Multiple sequence alignment - TraesCS1B01G138100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G138100 chr1B 100.000 4326 0 0 1 4326 177839345 177835020 0.000000e+00 7989.0
1 TraesCS1B01G138100 chr1B 88.034 117 9 2 3660 3776 1823677 1823566 2.710000e-27 134.0
2 TraesCS1B01G138100 chr1B 86.325 117 11 3 3660 3776 666933558 666933669 5.870000e-24 122.0
3 TraesCS1B01G138100 chr1B 95.312 64 3 0 4263 4326 177811140 177811077 7.650000e-18 102.0
4 TraesCS1B01G138100 chr1B 83.178 107 16 2 4010 4115 158531307 158531202 3.560000e-16 97.1
5 TraesCS1B01G138100 chr1D 94.293 2243 77 28 56 2277 116006329 116004117 0.000000e+00 3386.0
6 TraesCS1B01G138100 chr1D 96.438 1151 37 4 2309 3456 116004120 116002971 0.000000e+00 1895.0
7 TraesCS1B01G138100 chr1D 94.286 175 7 1 3467 3641 128530466 128530637 9.220000e-67 265.0
8 TraesCS1B01G138100 chr1D 91.489 47 4 0 3843 3889 437855315 437855361 1.000000e-06 65.8
9 TraesCS1B01G138100 chr1A 93.858 2133 76 22 58 2152 127078579 127076464 0.000000e+00 3162.0
10 TraesCS1B01G138100 chr1A 95.311 1301 45 7 2184 3475 127076467 127075174 0.000000e+00 2050.0
11 TraesCS1B01G138100 chr1A 82.108 408 48 14 3942 4326 432625910 432625505 4.170000e-85 326.0
12 TraesCS1B01G138100 chr1A 92.818 181 10 1 3462 3642 90767726 90767549 4.290000e-65 259.0
13 TraesCS1B01G138100 chr1A 88.485 165 19 0 4162 4326 127074594 127074430 2.640000e-47 200.0
14 TraesCS1B01G138100 chr1A 91.892 37 3 0 3787 3823 475311171 475311135 8.000000e-03 52.8
15 TraesCS1B01G138100 chr1A 100.000 28 0 0 3788 3815 564450555 564450582 8.000000e-03 52.8
16 TraesCS1B01G138100 chr5A 84.424 321 19 10 3459 3778 436260748 436260458 1.970000e-73 287.0
17 TraesCS1B01G138100 chr5A 95.322 171 5 1 3474 3644 367790241 367790074 7.130000e-68 268.0
18 TraesCS1B01G138100 chr5A 79.143 350 54 15 3942 4285 146935700 146935364 1.570000e-54 224.0
19 TraesCS1B01G138100 chr5A 92.424 66 5 0 1730 1795 57375666 57375601 1.280000e-15 95.3
20 TraesCS1B01G138100 chr5A 82.292 96 17 0 1694 1789 575658615 575658710 2.770000e-12 84.2
21 TraesCS1B01G138100 chr5A 95.455 44 2 0 3846 3889 549400456 549400499 2.160000e-08 71.3
22 TraesCS1B01G138100 chr7D 85.714 259 31 5 3948 4201 270711981 270711724 7.130000e-68 268.0
23 TraesCS1B01G138100 chr7D 89.109 202 19 2 3455 3656 519969083 519968885 9.290000e-62 248.0
24 TraesCS1B01G138100 chr7D 100.000 45 0 0 3890 3934 141135481 141135525 2.770000e-12 84.2
25 TraesCS1B01G138100 chr7D 96.000 50 1 1 3887 3935 84326818 84326769 3.590000e-11 80.5
26 TraesCS1B01G138100 chr7D 97.368 38 1 0 3852 3889 600490439 600490402 1.000000e-06 65.8
27 TraesCS1B01G138100 chr5D 94.767 172 5 2 3474 3644 445106652 445106484 9.220000e-67 265.0
28 TraesCS1B01G138100 chr5D 88.095 210 18 5 3440 3647 64274867 64275071 4.320000e-60 243.0
29 TraesCS1B01G138100 chr5D 88.182 110 9 1 3682 3787 279302838 279302729 1.260000e-25 128.0
30 TraesCS1B01G138100 chr5D 86.842 114 9 4 3660 3773 241946305 241946412 5.870000e-24 122.0
31 TraesCS1B01G138100 chr5D 78.453 181 34 5 3942 4119 443309853 443310031 3.540000e-21 113.0
32 TraesCS1B01G138100 chr5D 95.238 63 3 0 1727 1789 66756451 66756513 2.750000e-17 100.0
33 TraesCS1B01G138100 chr5D 83.333 96 16 0 1694 1789 457777221 457777316 5.960000e-14 89.8
34 TraesCS1B01G138100 chr5D 95.556 45 2 0 3788 3832 150835347 150835303 6.000000e-09 73.1
35 TraesCS1B01G138100 chr5D 100.000 31 0 0 3271 3301 21021100 21021070 1.680000e-04 58.4
36 TraesCS1B01G138100 chr3B 93.820 178 8 1 3466 3643 499167810 499167636 9.220000e-67 265.0
37 TraesCS1B01G138100 chr3B 86.667 135 18 0 1673 1807 126921207 126921341 2.690000e-32 150.0
38 TraesCS1B01G138100 chr3B 85.124 121 13 3 3656 3776 755450075 755449960 7.600000e-23 119.0
39 TraesCS1B01G138100 chr3B 86.364 88 9 3 4002 4088 415648489 415648404 4.610000e-15 93.5
40 TraesCS1B01G138100 chr3D 87.500 216 22 3 3442 3657 496740156 496739946 1.200000e-60 244.0
41 TraesCS1B01G138100 chr3D 81.553 206 23 8 1094 1287 81206732 81206934 5.790000e-34 156.0
42 TraesCS1B01G138100 chr3D 75.477 367 54 21 1441 1795 81207160 81207502 3.490000e-31 147.0
43 TraesCS1B01G138100 chr3D 87.500 112 9 1 3660 3771 583473251 583473357 1.630000e-24 124.0
44 TraesCS1B01G138100 chr3D 86.325 117 11 2 3660 3776 130497918 130498029 5.870000e-24 122.0
45 TraesCS1B01G138100 chr3D 96.078 51 1 1 3887 3936 545176667 545176717 9.970000e-12 82.4
46 TraesCS1B01G138100 chr2D 79.167 264 50 5 3942 4201 50440580 50440318 1.240000e-40 178.0
47 TraesCS1B01G138100 chr2D 84.733 131 12 2 3660 3787 373883454 373883579 1.630000e-24 124.0
48 TraesCS1B01G138100 chr2D 91.489 47 3 1 3788 3833 616608452 616608406 3.610000e-06 63.9
49 TraesCS1B01G138100 chr2D 100.000 31 0 0 3271 3301 209185675 209185645 1.680000e-04 58.4
50 TraesCS1B01G138100 chr2D 90.476 42 4 0 3789 3830 206242376 206242335 6.040000e-04 56.5
51 TraesCS1B01G138100 chr3A 86.667 135 18 0 1673 1807 95477817 95477951 2.690000e-32 150.0
52 TraesCS1B01G138100 chr3A 86.747 83 10 1 1441 1522 95477584 95477666 1.660000e-14 91.6
53 TraesCS1B01G138100 chr3A 100.000 45 0 0 3890 3934 647021286 647021330 2.770000e-12 84.2
54 TraesCS1B01G138100 chr4D 86.777 121 11 1 3656 3776 40952276 40952161 3.510000e-26 130.0
55 TraesCS1B01G138100 chr4D 100.000 38 0 0 3852 3889 326379924 326379887 2.160000e-08 71.3
56 TraesCS1B01G138100 chr4D 95.556 45 1 1 3845 3889 427269615 427269658 2.160000e-08 71.3
57 TraesCS1B01G138100 chr6B 86.325 117 12 2 3660 3776 256326159 256326271 1.630000e-24 124.0
58 TraesCS1B01G138100 chr6B 79.348 184 30 8 3942 4119 694447605 694447786 5.870000e-24 122.0
59 TraesCS1B01G138100 chr6B 84.071 113 13 4 3942 4049 310390884 310390996 2.130000e-18 104.0
60 TraesCS1B01G138100 chr6B 97.727 44 1 0 3846 3889 437150784 437150741 4.640000e-10 76.8
61 TraesCS1B01G138100 chr6B 95.349 43 2 0 3788 3830 225541849 225541891 7.760000e-08 69.4
62 TraesCS1B01G138100 chr6B 76.364 110 24 2 3942 4049 632431504 632431613 1.680000e-04 58.4
63 TraesCS1B01G138100 chr6D 79.348 184 30 7 3942 4119 456647892 456648073 5.870000e-24 122.0
64 TraesCS1B01G138100 chr5B 93.939 66 4 0 1730 1795 64265119 64265054 2.750000e-17 100.0
65 TraesCS1B01G138100 chr5B 83.333 96 16 0 1694 1789 559992274 559992369 5.960000e-14 89.8
66 TraesCS1B01G138100 chr5B 97.872 47 1 0 3888 3934 56695161 56695207 9.970000e-12 82.4
67 TraesCS1B01G138100 chr5B 97.368 38 1 0 3852 3889 563123151 563123188 1.000000e-06 65.8
68 TraesCS1B01G138100 chr7B 76.923 182 37 5 3942 4119 411357431 411357611 9.900000e-17 99.0
69 TraesCS1B01G138100 chr7B 82.143 112 17 3 3942 4050 193801060 193800949 4.610000e-15 93.5
70 TraesCS1B01G138100 chr7B 97.778 45 1 0 3890 3934 611239570 611239614 1.290000e-10 78.7
71 TraesCS1B01G138100 chr6A 96.000 50 1 1 3886 3934 64321628 64321677 3.590000e-11 80.5
72 TraesCS1B01G138100 chr2B 94.231 52 3 0 3883 3934 799555105 799555054 3.590000e-11 80.5
73 TraesCS1B01G138100 chr4B 87.302 63 6 1 3889 3951 556997974 556998034 2.160000e-08 71.3
74 TraesCS1B01G138100 chr7A 91.489 47 4 0 3843 3889 24673625 24673671 1.000000e-06 65.8
75 TraesCS1B01G138100 chr2A 93.182 44 3 0 3787 3830 656371991 656372034 1.000000e-06 65.8
76 TraesCS1B01G138100 chr2A 91.489 47 4 0 3843 3889 731536423 731536469 1.000000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G138100 chr1B 177835020 177839345 4325 True 7989.0 7989 100.000000 1 4326 1 chr1B.!!$R4 4325
1 TraesCS1B01G138100 chr1D 116002971 116006329 3358 True 2640.5 3386 95.365500 56 3456 2 chr1D.!!$R1 3400
2 TraesCS1B01G138100 chr1A 127074430 127078579 4149 True 1804.0 3162 92.551333 58 4326 3 chr1A.!!$R4 4268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 757 0.178992 GGGAATGGGGATTGCGATGA 60.179 55.000 0.00 0.00 0.00 2.92 F
834 859 0.240945 GAATGCAAATATCGGCGGGG 59.759 55.000 7.21 0.00 0.00 5.73 F
858 883 0.909843 GCATCGCGACAAGAAATTGC 59.090 50.000 12.93 11.62 0.00 3.56 F
1507 1554 1.215647 CGACCTCAAGGCTTACGCT 59.784 57.895 0.00 0.00 39.32 5.07 F
