Multiple sequence alignment - TraesCS1B01G135600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G135600 chr1B 100.000 5123 0 0 1 5123 172891474 172896596 0.000000e+00 9461.0
1 TraesCS1B01G135600 chr1B 98.185 1653 30 0 1069 2721 72065292 72066944 0.000000e+00 2887.0
2 TraesCS1B01G135600 chr1B 98.250 1600 24 3 3130 4728 72075695 72077291 0.000000e+00 2796.0
3 TraesCS1B01G135600 chr1B 96.445 647 4 2 4195 4822 252587788 252587142 0.000000e+00 1050.0
4 TraesCS1B01G135600 chr1B 97.628 253 4 1 2884 3134 72066961 72067213 2.830000e-117 433.0
5 TraesCS1B01G135600 chr1B 88.636 132 10 3 4698 4827 104001990 104002118 6.870000e-34 156.0
6 TraesCS1B01G135600 chr1B 94.595 74 4 0 2338 2411 589455869 589455942 1.170000e-21 115.0
7 TraesCS1B01G135600 chr5A 98.635 4541 58 3 190 4728 181403696 181399158 0.000000e+00 8039.0
8 TraesCS1B01G135600 chr5A 95.536 112 5 0 1 112 172131167 172131278 4.080000e-41 180.0
9 TraesCS1B01G135600 chr5A 98.980 98 0 1 4731 4828 181399096 181399000 1.900000e-39 174.0
10 TraesCS1B01G135600 chr5B 98.008 4619 55 7 116 4728 14676970 14672383 0.000000e+00 7986.0
11 TraesCS1B01G135600 chr5B 97.835 4618 68 6 113 4727 624699026 624694438 0.000000e+00 7945.0
12 TraesCS1B01G135600 chr5B 98.637 3301 40 5 1430 4728 628283778 628280481 0.000000e+00 5842.0
13 TraesCS1B01G135600 chr5B 97.494 1317 31 1 113 1427 628285447 628284131 0.000000e+00 2248.0
14 TraesCS1B01G135600 chr5B 89.796 147 10 2 2045 2191 699686728 699686587 3.150000e-42 183.0
15 TraesCS1B01G135600 chr5B 98.980 98 1 0 4731 4828 118345336 118345433 5.270000e-40 176.0
16 TraesCS1B01G135600 chr7B 98.718 3121 31 4 1085 4197 692601178 692604297 0.000000e+00 5533.0
17 TraesCS1B01G135600 chr7B 89.865 148 9 3 2045 2191 585075351 585075209 8.760000e-43 185.0
18 TraesCS1B01G135600 chr7A 98.816 2872 28 4 1862 4728 710788807 710791677 0.000000e+00 5110.0
19 TraesCS1B01G135600 chr7A 97.981 1040 21 0 113 1152 710787767 710788806 0.000000e+00 1805.0
20 TraesCS1B01G135600 chr7A 98.558 971 14 0 113 1083 669740583 669739613 0.000000e+00 1716.0
21 TraesCS1B01G135600 chr7A 87.251 1153 85 32 1085 2225 699291064 699292166 0.000000e+00 1258.0
22 TraesCS1B01G135600 chr7A 84.742 911 85 23 2354 3221 699292350 699293249 0.000000e+00 863.0
23 TraesCS1B01G135600 chr7A 84.615 897 77 36 3320 4197 699293301 699294155 0.000000e+00 835.0
24 TraesCS1B01G135600 chr7A 94.017 117 3 2 4711 4823 687185696 687185812 1.900000e-39 174.0
25 TraesCS1B01G135600 chr7A 94.017 117 3 2 4711 4823 687200355 687200471 1.900000e-39 174.0
