Multiple sequence alignment - TraesCS1B01G137100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G137100 chr1B 100.000 5987 0 0 1 5987 174985084 174991070 0.000000e+00 11057.0
1 TraesCS1B01G137100 chr1B 93.190 279 14 5 5049 5322 307151112 307150834 7.230000e-109 405.0
2 TraesCS1B01G137100 chr1B 90.083 242 6 3 3135 3376 174988002 174988225 1.260000e-76 298.0
3 TraesCS1B01G137100 chr1B 90.083 242 6 3 2919 3142 174988218 174988459 1.260000e-76 298.0
4 TraesCS1B01G137100 chr1B 92.655 177 13 0 2732 2908 174987626 174987802 7.700000e-64 255.0
5 TraesCS1B01G137100 chr1B 92.655 177 13 0 2543 2719 174987815 174987991 7.700000e-64 255.0
6 TraesCS1B01G137100 chr1B 89.552 134 14 0 2455 2588 174987187 174987320 2.870000e-38 171.0
7 TraesCS1B01G137100 chr1B 89.552 134 14 0 2104 2237 174987538 174987671 2.870000e-38 171.0
8 TraesCS1B01G137100 chr1A 95.624 2765 87 10 3135 5882 124480410 124483157 0.000000e+00 4405.0
9 TraesCS1B01G137100 chr1A 92.988 2738 119 27 447 3142 124477945 124480651 0.000000e+00 3925.0
10 TraesCS1B01G137100 chr1A 94.350 177 10 0 2732 2908 124480034 124480210 7.650000e-69 272.0
11 TraesCS1B01G137100 chr1A 90.909 176 16 0 2544 2719 124480224 124480399 2.790000e-58 237.0
12 TraesCS1B01G137100 chr1A 89.241 158 17 0 2455 2612 124479580 124479737 1.320000e-46 198.0
13 TraesCS1B01G137100 chr1A 89.630 135 14 0 2103 2237 124479945 124480079 7.980000e-39 172.0
14 TraesCS1B01G137100 chr1A 94.286 70 4 0 2732 2801 124479668 124479737 2.280000e-19 108.0
15 TraesCS1B01G137100 chr1D 92.593 2781 120 25 320 3074 114152496 114155216 0.000000e+00 3916.0
16 TraesCS1B01G137100 chr1D 98.362 2198 33 3 3073 5268 114155248 114157444 0.000000e+00 3856.0
17 TraesCS1B01G137100 chr1D 91.185 363 12 6 5236 5582 114157441 114157799 5.430000e-130 475.0
18 TraesCS1B01G137100 chr1D 94.983 299 15 0 5584 5882 114163210 114163508 2.530000e-128 470.0
19 TraesCS1B01G137100 chr1D 91.440 257 7 1 3135 3376 114155061 114155317 7.430000e-89 339.0
20 TraesCS1B01G137100 chr1D 92.405 237 18 0 86 322 451041723 451041959 7.430000e-89 339.0
21 TraesCS1B01G137100 chr1D 90.717 237 17 4 86 319 475892892 475893126 1.620000e-80 311.0
22 TraesCS1B01G137100 chr1D 90.171 234 22 1 88 320 84708891 84709124 2.710000e-78 303.0
23 TraesCS1B01G137100 chr1D 95.429 175 8 0 2733 2907 114154701 114154875 4.570000e-71 279.0
24 TraesCS1B01G137100 chr1D 88.017 242 11 5 2919 3142 114155310 114155551 2.750000e-68 270.0
25 TraesCS1B01G137100 chr1D 88.608 158 18 0 2455 2612 114154246 114154403 6.120000e-45 193.0
26 TraesCS1B01G137100 chr1D 89.630 135 14 0 2103 2237 114154611 114154745 7.980000e-39 172.0
27 TraesCS1B01G137100 chr5A 86.345 498 33 18 4835 5322 66097919 66097447 1.490000e-140 510.0
28 TraesCS1B01G137100 chr5A 94.421 233 13 0 88 320 300629352 300629584 5.710000e-95 359.0
29 TraesCS1B01G137100 chr7A 86.094 489 33 17 4844 5322 450288013 450287550 1.500000e-135 494.0
30 TraesCS1B01G137100 chr7A 89.831 295 22 7 5028 5314 117820833 117821127 7.330000e-99 372.0
31 TraesCS1B01G137100 chr7A 90.291 206 10 4 4835 5036 117820671 117820870 1.660000e-65 261.0
32 TraesCS1B01G137100 chr7A 97.143 105 3 0 5883 5987 670537825 670537929 1.710000e-40 178.0
33 TraesCS1B01G137100 chr5B 98.760 242 2 1 85 326 491990555 491990795 4.290000e-116 429.0
34 TraesCS1B01G137100 chr5B 95.536 112 5 0 5876 5987 692212365 692212476 4.770000e-41 180.0
35 TraesCS1B01G137100 chr7B 98.701 231 3 0 88 318 73163835 73163605 1.550000e-110 411.0
36 TraesCS1B01G137100 chr7B 94.737 114 5 1 5875 5987 535828399 535828512 6.170000e-40 176.0
37 TraesCS1B01G137100 chr7B 92.000 125 7 3 5865 5987 167036383 167036506 7.980000e-39 172.0
38 TraesCS1B01G137100 chr3B 93.007 286 13 6 5041 5319 146565497 146565782 1.550000e-110 411.0
39 TraesCS1B01G137100 chr3B 93.548 279 11 7 5049 5322 736001510 736001234 5.590000e-110 409.0
40 TraesCS1B01G137100 chr3B 97.170 106 3 0 5882 5987 16698002 16698107 4.770000e-41 180.0
41 TraesCS1B01G137100 chr3A 93.991 233 14 0 89 321 496059020 496058788 2.650000e-93 353.0
42 TraesCS1B01G137100 chr3A 93.506 231 15 0 88 318 90874513 90874743 1.600000e-90 344.0
43 TraesCS1B01G137100 chr3A 92.735 234 16 1 86 319 561059810 561060042 2.670000e-88 337.0
44 TraesCS1B01G137100 chr3A 92.157 51 4 0 5459 5509 501650573 501650523 8.320000e-09 73.1
45 TraesCS1B01G137100 chr6A 93.939 231 14 0 88 318 596389688 596389458 3.430000e-92 350.0
46 TraesCS1B01G137100 chr4B 91.903 247 10 5 5082 5322 45780574 45780332 2.670000e-88 337.0
47 TraesCS1B01G137100 chr4B 90.638 235 22 0 90 324 639119816 639120050 4.500000e-81 313.0
48 TraesCS1B01G137100 chr4B 95.575 113 4 1 5876 5987 562683130 562683018 4.770000e-41 180.0
49 TraesCS1B01G137100 chr4B 97.143 105 3 0 5883 5987 546671757 546671861 1.710000e-40 178.0
50 TraesCS1B01G137100 chr4B 92.241 116 9 0 86 201 508820134 508820249 1.330000e-36 165.0
51 TraesCS1B01G137100 chr4B 92.727 55 4 0 5459 5513 191659386 191659332 4.970000e-11 80.5
52 TraesCS1B01G137100 chr2A 93.013 229 16 0 90 318 37307648 37307876 9.610000e-88 335.0
53 TraesCS1B01G137100 chr6B 92.070 227 17 1 94 320 214031854 214031629 9.680000e-83 318.0
54 TraesCS1B01G137100 chr6B 89.167 240 25 1 88 326 22894002 22894241 1.260000e-76 298.0
55 TraesCS1B01G137100 chr5D 90.987 233 21 0 88 320 45668010 45667778 1.250000e-81 315.0
56 TraesCS1B01G137100 chr5D 90.476 231 21 1 89 319 308459463 308459692 2.710000e-78 303.0
57 TraesCS1B01G137100 chr5D 89.177 231 13 5 94 320 480197588 480197366 1.640000e-70 278.0
58 TraesCS1B01G137100 chr5D 94.000 50 3 0 5459 5508 354874398 354874447 6.430000e-10 76.8
59 TraesCS1B01G137100 chr4D 89.362 235 25 0 90 324 497892188 497892422 4.540000e-76 296.0
60 TraesCS1B01G137100 chr2D 95.575 113 3 2 5877 5987 91047450 91047338 4.770000e-41 180.0
61 TraesCS1B01G137100 chr2D 78.972 214 21 11 87 299 503439552 503439362 2.270000e-24 124.0
62 TraesCS1B01G137100 chr2B 97.143 105 3 0 5883 5987 67453394 67453498 1.710000e-40 178.0
63 TraesCS1B01G137100 chr2B 97.778 45 1 0 5472 5516 614917183 614917227 1.790000e-10 78.7
64 TraesCS1B01G137100 chr4A 89.655 58 6 0 5459 5516 4868445 4868388 2.310000e-09 75.0
65 TraesCS1B01G137100 chr4A 87.302 63 6 2 5473 5533 269994905 269994843 2.990000e-08 71.3
66 TraesCS1B01G137100 chr6D 92.308 52 3 1 5459 5509 15347991 15347940 8.320000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G137100 chr1B 174985084 174991070 5986 False 1786.428571 11057 92.082857 1 5987 7 chr1B.!!$F1 5986
1 TraesCS1B01G137100 chr1A 124477945 124483157 5212 False 1331.000000 4405 92.432571 447 5882 7 chr1A.!!$F1 5435
2 TraesCS1B01G137100 chr1D 114152496 114157799 5303 False 1187.500000 3916 91.908000 320 5582 8 chr1D.!!$F5 5262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 307 0.040499 GGGTGAGTTGGGGGCATAAA 59.960 55.0 0.00 0.0 0.00 1.40 F
1274 1310 0.034896 GGGGATGATGTCGCGGTATT 59.965 55.0 6.13 0.0 40.50 1.89 F
2330 2381 0.030908 GAGATTCGTACGGAGCCTGG 59.969 60.0 16.52 0.0 0.00 4.45 F
2750 2801 0.247460 GAAGGCAATTCACCCAAGGC 59.753 55.0 0.00 0.0 37.88 4.35 F
3547 3631 0.452184 TTCGCTGAAGAGCCGTAGAG 59.548 55.0 0.00 0.0 42.91 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2166 0.617820 ATACACTCTCCCCCTTGCGT 60.618 55.000 0.00 0.0 0.00 5.24 R
2572 2623 1.022903 AGGGGATCTTCAGGAGGAGT 58.977 55.000 0.00 0.0 0.00 3.85 R
3585 3669 0.541998 GCCCCTGTTTGGTAAAGCCT 60.542 55.000 0.00 0.0 38.35 4.58 R
4673 4757 0.980231 AGAGCGAGGGCCAGAAGAAT 60.980 55.000 6.18 0.0 41.24 2.40 R
5103 5187 1.609072 GGTTGAAAGAGGAGGCAACAC 59.391 52.381 0.00 0.0 41.65 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.959583 ATACCCTCTTTAGACTTGGGAAG 57.040 43.478 8.99 0.00 40.23 3.46
23 24 3.599348 ACCCTCTTTAGACTTGGGAAGT 58.401 45.455 8.99 0.00 46.38 3.01