2365 2416 1.151668 CAGCTGTTCAGTTTCTCGGG 58.848 55.000 5.25 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 2348 0.594602 CATCATTCGCCGCCAATCAT 59.405 50.000 0.00 0.0 0.00 2.45 R
2299 2350 1.370900 GCATCATTCGCCGCCAATC 60.371 57.895 0.00 0.0 0.00 2.67 R
2300 2351 1.789078 GAGCATCATTCGCCGCCAAT 61.789 55.000 0.00 0.0 33.17 3.16 R
3316 3376 1.609501 CTCGGGAGAACAGGGACCA 60.610 63.158 0.00 0.0 39.18 4.02 R
4022 4136 0.101759 TACGGCTAGCGTTGGATGTC 59.898 55.000 15.48 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.855235 GCTTGGTTAGTTTAGTAGAAAGCG 58.145 41.667 0.00 0.00 0.00 4.68
24 25 5.407691 GCTTGGTTAGTTTAGTAGAAAGCGT 59.592 40.000 0.00 0.00 0.00 5.07
25 26 6.073385 GCTTGGTTAGTTTAGTAGAAAGCGTT 60.073 38.462 0.00 0.00 0.00 4.84
26 27 7.519488 GCTTGGTTAGTTTAGTAGAAAGCGTTT 60.519 37.037 0.00 0.00 0.00 3.60
27 28 7.790823 TGGTTAGTTTAGTAGAAAGCGTTTT 57.209 32.000 0.00 0.00 0.00 2.43
28 29 8.212317 TGGTTAGTTTAGTAGAAAGCGTTTTT 57.788 30.769 0.00 0.00 0.00 1.94
29 30 8.124199 TGGTTAGTTTAGTAGAAAGCGTTTTTG 58.876 33.333 0.00 0.00 0.00 2.44
30 31 8.124823 GGTTAGTTTAGTAGAAAGCGTTTTTGT 58.875 33.333 0.00 0.00 0.00 2.83
31 32 9.494479 GTTAGTTTAGTAGAAAGCGTTTTTGTT 57.506 29.630 0.00 0.00 0.00 2.83
33 34 8.975410 AGTTTAGTAGAAAGCGTTTTTGTTTT 57.025 26.923 0.00 0.00 0.00 2.43
34 35 8.856247 AGTTTAGTAGAAAGCGTTTTTGTTTTG 58.144 29.630 0.00 0.00 0.00 2.44
35 36 8.852380 GTTTAGTAGAAAGCGTTTTTGTTTTGA 58.148 29.630 0.00 0.00 0.00 2.69
36 37 6.864560 AGTAGAAAGCGTTTTTGTTTTGAC 57.135 33.333 0.00 0.00 0.00 3.18
37 38 6.383415 AGTAGAAAGCGTTTTTGTTTTGACA 58.617 32.000 0.00 0.00 0.00 3.58
38 39 6.864165 AGTAGAAAGCGTTTTTGTTTTGACAA 59.136 30.769 0.00 0.00 0.00 3.18
39 40 6.532365 AGAAAGCGTTTTTGTTTTGACAAA 57.468 29.167 0.00 0.00 37.77 2.83
40 41 6.949449 AGAAAGCGTTTTTGTTTTGACAAAA 58.051 28.000 9.30 9.30 44.71 2.44
51 52 9.840427 TTTTGTTTTGACAAAAAGAGAGAGTAG 57.160 29.630 14.75 0.00 43.82 2.57
52 53 8.786826 TTGTTTTGACAAAAAGAGAGAGTAGA 57.213 30.769 14.75 0.00 35.96 2.59
53 54 8.964476 TGTTTTGACAAAAAGAGAGAGTAGAT 57.036 30.769 14.75 0.00 35.96 1.98
54 55 8.830580 TGTTTTGACAAAAAGAGAGAGTAGATG 58.169 33.333 14.75 0.00 35.96 2.90
55 56 7.969536 TTTGACAAAAAGAGAGAGTAGATGG 57.030 36.000 0.00 0.00 0.00 3.51
56 57 6.672266 TGACAAAAAGAGAGAGTAGATGGT 57.328 37.500 0.00 0.00 0.00 3.55
57 58 7.067496 TGACAAAAAGAGAGAGTAGATGGTT 57.933 36.000 0.00 0.00 0.00 3.67
58 59 6.931281 TGACAAAAAGAGAGAGTAGATGGTTG 59.069 38.462 0.00 0.00 0.00 3.77
59 60 6.234177 ACAAAAAGAGAGAGTAGATGGTTGG 58.766 40.000 0.00 0.00 0.00 3.77
60 61 6.183361 ACAAAAAGAGAGAGTAGATGGTTGGT 60.183 38.462 0.00 0.00 0.00 3.67
61 62 5.413309 AAAGAGAGAGTAGATGGTTGGTG 57.587 43.478 0.00 0.00 0.00 4.17
62 63 4.054359 AGAGAGAGTAGATGGTTGGTGT 57.946 45.455 0.00 0.00 0.00 4.16
63 64 5.194473 AGAGAGAGTAGATGGTTGGTGTA 57.806 43.478 0.00 0.00 0.00 2.90
64 65 5.197451 AGAGAGAGTAGATGGTTGGTGTAG 58.803 45.833 0.00 0.00 0.00 2.74
65 66 4.936802 AGAGAGTAGATGGTTGGTGTAGT 58.063 43.478 0.00 0.00 0.00 2.73
66 67 6.069556 AGAGAGAGTAGATGGTTGGTGTAGTA 60.070 42.308 0.00 0.00 0.00 1.82
67 68 6.674573 AGAGAGTAGATGGTTGGTGTAGTAT 58.325 40.000 0.00 0.00 0.00 2.12
68 69 7.126733 AGAGAGTAGATGGTTGGTGTAGTATT 58.873 38.462 0.00 0.00 0.00 1.89
69 70 7.620094 AGAGAGTAGATGGTTGGTGTAGTATTT 59.380 37.037 0.00 0.00 0.00 1.40
70 71 8.147244 AGAGTAGATGGTTGGTGTAGTATTTT 57.853 34.615 0.00 0.00 0.00 1.82
71 72 8.603304 AGAGTAGATGGTTGGTGTAGTATTTTT 58.397 33.333 0.00 0.00 0.00 1.94
72 73 8.788325 AGTAGATGGTTGGTGTAGTATTTTTC 57.212 34.615 0.00 0.00 0.00 2.29
73 74 8.380099 AGTAGATGGTTGGTGTAGTATTTTTCA 58.620 33.333 0.00 0.00 0.00 2.69
135 142 3.002102 TGTAAAATCGGCGAAGGTAACC 58.998 45.455 15.93 0.00 37.17 2.85
140 147 1.477553 TCGGCGAAGGTAACCACTAT 58.522 50.000 7.35 0.00 37.17 2.12
142 149 2.358898 TCGGCGAAGGTAACCACTATAC 59.641 50.000 7.35 0.00 37.17 1.47
143 150 2.735823 GGCGAAGGTAACCACTATACG 58.264 52.381 0.00 0.00 37.17 3.06
144 151 2.099756 GGCGAAGGTAACCACTATACGT 59.900 50.000 0.00 0.00 37.17 3.57
147 154 4.035675 GCGAAGGTAACCACTATACGTACT 59.964 45.833 0.00 0.00 37.17 2.73
475 491 2.813908 CCGCTGGTACACGCCTTC 60.814 66.667 0.00 0.00 33.08 3.46
484 500 4.812476 CACGCCTTCGCCGGATCA 62.812 66.667 5.05 0.00 39.84 2.92
487 503 4.537433 GCCTTCGCCGGATCAGCT 62.537 66.667 5.05 0.00 0.00 4.24
525 541 2.603776 GGATAGGGATCGGGCGGT 60.604 66.667 0.00 0.00 32.28 5.68
637 661 2.903855 CCACCGCTGGATGGATGC 60.904 66.667 0.00 0.00 40.55 3.91
638 662 2.124612 CACCGCTGGATGGATGCA 60.125 61.111 0.00 0.00 0.00 3.96
639 663 1.527611 CACCGCTGGATGGATGCAT 60.528 57.895 0.00 0.00 0.00 3.96
640 664 1.527611 ACCGCTGGATGGATGCATG 60.528 57.895 2.46 0.00 0.00 4.06
674 698 4.002982 TGATGACCCGATTTCTCTGTTTG 58.997 43.478 0.00 0.00 0.00 2.93
679 703 5.126384 TGACCCGATTTCTCTGTTTGTTTTT 59.874 36.000 0.00 0.00 0.00 1.94
729 754 1.077068 GTGGGAATGGGGATTGCGA 60.077 57.895 0.00 0.00 0.00 5.10
731 756 0.467844 TGGGAATGGGGATTGCGATG 60.468 55.000 0.00 0.00 0.00 3.84
732 757 0.178992 GGGAATGGGGATTGCGATGA 60.179 55.000 0.00 0.00 0.00 2.92
806 831 3.128242 GGATGGAGCAAAGTTGATCTGTG 59.872 47.826 9.00 0.00 42.83 3.66
828 853 4.096231 TGTTGGACTGGAATGCAAATATCG 59.904 41.667 0.00 0.00 31.13 2.92
830 855 2.030805 GGACTGGAATGCAAATATCGGC 60.031 50.000 0.00 0.00 0.00 5.54
834 859 0.240945 GAATGCAAATATCGGCGGGG 59.759 55.000 7.21 0.00 0.00 5.73
849 874 4.451150 GGGACTGGCATCGCGACA 62.451 66.667 12.93 3.91 0.00 4.35
851 876 2.456119 GGACTGGCATCGCGACAAG 61.456 63.158 12.93 5.04 0.00 3.16
858 883 0.909843 GCATCGCGACAAGAAATTGC 59.090 50.000 12.93 11.62 0.00 3.56
977 1002 2.047830 CACCCACCTATAACCTCCTCC 58.952 57.143 0.00 0.00 0.00 4.30
1061 1086 2.830827 CCACCGCACCAACACCAA 60.831 61.111 0.00 0.00 0.00 3.67
1306 1353 2.659610 GTGCCTGCCTTCTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
1507 1554 1.215647 CGACCTCAAGGCTTACGCT 59.784 57.895 0.00 0.00 39.32 5.07
1616 1663 1.819208 GCGACATGCCATGCCTGTA 60.819 57.895 4.17 0.00 37.51 2.74
1677 1726 2.715046 GATTTGACTGTGGATGCAGGA 58.285 47.619 0.00 0.00 40.59 3.86
1799 1849 1.679032 CGTCCCCTGGAGGTGAATTTC 60.679 57.143 0.00 0.00 33.46 2.17
1817 1867 2.603075 TCTTGGGCCTTTTGTGCTAT 57.397 45.000 4.53 0.00 0.00 2.97
1824 1874 4.530161 TGGGCCTTTTGTGCTATTTTACAT 59.470 37.500 4.53 0.00 0.00 2.29
1912 1962 2.288961 ACACTGCGTAATTAGGGTCG 57.711 50.000 7.25 0.00 0.00 4.79
2011 2061 6.582672 GCTGTTAGTTTCAGTTTATCTTTGCC 59.417 38.462 0.00 0.00 35.60 4.52
2052 2102 7.353414 TGGGTTTAATGAGTTGTTGATTTGA 57.647 32.000 0.00 0.00 0.00 2.69
2197 2248 8.154856 AGTTGGCTATTGTCTGTTTAACTTAGA 58.845 33.333 0.00 0.00 0.00 2.10
2268 2319 5.582665 GTGGATCCTGCTAGTTAAACAGAAG 59.417 44.000 14.23 0.00 33.10 2.85
2278 2329 8.150945 TGCTAGTTAAACAGAAGTCTCAGAAAT 58.849 33.333 0.00 0.00 0.00 2.17
2279 2330 8.994170 GCTAGTTAAACAGAAGTCTCAGAAATT 58.006 33.333 0.00 0.00 0.00 1.82
2365 2416 1.151668 CAGCTGTTCAGTTTCTCGGG 58.848 55.000 5.25 0.00 0.00 5.14
2402 2453 2.106566 ACTAGTGGAGGAGCACTGATG 58.893 52.381 0.00 0.00 33.26 3.07
2516 2574 6.475076 TGTGCTGTTTCATGTGTAATTTGAAC 59.525 34.615 0.00 0.00 0.00 3.18
2534 2592 4.335416 TGAACTGAATGGCTTAGGGAAAG 58.665 43.478 0.00 0.00 38.32 2.62
2598 2656 3.192212 GCCTCATTTTTCCTCCAGACTTG 59.808 47.826 0.00 0.00 0.00 3.16
2744 2804 4.694760 TTGCTGCATCTACCACTATCAT 57.305 40.909 1.84 0.00 0.00 2.45
2823 2883 4.209288 CGGGCTTCATTACGATTCTGTAAG 59.791 45.833 0.00 0.00 37.71 2.34
2852 2912 6.077993 TGGCTCTAATATGGTACTGATCTGT 58.922 40.000 10.33 10.33 0.00 3.41
2863 2923 8.818141 ATGGTACTGATCTGTTATTATTGACG 57.182 34.615 10.76 0.00 0.00 4.35
2914 2974 3.486542 GCATTCGTCTCATGAAAAGCTCC 60.487 47.826 0.00 0.00 30.49 4.70
3316 3376 8.122952 CAGTTCGTTCTTGAAAAATAAGACTGT 58.877 33.333 0.00 0.00 34.14 3.55
3317 3377 8.122952 AGTTCGTTCTTGAAAAATAAGACTGTG 58.877 33.333 0.00 0.00 34.14 3.66
3399 3459 0.389948 GGCACCTGGTACAAGAGTCG 60.390 60.000 0.00 0.00 38.70 4.18
3401 3461 1.935300 GCACCTGGTACAAGAGTCGTG 60.935 57.143 0.00 4.37 38.70 4.35
3412 3472 2.264109 AGAGTCGTGTAATGCGTCAG 57.736 50.000 0.00 0.00 0.00 3.51
3417 3477 3.183775 AGTCGTGTAATGCGTCAGTTTTC 59.816 43.478 0.00 0.00 0.00 2.29
3419 3479 2.478894 CGTGTAATGCGTCAGTTTTCCT 59.521 45.455 0.00 0.00 0.00 3.36