26 TraesCS1B01G135600 chr3A 98.602 2503 34 1 113 2615 625561463 625558962 0.000000e+00 4427.0
27 TraesCS1B01G135600 chr3A 98.744 1911 18 3 2824 4728 625558965 625557055 0.000000e+00 3391.0
28 TraesCS1B01G135600 chr7D 88.854 1911 156 41 2298 4197 607046871 607045007 0.000000e+00 2296.0
29 TraesCS1B01G135600 chr7D 90.407 1178 62 19 1085 2240 607048289 607047141 0.000000e+00 1502.0
30 TraesCS1B01G135600 chr7D 87.732 538 42 11 1086 1620 561634324 561633808 1.580000e-169 606.0
31 TraesCS1B01G135600 chr1A 98.455 971 15 0 113 1083 8618406 8619376 0.000000e+00 1711.0
32 TraesCS1B01G135600 chr2A 98.455 971 14 1 113 1083 626130313 626131282 0.000000e+00 1709.0
33 TraesCS1B01G135600 chrUn 99.439 535 2 1 4195 4728 55071527 55072061 0.000000e+00 970.0
34 TraesCS1B01G135600 chrUn 95.455 66 3 0 2124 2189 46046851 46046786 7.020000e-19 106.0
35 TraesCS1B01G135600 chrUn 95.455 66 3 0 2124 2189 361706733 361706668 7.020000e-19 106.0
36 TraesCS1B01G135600 chrUn 90.698 43 4 0 3905 3947 269814208 269814166 1.990000e-04 58.4
37 TraesCS1B01G135600 chr3B 98.007 301 5 1 4824 5123 720143460 720143760 5.880000e-144 521.0
38 TraesCS1B01G135600 chr2D 97.980 297 6 0 4824 5120 71106032 71106328 2.730000e-142 516.0
39 TraesCS1B01G135600 chr2D 97.674 301 6 1 4824 5123 330629377 330629677 2.730000e-142 516.0
40 TraesCS1B01G135600 chr2D 97.674 301 6 1 4824 5123 491634366 491634666 2.730000e-142 516.0
41 TraesCS1B01G135600 chr3D 97.351 302 6 2 4824 5123 250137535 250137836 3.540000e-141 512.0
42 TraesCS1B01G135600 chr4D 97.342 301 7 1 4824 5123 294277095 294277395 1.270000e-140 510.0
43 TraesCS1B01G135600 chr4D 95.536 112 5 0 1 112 272938677 272938788 4.080000e-41 180.0
44 TraesCS1B01G135600 chr4D 95.536 112 5 0 1 112 472087221 472087110 4.080000e-41 180.0
45 TraesCS1B01G135600 chr4D 94.643 112 6 0 1 112 265901916 265902027 1.900000e-39 174.0
46 TraesCS1B01G135600 chr4D 81.395 86 14 2 3863 3947 8412053 8412137 9.200000e-08 69.4
47 TraesCS1B01G135600 chr1D 97.342 301 7 1 4824 5123 14435177 14435477 1.270000e-140 510.0
48 TraesCS1B01G135600 chr1D 97.342 301 7 1 4824 5123 90211262 90210962 1.270000e-140 510.0
49 TraesCS1B01G135600 chr1D 97.342 301 7 1 4824 5123 206731978 206731678 1.270000e-140 510.0
50 TraesCS1B01G135600 chr1D 79.798 99 15 4 3851 3947 57960559 57960654 3.310000e-07 67.6
51 TraesCS1B01G135600 chr6D 95.536 112 5 0 1 112 248874297 248874186 4.080000e-41 180.0
52 TraesCS1B01G135600 chr6D 94.643 112 6 0 1 112 36378453 36378342 1.900000e-39 174.0
53 TraesCS1B01G135600 chr6D 94.643 112 6 0 1 112 248124910 248125021 1.900000e-39 174.0