36 37 4.963628 ACTTGGGAAGTCTAGTCTTATCCC 59.036 45.833 15.95 15.95 37.02 3.85
37 38 4.620086 TGGGAAGTCTAGTCTTATCCCA 57.380 45.455 19.67 19.67 38.38 4.37
38 39 4.547671 TGGGAAGTCTAGTCTTATCCCAG 58.452 47.826 19.67 0.00 36.90 4.45
39 40 3.322541 GGGAAGTCTAGTCTTATCCCAGC 59.677 52.174 17.25 0.00 33.95 4.85
40 41 4.219919 GGAAGTCTAGTCTTATCCCAGCT 58.780 47.826 2.04 0.00 0.00 4.24
41 42 4.651962 GGAAGTCTAGTCTTATCCCAGCTT 59.348 45.833 2.04 0.00 0.00 3.74
42 43 5.834204 GGAAGTCTAGTCTTATCCCAGCTTA 59.166 44.000 2.04 0.00 0.00 3.09
43 44 6.495526 GGAAGTCTAGTCTTATCCCAGCTTAT 59.504 42.308 2.04 0.00 0.00 1.73
44 45 6.909550 AGTCTAGTCTTATCCCAGCTTATG 57.090 41.667 0.00 0.00 0.00 1.90
45 46 5.245075 AGTCTAGTCTTATCCCAGCTTATGC 59.755 44.000 0.00 0.00 40.05 3.14
46 47 3.393089 AGTCTTATCCCAGCTTATGCG 57.607 47.619 0.00 0.00 45.42 4.73
47 48 2.037772 AGTCTTATCCCAGCTTATGCGG 59.962 50.000 0.00 0.43 45.42 5.69
52 53 4.319133 CCAGCTTATGCGGGTGTT 57.681 55.556 11.02 0.00 47.00 3.32
53 54 1.802636 CCAGCTTATGCGGGTGTTG 59.197 57.895 11.02 0.00 47.00 3.33
54 55 0.676466 CCAGCTTATGCGGGTGTTGA 60.676 55.000 11.02 0.00 47.00 3.18
55 56 1.382522 CAGCTTATGCGGGTGTTGAT 58.617 50.000 0.00 0.00 45.42 2.57
56 57 1.745087 CAGCTTATGCGGGTGTTGATT 59.255 47.619 0.00 0.00 45.42 2.57
57 58 2.164219 CAGCTTATGCGGGTGTTGATTT 59.836 45.455 0.00 0.00 45.42 2.17
58 59 2.164219 AGCTTATGCGGGTGTTGATTTG 59.836 45.455 0.00 0.00 45.42 2.32
59 60 2.163412 GCTTATGCGGGTGTTGATTTGA 59.837 45.455 0.00 0.00 0.00 2.69
60 61 3.181487 GCTTATGCGGGTGTTGATTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
61 62 4.036262 GCTTATGCGGGTGTTGATTTGATA 59.964 41.667 0.00 0.00 0.00 2.15
62 63 5.493133 TTATGCGGGTGTTGATTTGATAC 57.507 39.130 0.00 0.00 0.00 2.24
63 64 3.066291 TGCGGGTGTTGATTTGATACT 57.934 42.857 0.00 0.00 0.00 2.12
64 65 3.417101 TGCGGGTGTTGATTTGATACTT 58.583 40.909 0.00 0.00 0.00 2.24
65 66 4.580868 TGCGGGTGTTGATTTGATACTTA 58.419 39.130 0.00 0.00 0.00 2.24
66 67 4.393680 TGCGGGTGTTGATTTGATACTTAC 59.606 41.667 0.00 0.00 0.00 2.34
67 68 4.201881 GCGGGTGTTGATTTGATACTTACC 60.202 45.833 0.00 0.00 0.00 2.85
68 69 4.033587 CGGGTGTTGATTTGATACTTACCG 59.966 45.833 0.00 0.00 0.00 4.02
69 70 5.180271 GGGTGTTGATTTGATACTTACCGA 58.820 41.667 0.00 0.00 0.00 4.69
70 71 5.293569 GGGTGTTGATTTGATACTTACCGAG 59.706 44.000 0.00 0.00 0.00 4.63
71 72 5.873164 GGTGTTGATTTGATACTTACCGAGT 59.127 40.000 0.00 0.00 42.55 4.18
72 73 6.370718 GGTGTTGATTTGATACTTACCGAGTT 59.629 38.462 0.00 0.00 39.86 3.01
73 74 7.412672 GGTGTTGATTTGATACTTACCGAGTTC 60.413 40.741 0.00 0.00 39.86 3.01
74 75 6.309494 TGTTGATTTGATACTTACCGAGTTCG 59.691 38.462 0.00 0.00 39.86 3.95
75 76 4.802039 TGATTTGATACTTACCGAGTTCGC 59.198 41.667 0.00 0.00 39.86 4.70
76 77 3.853831 TTGATACTTACCGAGTTCGCA 57.146 42.857 0.00 0.00 39.86 5.10
77 78 3.141002 TGATACTTACCGAGTTCGCAC 57.859 47.619 0.00 0.00 39.86 5.34
78 79 2.159338 TGATACTTACCGAGTTCGCACC 60.159 50.000 0.00 0.00 39.86 5.01
79 80 0.168788 TACTTACCGAGTTCGCACCG 59.831 55.000 0.00 0.00 39.86 4.94
81 82 3.285523 TTACCGAGTTCGCACCGGG 62.286 63.158 16.37 5.53 46.83 5.73
83 84 4.143333 CCGAGTTCGCACCGGGAT 62.143 66.667 6.32 0.00 39.59 3.85
84 85 2.885644 CGAGTTCGCACCGGGATG 60.886 66.667 6.32 0.00 0.00 3.51
85 86 2.264794 GAGTTCGCACCGGGATGT 59.735 61.111 6.32 0.00 0.00 3.06
86 87 1.514087 GAGTTCGCACCGGGATGTA 59.486 57.895 6.32 0.00 0.00 2.29
87 88 0.108520 GAGTTCGCACCGGGATGTAA 60.109 55.000 6.32 0.00 0.00 2.41
88 89 0.108329 AGTTCGCACCGGGATGTAAG 60.108 55.000 6.32 0.00 0.00 2.34
89 90 1.087771 GTTCGCACCGGGATGTAAGG 61.088 60.000 6.32 0.00 0.00 2.69
90 91 2.203015 CGCACCGGGATGTAAGGG 60.203 66.667 6.32 0.00 0.00 3.95
91 92 2.995547 GCACCGGGATGTAAGGGT 59.004 61.111 6.32 0.00 0.00 4.34
92 93 4.954933 CACCGGGATGTAAGGGTG 57.045 61.111 6.32 0.00 43.41 4.61
93 94 1.988015 CACCGGGATGTAAGGGTGT 59.012 57.895 6.32 0.00 43.82 4.16
94 95 0.392461 CACCGGGATGTAAGGGTGTG 60.392 60.000 6.32 0.00 43.82 3.82
95 96 0.838987 ACCGGGATGTAAGGGTGTGT 60.839 55.000 6.32 0.00 0.00 3.72
96 97 0.326927 CCGGGATGTAAGGGTGTGTT 59.673 55.000 0.00 0.00 0.00 3.32
97 98 1.271707 CCGGGATGTAAGGGTGTGTTT 60.272 52.381 0.00 0.00 0.00 2.83
98 99 1.810151 CGGGATGTAAGGGTGTGTTTG 59.190 52.381 0.00 0.00 0.00 2.93
99 100 2.167662 GGGATGTAAGGGTGTGTTTGG 58.832 52.381 0.00 0.00 0.00 3.28
100 101 2.490168 GGGATGTAAGGGTGTGTTTGGT 60.490 50.000 0.00 0.00 0.00 3.67
101 102 3.227614 GGATGTAAGGGTGTGTTTGGTT 58.772 45.455 0.00 0.00 0.00 3.67
102 103 3.254903 GGATGTAAGGGTGTGTTTGGTTC 59.745 47.826 0.00 0.00 0.00 3.62
103 104 3.655615 TGTAAGGGTGTGTTTGGTTCT 57.344 42.857 0.00 0.00 0.00 3.01
104 105 3.970842 TGTAAGGGTGTGTTTGGTTCTT 58.029 40.909 0.00 0.00 0.00 2.52
105 106 3.697045 TGTAAGGGTGTGTTTGGTTCTTG 59.303 43.478 0.00 0.00 0.00 3.02
106 107 1.111277 AGGGTGTGTTTGGTTCTTGC 58.889 50.000 0.00 0.00 0.00 4.01
107 108 0.104120 GGGTGTGTTTGGTTCTTGCC 59.896 55.000 0.00 0.00 0.00 4.52
108 109 0.104120 GGTGTGTTTGGTTCTTGCCC 59.896 55.000 0.00 0.00 0.00 5.36
109 110 0.248866 GTGTGTTTGGTTCTTGCCCG 60.249 55.000 0.00 0.00 0.00 6.13
110 111 0.681564 TGTGTTTGGTTCTTGCCCGT 60.682 50.000 0.00 0.00 0.00 5.28
111 112 1.310904 GTGTTTGGTTCTTGCCCGTA 58.689 50.000 0.00 0.00 0.00 4.02
112 113 1.265905 GTGTTTGGTTCTTGCCCGTAG 59.734 52.381 0.00 0.00 0.00 3.51
113 114 1.141254 TGTTTGGTTCTTGCCCGTAGA 59.859 47.619 0.00 0.00 0.00 2.59
114 115 2.224670 TGTTTGGTTCTTGCCCGTAGAT 60.225 45.455 0.00 0.00 0.00 1.98
115 116 2.107950 TTGGTTCTTGCCCGTAGATG 57.892 50.000 0.00 0.00 0.00 2.90
116 117 0.392461 TGGTTCTTGCCCGTAGATGC 60.392 55.000 0.00 0.00 0.00 3.91
117 118 1.095807 GGTTCTTGCCCGTAGATGCC 61.096 60.000 0.00 0.00 0.00 4.40
118 119 1.095807 GTTCTTGCCCGTAGATGCCC 61.096 60.000 0.00 0.00 0.00 5.36
119 120 1.271840 TTCTTGCCCGTAGATGCCCT 61.272 55.000 0.00 0.00 0.00 5.19
120 121 1.524621 CTTGCCCGTAGATGCCCTG 60.525 63.158 0.00 0.00 0.00 4.45
121 122 3.697439 TTGCCCGTAGATGCCCTGC 62.697 63.158 0.00 0.00 0.00 4.85
122 123 4.937431 GCCCGTAGATGCCCTGCC 62.937 72.222 0.00 0.00 0.00 4.85
123 124 3.479203 CCCGTAGATGCCCTGCCA 61.479 66.667 0.00 0.00 0.00 4.92
124 125 2.589540 CCGTAGATGCCCTGCCAA 59.410 61.111 0.00 0.00 0.00 4.52
125 126 1.149174 CCGTAGATGCCCTGCCAAT 59.851 57.895 0.00 0.00 0.00 3.16
126 127 0.396435 CCGTAGATGCCCTGCCAATA 59.604 55.000 0.00 0.00 0.00 1.90
127 128 1.003580 CCGTAGATGCCCTGCCAATAT 59.996 52.381 0.00 0.00 0.00 1.28
128 129 2.553028 CCGTAGATGCCCTGCCAATATT 60.553 50.000 0.00 0.00 0.00 1.28
129 130 2.485426 CGTAGATGCCCTGCCAATATTG 59.515 50.000 8.58 8.58 0.00 1.90
145 146 6.961576 CCAATATTGGCTTGCCAATTATTTG 58.038 36.000 35.14 30.62 42.21 2.32
157 158 4.644498 CCAATTATTTGGCATGGGATTCC 58.356 43.478 3.53 0.00 45.71 3.01
158 159 4.102838 CCAATTATTTGGCATGGGATTCCA 59.897 41.667 4.80 0.00 45.71 3.53
159 160 5.973900 CCAATTATTTGGCATGGGATTCCAC 60.974 44.000 0.00 0.00 45.07 4.02
160 161 8.866124 CCAATTATTTGGCATGGGATTCCACC 62.866 46.154 0.00 0.00 45.07 4.61
166 167 3.727258 TGGGATTCCACCGCCCAG 61.727 66.667 4.80 0.00 46.57 4.45
168 169 4.506255 GGATTCCACCGCCCAGGG 62.506 72.222 0.00 0.00 46.96 4.45
169 170 3.728373 GATTCCACCGCCCAGGGT 61.728 66.667 7.55 0.00 46.96 4.34
170 171 3.264845 ATTCCACCGCCCAGGGTT 61.265 61.111 7.55 0.00 46.96 4.11
171 172 3.583882 ATTCCACCGCCCAGGGTTG 62.584 63.158 7.55 1.98 46.96 3.77
178 179 2.846754 GCCCAGGGTTGGCCAAAA 60.847 61.111 22.47 0.00 43.58 2.44
179 180 2.223443 GCCCAGGGTTGGCCAAAAT 61.223 57.895 22.47 6.09 43.58 1.82
180 181 1.778017 GCCCAGGGTTGGCCAAAATT 61.778 55.000 22.47 5.30 43.58 1.82
181 182 0.770499 CCCAGGGTTGGCCAAAATTT 59.230 50.000 22.47 3.26 43.58 1.82
182 183 1.144708 CCCAGGGTTGGCCAAAATTTT 59.855 47.619 22.47 1.26 43.58 1.82