3420 3480 3.676172 CGTGTAATGCGTCAGTTTTCCTA 59.324 43.478 0.00 0.00 0.00 2.94
3421 3481 4.433805 CGTGTAATGCGTCAGTTTTCCTAC 60.434 45.833 0.00 0.00 0.00 3.18
3428 3488 3.059120 GCGTCAGTTTTCCTACCAAGTTC 60.059 47.826 0.00 0.00 0.00 3.01
3478 3538 8.964772 TGTACTCCTTCTGTTACTAAATACTCC 58.035 37.037 0.00 0.00 0.00 3.85
3479 3539 7.421087 ACTCCTTCTGTTACTAAATACTCCC 57.579 40.000 0.00 0.00 0.00 4.30
3480 3540 7.190501 ACTCCTTCTGTTACTAAATACTCCCT 58.809 38.462 0.00 0.00 0.00 4.20
3486 3546 6.096001 TCTGTTACTAAATACTCCCTCCGTTC 59.904 42.308 0.00 0.00 0.00 3.95
3503 3563 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3521 3581 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
3522 3582 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
3530 3590 8.324163 AGACATTTCAAATGGACTAGTACAAC 57.676 34.615 12.92 0.00 0.00 3.32
3531 3591 7.936847 AGACATTTCAAATGGACTAGTACAACA 59.063 33.333 12.92 1.60 0.00 3.33
3532 3592 8.635765 ACATTTCAAATGGACTAGTACAACAT 57.364 30.769 12.92 4.05 0.00 2.71
3533 3593 9.733556 ACATTTCAAATGGACTAGTACAACATA 57.266 29.630 12.92 0.00 0.00 2.29
3534 3594 9.988350 CATTTCAAATGGACTAGTACAACATAC 57.012 33.333 12.92 0.00 0.00 2.39
3535 3595 9.733556 ATTTCAAATGGACTAGTACAACATACA 57.266 29.630 12.92 0.00 0.00 2.29
3536 3596 8.771920 TTCAAATGGACTAGTACAACATACAG 57.228 34.615 12.92 0.00 0.00 2.74
3537 3597 8.129496 TCAAATGGACTAGTACAACATACAGA 57.871 34.615 12.92 1.09 0.00 3.41
3538 3598 8.758829 TCAAATGGACTAGTACAACATACAGAT 58.241 33.333 12.92 0.00 0.00 2.90
3539 3599 8.820933 CAAATGGACTAGTACAACATACAGATG 58.179 37.037 12.92 0.00 39.16 2.90
3541 3601 8.762481 ATGGACTAGTACAACATACAGATGTA 57.238 34.615 12.92 0.00 45.93 2.29
3542 3602 8.762481 TGGACTAGTACAACATACAGATGTAT 57.238 34.615 4.94 0.00 45.93 2.29
3543 3603 9.197306 TGGACTAGTACAACATACAGATGTATT 57.803 33.333 4.94 0.00 45.93 1.89
3582 3642 9.606631 AGAGTATAGATTCACTCATTTTGTTCC 57.393 33.333 4.70 0.00 42.99 3.62
3583 3643 8.425577 AGTATAGATTCACTCATTTTGTTCCG 57.574 34.615 0.00 0.00 0.00 4.30
3584 3644 8.041323 AGTATAGATTCACTCATTTTGTTCCGT 58.959 33.333 0.00 0.00 0.00 4.69
3585 3645 9.309516 GTATAGATTCACTCATTTTGTTCCGTA 57.690 33.333 0.00 0.00 0.00 4.02
3586 3646 8.964476 ATAGATTCACTCATTTTGTTCCGTAT 57.036 30.769 0.00 0.00 0.00 3.06
3587 3647 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
3588 3648 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
3589 3649 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
3590 3650 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
3591 3651 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
3592 3652 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
3593 3653 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
3594 3654 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
3595 3655 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
3596 3656 6.932400 TCATTTTGTTCCGTATGTAGTCACTT 59.068 34.615 0.00 0.00 0.00 3.16
3597 3657 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
3598 3658 4.859304 TGTTCCGTATGTAGTCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
3599 3659 5.204409 TGTTCCGTATGTAGTCACTTGTT 57.796 39.130 0.00 0.00 0.00 2.83
3600 3660 4.986034 TGTTCCGTATGTAGTCACTTGTTG 59.014 41.667 0.00 0.00 0.00 3.33
3601 3661 4.182693 TCCGTATGTAGTCACTTGTTGG 57.817 45.455 0.00 0.00 0.00 3.77
3602 3662 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
3603 3663 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
3604 3664 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
3605 3665 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
3606 3666 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
3607 3667 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
3608 3668 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
3609 3669 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
3610 3670 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
3611 3671 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
3612 3672 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
3613 3673 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
3614 3674 8.159344 AGTCACTTGTTGGAATCTCTAAAAAG 57.841 34.615 2.17 2.17 37.94 2.27
3615 3675 7.993183 AGTCACTTGTTGGAATCTCTAAAAAGA 59.007 33.333 9.03 0.00 35.06 2.52
3616 3676 8.070769 GTCACTTGTTGGAATCTCTAAAAAGAC 58.929 37.037 9.03 0.00 35.06 3.01
3617 3677 7.993183 TCACTTGTTGGAATCTCTAAAAAGACT 59.007 33.333 9.03 0.00 35.06 3.24
3618 3678 8.624776 CACTTGTTGGAATCTCTAAAAAGACTT 58.375 33.333 9.03 0.00 35.06 3.01
3619 3679 8.624776 ACTTGTTGGAATCTCTAAAAAGACTTG 58.375 33.333 9.03 0.00 35.06 3.16
3620 3680 8.519799 TTGTTGGAATCTCTAAAAAGACTTGT 57.480 30.769 0.00 0.00 0.00 3.16
3621 3681 9.621629 TTGTTGGAATCTCTAAAAAGACTTGTA 57.378 29.630 0.00 0.00 0.00 2.41
3622 3682 9.793259 TGTTGGAATCTCTAAAAAGACTTGTAT 57.207 29.630 0.00 0.00 0.00 2.29
3632 3692 9.211485 TCTAAAAAGACTTGTATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
3633 3693 9.211485 CTAAAAAGACTTGTATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
3634 3694 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3635 3695 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3636 3696 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3637 3697 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3638 3698 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3639 3699 3.716431 TGTATTTAGGAACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
3640 3700 4.870636 TGTATTTAGGAACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
3641 3701 5.461327 TGTATTTAGGAACGGAGGGAGTAT 58.539 41.667 0.00 0.00 0.00 2.12
3642 3702 6.613699 TGTATTTAGGAACGGAGGGAGTATA 58.386 40.000 0.00 0.00 0.00 1.47
3643 3703 7.068702 TGTATTTAGGAACGGAGGGAGTATAA 58.931 38.462 0.00 0.00 0.00 0.98
3644 3704 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3645 3705 3.684408 AGGAACGGAGGGAGTATAAGT 57.316 47.619 0.00 0.00 0.00 2.24
3646 3706 3.564264 AGGAACGGAGGGAGTATAAGTC 58.436 50.000 0.00 0.00 0.00 3.01
3647 3707 3.204831 AGGAACGGAGGGAGTATAAGTCT 59.795 47.826 0.00 0.00 0.00 3.24
3648 3708 3.959449 GGAACGGAGGGAGTATAAGTCTT 59.041 47.826 0.00 0.00 0.00 3.01
3649 3709 4.405036 GGAACGGAGGGAGTATAAGTCTTT 59.595 45.833 0.00 0.00 0.00 2.52
3650 3710 5.451659 GGAACGGAGGGAGTATAAGTCTTTC 60.452 48.000 0.00 0.00 0.00 2.62
3651 3711 4.869451 ACGGAGGGAGTATAAGTCTTTCT 58.131 43.478 0.00 0.00 0.00 2.52
3652 3712 6.011122 ACGGAGGGAGTATAAGTCTTTCTA 57.989 41.667 0.00 0.00 0.00 2.10
3653 3713 6.063404 ACGGAGGGAGTATAAGTCTTTCTAG 58.937 44.000 0.00 0.00 0.00 2.43
3654 3714 6.126536 ACGGAGGGAGTATAAGTCTTTCTAGA 60.127 42.308 0.00 0.00 0.00 2.43
3655 3715 6.428771 CGGAGGGAGTATAAGTCTTTCTAGAG 59.571 46.154 0.00 0.00 0.00 2.43
3656 3716 6.717997 GGAGGGAGTATAAGTCTTTCTAGAGG 59.282 46.154 0.00 0.00 0.00 3.69
3657 3717 7.421617 GGAGGGAGTATAAGTCTTTCTAGAGGA 60.422 44.444 0.00 0.00 0.00 3.71
3658 3718 7.523415 AGGGAGTATAAGTCTTTCTAGAGGAG 58.477 42.308 0.00 0.00 0.00 3.69
3659 3719 7.129816 AGGGAGTATAAGTCTTTCTAGAGGAGT 59.870 40.741 0.00 0.00 0.00 3.85
3660 3720 8.439172 GGGAGTATAAGTCTTTCTAGAGGAGTA 58.561 40.741 0.00 0.00 0.00 2.59
3668 3728 9.984590 AAGTCTTTCTAGAGGAGTATAAGTCTT 57.015 33.333 0.00 0.00 0.00 3.01
3669 3729 9.984590 AGTCTTTCTAGAGGAGTATAAGTCTTT 57.015 33.333 0.00 0.00 0.00 2.52
3747 3861 8.905660 ACACTCTGAACTACGTCTATATACAT 57.094 34.615 0.00 0.00 0.00 2.29
3748 3862 8.991026 ACACTCTGAACTACGTCTATATACATC 58.009 37.037 0.00 0.00 0.00 3.06
3750 3864 9.210329 ACTCTGAACTACGTCTATATACATCTG 57.790 37.037 0.00 0.00 0.00 2.90
3751 3865 9.210329 CTCTGAACTACGTCTATATACATCTGT 57.790 37.037 0.00 0.00 0.00 3.41
3752 3866 8.989980 TCTGAACTACGTCTATATACATCTGTG 58.010 37.037 0.00 0.00 0.00 3.66
3828 3942 9.927081 AAAGACATATTTAGAAATGGATGGAGT 57.073 29.630 0.00 0.00 0.00 3.85
3836 3950 9.927081 ATTTAGAAATGGATGGAGTAAAGACAT 57.073 29.630 0.00 0.00 0.00 3.06
3837 3951 8.964476 TTAGAAATGGATGGAGTAAAGACATC 57.036 34.615 0.00 0.00 40.10 3.06
3838 3952 7.205515 AGAAATGGATGGAGTAAAGACATCT 57.794 36.000 0.00 0.00 40.53 2.90