54 TraesCS1B01G135600 chr6D 95.455 66 3 0 2124 2189 69171516 69171451 7.020000e-19 106.0
55 TraesCS1B01G135600 chr5D 95.536 112 5 0 1 112 299644670 299644559 4.080000e-41 180.0
56 TraesCS1B01G135600 chr5D 78.704 108 19 4 3842 3947 478453773 478453878 9.200000e-08 69.4
57 TraesCS1B01G135600 chr2B 95.536 112 5 0 1 112 575004571 575004460 4.080000e-41 180.0
58 TraesCS1B01G135600 chr2B 98.969 97 1 0 4731 4827 233940344 233940440 1.900000e-39 174.0
59 TraesCS1B01G135600 chr6A 93.162 117 4 2 4714 4830 49973830 49973718 8.820000e-38 169.0
60 TraesCS1B01G135600 chr6B 92.241 116 6 3 4711 4823 204537348 204537463 1.480000e-35 161.0
61 TraesCS1B01G135600 chr4B 92.920 113 5 3 4714 4823 662577944 662577832 1.480000e-35 161.0
62 TraesCS1B01G135600 chr4B 83.721 86 12 2 3863 3947 15760511 15760427 4.250000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G135600 chr1B 172891474 172896596 5122 False 9461.000000 9461 100.0000 1 5123 1 chr1B.!!$F3 5122
1 TraesCS1B01G135600 chr1B 72075695 72077291 1596 False 2796.000000 2796 98.2500 3130 4728 1 chr1B.!!$F1 1598
2 TraesCS1B01G135600 chr1B 72065292 72067213 1921 False 1660.000000 2887 97.9065 1069 3134 2 chr1B.!!$F5 2065
3 TraesCS1B01G135600 chr1B 252587142 252587788 646 True 1050.000000 1050 96.4450 4195 4822 1 chr1B.!!$R1 627
4 TraesCS1B01G135600 chr5A 181399000 181403696 4696 True 4106.500000 8039 98.8075 190 4828 2 chr5A.!!$R1 4638
5 TraesCS1B01G135600 chr5B 14672383 14676970 4587 True 7986.000000 7986 98.0080 116 4728 1 chr5B.!!$R1 4612
6 TraesCS1B01G135600 chr5B 624694438 624699026 4588 True 7945.000000 7945 97.8350 113 4727 1 chr5B.!!$R2 4614
7 TraesCS1B01G135600 chr5B 628280481 628285447 4966 True 4045.000000 5842 98.0655 113 4728 2 chr5B.!!$R4 4615
8 TraesCS1B01G135600 chr7B 692601178 692604297 3119 False 5533.000000 5533 98.7180 1085 4197 1 chr7B.!!$F1 3112
9 TraesCS1B01G135600 chr7A 710787767 710791677 3910 False 3457.500000 5110 98.3985 113 4728 2 chr7A.!!$F4 4615
10 TraesCS1B01G135600 chr7A 669739613 669740583 970 True 1716.000000 1716 98.5580 113 1083 1 chr7A.!!$R1 970
11 TraesCS1B01G135600 chr7A 699291064 699294155 3091 False 985.333333 1258 85.5360 1085 4197 3 chr7A.!!$F3 3112
12 TraesCS1B01G135600 chr3A 625557055 625561463 4408 True 3909.000000 4427 98.6730 113 4728 2 chr3A.!!$R1 4615
13 TraesCS1B01G135600 chr7D 607045007 607048289 3282 True 1899.000000 2296 89.6305 1085 4197 2 chr7D.!!$R2 3112
14 TraesCS1B01G135600 chr7D 561633808 561634324 516 True 606.000000 606 87.7320 1086 1620 1 chr7D.!!$R1 534