183 184 2.228925 CCAGGGTTGGCCAAAATTTTG 58.771 47.619 22.47 21.65 37.73 2.44
197 198 6.847956 CAAAATTTTGGCAAGAATCTGTGA 57.152 33.333 21.00 0.00 34.59 3.58
198 199 7.249186 CAAAATTTTGGCAAGAATCTGTGAA 57.751 32.000 21.00 0.00 34.59 3.18
199 200 7.349711 CAAAATTTTGGCAAGAATCTGTGAAG 58.650 34.615 21.00 0.00 34.59 3.02
200 201 4.589216 TTTTGGCAAGAATCTGTGAAGG 57.411 40.909 0.00 0.00 0.00 3.46
201 202 3.507162 TTGGCAAGAATCTGTGAAGGA 57.493 42.857 0.00 0.00 0.00 3.36
202 203 3.507162 TGGCAAGAATCTGTGAAGGAA 57.493 42.857 0.00 0.00 0.00 3.36
203 204 3.415212 TGGCAAGAATCTGTGAAGGAAG 58.585 45.455 0.00 0.00 0.00 3.46
204 205 2.751806 GGCAAGAATCTGTGAAGGAAGG 59.248 50.000 0.00 0.00 0.00 3.46
205 206 3.560025 GGCAAGAATCTGTGAAGGAAGGA 60.560 47.826 0.00 0.00 0.00 3.36
206 207 4.074970 GCAAGAATCTGTGAAGGAAGGAA 58.925 43.478 0.00 0.00 0.00 3.36
207 208 4.083057 GCAAGAATCTGTGAAGGAAGGAAC 60.083 45.833 0.00 0.00 0.00 3.62
208 209 4.982241 AGAATCTGTGAAGGAAGGAACA 57.018 40.909 0.00 0.00 0.00 3.18
209 210 5.310409 AGAATCTGTGAAGGAAGGAACAA 57.690 39.130 0.00 0.00 0.00 2.83
210 211 5.312079 AGAATCTGTGAAGGAAGGAACAAG 58.688 41.667 0.00 0.00 0.00 3.16
211 212 3.492102 TCTGTGAAGGAAGGAACAAGG 57.508 47.619 0.00 0.00 0.00 3.61
212 213 2.106511 TCTGTGAAGGAAGGAACAAGGG 59.893 50.000 0.00 0.00 0.00 3.95
213 214 2.106511 CTGTGAAGGAAGGAACAAGGGA 59.893 50.000 0.00 0.00 0.00 4.20
214 215 2.158667 TGTGAAGGAAGGAACAAGGGAC 60.159 50.000 0.00 0.00 0.00 4.46
216 217 2.372172 TGAAGGAAGGAACAAGGGACTC 59.628 50.000 0.00 0.00 38.49 3.36
217 218 0.977395 AGGAAGGAACAAGGGACTCG 59.023 55.000 0.00 0.00 38.49 4.18
218 219 0.685660 GGAAGGAACAAGGGACTCGT 59.314 55.000 0.00 0.00 38.49 4.18
219 220 1.071857 GGAAGGAACAAGGGACTCGTT 59.928 52.381 0.00 0.00 38.49 3.85
220 221 2.143925 GAAGGAACAAGGGACTCGTTG 58.856 52.381 0.00 0.00 38.49 4.10
221 222 0.396811 AGGAACAAGGGACTCGTTGG 59.603 55.000 0.00 0.00 38.49 3.77
222 223 1.235281 GGAACAAGGGACTCGTTGGC 61.235 60.000 0.00 0.00 38.49 4.52
223 224 0.534203 GAACAAGGGACTCGTTGGCA 60.534 55.000 0.00 0.00 38.49 4.92
224 225 0.535102 AACAAGGGACTCGTTGGCAG 60.535 55.000 0.00 0.00 38.49 4.85
225 226 2.032681 AAGGGACTCGTTGGCAGC 59.967 61.111 0.00 0.00 38.49 5.25
226 227 3.553095 AAGGGACTCGTTGGCAGCC 62.553 63.158 3.66 3.66 38.49 4.85
227 228 4.329545 GGGACTCGTTGGCAGCCA 62.330 66.667 11.22 11.22 0.00 4.75
228 229 2.281484 GGACTCGTTGGCAGCCAA 60.281 61.111 23.88 23.88 41.69 4.52
229 230 1.896660 GGACTCGTTGGCAGCCAAA 60.897 57.895 29.04 13.46 45.73 3.28
230 231 1.452145 GGACTCGTTGGCAGCCAAAA 61.452 55.000 29.04 18.14 45.73 2.44
231 232 0.383949 GACTCGTTGGCAGCCAAAAA 59.616 50.000 29.04 17.78 45.73 1.94
232 233 1.000274 GACTCGTTGGCAGCCAAAAAT 60.000 47.619 29.04 14.31 45.73 1.82
233 234 1.412343 ACTCGTTGGCAGCCAAAAATT 59.588 42.857 29.04 10.90 45.73 1.82
234 235 2.158971 ACTCGTTGGCAGCCAAAAATTT 60.159 40.909 29.04 9.43 45.73 1.82
235 236 2.208431 TCGTTGGCAGCCAAAAATTTG 58.792 42.857 29.04 13.72 45.73 2.32
253 254 3.450028 GGCAACAAAGCAAACACCA 57.550 47.368 0.00 0.00 35.83 4.17
254 255 1.952193 GGCAACAAAGCAAACACCAT 58.048 45.000 0.00 0.00 35.83 3.55
255 256 3.104843 GGCAACAAAGCAAACACCATA 57.895 42.857 0.00 0.00 35.83 2.74
256 257 2.799978 GGCAACAAAGCAAACACCATAC 59.200 45.455 0.00 0.00 35.83 2.39
257 258 3.452474 GCAACAAAGCAAACACCATACA 58.548 40.909 0.00 0.00 0.00 2.29
258 259 3.868077 GCAACAAAGCAAACACCATACAA 59.132 39.130 0.00 0.00 0.00 2.41
259 260 4.331168 GCAACAAAGCAAACACCATACAAA 59.669 37.500 0.00 0.00 0.00 2.83
260 261 5.502220 GCAACAAAGCAAACACCATACAAAG 60.502 40.000 0.00 0.00 0.00 2.77
261 262 4.692228 ACAAAGCAAACACCATACAAAGG 58.308 39.130 0.00 0.00 0.00 3.11
262 263 4.404073 ACAAAGCAAACACCATACAAAGGA 59.596 37.500 0.00 0.00 0.00 3.36
263 264 5.070313 ACAAAGCAAACACCATACAAAGGAT 59.930 36.000 0.00 0.00 0.00 3.24
264 265 5.806654 AAGCAAACACCATACAAAGGATT 57.193 34.783 0.00 0.00 0.00 3.01
265 266 5.806654 AGCAAACACCATACAAAGGATTT 57.193 34.783 0.00 0.00 40.26 2.17
296 297 6.207691 CCAATATTTTGGTAGGGTGAGTTG 57.792 41.667 6.76 0.00 46.27 3.16
297 298 5.127031 CCAATATTTTGGTAGGGTGAGTTGG 59.873 44.000 6.76 0.00 46.27 3.77
298 299 2.668144 TTTTGGTAGGGTGAGTTGGG 57.332 50.000 0.00 0.00 0.00 4.12
299 300 0.774908 TTTGGTAGGGTGAGTTGGGG 59.225 55.000 0.00 0.00 0.00 4.96
300 301 1.137594 TTGGTAGGGTGAGTTGGGGG 61.138 60.000 0.00 0.00 0.00 5.40
301 302 2.675371 GTAGGGTGAGTTGGGGGC 59.325 66.667 0.00 0.00 0.00 5.80
302 303 2.208640 TAGGGTGAGTTGGGGGCA 59.791 61.111 0.00 0.00 0.00 5.36
303 304 1.230149 TAGGGTGAGTTGGGGGCAT 60.230 57.895 0.00 0.00 0.00 4.40
304 305 0.045008 TAGGGTGAGTTGGGGGCATA 59.955 55.000 0.00 0.00 0.00 3.14
305 306 0.849094 AGGGTGAGTTGGGGGCATAA 60.849 55.000 0.00 0.00 0.00 1.90
306 307 0.040499 GGGTGAGTTGGGGGCATAAA 59.960 55.000 0.00 0.00 0.00 1.40
307 308 1.182667 GGTGAGTTGGGGGCATAAAC 58.817 55.000 0.00 0.00 0.00 2.01
308 309 1.182667 GTGAGTTGGGGGCATAAACC 58.817 55.000 0.00 0.00 0.00 3.27
309 310 0.780637 TGAGTTGGGGGCATAAACCA 59.219 50.000 0.00 0.00 0.00 3.67
310 311 1.148027 TGAGTTGGGGGCATAAACCAA 59.852 47.619 0.00 0.00 41.66 3.67
311 312 2.252714 GAGTTGGGGGCATAAACCAAA 58.747 47.619 0.00 0.00 45.04 3.28
312 313 1.974957 AGTTGGGGGCATAAACCAAAC 59.025 47.619 0.00 0.00 45.04 2.93
313 314 1.694696 GTTGGGGGCATAAACCAAACA 59.305 47.619 0.00 0.00 45.04 2.83
314 315 1.638529 TGGGGGCATAAACCAAACAG 58.361 50.000 0.00 0.00 0.00 3.16
315 316 0.249120 GGGGGCATAAACCAAACAGC 59.751 55.000 0.00 0.00 0.00 4.40
316 317 0.249120 GGGGCATAAACCAAACAGCC 59.751 55.000 0.00 0.00 41.29 4.85
317 318 3.832704 GGCATAAACCAAACAGCCC 57.167 52.632 0.00 0.00 36.17 5.19
318 319 0.249120 GGCATAAACCAAACAGCCCC 59.751 55.000 0.00 0.00 36.17 5.80
345 346 3.464111 TTATGGCTACCGTTTAGGAGC 57.536 47.619 0.00 0.00 45.00 4.70
445 446 9.965824 AATAATTGCTATTATTTTCCGGAGTTG 57.034 29.630 17.08 0.00 41.82 3.16
512 513 3.504273 GCACGCCACACACACACA 61.504 61.111 0.00 0.00 0.00 3.72
516 517 2.394563 CGCCACACACACACACACA 61.395 57.895 0.00 0.00 0.00 3.72
517 518 1.136565 GCCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
518 519 1.800032 CCACACACACACACACACC 59.200 57.895 0.00 0.00 0.00 4.16
519 520 1.653094 CCACACACACACACACACCC 61.653 60.000 0.00 0.00 0.00 4.61
520 521 0.676466 CACACACACACACACACCCT 60.676 55.000 0.00 0.00 0.00 4.34
521 522 0.392461 ACACACACACACACACCCTC 60.392 55.000 0.00 0.00 0.00 4.30
571 572 3.114616 CTTGCGCGGAGACTGGTG 61.115 66.667 8.83 0.00 0.00 4.17
572 573 3.865929 CTTGCGCGGAGACTGGTGT 62.866 63.158 8.83 0.00 0.00 4.16
573 574 3.858868 TTGCGCGGAGACTGGTGTC 62.859 63.158 8.83 0.00 43.22 3.67
575 576 4.436998 CGCGGAGACTGGTGTCCC 62.437 72.222 10.65 4.05 43.91 4.46
577 578 3.760035 CGGAGACTGGTGTCCCGG 61.760 72.222 10.65 0.00 45.04 5.73
578 579 2.283676 GGAGACTGGTGTCCCGGA 60.284 66.667 0.73 0.00 43.91 5.14
579 580 2.647158 GGAGACTGGTGTCCCGGAC 61.647 68.421 10.96 10.96 43.91 4.79
580 581 2.989824 AGACTGGTGTCCCGGACG 60.990 66.667 13.02 1.01 43.91 4.79
581 582 4.736896 GACTGGTGTCCCGGACGC 62.737 72.222 21.04 21.04 39.78 5.19
626 627 0.605589 AGGCTCGAGTCAAAGTCCAG 59.394 55.000 20.97 0.00 0.00 3.86
641 642 0.902984 TCCAGCTCCGACCTTGCTAA 60.903 55.000 0.00 0.00 35.05 3.09
670 671 2.741092 GAGCCCGACACCTGTCAA 59.259 61.111 6.27 0.00 44.99 3.18
671 672 1.070786 GAGCCCGACACCTGTCAAA 59.929 57.895 6.27 0.00 44.99 2.69
672 673 1.227853 AGCCCGACACCTGTCAAAC 60.228 57.895 6.27 0.00 44.99 2.93
673 674 2.258726 GCCCGACACCTGTCAAACC 61.259 63.158 6.27 0.00 44.99 3.27
755 765 2.231380 ACCAGTCCGGCATTCCCTT 61.231 57.895 0.00 0.00 39.03 3.95
770 780 1.727525 TCCCTTCCCATCCCCAAATTT 59.272 47.619 0.00 0.00 0.00 1.82
910 921 2.046141 CGTCGTGTCGTAACGGTTC 58.954 57.895 11.57 4.11 43.73 3.62
941 952 4.319190 GGGTTTTAATTTTTCGCCACTTGC 60.319 41.667 0.00 0.00 0.00 4.01