3839 3953 7.637511 AGAAATGGATGGAGTAAAGACATCTT 58.362 34.615 0.00 0.00 40.53 2.40
3840 3954 7.772757 AGAAATGGATGGAGTAAAGACATCTTC 59.227 37.037 0.00 0.00 40.53 2.87
3841 3955 6.566079 ATGGATGGAGTAAAGACATCTTCA 57.434 37.500 0.00 0.00 40.53 3.02
3842 3956 6.373005 TGGATGGAGTAAAGACATCTTCAA 57.627 37.500 0.00 0.00 40.53 2.69
3843 3957 6.173339 TGGATGGAGTAAAGACATCTTCAAC 58.827 40.000 0.00 0.00 40.53 3.18
3844 3958 6.013379 TGGATGGAGTAAAGACATCTTCAACT 60.013 38.462 8.56 8.56 40.53 3.16
3845 3959 6.881602 GGATGGAGTAAAGACATCTTCAACTT 59.118 38.462 9.67 0.00 40.53 2.66
3846 3960 7.065204 GGATGGAGTAAAGACATCTTCAACTTC 59.935 40.741 9.67 8.73 40.53 3.01
3847 3961 7.067496 TGGAGTAAAGACATCTTCAACTTCT 57.933 36.000 12.93 0.00 34.35 2.85
3848 3962 6.931281 TGGAGTAAAGACATCTTCAACTTCTG 59.069 38.462 12.93 0.00 34.35 3.02
3849 3963 6.931840 GGAGTAAAGACATCTTCAACTTCTGT 59.068 38.462 9.67 0.00 34.35 3.41
3850 3964 7.095439 GGAGTAAAGACATCTTCAACTTCTGTG 60.095 40.741 9.67 0.00 34.35 3.66
3851 3965 7.275920 AGTAAAGACATCTTCAACTTCTGTGT 58.724 34.615 0.00 0.00 34.61 3.72
3852 3966 5.998454 AAGACATCTTCAACTTCTGTGTG 57.002 39.130 0.00 0.00 0.00 3.82
3853 3967 5.028549 AGACATCTTCAACTTCTGTGTGT 57.971 39.130 0.00 0.00 0.00 3.72
3854 3968 6.161855 AGACATCTTCAACTTCTGTGTGTA 57.838 37.500 0.00 0.00 0.00 2.90
3855 3969 6.219473 AGACATCTTCAACTTCTGTGTGTAG 58.781 40.000 0.00 0.00 0.00 2.74
3856 3970 5.918608 ACATCTTCAACTTCTGTGTGTAGT 58.081 37.500 0.00 0.00 0.00 2.73
3857 3971 6.349300 ACATCTTCAACTTCTGTGTGTAGTT 58.651 36.000 0.00 0.00 36.86 2.24
3858 3972 6.480320 ACATCTTCAACTTCTGTGTGTAGTTC 59.520 38.462 0.00 0.00 34.69 3.01
3859 3973 5.972935 TCTTCAACTTCTGTGTGTAGTTCA 58.027 37.500 0.00 0.00 34.69 3.18
3860 3974 6.582636 TCTTCAACTTCTGTGTGTAGTTCAT 58.417 36.000 0.00 0.00 34.69 2.57
3861 3975 7.722363 TCTTCAACTTCTGTGTGTAGTTCATA 58.278 34.615 0.00 0.00 34.69 2.15
3862 3976 8.367911 TCTTCAACTTCTGTGTGTAGTTCATAT 58.632 33.333 0.00 0.00 34.69 1.78
3863 3977 8.902540 TTCAACTTCTGTGTGTAGTTCATATT 57.097 30.769 0.00 0.00 34.69 1.28
3864 3978 9.990360 TTCAACTTCTGTGTGTAGTTCATATTA 57.010 29.630 0.00 0.00 34.69 0.98
3865 3979 9.990360 TCAACTTCTGTGTGTAGTTCATATTAA 57.010 29.630 0.00 0.00 34.69 1.40
3932 4046 9.453830 AGACTTATATTTAGAAATGGAGGGAGT 57.546 33.333 0.00 0.00 0.00 3.85
3937 4051 5.710409 TTTAGAAATGGAGGGAGTAAGGG 57.290 43.478 0.00 0.00 0.00 3.95
3938 4052 1.847088 AGAAATGGAGGGAGTAAGGGC 59.153 52.381 0.00 0.00 0.00 5.19
3939 4053 1.564348 GAAATGGAGGGAGTAAGGGCA 59.436 52.381 0.00 0.00 0.00 5.36
3940 4054 1.681229 AATGGAGGGAGTAAGGGCAA 58.319 50.000 0.00 0.00 0.00 4.52
3941 4055 0.919710 ATGGAGGGAGTAAGGGCAAC 59.080 55.000 0.00 0.00 0.00 4.17
3942 4056 0.474854 TGGAGGGAGTAAGGGCAACA 60.475 55.000 0.00 0.00 39.74 3.33
3943 4057 0.919710 GGAGGGAGTAAGGGCAACAT 59.080 55.000 0.00 0.00 39.74 2.71
3944 4058 1.134068 GGAGGGAGTAAGGGCAACATC 60.134 57.143 0.00 0.00 39.74 3.06
3945 4059 1.840635 GAGGGAGTAAGGGCAACATCT 59.159 52.381 0.00 0.00 39.74 2.90
3946 4060 2.239907 GAGGGAGTAAGGGCAACATCTT 59.760 50.000 0.00 0.00 39.74 2.40
3947 4061 2.239907 AGGGAGTAAGGGCAACATCTTC 59.760 50.000 0.00 0.00 39.74 2.87
3948 4062 2.026262 GGGAGTAAGGGCAACATCTTCA 60.026 50.000 0.00 0.00 39.74 3.02
3949 4063 3.561313 GGGAGTAAGGGCAACATCTTCAA 60.561 47.826 0.00 0.00 39.74 2.69
3950 4064 3.440522 GGAGTAAGGGCAACATCTTCAAC 59.559 47.826 0.00 0.00 39.74 3.18
3951 4065 3.074412 AGTAAGGGCAACATCTTCAACG 58.926 45.455 0.00 0.00 39.74 4.10
3952 4066 1.247567 AAGGGCAACATCTTCAACGG 58.752 50.000 0.00 0.00 39.74 4.44
3953 4067 1.212751 GGGCAACATCTTCAACGGC 59.787 57.895 0.00 0.00 39.74 5.68
3954 4068 1.523154 GGGCAACATCTTCAACGGCA 61.523 55.000 0.00 0.00 39.74 5.69
3955 4069 0.313672 GGCAACATCTTCAACGGCAA 59.686 50.000 0.00 0.00 0.00 4.52
3956 4070 1.067635 GGCAACATCTTCAACGGCAAT 60.068 47.619 0.00 0.00 0.00 3.56
3957 4071 2.253603 GCAACATCTTCAACGGCAATC 58.746 47.619 0.00 0.00 0.00 2.67
3958 4072 2.508867 CAACATCTTCAACGGCAATCG 58.491 47.619 0.00 0.00 45.88 3.34
3959 4073 0.447801 ACATCTTCAACGGCAATCGC 59.552 50.000 0.00 0.00 43.89 4.58
3960 4074 0.447406 CATCTTCAACGGCAATCGCA 59.553 50.000 0.00 0.00 43.89 5.10
3961 4075 1.135717 CATCTTCAACGGCAATCGCAA 60.136 47.619 0.00 0.00 43.89 4.85
3962 4076 0.947960 TCTTCAACGGCAATCGCAAA 59.052 45.000 0.00 0.00 43.89 3.68
3963 4077 1.335182 TCTTCAACGGCAATCGCAAAA 59.665 42.857 0.00 0.00 43.89 2.44
3964 4078 2.123342 CTTCAACGGCAATCGCAAAAA 58.877 42.857 0.00 0.00 43.89 1.94
3981 4095 3.345508 AAAAACCTCCTACATCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
3982 4096 1.201424 AAACCTCCTACATCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
3983 4097 0.690077 AACCTCCTACATCCGTCCCC 60.690 60.000 0.00 0.00 0.00 4.81
3984 4098 2.201022 CCTCCTACATCCGTCCCCG 61.201 68.421 0.00 0.00 0.00 5.73
4010 4124 4.783621 GCAGTCTGCGGGCATGGA 62.784 66.667 9.53 0.00 31.71 3.41
4011 4125 2.191375 CAGTCTGCGGGCATGGAT 59.809 61.111 0.00 0.00 0.00 3.41
4012 4126 2.184830 CAGTCTGCGGGCATGGATG 61.185 63.158 0.00 0.00 0.00 3.51
4021 4135 2.592861 GCATGGATGCGGGAGGTC 60.593 66.667 0.00 0.00 44.67 3.85
4022 4136 2.280389 CATGGATGCGGGAGGTCG 60.280 66.667 0.00 0.00 0.00 4.79
4023 4137 2.443952 ATGGATGCGGGAGGTCGA 60.444 61.111 0.00 0.00 0.00 4.20
4024 4138 2.797278 ATGGATGCGGGAGGTCGAC 61.797 63.158 7.13 7.13 0.00 4.20
4025 4139 3.458163 GGATGCGGGAGGTCGACA 61.458 66.667 18.91 0.00 0.00 4.35
4026 4140 2.797278 GGATGCGGGAGGTCGACAT 61.797 63.158 18.91 11.04 32.69 3.06
4027 4141 1.300233 GATGCGGGAGGTCGACATC 60.300 63.158 21.44 21.44 36.94 3.06
4028 4142 2.701163 GATGCGGGAGGTCGACATCC 62.701 65.000 35.27 35.27 45.46 3.51
4032 4146 4.496670 GGAGGTCGACATCCAACG 57.503 61.111 37.14 0.00 45.50 4.10
4033 4147 1.810030 GGAGGTCGACATCCAACGC 60.810 63.158 37.14 14.95 45.50 4.84
4034 4148 1.215647 GAGGTCGACATCCAACGCT 59.784 57.895 19.13 2.52 0.00 5.07
4035 4149 0.454600 GAGGTCGACATCCAACGCTA 59.545 55.000 19.13 0.00 0.00 4.26
4036 4150 0.456221 AGGTCGACATCCAACGCTAG 59.544 55.000 18.91 0.00 0.00 3.42
4037 4151 1.146358 GGTCGACATCCAACGCTAGC 61.146 60.000 18.91 4.06 0.00 3.42
4038 4152 1.141019 TCGACATCCAACGCTAGCC 59.859 57.895 9.66 0.00 0.00 3.93
4039 4153 2.230940 CGACATCCAACGCTAGCCG 61.231 63.158 9.66 7.08 44.21 5.52
4052 4166 4.370620 CGCTAGCCGTATACATTTTCAC 57.629 45.455 9.66 0.00 0.00 3.18
4053 4167 3.799963 CGCTAGCCGTATACATTTTCACA 59.200 43.478 9.66 0.00 0.00 3.58
4054 4168 4.269123 CGCTAGCCGTATACATTTTCACAA 59.731 41.667 9.66 0.00 0.00 3.33
4055 4169 5.050363 CGCTAGCCGTATACATTTTCACAAT 60.050 40.000 9.66 0.00 0.00 2.71
4056 4170 6.144886 CGCTAGCCGTATACATTTTCACAATA 59.855 38.462 9.66 0.00 0.00 1.90
4057 4171 7.306925 CGCTAGCCGTATACATTTTCACAATAA 60.307 37.037 9.66 0.00 0.00 1.40
4058 4172 7.797123 GCTAGCCGTATACATTTTCACAATAAC 59.203 37.037 2.29 0.00 0.00 1.89
4059 4173 7.859325 AGCCGTATACATTTTCACAATAACT 57.141 32.000 3.32 0.00 0.00 2.24
4060 4174 7.916552 AGCCGTATACATTTTCACAATAACTC 58.083 34.615 3.32 0.00 0.00 3.01
4061 4175 7.551262 AGCCGTATACATTTTCACAATAACTCA 59.449 33.333 3.32 0.00 0.00 3.41
4062 4176 8.178964 GCCGTATACATTTTCACAATAACTCAA 58.821 33.333 3.32 0.00 0.00 3.02
4069 4183 9.260002 ACATTTTCACAATAACTCAAACCAATC 57.740 29.630 0.00 0.00 0.00 2.67
4070 4184 7.922505 TTTTCACAATAACTCAAACCAATCG 57.077 32.000 0.00 0.00 0.00 3.34
4071 4185 6.869315 TTCACAATAACTCAAACCAATCGA 57.131 33.333 0.00 0.00 0.00 3.59
4072 4186 6.869315 TCACAATAACTCAAACCAATCGAA 57.131 33.333 0.00 0.00 0.00 3.71
4073 4187 7.447374 TCACAATAACTCAAACCAATCGAAT 57.553 32.000 0.00 0.00 0.00 3.34
4074 4188 7.304735 TCACAATAACTCAAACCAATCGAATG 58.695 34.615 0.00 0.00 0.00 2.67
4075 4189 7.174080 TCACAATAACTCAAACCAATCGAATGA 59.826 33.333 0.94 0.00 0.00 2.57
4076 4190 7.807433 CACAATAACTCAAACCAATCGAATGAA 59.193 33.333 0.94 0.00 0.00 2.57
4077 4191 8.356657 ACAATAACTCAAACCAATCGAATGAAA 58.643 29.630 0.94 0.00 0.00 2.69
4078 4192 9.357652 CAATAACTCAAACCAATCGAATGAAAT 57.642 29.630 0.94 0.00 0.00 2.17
4079 4193 9.927668 AATAACTCAAACCAATCGAATGAAATT 57.072 25.926 0.94 0.00 40.93 1.82
