCGAC 58.933 42.308 0.00 0.00 0.00 4.20
2564 2663 6.153680 AGTCATTCCGATCTACACTTCTCTTT 59.846 38.462 0.00 0.00 0.00 2.52
2588 2687 5.712217 TGTTCGTGTGTCTTTAAGTTGAG 57.288 39.130 0.00 0.00 0.00 3.02
2589 2688 7.168637 GTCTATGTTCGTGTGTCTTTAAGTTGA 59.831 37.037 0.00 0.00 0.00 3.18
2593 2692 5.854866 TCGTCTATGTTCGTGTGTCTTTAAG 59.145 40.000 0.00 0.00 0.00 1.85
2596 2695 4.233123 TCGTCTATGTTCGTGTGTCTTT 57.767 40.909 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.