1063 1081 1.963338 GAGCGCTGCTTTCCACAGT 60.963 57.895 18.48 0.00 39.88 3.55
1075 1093 2.664851 CACAGTTCTGCGGCGGAA 60.665 61.111 19.83 19.83 0.00 4.30
1077 1095 2.048222 CAGTTCTGCGGCGGAAGA 60.048 61.111 23.78 4.35 28.60 2.87
1078 1096 2.097038 CAGTTCTGCGGCGGAAGAG 61.097 63.158 23.78 15.19 28.60 2.85
1274 1310 0.034896 GGGGATGATGTCGCGGTATT 59.965 55.000 6.13 0.00 40.50 1.89
1365 1401 1.001633 GGCGGTGAACTACAGAGGAAA 59.998 52.381 0.00 0.00 0.00 3.13
1373 1409 4.202430 TGAACTACAGAGGAAAAGGGGTTC 60.202 45.833 0.00 0.00 33.49 3.62
1493 1529 4.099585 CGACGACGACGGTTTGCG 62.100 66.667 12.58 3.65 44.46 4.85
1513 1549 1.179174 GGTTGGAACTGCACCTTCCC 61.179 60.000 13.62 2.42 37.03 3.97
1627 1663 2.180276 AGGTGACGGCTTCTGATAGTT 58.820 47.619 0.00 0.00 0.00 2.24
1857 1893 0.463620 GCAGAGGAGGTGATGAGGTC 59.536 60.000 0.00 0.00 0.00 3.85
1872 1908 1.880027 GAGGTCGGTTTGCAGTTTGAT 59.120 47.619 0.00 0.00 0.00 2.57
1903 1939 2.060980 GGTGGTGGTTTGGGTGCAA 61.061 57.895 0.00 0.00 0.00 4.08
1985 2021 2.523015 CGAGAATGCTTTGGATGCAAC 58.477 47.619 0.00 0.00 44.01 4.17
1987 2023 3.248266 GAGAATGCTTTGGATGCAACAC 58.752 45.455 0.00 0.00 44.01 3.32
2050 2086 2.485124 CCTGATCATGTCCTCCAAGAGC 60.485 54.545 0.00 0.00 0.00 4.09
2077 2113 6.051074 CCAGTTACTCACAGCAATATCATGA 58.949 40.000 0.00 0.00 0.00 3.07
2078 2114 6.709397 CCAGTTACTCACAGCAATATCATGAT 59.291 38.462 13.81 13.81 0.00 2.45
2130 2166 2.259266 TCTCAGTGAACATGCTGCAA 57.741 45.000 6.36 0.00 33.09 4.08
2214 2250 2.116125 AGTTCACCCAAGGCTGCC 59.884 61.111 11.65 11.65 0.00 4.85
2225 2261 1.963515 CAAGGCTGCCAGTAAACCTTT 59.036 47.619 22.65 0.00 38.67 3.11
2256 2307 3.719871 TCTTGGGGATACTACAGAAGCA 58.280 45.455 0.00 0.00 0.00 3.91
2260 2311 2.034812 GGGGATACTACAGAAGCAGTCG 59.965 54.545 0.00 0.00 0.00 4.18
2330 2381 0.030908 GAGATTCGTACGGAGCCTGG 59.969 60.000 16.52 0.00 0.00 4.45
2352 2403 0.905357 ATGTCCTCCAAGAGAACCCG 59.095 55.000 0.00 0.00 0.00 5.28
2373 2424 4.382254 CCGGTTACTCACAACAATAGCCTA 60.382 45.833 0.00 0.00 0.00 3.93
2422 2473 0.665835 TGTTGTGCCGTCAATGGTTC 59.334 50.000 0.00 0.00 0.00 3.62
2453 2504 4.762251 ACCTTCTGTGAGGCATTTTTCTAC 59.238 41.667 0.00 0.00 40.65 2.59
2560 2611 1.247567 CGAAGGCAATTCACCCAAGT 58.752 50.000 2.33 0.00 37.83 3.16
2572 2623 3.826524 TCACCCAAGTCTGCATGTAAAA 58.173 40.909 0.00 0.00 0.00 1.52
2589 2640 4.225267 TGTAAAACTCCTCCTGAAGATCCC 59.775 45.833 0.00 0.00 0.00 3.85
2606 2657 7.127801 TGAAGATCCCCTGAAAGAATATCTTGA 59.872 37.037 0.00 0.00 36.71 3.02
2701 2752 4.454847 ACGGTATCATGAGACGTATGGTAG 59.545 45.833 14.00 1.55 35.85 3.18
2750 2801 0.247460 GAAGGCAATTCACCCAAGGC 59.753 55.000 0.00 0.00 37.88 4.35
2824 2875 4.816925 AGAAAGTGTCTGAAAGTTGTAGCC 59.183 41.667 0.00 0.00 34.29 3.93
2885 2936 2.901209 CGACGGTATCATGAGACGTAC 58.099 52.381 18.16 8.46 37.96 3.67
2946 2997 3.342719 TGAAGCAAATCATAAGTCCGCA 58.657 40.909 0.00 0.00 0.00 5.69
2952 3003 4.188462 CAAATCATAAGTCCGCACTGGTA 58.812 43.478 0.00 0.00 39.52 3.25
2999 3050 1.344763 CAAGGAGAAGGAGTCCGTTGT 59.655 52.381 2.76 0.00 39.30 3.32
3026 3077 2.101700 GCGAATCCTTTGCTCCCAG 58.898 57.895 0.00 0.00 37.09 4.45
3052 3103 8.731605 GGAAGAAGTTAAAGATAAAAGGTCCAG 58.268 37.037 0.00 0.00 0.00 3.86
3070 3121 6.825721 AGGTCCAGCTCAAAGTAAATATCTTG 59.174 38.462 0.00 0.00 0.00 3.02
3136 3220 8.922058 AGATGATGAAGTTTTGAATGCAATAC 57.078 30.769 0.00 0.00 36.56 1.89
3160 3244 5.295431 TGTTGAAGCAAATCATAAGTCCG 57.705 39.130 0.00 0.00 0.00 4.79
3174 3258 0.460284 AGTCCGCGCTGGTTAATCTG 60.460 55.000 16.00 0.00 39.52 2.90
3200 3284 1.922447 ACCATGTTCTATGGGCAAGGA 59.078 47.619 10.40 0.00 43.32 3.36
3265 3349 9.078990 CCAGGAAGAAGTTAAAGATAAAAGGTT 57.921 33.333 0.00 0.00 0.00 3.50
3547 3631 0.452184 TTCGCTGAAGAGCCGTAGAG 59.548 55.000 0.00 0.00 42.91 2.43
3734 3818 7.231317 CACCACAAAGGATATTAATGGTATGCT 59.769 37.037 0.00 0.00 41.22 3.79
4033 4117 1.277557 AGTGCTGGCAAGAAGGTCTAG 59.722 52.381 0.00 0.00 0.00 2.43
4673 4757 3.496692 CCATCAGTTGTTCCAGGTCTGAA 60.497 47.826 0.00 0.00 38.38 3.02
4866 4950 3.954200 TGCTGCTGAGAATATTTCACCA 58.046 40.909 0.00 0.00 0.00 4.17
4869 4953 4.397417 GCTGCTGAGAATATTTCACCACTT 59.603 41.667 0.00 0.00 0.00 3.16
5074 5158 3.135895 TGGAAGGCTGTTAATACTAGGGC 59.864 47.826 0.00 0.00 0.00 5.19
5102 5186 7.616528 TTCTTTCCAAGAAAATCCTTTGGAT 57.383 32.000 6.06 0.00 44.10 3.41
5103 5187 6.996509 TCTTTCCAAGAAAATCCTTTGGATG 58.003 36.000 6.06 3.68 37.24 3.51
5189 5275 4.022416 TGTGAAGTGTTCATATGGGCAAAC 60.022 41.667 2.13 0.53 42.47 2.93
5230 5316 6.037786 TCTGTTATTCTGTTGTCCACCTAG 57.962 41.667 0.00 0.00 0.00 3.02
5309 5425 6.040878 GCAGTACAAGTACCGTGATTTCTAT 58.959 40.000 6.74 0.00 36.75 1.98
5379 5495 5.804639 TGTGCCACAGTCATATTTTACTCT 58.195 37.500 0.00 0.00 0.00 3.24
5381 5497 6.714810 TGTGCCACAGTCATATTTTACTCTTT 59.285 34.615 0.00 0.00 0.00 2.52
5383 5499 6.939730 TGCCACAGTCATATTTTACTCTTTCA 59.060 34.615 0.00 0.00 0.00 2.69
5576 5707 2.509052 TACACAGACATGCTATCGGC 57.491 50.000 0.00 0.00 42.22 5.54
5582 5713 3.056536 ACAGACATGCTATCGGCGATATT 60.057 43.478 27.86 14.24 45.43 1.28
5587 5718 4.082190 ACATGCTATCGGCGATATTGTACT 60.082 41.667 27.86 5.31 45.43 2.73
5588 5719 3.833442 TGCTATCGGCGATATTGTACTG 58.167 45.455 27.86 16.09 45.43 2.74
5597 5728 7.255569 TCGGCGATATTGTACTGAATATTAGG 58.744 38.462 4.99 0.00 30.18 2.69
5607 5738 9.860650 TTGTACTGAATATTAGGCCAACATATT 57.139 29.630 5.01 9.57 0.00 1.28
5609 5740 7.219484 ACTGAATATTAGGCCAACATATTGC 57.781 36.000 15.30 9.59 34.17 3.56
5612 5743 6.209192 TGAATATTAGGCCAACATATTGCCTG 59.791 38.462 15.30 0.00 40.43 4.85
5634 5765 2.303175 GACTAGAGACGCTGGAGGAAT 58.697 52.381 0.00 0.00 0.00 3.01
5637 5768 2.445682 AGAGACGCTGGAGGAATACT 57.554 50.000 0.00 0.00 0.00 2.12
5639 5770 3.100671 AGAGACGCTGGAGGAATACTTT 58.899 45.455 0.00 0.00 0.00 2.66
5640 5771 3.118956 AGAGACGCTGGAGGAATACTTTG 60.119 47.826 0.00 0.00 0.00 2.77
5643 5774 2.009774 CGCTGGAGGAATACTTTGTGG 58.990 52.381 0.00 0.00 0.00 4.17
5661 5792 7.669722 ACTTTGTGGAAATTCTTATTAGCCTCA 59.330 33.333 0.00 0.00 0.00 3.86
5662 5793 8.593945 TTTGTGGAAATTCTTATTAGCCTCAT 57.406 30.769 0.00 0.00 29.60 2.90
5666 5797 6.606796 TGGAAATTCTTATTAGCCTCATGCAA 59.393 34.615 0.00 0.00 44.83 4.08
5668 5799 8.796475 GGAAATTCTTATTAGCCTCATGCAATA 58.204 33.333 0.00 0.00 44.83 1.90
5710 5841 4.500477 GCTGTTTACTTGCAACTTGAACTG 59.500 41.667 0.00 4.53 0.00 3.16
5733 5864 6.173191 GGAATTCAAGTTCCGAAATCGTTA 57.827 37.500 7.93 0.00 38.41 3.18
5740 5871 5.779806 AGTTCCGAAATCGTTATGTCTTG 57.220 39.130 1.79 0.00 37.74 3.02
5809 5940 6.854892 GCATGAATAACTGATGTTGCATCTAC 59.145 38.462 0.00 0.00 37.59 2.59
5823 5954 2.034812 GCATCTACCCCTAGTTCGACAG 59.965 54.545 0.00 0.00 0.00 3.51
5839 5970 2.480845 GACAGCCACTTTACTTGACGT 58.519 47.619 0.00 0.00 0.00 4.34
5846 5977 3.184581 CCACTTTACTTGACGTGAAGAGC 59.815 47.826 21.91 0.00 40.59 4.09
5871 6002 8.673711 GCTGAAAAAGAAAGGGTTGTAAAAATT 58.326 29.630 0.00 0.00 0.00 1.82
5875 6006 6.816616 AAGAAAGGGTTGTAAAAATTGGGA 57.183 33.333 0.00 0.00 0.00 4.37
5891 6022 7.603963 AAATTGGGATTTTTACGGTAATTGC 57.396 32.000 0.73 0.00 31.48 3.56
5892 6023 4.722361 TGGGATTTTTACGGTAATTGCC 57.278 40.909 1.83 1.83 0.00 4.52
5893 6024 4.345854 TGGGATTTTTACGGTAATTGCCT 58.654 39.130 11.07 0.82 0.00 4.75
5894 6025 4.773149 TGGGATTTTTACGGTAATTGCCTT 59.227 37.500 11.07 3.78 0.00 4.35
5895 6026 5.246429 TGGGATTTTTACGGTAATTGCCTTT 59.754 36.000 11.07 0.10 0.00 3.11
5896 6027 5.579119 GGGATTTTTACGGTAATTGCCTTTG 59.421 40.000 11.07 0.00 0.00 2.77
5897 6028 5.579119 GGATTTTTACGGTAATTGCCTTTGG 59.421 40.000 11.07 0.00 0.00 3.28
5907 6038 4.645809 GCCTTTGGCTCCTAGGTG 57.354 61.111 9.08 7.68 46.69 4.00
5908 6039 1.750780 GCCTTTGGCTCCTAGGTGC 60.751 63.158 24.68 24.68 46.69 5.01
5909 6040 1.685224 CCTTTGGCTCCTAGGTGCA 59.315 57.895 31.19 17.76 36.47 4.57