15 TraesCS1B01G135600 chr1A 8618406 8619376 970 False 1711.000000 1711 98.4550 113 1083 1 chr1A.!!$F1 970
16 TraesCS1B01G135600 chr2A 626130313 626131282 969 False 1709.000000 1709 98.4550 113 1083 1 chr2A.!!$F1 970
17 TraesCS1B01G135600 chrUn 55071527 55072061 534 False 970.000000 970 99.4390 4195 4728 1 chrUn.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.385029 TGCGTTTGAGCTGTGCATTT 59.615 45.000 0.00 0.00 38.13 2.32 F
85 86 0.780002 GCGTTTGAGCTGTGCATTTG 59.220 50.000 0.00 0.00 0.00 2.32 F
107 108 1.282157 AGATGGGTGTGGGAGTTAAGC 59.718 52.381 0.00 0.00 0.00 3.09 F
1657 2023 0.107165 TGCGTGCTCTAGGCTCTAGA 60.107 55.000 10.38 10.38 40.72 2.43 F
1701 2067 2.345244 CAAGCGCCTCACCTCTGT 59.655 61.111 2.29 0.00 0.00 3.41 F
2578 3315 2.653726 ACCATGCAACTGAACTGACAA 58.346 42.857 0.00 0.00 0.00 3.18 F
3903 4713 2.827642 GATGGGGCTGCAGCTGAC 60.828 66.667 35.82 25.36 41.70 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1027 1028 0.764752 GGACGGGAGGGGAGATGAAT 60.765 60.000 0.00 0.0 0.00 2.57 R
1657 2023 3.953612 TGAGGAAACAAAGTTGCTCACAT 59.046 39.130 5.20 0.0 46.97 3.21 R
1701 2067 4.079253 GGGGTTTGCTTTTGTCTCTATCA 58.921 43.478 0.00 0.0 0.00 2.15 R
3538 4333 1.284198 AGCTGACAGAATGGAAGGCAT 59.716 47.619 6.65 0.0 43.62 4.40 R
3903 4713 1.872952 TGAACCAGTTGTTGATCTGCG 59.127 47.619 0.00 0.0 37.29 5.18 R
3939 4749 1.529244 GGGTTGCTGTGCCAGTTCT 60.529 57.895 4.45 0.0 33.43 3.01 R
4834 5732 0.032416 TACTACTCTGGACCCAGGCC 60.032 60.000 15.43 0.0 43.75 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.596904 GGCAACTTAGCTATCCGTGA 57.403 50.000 0.00 0.00 34.17 4.35
30 31 3.113260 GGCAACTTAGCTATCCGTGAT 57.887 47.619 0.00 0.00 34.17 3.06
31 32 2.802816 GGCAACTTAGCTATCCGTGATG 59.197 50.000 0.00 0.00 34.17 3.07
32 33 2.802816 GCAACTTAGCTATCCGTGATGG 59.197 50.000 0.00 0.00 40.09 3.51
33 34 6.539551 GGCAACTTAGCTATCCGTGATGGA 62.540 50.000 0.00 0.00 42.57 3.41
43 44 3.646736 TCCGTGATGGACTCTCTAGAA 57.353 47.619 0.00 0.00 43.74 2.10
44 45 4.171878 TCCGTGATGGACTCTCTAGAAT 57.828 45.455 0.00 0.00 43.74 2.40
45 46 3.885901 TCCGTGATGGACTCTCTAGAATG 59.114 47.826 0.00 0.00 43.74 2.67
46 47 3.551863 CCGTGATGGACTCTCTAGAATGC 60.552 52.174 0.00 0.00 42.00 3.56
47 48 3.551863 CGTGATGGACTCTCTAGAATGCC 60.552 52.174 0.00 0.00 0.00 4.40
48 49 3.386078 GTGATGGACTCTCTAGAATGCCA 59.614 47.826 0.00 0.00 0.00 4.92
49 50 4.040217 GTGATGGACTCTCTAGAATGCCAT 59.960 45.833 13.07 13.07 37.36 4.40
50 51 4.282957 TGATGGACTCTCTAGAATGCCATC 59.717 45.833 23.51 23.51 46.45 3.51
51 52 3.646534 TGGACTCTCTAGAATGCCATCA 58.353 45.455 0.00 0.00 0.00 3.07