4080 4194 9.927668 ATAACTCAAACCAATCGAATGAAATTT 57.072 25.926 0.94 0.00 36.07 1.82
4081 4195 7.642071 ACTCAAACCAATCGAATGAAATTTG 57.358 32.000 0.94 9.64 36.07 2.32
4082 4196 7.209475 ACTCAAACCAATCGAATGAAATTTGT 58.791 30.769 17.12 0.31 38.86 2.83
4083 4197 7.169645 ACTCAAACCAATCGAATGAAATTTGTG 59.830 33.333 17.12 16.85 38.86 3.33
4084 4198 5.844301 AACCAATCGAATGAAATTTGTGC 57.156 34.783 0.94 0.00 38.86 4.57
4085 4199 4.880759 ACCAATCGAATGAAATTTGTGCA 58.119 34.783 0.94 0.00 38.86 4.57
4086 4200 5.295950 ACCAATCGAATGAAATTTGTGCAA 58.704 33.333 0.94 0.00 38.86 4.08
4087 4201 5.757320 ACCAATCGAATGAAATTTGTGCAAA 59.243 32.000 0.94 0.00 38.86 3.68
4088 4202 6.072733 CCAATCGAATGAAATTTGTGCAAAC 58.927 36.000 0.94 0.00 38.86 2.93
4089 4203 6.292757 CCAATCGAATGAAATTTGTGCAAACA 60.293 34.615 0.94 0.00 38.86 2.83
4090 4204 5.633996 TCGAATGAAATTTGTGCAAACAC 57.366 34.783 0.00 0.00 41.76 3.32
4091 4205 4.205996 TCGAATGAAATTTGTGCAAACACG 59.794 37.500 0.00 0.00 43.48 4.49
4092 4206 4.605793 CGAATGAAATTTGTGCAAACACGG 60.606 41.667 0.00 0.00 43.48 4.94
4093 4207 4.269844 GAATGAAATTTGTGCAAACACGGT 59.730 37.500 0.00 0.00 43.48 4.83
4094 4208 5.779732 GAATGAAATTTGTGCAAACACGGTG 60.780 40.000 6.58 6.58 43.48 4.94
4095 4209 7.872917 GAATGAAATTTGTGCAAACACGGTGA 61.873 38.462 16.29 0.00 43.48 4.02
4096 4210 9.250370 GAATGAAATTTGTGCAAACACGGTGAA 62.250 37.037 16.29 0.00 43.48 3.18
4111 4241 9.921637 AAACACGGTGAATTTTGATATAAACAT 57.078 25.926 16.29 0.00 0.00 2.71
4113 4243 8.735315 ACACGGTGAATTTTGATATAAACATGA 58.265 29.630 16.29 0.00 0.00 3.07
4131 4261 8.786826 AAACATGACGGATCTTATTGAAAGTA 57.213 30.769 0.00 0.00 0.00 2.24
4133 4263 6.475727 ACATGACGGATCTTATTGAAAGTACG 59.524 38.462 0.00 0.00 0.00 3.67
4134 4264 6.198650 TGACGGATCTTATTGAAAGTACGA 57.801 37.500 0.00 0.00 0.00 3.43
4136 4266 7.933396 TGACGGATCTTATTGAAAGTACGATA 58.067 34.615 0.00 0.00 0.00 2.92
4138 4268 9.408069 GACGGATCTTATTGAAAGTACGATAAT 57.592 33.333 0.00 0.00 0.00 1.28
4171 4312 4.832590 ACTCGGACTATATTTCGTCTGG 57.167 45.455 0.00 0.00 37.19 3.86
4177 4318 5.629849 CGGACTATATTTCGTCTGGTGAATC 59.370 44.000 0.00 0.00 33.84 2.52
4183 4324 9.490663 CTATATTTCGTCTGGTGAATCAAAAAC 57.509 33.333 0.00 0.00 0.00 2.43
4184 4325 4.561735 TTCGTCTGGTGAATCAAAAACC 57.438 40.909 0.00 0.00 34.38 3.27
4193 4334 9.191479 TCTGGTGAATCAAAAACCTAAAACTAA 57.809 29.630 0.00 0.00 34.90 2.24
4218 4359 6.527057 ACCCTATTATCCTATACTTCACGC 57.473 41.667 0.00 0.00 0.00 5.34
4264 4405 1.565305 CTGGCTGCTACTTCGTCATC 58.435 55.000 0.00 0.00 0.00 2.92
4268 4409 1.457738 CTGCTACTTCGTCATCGTCG 58.542 55.000 0.00 0.00 38.33 5.12
4269 4410 1.062148 CTGCTACTTCGTCATCGTCGA 59.938 52.381 0.00 0.00 38.33 4.20
4272 4413 1.395954 CTACTTCGTCATCGTCGACCA 59.604 52.381 10.58 0.00 37.05 4.02
4276 4417 0.167470 TCGTCATCGTCGACCAACTC 59.833 55.000 10.58 0.00 38.33 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.417496 AACGCTTTCTACTAAACTAACCAAG 57.583 36.000 0.00 0.00 0.00 3.61
8 9 8.856247 CAAAACAAAAACGCTTTCTACTAAACT 58.144 29.630 0.00 0.00 0.00 2.66
9 10 8.852380 TCAAAACAAAAACGCTTTCTACTAAAC 58.148 29.630 0.00 0.00 0.00 2.01
13 14 6.383415 TGTCAAAACAAAAACGCTTTCTACT 58.617 32.000 0.00 0.00 30.70 2.57
14 15 6.620253 TGTCAAAACAAAAACGCTTTCTAC 57.380 33.333 0.00 0.00 30.70 2.59
27 28 8.786826 TCTACTCTCTCTTTTTGTCAAAACAA 57.213 30.769 10.29 1.44 43.58 2.83
28 29 8.830580 CATCTACTCTCTCTTTTTGTCAAAACA 58.169 33.333 10.29 0.11 0.00 2.83
29 30 8.286097 CCATCTACTCTCTCTTTTTGTCAAAAC 58.714 37.037 10.29 0.00 0.00 2.43
30 31 7.993183 ACCATCTACTCTCTCTTTTTGTCAAAA 59.007 33.333 6.65 6.65 0.00 2.44
31 32 7.509546 ACCATCTACTCTCTCTTTTTGTCAAA 58.490 34.615 0.00 0.00 0.00 2.69
32 33 7.067496 ACCATCTACTCTCTCTTTTTGTCAA 57.933 36.000 0.00 0.00 0.00 3.18
33 34 6.672266 ACCATCTACTCTCTCTTTTTGTCA 57.328 37.500 0.00 0.00 0.00 3.58
34 35 6.370166 CCAACCATCTACTCTCTCTTTTTGTC 59.630 42.308 0.00 0.00 0.00 3.18
35 36 6.183361 ACCAACCATCTACTCTCTCTTTTTGT 60.183 38.462 0.00 0.00 0.00 2.83
36 37 6.148480 CACCAACCATCTACTCTCTCTTTTTG 59.852 42.308 0.00 0.00 0.00 2.44
37 38 6.183361 ACACCAACCATCTACTCTCTCTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
38 39 5.308237 ACACCAACCATCTACTCTCTCTTTT 59.692 40.000 0.00 0.00 0.00 2.27
39 40 4.841246 ACACCAACCATCTACTCTCTCTTT 59.159 41.667 0.00 0.00 0.00 2.52
40 41 4.421131 ACACCAACCATCTACTCTCTCTT 58.579 43.478 0.00 0.00 0.00 2.85
41 42 4.054359 ACACCAACCATCTACTCTCTCT 57.946 45.455 0.00 0.00 0.00 3.10
42 43 4.951094 ACTACACCAACCATCTACTCTCTC 59.049 45.833 0.00 0.00 0.00 3.20
43 44 4.936802 ACTACACCAACCATCTACTCTCT 58.063 43.478 0.00 0.00 0.00 3.10
44 45 6.963083 ATACTACACCAACCATCTACTCTC 57.037 41.667 0.00 0.00 0.00 3.20
45 46 7.735326 AAATACTACACCAACCATCTACTCT 57.265 36.000 0.00 0.00 0.00 3.24
46 47 8.788325 AAAAATACTACACCAACCATCTACTC 57.212 34.615 0.00 0.00 0.00 2.59
47 48 8.380099 TGAAAAATACTACACCAACCATCTACT 58.620 33.333 0.00 0.00 0.00 2.57
48 49 8.556213 TGAAAAATACTACACCAACCATCTAC 57.444 34.615 0.00 0.00 0.00 2.59
49 50 9.575868 TTTGAAAAATACTACACCAACCATCTA 57.424 29.630 0.00 0.00 0.00 1.98
50 51 8.472007 TTTGAAAAATACTACACCAACCATCT 57.528 30.769 0.00 0.00 0.00 2.90
51 52 9.535878 TTTTTGAAAAATACTACACCAACCATC 57.464 29.630 0.00 0.00 0.00 3.51
135 142 7.518052 GCCTTGTCTGTACTAGTACGTATAGTG 60.518 44.444 24.36 13.62 38.85 2.74
140 147 3.941483 GGCCTTGTCTGTACTAGTACGTA 59.059 47.826 24.36 14.13 38.85 3.57
142 149 2.751259 TGGCCTTGTCTGTACTAGTACG 59.249 50.000 24.36 19.14 38.85 3.67
143 150 4.796038 TTGGCCTTGTCTGTACTAGTAC 57.204 45.455 23.58 23.58 36.63 2.73
144 151 4.322499 GCTTTGGCCTTGTCTGTACTAGTA 60.322 45.833 3.32 0.00 0.00 1.82
147 154 2.370519 TGCTTTGGCCTTGTCTGTACTA 59.629 45.455 3.32 0.00 37.74 1.82
315 331 0.798389 GCTTTCGCTTTCCATTCGGC 60.798 55.000 0.00 0.00 0.00 5.54
475 491 2.025969 CTGCATAGCTGATCCGGCG 61.026 63.158 0.00 0.00 41.21 6.46
502 518 1.602888 CCGATCCCTATCCGACGGT 60.603 63.158 14.79 3.95 36.38 4.83
637 661 2.868583 GTCATCATCGTCCTTGTCCATG 59.131 50.000 0.00 0.00 0.00 3.66
638 662 2.158900 GGTCATCATCGTCCTTGTCCAT 60.159 50.000 0.00 0.00 0.00 3.41
639 663 1.207089 GGTCATCATCGTCCTTGTCCA 59.793 52.381 0.00 0.00 0.00 4.02
640 664 1.473434 GGGTCATCATCGTCCTTGTCC 60.473 57.143 0.00 0.00 0.00 4.02
729 754 3.371380 GCACCTCCTTGGATTTCTCTCAT 60.371 47.826 0.00 0.00 39.71 2.90
731 756 2.637947 GCACCTCCTTGGATTTCTCTC 58.362 52.381 0.00 0.00 39.71 3.20
732 757 1.065854 CGCACCTCCTTGGATTTCTCT 60.066 52.381 0.00 0.00 39.71 3.10
806 831 4.498009 CCGATATTTGCATTCCAGTCCAAC 60.498 45.833 0.00 0.00 0.00 3.77
834 859 1.014044 TTCTTGTCGCGATGCCAGTC 61.014 55.000 14.06 0.00 0.00 3.51
931 956 3.096791 GGTCTACCGGTCGTCGAG 58.903 66.667 12.40 1.60 42.43 4.04
1061 1086 2.355193 GCGCAAGAGGAGGAGGAGT 61.355 63.158 0.30 0.00 43.02 3.85
1306 1353 2.556622 GCCAAATTTCAGACGGAAGGAA 59.443 45.455 0.00 0.00 36.72 3.36
1616 1663 3.936372 ACACGTAGCTAACACACAGAT 57.064 42.857 0.00 0.00 0.00 2.90
1677 1726 1.056660 TCTCCTCGTTCCCAAGCTTT 58.943 50.000 0.00 0.00 0.00 3.51
1728 1777 2.289002 GTCCTCGTACGTCGGAACATAT 59.711 50.000 23.53 0.00 40.32 1.78
1734 1783 1.300971 CCTTGTCCTCGTACGTCGGA 61.301 60.000 19.89 19.89 40.32 4.55
1799 1849 3.683365 AAATAGCACAAAAGGCCCAAG 57.317 42.857 0.00 0.00 0.00 3.61
1817 1867 5.289675 CGGCATGCGGATTTTAAATGTAAAA 59.710 36.000 19.74 3.28 42.06 1.52
1824 1874 3.337398 GCGGCATGCGGATTTTAAA 57.663 47.368 27.48 0.00 0.00 1.52
1900 1950 3.615224 TCAACCCACGACCCTAATTAC 57.385 47.619 0.00 0.00 0.00 1.89
1912 1962 2.695359 TCAGTTAGCGATTCAACCCAC 58.305 47.619 0.00 0.00 0.00 4.61
2011 2061 9.855021 ATTAAACCCAAATTAATCGTTTCTCAG 57.145 29.630 6.31 0.00 29.22 3.35
2049 2099 9.749340 TCCGAGTTCCTTATATATCACTATCAA 57.251 33.333 0.00 0.00 0.00 2.57
2052 2102 7.560626 GGGTCCGAGTTCCTTATATATCACTAT 59.439 40.741 0.00 0.00 0.00 2.12
2197 2248 6.610075 AACTAAGAACAATTGGCATGGATT 57.390 33.333 10.83 0.00 0.00 3.01
2280 2331 9.352784 CGCCAATCATTTTACATCTCTTTTAAA 57.647 29.630 0.00 0.00 0.00 1.52
2297 2348 0.594602 CATCATTCGCCGCCAATCAT 59.405 50.000 0.00 0.00 0.00 2.45
2298 2349 2.024117 CATCATTCGCCGCCAATCA 58.976 52.632 0.00 0.00 0.00 2.57