5910 6041 0.257039 CCTTTGGCTCCTAGGTGCAT 59.743 55.000 31.19 0.00 36.47 3.96
5911 6042 1.490490 CCTTTGGCTCCTAGGTGCATA 59.510 52.381 31.19 19.50 36.47 3.14
5912 6043 2.107204 CCTTTGGCTCCTAGGTGCATAT 59.893 50.000 31.19 0.00 36.47 1.78
5913 6044 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
5914 6045 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
5925 6056 3.851620 GCATATGCACCCATTGTCG 57.148 52.632 22.84 0.00 41.59 4.35
5926 6057 1.308047 GCATATGCACCCATTGTCGA 58.692 50.000 22.84 0.00 41.59 4.20
5927 6058 1.675483 GCATATGCACCCATTGTCGAA 59.325 47.619 22.84 0.00 41.59 3.71
5928 6059 2.098934 GCATATGCACCCATTGTCGAAA 59.901 45.455 22.84 0.00 41.59 3.46
5929 6060 3.243501 GCATATGCACCCATTGTCGAAAT 60.244 43.478 22.84 0.00 41.59 2.17
5930 6061 4.023279 GCATATGCACCCATTGTCGAAATA 60.023 41.667 22.84 0.00 41.59 1.40
5931 6062 5.451908 CATATGCACCCATTGTCGAAATAC 58.548 41.667 0.00 0.00 32.85 1.89
5932 6063 2.784347 TGCACCCATTGTCGAAATACA 58.216 42.857 0.00 0.00 0.00 2.29
5933 6064 2.486203 TGCACCCATTGTCGAAATACAC 59.514 45.455 0.00 0.00 0.00 2.90
5934 6065 2.486203 GCACCCATTGTCGAAATACACA 59.514 45.455 0.00 0.00 0.00 3.72
5935 6066 3.128589 GCACCCATTGTCGAAATACACAT 59.871 43.478 0.00 0.00 0.00 3.21
5936 6067 4.380444 GCACCCATTGTCGAAATACACATT 60.380 41.667 0.00 0.00 0.00 2.71
5937 6068 5.708948 CACCCATTGTCGAAATACACATTT 58.291 37.500 0.00 0.00 37.06 2.32
5938 6069 5.799936 CACCCATTGTCGAAATACACATTTC 59.200 40.000 0.00 0.92 44.44 2.17
5971 6102 2.812358 ATTCAGAACAAAAACCCCGC 57.188 45.000 0.00 0.00 0.00 6.13
5972 6103 0.382515 TTCAGAACAAAAACCCCGCG 59.617 50.000 0.00 0.00 0.00 6.46
5973 6104 0.748729 TCAGAACAAAAACCCCGCGT 60.749 50.000 4.92 0.00 0.00 6.01
5974 6105 0.593773 CAGAACAAAAACCCCGCGTG 60.594 55.000 4.92 0.00 0.00 5.34
5975 6106 1.033202 AGAACAAAAACCCCGCGTGT 61.033 50.000 4.92 0.00 0.00 4.49
5976 6107 0.662085 GAACAAAAACCCCGCGTGTA 59.338 50.000 4.92 0.00 0.00 2.90
5977 6108 1.267533 GAACAAAAACCCCGCGTGTAT 59.732 47.619 4.92 0.00 0.00 2.29
5978 6109 2.181954 ACAAAAACCCCGCGTGTATA 57.818 45.000 4.92 0.00 0.00 1.47
5979 6110 2.713877 ACAAAAACCCCGCGTGTATAT 58.286 42.857 4.92 0.00 0.00 0.86
5980 6111 2.679336 ACAAAAACCCCGCGTGTATATC 59.321 45.455 4.92 0.00 0.00 1.63
5981 6112 1.957668 AAAACCCCGCGTGTATATCC 58.042 50.000 4.92 0.00 0.00 2.59
5982 6113 0.249573 AAACCCCGCGTGTATATCCG 60.250 55.000 4.92 0.00 0.00 4.18
5983 6114 2.091102 AACCCCGCGTGTATATCCGG 62.091 60.000 4.92 0.00 40.39 5.14
5984 6115 2.270257 CCCCGCGTGTATATCCGGA 61.270 63.158 6.61 6.61 43.20 5.14
5985 6116 1.080974 CCCGCGTGTATATCCGGAC 60.081 63.158 6.12 0.00 43.20 4.79
5986 6117 1.655885 CCGCGTGTATATCCGGACA 59.344 57.895 6.12 0.00 43.20 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.351405 ACTTCCCAAGTCTAAAGAGGGTAT 58.649 41.667 0.00 0.00 37.02 2.73
1 2 4.759953 ACTTCCCAAGTCTAAAGAGGGTA 58.240 43.478 0.00 0.00 37.02 3.69
2 3 3.599348 ACTTCCCAAGTCTAAAGAGGGT 58.401 45.455 0.00 0.00 37.02 4.34
13 14 4.963628 GGGATAAGACTAGACTTCCCAAGT 59.036 45.833 20.65 0.00 46.38 3.16
14 15 4.962995 TGGGATAAGACTAGACTTCCCAAG 59.037 45.833 24.04 0.00 39.41 3.61
15 16 4.955335 TGGGATAAGACTAGACTTCCCAA 58.045 43.478 24.04 13.09 39.41 4.12
16 17 4.547671 CTGGGATAAGACTAGACTTCCCA 58.452 47.826 24.38 24.38 39.78 4.37
17 18 3.322541 GCTGGGATAAGACTAGACTTCCC 59.677 52.174 19.43 19.43 35.66 3.97
18 19 4.219919 AGCTGGGATAAGACTAGACTTCC 58.780 47.826 10.78 7.47 0.00 3.46
19 20 5.862678 AAGCTGGGATAAGACTAGACTTC 57.137 43.478 10.78 0.00 0.00 3.01
20 21 6.239458 GCATAAGCTGGGATAAGACTAGACTT 60.239 42.308 12.07 12.07 37.91 3.01
21 22 5.245075 GCATAAGCTGGGATAAGACTAGACT 59.755 44.000 0.00 0.00 37.91 3.24
22 23 5.474825 GCATAAGCTGGGATAAGACTAGAC 58.525 45.833 0.00 0.00 37.91 2.59
23 24 4.218635 CGCATAAGCTGGGATAAGACTAGA 59.781 45.833 0.00 0.00 40.13 2.43
24 25 4.489810 CGCATAAGCTGGGATAAGACTAG 58.510 47.826 0.00 0.00 40.13 2.57
25 26 3.258372 CCGCATAAGCTGGGATAAGACTA 59.742 47.826 0.00 0.00 40.13 2.59
26 27 2.037772 CCGCATAAGCTGGGATAAGACT 59.962 50.000 0.00 0.00 40.13 3.24
27 28 2.417719 CCGCATAAGCTGGGATAAGAC 58.582 52.381 0.00 0.00 40.13 3.01
28 29 2.839486 CCGCATAAGCTGGGATAAGA 57.161 50.000 0.00 0.00 40.13 2.10
36 37 1.382522 ATCAACACCCGCATAAGCTG 58.617 50.000 0.00 0.00 39.10 4.24
37 38 2.128771 AATCAACACCCGCATAAGCT 57.871 45.000 0.00 0.00 39.10 3.74
38 39 2.163412 TCAAATCAACACCCGCATAAGC 59.837 45.455 0.00 0.00 37.42 3.09
39 40 4.637483 ATCAAATCAACACCCGCATAAG 57.363 40.909 0.00 0.00 0.00 1.73
40 41 5.189928 AGTATCAAATCAACACCCGCATAA 58.810 37.500 0.00 0.00 0.00 1.90
41 42 4.776349 AGTATCAAATCAACACCCGCATA 58.224 39.130 0.00 0.00 0.00 3.14
42 43 3.620488 AGTATCAAATCAACACCCGCAT 58.380 40.909 0.00 0.00 0.00 4.73
43 44 3.066291 AGTATCAAATCAACACCCGCA 57.934 42.857 0.00 0.00 0.00 5.69
44 45 4.201881 GGTAAGTATCAAATCAACACCCGC 60.202 45.833 0.00 0.00 0.00 6.13
45 46 4.033587 CGGTAAGTATCAAATCAACACCCG 59.966 45.833 0.00 0.00 0.00 5.28
46 47 5.180271 TCGGTAAGTATCAAATCAACACCC 58.820 41.667 0.00 0.00 0.00 4.61
47 48 5.873164 ACTCGGTAAGTATCAAATCAACACC 59.127 40.000 0.00 0.00 36.07 4.16
48 49 6.963049 ACTCGGTAAGTATCAAATCAACAC 57.037 37.500 0.00 0.00 36.07 3.32
49 50 6.309494 CGAACTCGGTAAGTATCAAATCAACA 59.691 38.462 0.00 0.00 37.17 3.33
50 51 6.693342 CGAACTCGGTAAGTATCAAATCAAC 58.307 40.000 0.00 0.00 37.17 3.18
51 52 5.290158 GCGAACTCGGTAAGTATCAAATCAA 59.710 40.000 0.69 0.00 37.17 2.57
52 53 4.802039 GCGAACTCGGTAAGTATCAAATCA 59.198 41.667 0.69 0.00 37.17 2.57
53 54 4.802039 TGCGAACTCGGTAAGTATCAAATC 59.198 41.667 0.69 0.00 37.17 2.17
54 55 4.565564 GTGCGAACTCGGTAAGTATCAAAT 59.434 41.667 0.69 0.00 37.17 2.32
55 56 3.922240 GTGCGAACTCGGTAAGTATCAAA 59.078 43.478 0.69 0.00 37.17 2.69
56 57 3.504863 GTGCGAACTCGGTAAGTATCAA 58.495 45.455 0.69 0.00 37.17 2.57
57 58 2.159338 GGTGCGAACTCGGTAAGTATCA 60.159 50.000 0.69 0.00 37.17 2.15
58 59 2.457970 GGTGCGAACTCGGTAAGTATC 58.542 52.381 0.69 0.00 37.17 2.24
59 60 1.202222 CGGTGCGAACTCGGTAAGTAT 60.202 52.381 0.69 0.00 37.17 2.12
60 61 0.168788 CGGTGCGAACTCGGTAAGTA 59.831 55.000 0.69 0.00 37.17 2.24
61 62 1.080974 CGGTGCGAACTCGGTAAGT 60.081 57.895 0.69 0.00 41.10 2.24
62 63 1.804326 CCGGTGCGAACTCGGTAAG 60.804 63.158 13.57 0.00 39.04 2.34
63 64 2.259204 CCGGTGCGAACTCGGTAA 59.741 61.111 13.57 0.00 39.04 2.85
64 65 3.751246 CCCGGTGCGAACTCGGTA 61.751 66.667 18.50 0.00 41.98 4.02
66 67 4.143333 ATCCCGGTGCGAACTCGG 62.143 66.667 14.55 14.55 43.05 4.63
67 68 2.274232 TACATCCCGGTGCGAACTCG 62.274 60.000 0.00 0.00 43.27 4.18
68 69 0.108520 TTACATCCCGGTGCGAACTC 60.109 55.000 0.00 0.00 0.00 3.01
69 70 0.108329 CTTACATCCCGGTGCGAACT 60.108 55.000 0.00 0.00 0.00 3.01
70 71 1.087771 CCTTACATCCCGGTGCGAAC 61.088 60.000 0.00 0.00 0.00 3.95
71 72 1.219664 CCTTACATCCCGGTGCGAA 59.780 57.895 0.00 0.00 0.00 4.70
72 73 2.727392 CCCTTACATCCCGGTGCGA 61.727 63.158 0.00 0.00 0.00 5.10
73 74 2.203015 CCCTTACATCCCGGTGCG 60.203 66.667 0.00 0.00 0.00 5.34
74 75 1.451387 CACCCTTACATCCCGGTGC 60.451 63.158 0.00 0.00 39.40 5.01
75 76 4.954933 CACCCTTACATCCCGGTG 57.045 61.111 0.00 0.00 39.85 4.94
76 77 0.838987 ACACACCCTTACATCCCGGT 60.839 55.000 0.00 0.00 0.00 5.28
77 78 0.326927 AACACACCCTTACATCCCGG 59.673 55.000 0.00 0.00 0.00 5.73
78 79 1.810151 CAAACACACCCTTACATCCCG 59.190 52.381 0.00 0.00 0.00 5.14
79 80 2.167662 CCAAACACACCCTTACATCCC 58.832 52.381 0.00 0.00 0.00 3.85
80 81 2.871453 ACCAAACACACCCTTACATCC 58.129 47.619 0.00 0.00 0.00 3.51
81 82 4.142038 AGAACCAAACACACCCTTACATC 58.858 43.478 0.00 0.00 0.00 3.06
82 83 4.178956 AGAACCAAACACACCCTTACAT 57.821 40.909 0.00 0.00 0.00 2.29
83 84 3.655615 AGAACCAAACACACCCTTACA 57.344 42.857 0.00 0.00 0.00 2.41
84 85 3.490249 GCAAGAACCAAACACACCCTTAC 60.490 47.826 0.00 0.00 0.00 2.34