52 53 4.229639 TGGACTCTCTAGAATGCCATCAT 58.770 43.478 0.00 0.00 33.53 2.45
53 54 4.657504 TGGACTCTCTAGAATGCCATCATT 59.342 41.667 0.00 0.00 45.04 2.57
54 55 5.840693 TGGACTCTCTAGAATGCCATCATTA 59.159 40.000 0.00 0.00 42.60 1.90
55 56 6.499699 TGGACTCTCTAGAATGCCATCATTAT 59.500 38.462 0.00 0.00 42.60 1.28
56 57 7.016957 TGGACTCTCTAGAATGCCATCATTATT 59.983 37.037 0.00 0.00 42.60 1.40
57 58 7.882271 GGACTCTCTAGAATGCCATCATTATTT 59.118 37.037 0.00 0.00 42.60 1.40
58 59 9.935241 GACTCTCTAGAATGCCATCATTATTTA 57.065 33.333 0.00 0.00 42.60 1.40
67 68 9.947669 GAATGCCATCATTATTTATCTCTATGC 57.052 33.333 0.00 0.00 42.60 3.14
68 69 7.543947 TGCCATCATTATTTATCTCTATGCG 57.456 36.000 0.00 0.00 0.00 4.73
69 70 7.105588 TGCCATCATTATTTATCTCTATGCGT 58.894 34.615 0.00 0.00 0.00 5.24
70 71 7.607607 TGCCATCATTATTTATCTCTATGCGTT 59.392 33.333 0.00 0.00 0.00 4.84
71 72 8.454106 GCCATCATTATTTATCTCTATGCGTTT 58.546 33.333 0.00 0.00 0.00 3.60
72 73 9.764870 CCATCATTATTTATCTCTATGCGTTTG 57.235 33.333 0.00 0.00 0.00 2.93
75 76 8.712363 TCATTATTTATCTCTATGCGTTTGAGC 58.288 33.333 4.36 0.00 37.71 4.26
76 77 8.715998 CATTATTTATCTCTATGCGTTTGAGCT 58.284 33.333 0.00 0.00 38.13 4.09
77 78 5.973651 TTTATCTCTATGCGTTTGAGCTG 57.026 39.130 0.00 0.00 38.13 4.24
78 79 3.533606 ATCTCTATGCGTTTGAGCTGT 57.466 42.857 0.00 0.00 38.13 4.40
79 80 2.610433 TCTCTATGCGTTTGAGCTGTG 58.390 47.619 0.00 0.00 38.13 3.66
80 81 1.061711 CTCTATGCGTTTGAGCTGTGC 59.938 52.381 0.00 0.00 38.13 4.57
81 82 0.798159 CTATGCGTTTGAGCTGTGCA 59.202 50.000 0.00 0.00 40.23 4.57
82 83 1.399440 CTATGCGTTTGAGCTGTGCAT 59.601 47.619 0.00 1.65 46.94 3.96
83 84 0.599558 ATGCGTTTGAGCTGTGCATT 59.400 45.000 0.00 0.00 43.24 3.56
84 85 0.385029 TGCGTTTGAGCTGTGCATTT 59.615 45.000 0.00 0.00 38.13 2.32
85 86 0.780002 GCGTTTGAGCTGTGCATTTG 59.220 50.000 0.00 0.00 0.00 2.32
86 87 1.865248 GCGTTTGAGCTGTGCATTTGT 60.865 47.619 0.00 0.00 0.00 2.83
87 88 2.604373 GCGTTTGAGCTGTGCATTTGTA 60.604 45.455 0.00 0.00 0.00 2.41
88 89 3.228749 CGTTTGAGCTGTGCATTTGTAG 58.771 45.455 0.00 0.00 0.00 2.74
89 90 3.058983 CGTTTGAGCTGTGCATTTGTAGA 60.059 43.478 0.00 0.00 0.00 2.59
90 91 4.378770 CGTTTGAGCTGTGCATTTGTAGAT 60.379 41.667 0.00 0.00 0.00 1.98
91 92 4.690184 TTGAGCTGTGCATTTGTAGATG 57.310 40.909 0.00 0.00 0.00 2.90
92 93 3.011818 TGAGCTGTGCATTTGTAGATGG 58.988 45.455 0.00 0.00 0.00 3.51
93 94 2.357009 GAGCTGTGCATTTGTAGATGGG 59.643 50.000 0.00 0.00 0.00 4.00
94 95 2.094675 GCTGTGCATTTGTAGATGGGT 58.905 47.619 0.00 0.00 0.00 4.51
95 96 2.159338 GCTGTGCATTTGTAGATGGGTG 60.159 50.000 0.00 0.00 0.00 4.61