2299 2350 1.370900 GCATCATTCGCCGCCAATC 60.371 57.895 0.00 0.00 0.00 2.67
2300 2351 1.789078 GAGCATCATTCGCCGCCAAT 61.789 55.000 0.00 0.00 33.17 3.16
2302 2353 2.896854 GAGCATCATTCGCCGCCA 60.897 61.111 0.00 0.00 33.17 5.69
2303 2354 2.896854 TGAGCATCATTCGCCGCC 60.897 61.111 0.00 0.00 42.56 6.13
2365 2416 5.066505 CCACTAGTTTCAACCCTAATCATGC 59.933 44.000 0.00 0.00 0.00 4.06
2402 2453 2.159254 TGGCTTGCTGTCAGAAACAAAC 60.159 45.455 3.32 0.00 37.45 2.93
2516 2574 3.019564 CCACTTTCCCTAAGCCATTCAG 58.980 50.000 0.00 0.00 37.37 3.02
2534 2592 5.807011 GGCACAATTCTCAATTATTGTCCAC 59.193 40.000 4.77 0.00 41.65 4.02
2598 2656 3.005472 TGAGGCACGGCTAATAGATACAC 59.995 47.826 0.00 0.00 0.00 2.90
2823 2883 5.304614 TCAGTACCATATTAGAGCCAACCTC 59.695 44.000 0.00 0.00 41.07 3.85
2852 2912 7.536964 CACAAACATTCTGCACGTCAATAATAA 59.463 33.333 0.00 0.00 0.00 1.40
2863 2923 2.030805 GGTCTCCACAAACATTCTGCAC 60.031 50.000 0.00 0.00 0.00 4.57
2914 2974 4.082408 TGTGTACCTAGATTGACAACCTCG 60.082 45.833 0.00 0.00 0.00 4.63
3316 3376 1.609501 CTCGGGAGAACAGGGACCA 60.610 63.158 0.00 0.00 39.18 4.02
3317 3377 3.020237 GCTCGGGAGAACAGGGACC 62.020 68.421 0.00 0.00 39.18 4.46
3399 3459 4.142966 GGTAGGAAAACTGACGCATTACAC 60.143 45.833 0.00 0.00 0.00 2.90
3401 3461 3.998341 TGGTAGGAAAACTGACGCATTAC 59.002 43.478 0.00 0.00 0.00 1.89
3412 3472 3.883489 AGCACAGAACTTGGTAGGAAAAC 59.117 43.478 0.00 0.00 0.00 2.43
3417 3477 2.146342 CACAGCACAGAACTTGGTAGG 58.854 52.381 0.00 0.00 0.00 3.18
3419 3479 3.769739 ATCACAGCACAGAACTTGGTA 57.230 42.857 0.00 0.00 0.00 3.25
3420 3480 2.645838 ATCACAGCACAGAACTTGGT 57.354 45.000 0.00 0.00 0.00 3.67
3421 3481 3.996150 AAATCACAGCACAGAACTTGG 57.004 42.857 0.00 0.00 0.00 3.61
3428 3488 8.347771 ACATAATATAGCAAAATCACAGCACAG 58.652 33.333 0.00 0.00 0.00 3.66
3462 3522 5.848833 ACGGAGGGAGTATTTAGTAACAG 57.151 43.478 0.00 0.00 0.00 3.16
3463 3523 5.127682 GGAACGGAGGGAGTATTTAGTAACA 59.872 44.000 0.00 0.00 0.00 2.41
3464 3524 5.362143 AGGAACGGAGGGAGTATTTAGTAAC 59.638 44.000 0.00 0.00 0.00 2.50
3465 3525 5.522641 AGGAACGGAGGGAGTATTTAGTAA 58.477 41.667 0.00 0.00 0.00 2.24
3466 3526 5.134725 AGGAACGGAGGGAGTATTTAGTA 57.865 43.478 0.00 0.00 0.00 1.82
3467 3527 3.991683 AGGAACGGAGGGAGTATTTAGT 58.008 45.455 0.00 0.00 0.00 2.24
3468 3528 6.475596 TTTAGGAACGGAGGGAGTATTTAG 57.524 41.667 0.00 0.00 0.00 1.85
3469 3529 8.731591 ATATTTAGGAACGGAGGGAGTATTTA 57.268 34.615 0.00 0.00 0.00 1.40
3470 3530 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
3471 3531 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
3472 3532 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3473 3533 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3474 3534 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3475 3535 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3476 3536 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3477 3537 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3478 3538 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3508 3568 9.988350 GTATGTTGTACTAGTCCATTTGAAATG 57.012 33.333 10.84 10.84 0.00 2.32
3509 3569 9.733556 TGTATGTTGTACTAGTCCATTTGAAAT 57.266 29.630 0.00 0.00 0.00 2.17
3510 3570 9.214957 CTGTATGTTGTACTAGTCCATTTGAAA 57.785 33.333 0.00 0.00 0.00 2.69
3511 3571 8.590204 TCTGTATGTTGTACTAGTCCATTTGAA 58.410 33.333 0.00 0.00 0.00 2.69
3512 3572 8.129496 TCTGTATGTTGTACTAGTCCATTTGA 57.871 34.615 0.00 0.00 0.00 2.69
3513 3573 8.820933 CATCTGTATGTTGTACTAGTCCATTTG 58.179 37.037 0.00 0.00 0.00 2.32
3514 3574 8.540388 ACATCTGTATGTTGTACTAGTCCATTT 58.460 33.333 0.00 0.00 44.07 2.32
3515 3575 8.079211 ACATCTGTATGTTGTACTAGTCCATT 57.921 34.615 0.00 0.00 44.07 3.16
3516 3576 7.661536 ACATCTGTATGTTGTACTAGTCCAT 57.338 36.000 0.00 0.66 44.07 3.41
3517 3577 8.762481 ATACATCTGTATGTTGTACTAGTCCA 57.238 34.615 0.00 0.00 44.07 4.02
3556 3616 9.606631 GGAACAAAATGAGTGAATCTATACTCT 57.393 33.333 0.00 0.00 42.86 3.24
3557 3617 8.543774 CGGAACAAAATGAGTGAATCTATACTC 58.456 37.037 0.00 0.00 42.77 2.59
3558 3618 8.041323 ACGGAACAAAATGAGTGAATCTATACT 58.959 33.333 0.00 0.00 0.00 2.12
3559 3619 8.197988 ACGGAACAAAATGAGTGAATCTATAC 57.802 34.615 0.00 0.00 0.00 1.47
3561 3621 8.830580 CATACGGAACAAAATGAGTGAATCTAT 58.169 33.333 0.00 0.00 0.00 1.98
3562 3622 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
3563 3623 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
3564 3624 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
3565 3625 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
3566 3626 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
3567 3627 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
3568 3628 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
3569 3629 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
3570 3630 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
3571 3631 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
3572 3632 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
3573 3633 6.708949 ACAAGTGACTACATACGGAACAAAAT 59.291 34.615 0.00 0.00 0.00 1.82
3574 3634 6.050432 ACAAGTGACTACATACGGAACAAAA 58.950 36.000 0.00 0.00 0.00 2.44
3575 3635 5.603596 ACAAGTGACTACATACGGAACAAA 58.396 37.500 0.00 0.00 0.00 2.83
3576 3636 5.204409 ACAAGTGACTACATACGGAACAA 57.796 39.130 0.00 0.00 0.00 2.83
3577 3637 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
3578 3638 4.387862 CCAACAAGTGACTACATACGGAAC 59.612 45.833 0.00 0.00 0.00 3.62
3579 3639 4.281435 TCCAACAAGTGACTACATACGGAA 59.719 41.667 0.00 0.00 0.00 4.30
3580 3640 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
3581 3641 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
3582 3642 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
3583 3643 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
3584 3644 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
3585 3645 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
3586 3646 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
3587 3647 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
3588 3648 9.273016 CTTTTTAGAGATTCCAACAAGTGACTA 57.727 33.333 0.00 0.00 0.00 2.59
3589 3649 7.993183 TCTTTTTAGAGATTCCAACAAGTGACT 59.007 33.333 0.00 0.00 0.00 3.41
3590 3650 8.070769 GTCTTTTTAGAGATTCCAACAAGTGAC 58.929 37.037 0.00 0.00 0.00 3.67
3591 3651 7.993183 AGTCTTTTTAGAGATTCCAACAAGTGA 59.007 33.333 0.00 0.00 0.00 3.41
3592 3652 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
3593 3653 8.624776 CAAGTCTTTTTAGAGATTCCAACAAGT 58.375 33.333 0.00 0.00 0.00 3.16
3594 3654 8.624776 ACAAGTCTTTTTAGAGATTCCAACAAG 58.375 33.333 0.00 0.00 0.00 3.16
3595 3655 8.519799 ACAAGTCTTTTTAGAGATTCCAACAA 57.480 30.769 0.00 0.00 0.00 2.83
3596 3656 9.793259 ATACAAGTCTTTTTAGAGATTCCAACA 57.207 29.630 0.00 0.00 0.00 3.33
3606 3666 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
3607 3667 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
3608 3668 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3609 3669 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3610 3670 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3611 3671 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3612 3672 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3613 3673 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3614 3674 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3615 3675 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
3616 3676 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
3617 3677 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
3618 3678 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
3619 3679 7.232330 ACTTATACTCCCTCCGTTCCTAAATAC 59.768 40.741 0.00 0.00 0.00 1.89
3620 3680 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
3621 3681 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
3622 3682 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3623 3683 5.103771 AGACTTATACTCCCTCCGTTCCTAA 60.104 44.000 0.00 0.00 0.00 2.69
3624 3684 4.414846 AGACTTATACTCCCTCCGTTCCTA 59.585 45.833 0.00 0.00 0.00 2.94