85 86 2.691011 GCAAGAACCAAACACACCCTTA 59.309 45.455 0.00 0.00 0.00 2.69
86 87 1.480545 GCAAGAACCAAACACACCCTT 59.519 47.619 0.00 0.00 0.00 3.95
87 88 1.111277 GCAAGAACCAAACACACCCT 58.889 50.000 0.00 0.00 0.00 4.34
88 89 0.104120 GGCAAGAACCAAACACACCC 59.896 55.000 0.00 0.00 0.00 4.61
89 90 0.104120 GGGCAAGAACCAAACACACC 59.896 55.000 0.00 0.00 0.00 4.16
90 91 0.248866 CGGGCAAGAACCAAACACAC 60.249 55.000 0.00 0.00 0.00 3.82
91 92 0.681564 ACGGGCAAGAACCAAACACA 60.682 50.000 0.00 0.00 0.00 3.72
92 93 1.265905 CTACGGGCAAGAACCAAACAC 59.734 52.381 0.00 0.00 0.00 3.32
93 94 1.141254 TCTACGGGCAAGAACCAAACA 59.859 47.619 0.00 0.00 0.00 2.83
94 95 1.886886 TCTACGGGCAAGAACCAAAC 58.113 50.000 0.00 0.00 0.00 2.93
95 96 2.432444 CATCTACGGGCAAGAACCAAA 58.568 47.619 0.00 0.00 0.00 3.28
96 97 1.948611 GCATCTACGGGCAAGAACCAA 60.949 52.381 0.00 0.00 0.00 3.67
97 98 0.392461 GCATCTACGGGCAAGAACCA 60.392 55.000 0.00 0.00 0.00 3.67
98 99 1.095807 GGCATCTACGGGCAAGAACC 61.096 60.000 0.00 0.00 0.00 3.62
99 100 1.095807 GGGCATCTACGGGCAAGAAC 61.096 60.000 0.00 0.00 0.00 3.01
100 101 1.223487 GGGCATCTACGGGCAAGAA 59.777 57.895 0.00 0.00 0.00 2.52
101 102 1.689233 AGGGCATCTACGGGCAAGA 60.689 57.895 0.00 0.00 0.00 3.02
102 103 1.524621 CAGGGCATCTACGGGCAAG 60.525 63.158 0.00 0.00 0.00 4.01
103 104 2.589540 CAGGGCATCTACGGGCAA 59.410 61.111 0.00 0.00 0.00 4.52
104 105 4.175337 GCAGGGCATCTACGGGCA 62.175 66.667 0.00 0.00 0.00 5.36
105 106 4.937431 GGCAGGGCATCTACGGGC 62.937 72.222 0.00 0.00 0.00 6.13
106 107 2.343475 ATTGGCAGGGCATCTACGGG 62.343 60.000 0.00 0.00 0.00 5.28
107 108 0.396435 TATTGGCAGGGCATCTACGG 59.604 55.000 0.00 0.00 0.00 4.02
108 109 2.479566 ATATTGGCAGGGCATCTACG 57.520 50.000 0.00 0.00 0.00 3.51
109 110 2.821969 CCAATATTGGCAGGGCATCTAC 59.178 50.000 21.32 0.00 42.21 2.59
110 111 3.159213 CCAATATTGGCAGGGCATCTA 57.841 47.619 21.32 0.00 42.21 1.98
111 112 2.005370 CCAATATTGGCAGGGCATCT 57.995 50.000 21.32 0.00 42.21 2.90
136 137 5.058490 GTGGAATCCCATGCCAAATAATTG 58.942 41.667 0.00 0.00 45.68 2.32
137 138 4.102996 GGTGGAATCCCATGCCAAATAATT 59.897 41.667 0.00 0.00 45.68 1.40
138 139 3.647590 GGTGGAATCCCATGCCAAATAAT 59.352 43.478 0.00 0.00 45.68 1.28
139 140 3.037549 GGTGGAATCCCATGCCAAATAA 58.962 45.455 0.00 0.00 45.68 1.40
140 141 2.676748 GGTGGAATCCCATGCCAAATA 58.323 47.619 0.00 0.00 45.68 1.40
141 142 1.499368 GGTGGAATCCCATGCCAAAT 58.501 50.000 0.00 0.00 45.68 2.32
142 143 0.969917 CGGTGGAATCCCATGCCAAA 60.970 55.000 0.00 0.00 45.68 3.28
143 144 1.379710 CGGTGGAATCCCATGCCAA 60.380 57.895 0.00 0.00 45.68 4.52
144 145 2.275089 CGGTGGAATCCCATGCCA 59.725 61.111 0.00 0.00 45.68 4.92
145 146 3.219198 GCGGTGGAATCCCATGCC 61.219 66.667 0.00 0.00 45.68 4.40
146 147 3.219198 GGCGGTGGAATCCCATGC 61.219 66.667 0.00 0.00 45.68 4.06
147 148 2.519302 GGGCGGTGGAATCCCATG 60.519 66.667 0.00 0.00 45.68 3.66
148 149 3.020647 TGGGCGGTGGAATCCCAT 61.021 61.111 0.00 0.00 44.62 4.00
150 151 4.506255 CCTGGGCGGTGGAATCCC 62.506 72.222 0.00 0.00 40.47 3.85
151 152 4.506255 CCCTGGGCGGTGGAATCC 62.506 72.222 0.00 0.00 0.00 3.01
152 153 3.282374 AACCCTGGGCGGTGGAATC 62.282 63.158 14.08 0.00 35.83 2.52
153 154 3.264845 AACCCTGGGCGGTGGAAT 61.265 61.111 14.08 0.00 35.83 3.01
154 155 4.278513 CAACCCTGGGCGGTGGAA 62.279 66.667 14.08 0.00 35.83 3.53
162 163 0.770499 AAATTTTGGCCAACCCTGGG 59.230 50.000 20.35 12.28 43.74 4.45
163 164 2.228925 CAAAATTTTGGCCAACCCTGG 58.771 47.619 20.35 2.56 46.65 4.45
174 175 6.847956 TCACAGATTCTTGCCAAAATTTTG 57.152 33.333 21.65 21.65 37.90 2.44
175 176 6.484308 CCTTCACAGATTCTTGCCAAAATTTT 59.516 34.615 0.00 0.00 0.00 1.82
176 177 5.993441 CCTTCACAGATTCTTGCCAAAATTT 59.007 36.000 0.00 0.00 0.00 1.82
177 178 5.305128 TCCTTCACAGATTCTTGCCAAAATT 59.695 36.000 0.00 0.00 0.00 1.82
178 179 4.834496 TCCTTCACAGATTCTTGCCAAAAT 59.166 37.500 0.00 0.00 0.00 1.82
179 180 4.214310 TCCTTCACAGATTCTTGCCAAAA 58.786 39.130 0.00 0.00 0.00 2.44
180 181 3.831323 TCCTTCACAGATTCTTGCCAAA 58.169 40.909 0.00 0.00 0.00 3.28
181 182 3.507162 TCCTTCACAGATTCTTGCCAA 57.493 42.857 0.00 0.00 0.00 4.52
182 183 3.415212 CTTCCTTCACAGATTCTTGCCA 58.585 45.455 0.00 0.00 0.00 4.92
183 184 2.751806 CCTTCCTTCACAGATTCTTGCC 59.248 50.000 0.00 0.00 0.00 4.52
184 185 3.679389 TCCTTCCTTCACAGATTCTTGC 58.321 45.455 0.00 0.00 0.00 4.01
185 186 5.065914 TGTTCCTTCCTTCACAGATTCTTG 58.934 41.667 0.00 0.00 0.00 3.02
186 187 5.310409 TGTTCCTTCCTTCACAGATTCTT 57.690 39.130 0.00 0.00 0.00 2.52
187 188 4.982241 TGTTCCTTCCTTCACAGATTCT 57.018 40.909 0.00 0.00 0.00 2.40
188 189 4.457257 CCTTGTTCCTTCCTTCACAGATTC 59.543 45.833 0.00 0.00 0.00 2.52
189 190 4.401925 CCTTGTTCCTTCCTTCACAGATT 58.598 43.478 0.00 0.00 0.00 2.40
190 191 3.245052 CCCTTGTTCCTTCCTTCACAGAT 60.245 47.826 0.00 0.00 0.00 2.90
191 192 2.106511 CCCTTGTTCCTTCCTTCACAGA 59.893 50.000 0.00 0.00 0.00 3.41
192 193 2.106511 TCCCTTGTTCCTTCCTTCACAG 59.893 50.000 0.00 0.00 0.00 3.66
193 194 2.131854 TCCCTTGTTCCTTCCTTCACA 58.868 47.619 0.00 0.00 0.00 3.58
194 195 2.106684 AGTCCCTTGTTCCTTCCTTCAC 59.893 50.000 0.00 0.00 0.00 3.18
195 196 2.372172 GAGTCCCTTGTTCCTTCCTTCA 59.628 50.000 0.00 0.00 0.00 3.02
196 197 2.613223 CGAGTCCCTTGTTCCTTCCTTC 60.613 54.545 0.00 0.00 0.00 3.46
197 198 1.348036 CGAGTCCCTTGTTCCTTCCTT 59.652 52.381 0.00 0.00 0.00 3.36
198 199 0.977395 CGAGTCCCTTGTTCCTTCCT 59.023 55.000 0.00 0.00 0.00 3.36
199 200 0.685660 ACGAGTCCCTTGTTCCTTCC 59.314 55.000 0.00 0.00 0.00 3.46
200 201 2.143925 CAACGAGTCCCTTGTTCCTTC 58.856 52.381 0.00 0.00 36.08 3.46
201 202 1.202770 CCAACGAGTCCCTTGTTCCTT 60.203 52.381 0.00 0.00 36.08 3.36
202 203 0.396811 CCAACGAGTCCCTTGTTCCT 59.603 55.000 0.00 0.00 36.08 3.36
203 204 1.235281 GCCAACGAGTCCCTTGTTCC 61.235 60.000 0.00 0.00 36.08 3.62
204 205 0.534203 TGCCAACGAGTCCCTTGTTC 60.534 55.000 0.00 0.00 36.08 3.18
205 206 0.535102 CTGCCAACGAGTCCCTTGTT 60.535 55.000 0.00 0.00 38.49 2.83
206 207 1.071471 CTGCCAACGAGTCCCTTGT 59.929 57.895 0.00 0.00 0.00 3.16
207 208 2.328099 GCTGCCAACGAGTCCCTTG 61.328 63.158 0.00 0.00 0.00 3.61
208 209 2.032681 GCTGCCAACGAGTCCCTT 59.967 61.111 0.00 0.00 0.00 3.95
209 210 4.021925 GGCTGCCAACGAGTCCCT 62.022 66.667 15.17 0.00 0.00 4.20
210 211 3.842925 TTGGCTGCCAACGAGTCCC 62.843 63.158 29.24 0.00 38.75 4.46
211 212 1.452145 TTTTGGCTGCCAACGAGTCC 61.452 55.000 32.36 0.00 43.82 3.85
212 213 0.383949 TTTTTGGCTGCCAACGAGTC 59.616 50.000 32.36 0.00 43.82 3.36
213 214 1.039856 ATTTTTGGCTGCCAACGAGT 58.960 45.000 32.36 17.91 43.82 4.18
214 215 2.153366 AATTTTTGGCTGCCAACGAG 57.847 45.000 32.36 0.00 43.82 4.18
215 216 2.208431 CAAATTTTTGGCTGCCAACGA 58.792 42.857 32.36 23.11 43.82 3.85
216 217 2.666836 CAAATTTTTGGCTGCCAACG 57.333 45.000 32.36 13.39 43.82 4.10
226 227 5.632347 TGTTTGCTTTGTTGCCAAATTTTTG 59.368 32.000 0.00 0.00 39.72 2.44
227 228 5.632764 GTGTTTGCTTTGTTGCCAAATTTTT 59.367 32.000 0.00 0.00 39.72 1.94
228 229 5.159925 GTGTTTGCTTTGTTGCCAAATTTT 58.840 33.333 0.00 0.00 39.72 1.82
229 230 4.380339 GGTGTTTGCTTTGTTGCCAAATTT 60.380 37.500 0.00 0.00 39.72 1.82
230 231 3.128415 GGTGTTTGCTTTGTTGCCAAATT 59.872 39.130 0.00 0.00 39.72 1.82
231 232 2.682352 GGTGTTTGCTTTGTTGCCAAAT 59.318 40.909 0.00 0.00 39.72 2.32
232 233 2.079925 GGTGTTTGCTTTGTTGCCAAA 58.920 42.857 0.00 0.00 38.22 3.28
233 234 1.002430 TGGTGTTTGCTTTGTTGCCAA 59.998 42.857 0.00 0.00 0.00 4.52
234 235 0.610174 TGGTGTTTGCTTTGTTGCCA 59.390 45.000 0.00 0.00 0.00 4.92
235 236 1.952193 ATGGTGTTTGCTTTGTTGCC 58.048 45.000 0.00 0.00 0.00 4.52
236 237 3.452474 TGTATGGTGTTTGCTTTGTTGC 58.548 40.909 0.00 0.00 0.00 4.17
237 238 5.006552 CCTTTGTATGGTGTTTGCTTTGTTG 59.993 40.000 0.00 0.00 0.00 3.33
238 239 5.105146 TCCTTTGTATGGTGTTTGCTTTGTT 60.105 36.000 0.00 0.00 0.00 2.83
239 240 4.404073 TCCTTTGTATGGTGTTTGCTTTGT 59.596 37.500 0.00 0.00 0.00 2.83
240 241 4.942852 TCCTTTGTATGGTGTTTGCTTTG 58.057 39.130 0.00 0.00 0.00 2.77
241 242 5.806654 ATCCTTTGTATGGTGTTTGCTTT 57.193 34.783 0.00 0.00 0.00 3.51
242 243 5.806654 AATCCTTTGTATGGTGTTTGCTT 57.193 34.783 0.00 0.00 0.00 3.91
243 244 5.511202 CCAAATCCTTTGTATGGTGTTTGCT 60.511 40.000 0.00 0.00 38.98 3.91
244 245 4.690280 CCAAATCCTTTGTATGGTGTTTGC 59.310 41.667 0.00 0.00 38.98 3.68
245 246 4.690280 GCCAAATCCTTTGTATGGTGTTTG 59.310 41.667 0.00 0.00 38.98 2.93
246 247 4.346418 TGCCAAATCCTTTGTATGGTGTTT 59.654 37.500 0.00 0.00 38.98 2.83
247 248 3.900601 TGCCAAATCCTTTGTATGGTGTT 59.099 39.130 0.00 0.00 38.98 3.32
248 249 3.505386 TGCCAAATCCTTTGTATGGTGT 58.495 40.909 0.00 0.00 38.98 4.16
249 250 4.160065 TCATGCCAAATCCTTTGTATGGTG 59.840 41.667 11.10 0.00 38.98 4.17
250 251 4.160252 GTCATGCCAAATCCTTTGTATGGT 59.840 41.667 11.10 0.00 38.98 3.55
251 252 4.441913 GGTCATGCCAAATCCTTTGTATGG 60.442 45.833 1.78 0.00 38.98 2.74
252 253 4.160065 TGGTCATGCCAAATCCTTTGTATG 59.840 41.667 6.42 4.16 45.94 2.39
253 254 4.352009 TGGTCATGCCAAATCCTTTGTAT 58.648 39.130 6.42 0.00 45.94 2.29
254 255 3.772387 TGGTCATGCCAAATCCTTTGTA 58.228 40.909 6.42 0.00 45.94 2.41
255 256 2.607499 TGGTCATGCCAAATCCTTTGT 58.393 42.857 6.42 0.00 45.94 2.83
274 275 5.127031 CCCAACTCACCCTACCAAAATATTG 59.873 44.000 0.00 0.00 36.25 1.90
275 276 5.269189 CCCAACTCACCCTACCAAAATATT 58.731 41.667 0.00 0.00 0.00 1.28
276 277 4.325816 CCCCAACTCACCCTACCAAAATAT 60.326 45.833 0.00 0.00 0.00 1.28
277 278 3.010808 CCCCAACTCACCCTACCAAAATA 59.989 47.826 0.00 0.00 0.00 1.40
278 279 2.225267 CCCCAACTCACCCTACCAAAAT 60.225 50.000 0.00 0.00 0.00 1.82
279 280 1.146152 CCCCAACTCACCCTACCAAAA 59.854 52.381 0.00 0.00 0.00 2.44
280 281 0.774908 CCCCAACTCACCCTACCAAA 59.225 55.000 0.00 0.00 0.00 3.28
281 282 1.137594 CCCCCAACTCACCCTACCAA 61.138 60.000 0.00 0.00 0.00 3.67
282 283 1.540367 CCCCCAACTCACCCTACCA 60.540 63.158 0.00 0.00 0.00 3.25
283 284 2.980177 GCCCCCAACTCACCCTACC 61.980 68.421 0.00 0.00 0.00 3.18
284 285 1.571773 ATGCCCCCAACTCACCCTAC 61.572 60.000 0.00 0.00 0.00 3.18
285 286 0.045008 TATGCCCCCAACTCACCCTA 59.955 55.000 0.00 0.00 0.00 3.53
286 287 0.849094 TTATGCCCCCAACTCACCCT 60.849 55.000 0.00 0.00 0.00 4.34
287 288 0.040499 TTTATGCCCCCAACTCACCC 59.960 55.000 0.00 0.00 0.00 4.61
288 289 1.182667 GTTTATGCCCCCAACTCACC 58.817 55.000 0.00 0.00 0.00 4.02
289 290 1.182667 GGTTTATGCCCCCAACTCAC 58.817 55.000 0.00 0.00 0.00 3.51
290 291 0.780637 TGGTTTATGCCCCCAACTCA 59.219 50.000 0.00 0.00 0.00 3.41
291 292 1.931635 TTGGTTTATGCCCCCAACTC 58.068 50.000 0.00 0.00 33.43 3.01
292 293 1.974957 GTTTGGTTTATGCCCCCAACT 59.025 47.619 0.00 0.00 37.95 3.16
293 294 1.694696 TGTTTGGTTTATGCCCCCAAC 59.305 47.619 0.00 0.00 37.95 3.77
294 295 1.974236 CTGTTTGGTTTATGCCCCCAA 59.026 47.619 0.00 0.00 36.49 4.12
295 296 1.638529 CTGTTTGGTTTATGCCCCCA 58.361 50.000 0.00 0.00 0.00 4.96
296 297 0.249120 GCTGTTTGGTTTATGCCCCC 59.751 55.000 0.00 0.00 0.00 5.40
297 298 0.249120 GGCTGTTTGGTTTATGCCCC 59.751 55.000 0.00 0.00 34.81 5.80
298 299 3.832704 GGCTGTTTGGTTTATGCCC 57.167 52.632 0.00 0.00 34.81 5.36
299 300 0.249120 GGGGCTGTTTGGTTTATGCC 59.751 55.000 0.00 0.00 39.61 4.40
300 301 1.266178 AGGGGCTGTTTGGTTTATGC 58.734 50.000 0.00 0.00 0.00 3.14
301 302 4.340617 TCTTAGGGGCTGTTTGGTTTATG 58.659 43.478 0.00 0.00 0.00 1.90
302 303 4.668138 TCTTAGGGGCTGTTTGGTTTAT 57.332 40.909 0.00 0.00 0.00 1.40
303 304 4.668138 ATCTTAGGGGCTGTTTGGTTTA 57.332 40.909 0.00 0.00 0.00 2.01
304 305 3.542969 ATCTTAGGGGCTGTTTGGTTT 57.457 42.857 0.00 0.00 0.00 3.27
305 306 3.542969 AATCTTAGGGGCTGTTTGGTT 57.457 42.857 0.00 0.00 0.00 3.67
306 307 3.542969 AAATCTTAGGGGCTGTTTGGT 57.457 42.857 0.00 0.00 0.00 3.67
307 308 4.342092 CCATAAATCTTAGGGGCTGTTTGG 59.658 45.833 0.00 0.00 0.00 3.28
308 309 4.202151 GCCATAAATCTTAGGGGCTGTTTG 60.202 45.833 0.00 0.00 38.37 2.93
309 310 3.960755 GCCATAAATCTTAGGGGCTGTTT 59.039 43.478 0.00 0.00 38.37 2.83
310 311 3.566351 GCCATAAATCTTAGGGGCTGTT 58.434 45.455 0.00 0.00 38.37 3.16
311 312 3.229697 GCCATAAATCTTAGGGGCTGT 57.770 47.619 0.00 0.00 38.37 4.40
314 315 3.687125 GGTAGCCATAAATCTTAGGGGC 58.313 50.000 0.00 0.00 41.65 5.80
315 316 3.326880 ACGGTAGCCATAAATCTTAGGGG 59.673 47.826 0.00 0.00 0.00 4.79
316 317 4.618920 ACGGTAGCCATAAATCTTAGGG 57.381 45.455 0.00 0.00 0.00 3.53
317 318 6.649557 CCTAAACGGTAGCCATAAATCTTAGG 59.350 42.308 0.00 0.00 0.00 2.69
318 319 7.439381 TCCTAAACGGTAGCCATAAATCTTAG 58.561 38.462 0.00 0.00 0.00 2.18
422 423 7.639113 TCAACTCCGGAAAATAATAGCAATT 57.361 32.000 5.23 0.00 0.00 2.32
445 446 9.366216 GTTGTGGAAATAATGACCCTTTATTTC 57.634 33.333 19.20 19.20 46.09 2.17
512 513 2.594592 GCTTTGCCGAGGGTGTGT 60.595 61.111 0.00 0.00 0.00 3.72
516 517 2.564721 GCTTTGCTTTGCCGAGGGT 61.565 57.895 0.00 0.00 0.00 4.34
517 518 0.960364 TAGCTTTGCTTTGCCGAGGG 60.960 55.000 0.00 0.00 40.44 4.30
518 519 0.449388 CTAGCTTTGCTTTGCCGAGG 59.551 55.000 0.00 0.00 40.44 4.63
519 520 0.179179 GCTAGCTTTGCTTTGCCGAG 60.179 55.000 7.70 0.00 40.44 4.63
520 521 1.586154 GGCTAGCTTTGCTTTGCCGA 61.586 55.000 15.72 0.00 43.01 5.54
521 522 1.153958 GGCTAGCTTTGCTTTGCCG 60.154 57.895 15.72 0.00 43.01 5.69
626 627 1.449778 GGGTTAGCAAGGTCGGAGC 60.450 63.158 0.00 0.00 0.00 4.70
670 671 1.078072 TCGCACACACTGGTTGGTT 60.078 52.632 0.00 0.00 0.00 3.67
671 672 1.523711 CTCGCACACACTGGTTGGT 60.524 57.895 0.00 0.00 0.00 3.67
672 673 2.896801 GCTCGCACACACTGGTTGG 61.897 63.158 0.00 0.00 0.00 3.77
673 674 2.633657 GCTCGCACACACTGGTTG 59.366 61.111 0.00 0.00 0.00 3.77
755 765 0.341609 GGGGAAATTTGGGGATGGGA 59.658 55.000 0.00 0.00 0.00 4.37
910 921 4.258704 CGAAAAATTAAAACCCGAATCGCG 60.259 41.667 0.00 0.00 40.47 5.87
941 952 1.705337 CTGCAAATACCCCAGTCGCG 61.705 60.000 0.00 0.00 0.00 5.87
945 956 1.378514 CGCCTGCAAATACCCCAGT 60.379 57.895 0.00 0.00 0.00 4.00
1063 1081 2.048222 CACTCTTCCGCCGCAGAA 60.048 61.111 0.00 0.00 0.00 3.02
1274 1310 4.992511 CCCCGACAAAACCGCCGA 62.993 66.667 0.00 0.00 0.00 5.54
1365 1401 3.492068 GGGAACTCCGAACCCCTT 58.508 61.111 0.00 0.00 37.85 3.95
1493 1529 1.179174 GGAAGGTGCAGTTCCAACCC 61.179 60.000 18.95 0.60 42.79 4.11
1627 1663 1.079612 CATCTGACACTGGAGCGCA 60.080 57.895 11.47 0.00 0.00 6.09
1700 1736 1.702401 TCACCACCAAATCAGCACCTA 59.298 47.619 0.00 0.00 0.00 3.08
1857 1893 0.667184 GGGCATCAAACTGCAAACCG 60.667 55.000 0.00 0.00 44.12 4.44
1985 2021 5.046591 TCCTCCAGTTCCTGTACATTTAGTG 60.047 44.000 0.00 0.00 0.00 2.74
1987 2023 5.395768 CCTCCTCCAGTTCCTGTACATTTAG 60.396 48.000 0.00 0.00 0.00 1.85
2050 2086 6.108687 TGATATTGCTGTGAGTAACTGGAAG 58.891 40.000 0.00 0.00 40.46 3.46
2130 2166 0.617820 ATACACTCTCCCCCTTGCGT 60.618 55.000 0.00 0.00 0.00 5.24
2214 2250 6.566197 AGATCTTCAGCAAAAGGTTTACTG 57.434 37.500 0.00 0.00 0.00 2.74
2225 2261 3.782523 AGTATCCCCAAGATCTTCAGCAA 59.217 43.478 4.57 0.00 36.33 3.91
2273 2324 6.236409 TCCTGTACCTCTACTATTACATCCG 58.764 44.000 0.00 0.00 0.00 4.18
2330 2381 1.680249 GGTTCTCTTGGAGGACATGGC 60.680 57.143 8.07 0.00 39.79 4.40
2352 2403 5.484715 TGTAGGCTATTGTTGTGAGTAACC 58.515 41.667 0.00 0.00 0.00 2.85
2422 2473 1.081892 CTCACAGAAGGTTCCGCATG 58.918 55.000 0.00 0.00 0.00 4.06
2453 2504 3.969287 TGTTCACAGGGATCTTCTCAG 57.031 47.619 0.00 0.00 0.00 3.35
2560 2611 3.582647 TCAGGAGGAGTTTTACATGCAGA 59.417 43.478 0.00 0.00 0.00 4.26
2572 2623 1.022903 AGGGGATCTTCAGGAGGAGT 58.977 55.000 0.00 0.00 0.00 3.85
2606 2657 7.283329 ACAACTTTCAGACACTTTCTTATCCT 58.717 34.615 0.00 0.00 28.96 3.24
2701 2752 4.457257 AGAAGGTTTTCTAGCTGTGAATGC 59.543 41.667 0.00 0.00 41.82 3.56
2750 2801 5.407407 TTCAGGAGAAGGTTTACTAGCAG 57.593 43.478 0.00 0.00 0.00 4.24
2824 2875 4.634184 CATCAAGAGATGCCCTTTTCAG 57.366 45.455 0.00 0.00 44.61 3.02