3625 3685 3.204831 AGACTTATACTCCCTCCGTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
3626 3686 3.564264 AGACTTATACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
3627 3687 5.360429 AGAAAGACTTATACTCCCTCCGTTC 59.640 44.000 0.00 0.00 0.00 3.95
3628 3688 5.270794 AGAAAGACTTATACTCCCTCCGTT 58.729 41.667 0.00 0.00 0.00 4.44
3629 3689 4.869451 AGAAAGACTTATACTCCCTCCGT 58.131 43.478 0.00 0.00 0.00 4.69
3630 3690 6.297582 TCTAGAAAGACTTATACTCCCTCCG 58.702 44.000 0.00 0.00 0.00 4.63
3631 3691 6.717997 CCTCTAGAAAGACTTATACTCCCTCC 59.282 46.154 0.00 0.00 0.00 4.30
3632 3692 7.519927 TCCTCTAGAAAGACTTATACTCCCTC 58.480 42.308 0.00 0.00 0.00 4.30
3633 3693 7.129816 ACTCCTCTAGAAAGACTTATACTCCCT 59.870 40.741 8.43 0.00 0.00 4.20
3634 3694 7.292319 ACTCCTCTAGAAAGACTTATACTCCC 58.708 42.308 8.43 0.00 0.00 4.30
3642 3702 9.984590 AAGACTTATACTCCTCTAGAAAGACTT 57.015 33.333 8.43 8.67 31.16 3.01
3643 3703 9.984590 AAAGACTTATACTCCTCTAGAAAGACT 57.015 33.333 8.43 3.76 0.00 3.24
3680 3740 9.419297 GCTCCGTATGTAGTTCATATTGAAATA 57.581 33.333 0.00 0.00 38.22 1.40
3684 3744 6.399639 TGCTCCGTATGTAGTTCATATTGA 57.600 37.500 0.00 0.00 40.54 2.57
3692 3752 5.730550 TCTCATTTTGCTCCGTATGTAGTT 58.269 37.500 0.00 0.00 0.00 2.24
3694 3754 5.592054 TCTCTCATTTTGCTCCGTATGTAG 58.408 41.667 0.00 0.00 0.00 2.74
3729 3843 8.557864 ACACACAGATGTATATAGACGTAGTTC 58.442 37.037 0.00 0.00 37.87 3.01
3802 3916 9.927081 ACTCCATCCATTTCTAAATATGTCTTT 57.073 29.630 0.00 0.00 0.00 2.52
3810 3924 9.927081 ATGTCTTTACTCCATCCATTTCTAAAT 57.073 29.630 0.00 0.00 0.00 1.40
3811 3925 9.396022 GATGTCTTTACTCCATCCATTTCTAAA 57.604 33.333 0.00 0.00 30.98 1.85
3812 3926 8.772250 AGATGTCTTTACTCCATCCATTTCTAA 58.228 33.333 0.00 0.00 36.48 2.10
3813 3927 8.324191 AGATGTCTTTACTCCATCCATTTCTA 57.676 34.615 0.00 0.00 36.48 2.10
3814 3928 7.205515 AGATGTCTTTACTCCATCCATTTCT 57.794 36.000 0.00 0.00 36.48 2.52
3815 3929 7.554118 TGAAGATGTCTTTACTCCATCCATTTC 59.446 37.037 0.00 0.00 36.48 2.17
3816 3930 7.405292 TGAAGATGTCTTTACTCCATCCATTT 58.595 34.615 0.00 0.00 36.48 2.32
3817 3931 6.962182 TGAAGATGTCTTTACTCCATCCATT 58.038 36.000 0.00 0.00 36.48 3.16
3818 3932 6.566079 TGAAGATGTCTTTACTCCATCCAT 57.434 37.500 0.00 0.00 36.48 3.41
3819 3933 6.013379 AGTTGAAGATGTCTTTACTCCATCCA 60.013 38.462 0.00 0.00 36.48 3.41
3820 3934 6.410540 AGTTGAAGATGTCTTTACTCCATCC 58.589 40.000 0.00 0.00 36.48 3.51
3821 3935 7.821846 AGAAGTTGAAGATGTCTTTACTCCATC 59.178 37.037 10.12 0.00 36.11 3.51
3822 3936 7.605691 CAGAAGTTGAAGATGTCTTTACTCCAT 59.394 37.037 10.12 0.00 36.11 3.41
3823 3937 6.931281 CAGAAGTTGAAGATGTCTTTACTCCA 59.069 38.462 10.12 0.00 36.11 3.86
3824 3938 6.931840 ACAGAAGTTGAAGATGTCTTTACTCC 59.068 38.462 10.12 1.61 36.11 3.85
3825 3939 7.439655 ACACAGAAGTTGAAGATGTCTTTACTC 59.560 37.037 10.12 6.33 36.11 2.59
3826 3940 7.225538 CACACAGAAGTTGAAGATGTCTTTACT 59.774 37.037 0.00 2.02 36.11 2.24
3827 3941 7.011482 ACACACAGAAGTTGAAGATGTCTTTAC 59.989 37.037 0.00 0.00 36.11 2.01
3828 3942 7.047891 ACACACAGAAGTTGAAGATGTCTTTA 58.952 34.615 0.00 0.00 36.11 1.85
3829 3943 5.882557 ACACACAGAAGTTGAAGATGTCTTT 59.117 36.000 0.00 0.00 36.11 2.52
3830 3944 5.431765 ACACACAGAAGTTGAAGATGTCTT 58.568 37.500 0.00 0.00 39.23 3.01
3831 3945 5.028549 ACACACAGAAGTTGAAGATGTCT 57.971 39.130 0.00 0.00 0.00 3.41
3832 3946 5.986135 ACTACACACAGAAGTTGAAGATGTC 59.014 40.000 0.00 0.00 0.00 3.06
3833 3947 5.918608 ACTACACACAGAAGTTGAAGATGT 58.081 37.500 0.00 0.00 0.00 3.06
3834 3948 6.479990 TGAACTACACACAGAAGTTGAAGATG 59.520 38.462 0.00 0.00 33.72 2.90
3835 3949 6.582636 TGAACTACACACAGAAGTTGAAGAT 58.417 36.000 0.00 0.00 33.72 2.40
3836 3950 5.972935 TGAACTACACACAGAAGTTGAAGA 58.027 37.500 0.00 0.00 33.72 2.87
3837 3951 6.851222 ATGAACTACACACAGAAGTTGAAG 57.149 37.500 0.00 0.00 33.72 3.02
3838 3952 8.902540 AATATGAACTACACACAGAAGTTGAA 57.097 30.769 0.00 0.00 33.72 2.69
3839 3953 9.990360 TTAATATGAACTACACACAGAAGTTGA 57.010 29.630 0.00 0.00 33.72 3.18
3906 4020 9.453830 ACTCCCTCCATTTCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
3911 4025 9.112658 CCCTTACTCCCTCCATTTCTAAATATA 57.887 37.037 0.00 0.00 0.00 0.86
3912 4026 7.476375 GCCCTTACTCCCTCCATTTCTAAATAT 60.476 40.741 0.00 0.00 0.00 1.28
3913 4027 6.183361 GCCCTTACTCCCTCCATTTCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
3914 4028 5.399152 GCCCTTACTCCCTCCATTTCTAAAT 60.399 44.000 0.00 0.00 0.00 1.40
3915 4029 4.079958 GCCCTTACTCCCTCCATTTCTAAA 60.080 45.833 0.00 0.00 0.00 1.85
3916 4030 3.458487 GCCCTTACTCCCTCCATTTCTAA 59.542 47.826 0.00 0.00 0.00 2.10
3917 4031 3.046374 GCCCTTACTCCCTCCATTTCTA 58.954 50.000 0.00 0.00 0.00 2.10
3918 4032 1.847088 GCCCTTACTCCCTCCATTTCT 59.153 52.381 0.00 0.00 0.00 2.52
3919 4033 1.564348 TGCCCTTACTCCCTCCATTTC 59.436 52.381 0.00 0.00 0.00 2.17
3920 4034 1.681229 TGCCCTTACTCCCTCCATTT 58.319 50.000 0.00 0.00 0.00 2.32
3921 4035 1.285078 GTTGCCCTTACTCCCTCCATT 59.715 52.381 0.00 0.00 0.00 3.16
3922 4036 0.919710 GTTGCCCTTACTCCCTCCAT 59.080 55.000 0.00 0.00 0.00 3.41
3923 4037 0.474854 TGTTGCCCTTACTCCCTCCA 60.475 55.000 0.00 0.00 0.00 3.86
3924 4038 0.919710 ATGTTGCCCTTACTCCCTCC 59.080 55.000 0.00 0.00 0.00 4.30
3925 4039 1.840635 AGATGTTGCCCTTACTCCCTC 59.159 52.381 0.00 0.00 0.00 4.30
3926 4040 1.972588 AGATGTTGCCCTTACTCCCT 58.027 50.000 0.00 0.00 0.00 4.20
3927 4041 2.026262 TGAAGATGTTGCCCTTACTCCC 60.026 50.000 0.00 0.00 0.00 4.30
3928 4042 3.350219 TGAAGATGTTGCCCTTACTCC 57.650 47.619 0.00 0.00 0.00 3.85
3929 4043 3.125316 CGTTGAAGATGTTGCCCTTACTC 59.875 47.826 0.00 0.00 0.00 2.59
3930 4044 3.074412 CGTTGAAGATGTTGCCCTTACT 58.926 45.455 0.00 0.00 0.00 2.24
3931 4045 2.161609 CCGTTGAAGATGTTGCCCTTAC 59.838 50.000 0.00 0.00 0.00 2.34
3932 4046 2.432444 CCGTTGAAGATGTTGCCCTTA 58.568 47.619 0.00 0.00 0.00 2.69
3933 4047 1.247567 CCGTTGAAGATGTTGCCCTT 58.752 50.000 0.00 0.00 0.00 3.95
3934 4048 1.244019 GCCGTTGAAGATGTTGCCCT 61.244 55.000 0.00 0.00 0.00 5.19
3935 4049 1.212751 GCCGTTGAAGATGTTGCCC 59.787 57.895 0.00 0.00 0.00 5.36
3936 4050 0.313672 TTGCCGTTGAAGATGTTGCC 59.686 50.000 0.00 0.00 0.00 4.52
3937 4051 2.253603 GATTGCCGTTGAAGATGTTGC 58.746 47.619 0.00 0.00 0.00 4.17
3938 4052 2.508867 CGATTGCCGTTGAAGATGTTG 58.491 47.619 0.00 0.00 0.00 3.33
3939 4053 1.135689 GCGATTGCCGTTGAAGATGTT 60.136 47.619 0.00 0.00 41.15 2.71
3940 4054 0.447801 GCGATTGCCGTTGAAGATGT 59.552 50.000 0.00 0.00 41.15 3.06
3941 4055 0.447406 TGCGATTGCCGTTGAAGATG 59.553 50.000 1.50 0.00 41.78 2.90
3942 4056 1.164411 TTGCGATTGCCGTTGAAGAT 58.836 45.000 1.50 0.00 41.78 2.40
3943 4057 0.947960 TTTGCGATTGCCGTTGAAGA 59.052 45.000 1.50 0.00 41.78 2.87
3944 4058 1.764851 TTTTGCGATTGCCGTTGAAG 58.235 45.000 1.50 0.00 41.78 3.02
3945 4059 2.209838 TTTTTGCGATTGCCGTTGAA 57.790 40.000 1.50 0.00 41.78 2.69
3946 4060 3.946950 TTTTTGCGATTGCCGTTGA 57.053 42.105 1.50 0.00 41.78 3.18
3961 4075 2.026542 GGGACGGATGTAGGAGGTTTTT 60.027 50.000 0.00 0.00 0.00 1.94
3962 4076 1.558294 GGGACGGATGTAGGAGGTTTT 59.442 52.381 0.00 0.00 0.00 2.43
3963 4077 1.201424 GGGACGGATGTAGGAGGTTT 58.799 55.000 0.00 0.00 0.00 3.27
3964 4078 0.690077 GGGGACGGATGTAGGAGGTT 60.690 60.000 0.00 0.00 0.00 3.50
3965 4079 1.075450 GGGGACGGATGTAGGAGGT 60.075 63.158 0.00 0.00 0.00 3.85
3966 4080 3.872431 GGGGACGGATGTAGGAGG 58.128 66.667 0.00 0.00 0.00 4.30
3993 4107 4.783621 TCCATGCCCGCAGACTGC 62.784 66.667 17.84 17.84 40.69 4.40
3994 4108 2.184830 CATCCATGCCCGCAGACTG 61.185 63.158 0.00 0.00 0.00 3.51
3995 4109 2.191375 CATCCATGCCCGCAGACT 59.809 61.111 0.00 0.00 0.00 3.24
4005 4119 2.280389 CGACCTCCCGCATCCATG 60.280 66.667 0.00 0.00 0.00 3.66
4006 4120 2.443952 TCGACCTCCCGCATCCAT 60.444 61.111 0.00 0.00 0.00 3.41
4007 4121 3.458163 GTCGACCTCCCGCATCCA 61.458 66.667 3.51 0.00 0.00 3.41
4008 4122 2.701163 GATGTCGACCTCCCGCATCC 62.701 65.000 14.12 0.00 37.24 3.51
4009 4123 1.300233 GATGTCGACCTCCCGCATC 60.300 63.158 14.12 3.59 36.63 3.91
4010 4124 2.797278 GGATGTCGACCTCCCGCAT 61.797 63.158 24.77 5.42 0.00 4.73
4011 4125 3.458163 GGATGTCGACCTCCCGCA 61.458 66.667 24.77 0.20 0.00 5.69