2885 2936 6.092122 TGTTTTTCTAGCTGTGAATGATACCG 59.908 38.462 0.00 0.00 0.00 4.02
2946 2997 4.099573 CACGGTCTATCCAGATTTACCAGT 59.900 45.833 10.15 7.06 35.57 4.00
2952 3003 6.463049 CCATAGAACACGGTCTATCCAGATTT 60.463 42.308 1.50 0.00 38.52 2.17
2999 3050 3.118629 AGCAAAGGATTCGCTCATAGTGA 60.119 43.478 0.00 0.00 32.06 3.41
3026 3077 8.631480 TGGACCTTTTATCTTTAACTTCTTCC 57.369 34.615 0.00 0.00 0.00 3.46
3052 3103 6.095440 TCCTTGGCAAGATATTTACTTTGAGC 59.905 38.462 28.18 0.00 0.00 4.26
3070 3121 4.317488 TCATGCTTCAATTTTTCCTTGGC 58.683 39.130 0.00 0.00 0.00 4.52
3136 3220 5.644644 GGACTTATGATTTGCTTCAACAGG 58.355 41.667 0.00 0.00 0.00 4.00
3160 3244 3.060602 GTCTATCCAGATTAACCAGCGC 58.939 50.000 0.00 0.00 32.09 5.92
3174 3258 3.327757 TGCCCATAGAACATGGTCTATCC 59.672 47.826 27.09 18.74 38.52 2.59
3198 3282 2.630580 AGTGACAACAGACTCCTTCTCC 59.369 50.000 0.00 0.00 28.96 3.71
3200 3284 5.080337 TCATAGTGACAACAGACTCCTTCT 58.920 41.667 0.00 0.00 33.33 2.85
3265 3349 6.957631 TGGGAAGATATTTACTTTGAGCTGA 58.042 36.000 0.00 0.00 0.00 4.26
3547 3631 3.375299 AGTTTATCAGCGGCAAGATCAAC 59.625 43.478 17.42 17.42 0.00 3.18
3585 3669 0.541998 GCCCCTGTTTGGTAAAGCCT 60.542 55.000 0.00 0.00 38.35 4.58
4033 4117 1.981256 TTGAAGACCCTTGAACCTGC 58.019 50.000 0.00 0.00 0.00 4.85
4182 4266 7.654568 CAGCATCAATATTATTGACCACACAT 58.345 34.615 18.86 1.77 0.00 3.21
4248 4332 6.974965 ACTTCTTTTTGCAGTTAAGGATGAG 58.025 36.000 0.00 0.00 0.00 2.90
4506 4590 4.153411 AGATGGACCTTAGGGATCTTACG 58.847 47.826 2.32 0.00 36.25 3.18
4673 4757 0.980231 AGAGCGAGGGCCAGAAGAAT 60.980 55.000 6.18 0.00 41.24 2.40
4866 4950 4.093011 AGTCATAAGTCAGCTCCTGAAGT 58.907 43.478 0.00 0.00 42.46 3.01
4869 4953 8.484214 AATTATAGTCATAAGTCAGCTCCTGA 57.516 34.615 0.00 0.00 32.64 3.86
4987 5071 5.299531 AGAAAAAGAAAAAGCCTTCTACGCT 59.700 36.000 0.00 0.00 34.49 5.07
5102 5186 2.297701 GTTGAAAGAGGAGGCAACACA 58.702 47.619 0.00 0.00 40.11 3.72
5103 5187 1.609072 GGTTGAAAGAGGAGGCAACAC 59.391 52.381 0.00 0.00 41.65 3.32
5189 5275 6.867662 AACAGAATCACAACCTCTTTAGTG 57.132 37.500 0.00 0.00 0.00 2.74
5230 5316 8.668510 ATTGTATGAATCATGAGGTTCTGTAC 57.331 34.615 5.91 9.12 0.00 2.90
5309 5425 6.084738 ACCTCCATAGTTCTATCCTGCAATA 58.915 40.000 0.00 0.00 0.00 1.90
5379 5495 5.412594 CCTCAAAGCAGTTATAGCAGTGAAA 59.587 40.000 0.00 0.00 30.18 2.69
5381 5497 4.222810 TCCTCAAAGCAGTTATAGCAGTGA 59.777 41.667 0.00 0.00 0.00 3.41
5383 5499 4.826274 TCCTCAAAGCAGTTATAGCAGT 57.174 40.909 0.00 0.00 0.00 4.40
5478 5609 3.386726 CCTCCGTCCCATAATGTAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
5479 5610 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
5493 5624 5.183522 CCTAGAAACATATACTCCCTCCGTC 59.816 48.000 0.00 0.00 0.00 4.79
5576 5707 8.656849 GTTGGCCTAATATTCAGTACAATATCG 58.343 37.037 3.32 0.00 30.05 2.92
5582 5713 9.283768 CAATATGTTGGCCTAATATTCAGTACA 57.716 33.333 3.32 0.00 0.00 2.90
5607 5738 0.609406 AGCGTCTCTAGTCACAGGCA 60.609 55.000 0.00 0.00 0.00 4.75
5609 5740 0.453793 CCAGCGTCTCTAGTCACAGG 59.546 60.000 0.00 0.00 0.00 4.00
5612 5743 0.736053 CCTCCAGCGTCTCTAGTCAC 59.264 60.000 0.00 0.00 0.00 3.67
5634 5765 9.174166 GAGGCTAATAAGAATTTCCACAAAGTA 57.826 33.333 0.00 0.00 0.00 2.24
5637 5768 8.469200 CATGAGGCTAATAAGAATTTCCACAAA 58.531 33.333 0.00 0.00 0.00 2.83
5639 5770 6.039717 GCATGAGGCTAATAAGAATTTCCACA 59.960 38.462 0.00 0.00 40.25 4.17
5640 5771 6.039717 TGCATGAGGCTAATAAGAATTTCCAC 59.960 38.462 0.00 0.00 45.15 4.02
5666 5797 1.898472 AGATACAGGCTGCGCAGATAT 59.102 47.619 40.21 27.28 0.00 1.63
5668 5799 0.249784 CAGATACAGGCTGCGCAGAT 60.250 55.000 40.21 24.04 0.00 2.90
5686 5817 4.157656 AGTTCAAGTTGCAAGTAAACAGCA 59.842 37.500 23.75 0.00 36.32 4.41
5687 5818 4.500477 CAGTTCAAGTTGCAAGTAAACAGC 59.500 41.667 23.75 9.12 0.00 4.40
5688 5819 5.036737 CCAGTTCAAGTTGCAAGTAAACAG 58.963 41.667 23.75 18.70 0.00 3.16
5689 5820 4.702612 TCCAGTTCAAGTTGCAAGTAAACA 59.297 37.500 23.75 9.49 0.00 2.83
5690 5821 5.243426 TCCAGTTCAAGTTGCAAGTAAAC 57.757 39.130 18.21 18.21 0.00 2.01
5691 5822 5.906113 TTCCAGTTCAAGTTGCAAGTAAA 57.094 34.783 7.33 2.62 0.00 2.01
5692 5823 6.096141 TGAATTCCAGTTCAAGTTGCAAGTAA 59.904 34.615 7.33 0.00 35.31 2.24
5693 5824 5.592282 TGAATTCCAGTTCAAGTTGCAAGTA 59.408 36.000 7.33 0.00 35.31 2.24
5710 5841 4.680171 ACGATTTCGGAACTTGAATTCC 57.320 40.909 2.27 0.00 44.19 3.01
5740 5871 7.015877 GGATCAGTTAATTTTCGACAGTCAAC 58.984 38.462 0.41 0.00 0.00 3.18
5785 5916 7.358066 GGTAGATGCAACATCAGTTATTCATG 58.642 38.462 10.02 0.00 35.85 3.07
5809 5940 1.218316 GTGGCTGTCGAACTAGGGG 59.782 63.158 0.00 0.00 0.00 4.79
5823 5954 3.128349 TCTTCACGTCAAGTAAAGTGGC 58.872 45.455 0.00 0.00 35.50 5.01
5839 5970 4.536765 ACCCTTTCTTTTTCAGCTCTTCA 58.463 39.130 0.00 0.00 0.00 3.02
5846 5977 9.986833 CAATTTTTACAACCCTTTCTTTTTCAG 57.013 29.630 0.00 0.00 0.00 3.02
5871 6002 4.345854 AGGCAATTACCGTAAAAATCCCA 58.654 39.130 0.00 0.00 33.69 4.37
5891 6022 0.257039 ATGCACCTAGGAGCCAAAGG 59.743 55.000 25.94 6.43 36.42 3.11
5892 6023 3.144506 CATATGCACCTAGGAGCCAAAG 58.855 50.000 25.94 11.57 0.00 2.77
5893 6024 2.749466 GCATATGCACCTAGGAGCCAAA 60.749 50.000 25.94 13.05 41.59 3.28
5894 6025 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
5895 6026 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
5896 6027 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
5907 6038 1.308047 TCGACAATGGGTGCATATGC 58.692 50.000 21.09 21.09 42.50 3.14
5908 6039 4.572985 ATTTCGACAATGGGTGCATATG 57.427 40.909 0.00 0.00 0.00 1.78
5909 6040 5.008613 GTGTATTTCGACAATGGGTGCATAT 59.991 40.000 0.00 0.00 0.00 1.78
5910 6041 4.334203 GTGTATTTCGACAATGGGTGCATA 59.666 41.667 0.00 0.00 0.00 3.14
5911 6042 3.128589 GTGTATTTCGACAATGGGTGCAT 59.871 43.478 0.00 0.00 0.00 3.96
5912 6043 2.486203 GTGTATTTCGACAATGGGTGCA 59.514 45.455 0.00 0.00 0.00 4.57
5913 6044 2.486203 TGTGTATTTCGACAATGGGTGC 59.514 45.455 0.00 0.00 0.00 5.01
5914 6045 4.963276 ATGTGTATTTCGACAATGGGTG 57.037 40.909 0.00 0.00 0.00 4.61
5915 6046 5.949735 GAAATGTGTATTTCGACAATGGGT 58.050 37.500 0.00 0.00 41.81 4.51
5948 6079 4.334203 GCGGGGTTTTTGTTCTGAATTTTT 59.666 37.500 0.00 0.00 0.00 1.94
5949 6080 3.874543 GCGGGGTTTTTGTTCTGAATTTT 59.125 39.130 0.00 0.00 0.00 1.82
5950 6081 3.462982 GCGGGGTTTTTGTTCTGAATTT 58.537 40.909 0.00 0.00 0.00 1.82
5951 6082 2.544903 CGCGGGGTTTTTGTTCTGAATT 60.545 45.455 0.00 0.00 0.00 2.17
5952 6083 1.000717 CGCGGGGTTTTTGTTCTGAAT 60.001 47.619 0.00 0.00 0.00 2.57
5953 6084 0.382515 CGCGGGGTTTTTGTTCTGAA 59.617 50.000 0.00 0.00 0.00 3.02
5954 6085 0.748729 ACGCGGGGTTTTTGTTCTGA 60.749 50.000 12.47 0.00 0.00 3.27
5955 6086 0.593773 CACGCGGGGTTTTTGTTCTG 60.594 55.000 12.47 0.00 0.00 3.02
5956 6087 1.033202 ACACGCGGGGTTTTTGTTCT 61.033 50.000 15.46 0.00 0.00 3.01
5957 6088 0.662085 TACACGCGGGGTTTTTGTTC 59.338 50.000 15.46 0.00 0.00 3.18
5958 6089 1.320507 ATACACGCGGGGTTTTTGTT 58.679 45.000 15.46 0.00 0.00 2.83
5959 6090 2.181954 TATACACGCGGGGTTTTTGT 57.818 45.000 15.46 7.48 0.00 2.83
5960 6091 2.032426 GGATATACACGCGGGGTTTTTG 59.968 50.000 15.46 0.12 0.00 2.44
5961 6092 2.291365 GGATATACACGCGGGGTTTTT 58.709 47.619 15.46 0.00 0.00 1.94
5962 6093 1.807377 CGGATATACACGCGGGGTTTT 60.807 52.381 15.46 3.58 0.00 2.43
5963 6094 0.249573 CGGATATACACGCGGGGTTT 60.250 55.000 15.46 7.35 0.00 3.27
5964 6095 1.364901 CGGATATACACGCGGGGTT 59.635 57.895 15.46 0.91 0.00 4.11
5965 6096 2.567497 CCGGATATACACGCGGGGT 61.567 63.158 15.46 12.52 0.00 4.95
5966 6097 2.260434 CCGGATATACACGCGGGG 59.740 66.667 15.46 5.78 0.00 5.73
5967 6098 1.080974 GTCCGGATATACACGCGGG 60.081 63.158 6.92 6.92 0.00 6.13
5968 6099 1.655885 TGTCCGGATATACACGCGG 59.344 57.895 7.81 1.27 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.