4012 4126 3.014085 TTGGATGTCGACCTCCCGC 62.014 63.158 29.80 11.72 30.70 6.13
4013 4127 1.153628 GTTGGATGTCGACCTCCCG 60.154 63.158 29.80 0.00 30.70 5.14
4014 4128 1.153628 CGTTGGATGTCGACCTCCC 60.154 63.158 29.80 20.09 30.70 4.30
4015 4129 1.810030 GCGTTGGATGTCGACCTCC 60.810 63.158 27.40 27.40 0.00 4.30
4016 4130 0.454600 TAGCGTTGGATGTCGACCTC 59.545 55.000 14.12 12.91 0.00 3.85
4017 4131 0.456221 CTAGCGTTGGATGTCGACCT 59.544 55.000 14.12 2.19 0.00 3.85
4018 4132 1.146358 GCTAGCGTTGGATGTCGACC 61.146 60.000 14.12 0.00 0.00 4.79
4019 4133 1.146358 GGCTAGCGTTGGATGTCGAC 61.146 60.000 9.11 9.11 0.00 4.20
4020 4134 1.141019 GGCTAGCGTTGGATGTCGA 59.859 57.895 9.00 0.00 0.00 4.20
4021 4135 2.230940 CGGCTAGCGTTGGATGTCG 61.231 63.158 9.00 0.00 0.00 4.35
4022 4136 0.101759 TACGGCTAGCGTTGGATGTC 59.898 55.000 15.48 0.00 0.00 3.06
4023 4137 0.750850 ATACGGCTAGCGTTGGATGT 59.249 50.000 15.48 5.46 0.00 3.06
4024 4138 2.287970 TGTATACGGCTAGCGTTGGATG 60.288 50.000 15.48 0.17 0.00 3.51
4025 4139 1.958579 TGTATACGGCTAGCGTTGGAT 59.041 47.619 15.48 9.69 0.00 3.41
4026 4140 1.391577 TGTATACGGCTAGCGTTGGA 58.608 50.000 15.48 2.86 0.00 3.53
4027 4141 2.433868 ATGTATACGGCTAGCGTTGG 57.566 50.000 15.48 5.10 0.00 3.77
4028 4142 4.269123 TGAAAATGTATACGGCTAGCGTTG 59.731 41.667 15.48 7.90 0.00 4.10
4029 4143 4.269363 GTGAAAATGTATACGGCTAGCGTT 59.731 41.667 15.48 4.91 0.00 4.84
4030 4144 3.800506 GTGAAAATGTATACGGCTAGCGT 59.199 43.478 9.00 12.55 0.00 5.07
4031 4145 3.799963 TGTGAAAATGTATACGGCTAGCG 59.200 43.478 9.00 6.83 0.00 4.26
4032 4146 5.728351 TTGTGAAAATGTATACGGCTAGC 57.272 39.130 6.04 6.04 0.00 3.42
4033 4147 9.042008 AGTTATTGTGAAAATGTATACGGCTAG 57.958 33.333 0.00 0.00 0.00 3.42
4034 4148 8.951787 AGTTATTGTGAAAATGTATACGGCTA 57.048 30.769 0.00 0.00 0.00 3.93
4035 4149 7.551262 TGAGTTATTGTGAAAATGTATACGGCT 59.449 33.333 0.00 0.00 0.00 5.52
4036 4150 7.690228 TGAGTTATTGTGAAAATGTATACGGC 58.310 34.615 0.00 0.00 0.00 5.68
4043 4157 9.260002 GATTGGTTTGAGTTATTGTGAAAATGT 57.740 29.630 0.00 0.00 0.00 2.71
4044 4158 8.427012 CGATTGGTTTGAGTTATTGTGAAAATG 58.573 33.333 0.00 0.00 0.00 2.32
4045 4159 8.356657 TCGATTGGTTTGAGTTATTGTGAAAAT 58.643 29.630 0.00 0.00 0.00 1.82
4046 4160 7.708051 TCGATTGGTTTGAGTTATTGTGAAAA 58.292 30.769 0.00 0.00 0.00 2.29
4047 4161 7.265647 TCGATTGGTTTGAGTTATTGTGAAA 57.734 32.000 0.00 0.00 0.00 2.69
4048 4162 6.869315 TCGATTGGTTTGAGTTATTGTGAA 57.131 33.333 0.00 0.00 0.00 3.18
4049 4163 6.869315 TTCGATTGGTTTGAGTTATTGTGA 57.131 33.333 0.00 0.00 0.00 3.58
4050 4164 7.304735 TCATTCGATTGGTTTGAGTTATTGTG 58.695 34.615 7.42 0.00 0.00 3.33
4051 4165 7.447374 TCATTCGATTGGTTTGAGTTATTGT 57.553 32.000 7.42 0.00 0.00 2.71
4052 4166 8.741101 TTTCATTCGATTGGTTTGAGTTATTG 57.259 30.769 7.42 0.00 0.00 1.90
4053 4167 9.927668 AATTTCATTCGATTGGTTTGAGTTATT 57.072 25.926 7.42 0.00 0.00 1.40
4054 4168 9.927668 AAATTTCATTCGATTGGTTTGAGTTAT 57.072 25.926 7.42 0.00 0.00 1.89
4055 4169 9.190858 CAAATTTCATTCGATTGGTTTGAGTTA 57.809 29.630 18.25 0.00 0.00 2.24
4056 4170 7.710475 ACAAATTTCATTCGATTGGTTTGAGTT 59.290 29.630 23.90 11.16 0.00 3.01
4057 4171 7.169645 CACAAATTTCATTCGATTGGTTTGAGT 59.830 33.333 23.90 11.08 0.00 3.41
4058 4172 7.503991 CACAAATTTCATTCGATTGGTTTGAG 58.496 34.615 23.90 17.98 0.00 3.02
4059 4173 6.073873 GCACAAATTTCATTCGATTGGTTTGA 60.074 34.615 23.90 7.30 0.00 2.69
4060 4174 6.072733 GCACAAATTTCATTCGATTGGTTTG 58.927 36.000 19.79 19.79 0.00 2.93
4061 4175 5.757320 TGCACAAATTTCATTCGATTGGTTT 59.243 32.000 7.42 4.56 0.00 3.27
4062 4176 5.295950 TGCACAAATTTCATTCGATTGGTT 58.704 33.333 7.42 0.00 0.00 3.67
4063 4177 4.880759 TGCACAAATTTCATTCGATTGGT 58.119 34.783 7.42 0.00 0.00 3.67
4064 4178 5.842619 TTGCACAAATTTCATTCGATTGG 57.157 34.783 7.42 0.00 0.00 3.16
4065 4179 6.570789 GTGTTTGCACAAATTTCATTCGATTG 59.429 34.615 0.00 0.78 44.64 2.67
4066 4180 6.561902 CGTGTTTGCACAAATTTCATTCGATT 60.562 34.615 0.00 0.00 45.50 3.34
4067 4181 5.107913 CGTGTTTGCACAAATTTCATTCGAT 60.108 36.000 0.00 0.00 45.50 3.59
4068 4182 4.205996 CGTGTTTGCACAAATTTCATTCGA 59.794 37.500 0.00 0.00 45.50 3.71
4069 4183 4.435693 CGTGTTTGCACAAATTTCATTCG 58.564 39.130 0.00 0.00 45.50 3.34
4070 4184 4.269844 ACCGTGTTTGCACAAATTTCATTC 59.730 37.500 0.00 0.00 45.50 2.67
4071 4185 4.033817 CACCGTGTTTGCACAAATTTCATT 59.966 37.500 0.00 0.00 45.50 2.57
4072 4186 3.555139 CACCGTGTTTGCACAAATTTCAT 59.445 39.130 0.00 0.00 45.50 2.57
4073 4187 2.926200 CACCGTGTTTGCACAAATTTCA 59.074 40.909 0.00 0.00 45.50 2.69
4074 4188 3.182967 TCACCGTGTTTGCACAAATTTC 58.817 40.909 0.00 0.00 45.50 2.17
4075 4189 3.238108 TCACCGTGTTTGCACAAATTT 57.762 38.095 0.00 0.00 45.50 1.82
4076 4190 2.949451 TCACCGTGTTTGCACAAATT 57.051 40.000 0.00 0.00 45.50 1.82
4077 4191 2.949451 TTCACCGTGTTTGCACAAAT 57.051 40.000 0.00 0.00 45.50 2.32
4078 4192 2.949451 ATTCACCGTGTTTGCACAAA 57.051 40.000 0.00 0.00 45.50 2.83
4079 4193 2.949451 AATTCACCGTGTTTGCACAA 57.051 40.000 0.00 0.00 45.50 3.33
4080 4194 2.926200 CAAAATTCACCGTGTTTGCACA 59.074 40.909 0.00 0.00 45.50 4.57
4081 4195 3.182967 TCAAAATTCACCGTGTTTGCAC 58.817 40.909 7.78 0.00 41.97 4.57
4082 4196 3.510388 TCAAAATTCACCGTGTTTGCA 57.490 38.095 7.78 0.00 32.27 4.08
4083 4197 7.804614 TTATATCAAAATTCACCGTGTTTGC 57.195 32.000 7.78 0.00 32.27 3.68
4084 4198 9.186323 TGTTTATATCAAAATTCACCGTGTTTG 57.814 29.630 0.00 2.92 33.26 2.93
4085 4199 9.921637 ATGTTTATATCAAAATTCACCGTGTTT 57.078 25.926 0.00 0.00 0.00 2.83
4086 4200 9.352784 CATGTTTATATCAAAATTCACCGTGTT 57.647 29.630 0.00 0.00 0.00 3.32
4087 4201 8.735315 TCATGTTTATATCAAAATTCACCGTGT 58.265 29.630 0.00 0.00 0.00 4.49
4088 4202 9.009327 GTCATGTTTATATCAAAATTCACCGTG 57.991 33.333 0.00 0.00 0.00 4.94
4089 4203 7.908082 CGTCATGTTTATATCAAAATTCACCGT 59.092 33.333 0.00 0.00 0.00 4.83
4090 4204 7.375808 CCGTCATGTTTATATCAAAATTCACCG 59.624 37.037 0.00 0.00 0.00 4.94
4091 4205 8.402472 TCCGTCATGTTTATATCAAAATTCACC 58.598 33.333 0.00 0.00 0.00 4.02
4092 4206 9.950680 ATCCGTCATGTTTATATCAAAATTCAC 57.049 29.630 0.00 0.00 0.00 3.18
4111 4241 6.198650 TCGTACTTTCAATAAGATCCGTCA 57.801 37.500 0.00 0.00 0.00 4.35
4113 4243 9.760077 AATTATCGTACTTTCAATAAGATCCGT 57.240 29.630 0.00 0.00 0.00 4.69
4131 4261 9.403110 GTCCGAGTTATATGTACAAATTATCGT 57.597 33.333 0.00 0.00 0.00 3.73
4143 4273 9.228949 AGACGAAATATAGTCCGAGTTATATGT 57.771 33.333 0.00 0.00 38.08 2.29
4144 4274 9.491934 CAGACGAAATATAGTCCGAGTTATATG 57.508 37.037 0.00 0.00 38.08 1.78
4145 4275 8.675504 CCAGACGAAATATAGTCCGAGTTATAT 58.324 37.037 0.00 0.00 38.08 0.86
4146 4276 7.663081 ACCAGACGAAATATAGTCCGAGTTATA 59.337 37.037 0.00 0.00 38.08 0.98
4147 4277 6.489361 ACCAGACGAAATATAGTCCGAGTTAT 59.511 38.462 0.00 0.00 38.08 1.89
4148 4278 5.824624 ACCAGACGAAATATAGTCCGAGTTA 59.175 40.000 0.00 0.00 38.08 2.24
4149 4279 4.643784 ACCAGACGAAATATAGTCCGAGTT 59.356 41.667 0.00 0.00 38.08 3.01
4150 4280 4.036498 CACCAGACGAAATATAGTCCGAGT 59.964 45.833 0.00 0.00 38.08 4.18
4151 4281 4.275196 TCACCAGACGAAATATAGTCCGAG 59.725 45.833 0.00 0.00 38.08 4.63
4152 4282 4.201657 TCACCAGACGAAATATAGTCCGA 58.798 43.478 0.00 0.00 38.08 4.55
4153 4283 4.563337 TCACCAGACGAAATATAGTCCG 57.437 45.455 0.00 0.00 38.08 4.79
4156 4286 8.786826 TTTTGATTCACCAGACGAAATATAGT 57.213 30.769 0.00 0.00 0.00 2.12
4159 4289 7.176690 AGGTTTTTGATTCACCAGACGAAATAT 59.823 33.333 0.00 0.00 32.43 1.28
4160 4290 6.488683 AGGTTTTTGATTCACCAGACGAAATA 59.511 34.615 0.00 0.00 32.43 1.40
4161 4291 5.301805 AGGTTTTTGATTCACCAGACGAAAT 59.698 36.000 0.00 0.00 32.43 2.17
4162 4292 4.642885 AGGTTTTTGATTCACCAGACGAAA 59.357 37.500 0.00 0.00 32.43 3.46
4165 4295 5.682943 TTAGGTTTTTGATTCACCAGACG 57.317 39.130 0.00 0.00 32.43 4.18
4193 4334 7.234988 AGCGTGAAGTATAGGATAATAGGGTTT 59.765 37.037 0.00 0.00 0.00 3.27
4206 4347 2.355132 ACGAGGTCAGCGTGAAGTATAG 59.645 50.000 0.00 0.00 40.94 1.31
4214 4355 2.202623 GGCTACGAGGTCAGCGTG 60.203 66.667 0.00 0.00 42.62 5.34
4218 4359 1.204704 TGACATTGGCTACGAGGTCAG 59.795 52.381 0.00 0.00 44.42 3.51
4272 4413 2.049433 CAAGCCCGACGACGAGTT 60.049 61.111 9.28 0.00 42.66 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.