96 97 3.084039 CTGTGCATTTGTAGATGGGTGT 58.916 45.455 0.00 0.00 0.00 4.16
97 98 2.819019 TGTGCATTTGTAGATGGGTGTG 59.181 45.455 0.00 0.00 0.00 3.82
98 99 2.164219 GTGCATTTGTAGATGGGTGTGG 59.836 50.000 0.00 0.00 0.00 4.17
99 100 1.750778 GCATTTGTAGATGGGTGTGGG 59.249 52.381 0.00 0.00 0.00 4.61
100 101 2.620367 GCATTTGTAGATGGGTGTGGGA 60.620 50.000 0.00 0.00 0.00 4.37
101 102 3.282021 CATTTGTAGATGGGTGTGGGAG 58.718 50.000 0.00 0.00 0.00 4.30
102 103 2.038863 TTGTAGATGGGTGTGGGAGT 57.961 50.000 0.00 0.00 0.00 3.85
103 104 2.038863 TGTAGATGGGTGTGGGAGTT 57.961 50.000 0.00 0.00 0.00 3.01
104 105 3.193395 TGTAGATGGGTGTGGGAGTTA 57.807 47.619 0.00 0.00 0.00 2.24
105 106 3.522759 TGTAGATGGGTGTGGGAGTTAA 58.477 45.455 0.00 0.00 0.00 2.01
106 107 3.517901 TGTAGATGGGTGTGGGAGTTAAG 59.482 47.826 0.00 0.00 0.00 1.85
107 108 1.282157 AGATGGGTGTGGGAGTTAAGC 59.718 52.381 0.00 0.00 0.00 3.09
108 109 1.282157 GATGGGTGTGGGAGTTAAGCT 59.718 52.381 0.00 0.00 0.00 3.74
109 110 2.032965 TGGGTGTGGGAGTTAAGCTA 57.967 50.000 0.00 0.00 0.00 3.32
110 111 1.906574 TGGGTGTGGGAGTTAAGCTAG 59.093 52.381 0.00 0.00 0.00 3.42
111 112 1.907255 GGGTGTGGGAGTTAAGCTAGT 59.093 52.381 0.00 0.00 0.00 2.57
516 517 4.379243 CGGCTCTGACCCAACGCT 62.379 66.667 0.00 0.00 0.00 5.07
550 551 1.667154 CTTCCGCATCACCTCTCCGA 61.667 60.000 0.00 0.00 0.00 4.55
837 838 4.854924 CCACGGCGCATCATCCCA 62.855 66.667 10.83 0.00 0.00 4.37
875 876 2.532532 CCATCCATCCAGGGCCGAT 61.533 63.158 0.00 0.00 38.24 4.18
1083 1084 4.415150 GTGCAGGGCAGGCTGCTA 62.415 66.667 35.73 16.29 45.87 3.49
1098 1099 2.503061 CTACTGCTGGAGGCGCAT 59.497 61.111 10.83 0.00 45.43 4.73
1111 1112 4.827087 CGCATGTCGCCTGCCTCT 62.827 66.667 0.00 0.00 36.24 3.69
1347 1354 9.967346 GCTCTATGTTATGTGTAGTAGATTGAA 57.033 33.333 0.00 0.00 0.00 2.69
1657 2023 0.107165 TGCGTGCTCTAGGCTCTAGA 60.107 55.000 10.38 10.38 40.72 2.43
1701 2067 2.345244 CAAGCGCCTCACCTCTGT 59.655 61.111 2.29 0.00 0.00 3.41
1728 2094 3.605634 AGACAAAAGCAAACCCCAAAAC 58.394 40.909 0.00 0.00 0.00 2.43
1749 2115 4.595986 ACACAACTACAAGTGTCCCTTTT 58.404 39.130 0.00 0.00 45.16 2.27
2347 2990 4.688511 TTTTCCTGTATTATTGCGCGTT 57.311 36.364 8.43 0.00 0.00 4.84
2578 3315 2.653726 ACCATGCAACTGAACTGACAA 58.346 42.857 0.00 0.00 0.00 3.18
3538 4333 5.603596 TGAGCTTAAACAGGTAAAACTCGA 58.396 37.500 0.00 0.00 31.44 4.04
3888 4698 4.479993 GCGGCTGGTGCAGGAGAT 62.480 66.667 0.00 0.00 41.91 2.75
3903 4713 2.827642 GATGGGGCTGCAGCTGAC 60.828 66.667 35.82 25.36 41.70 3.51
4283 5116 9.897744 CATACAATATTCACACCATGTAATTCC 57.102 33.333 0.00 0.00 0.00 3.01
4652 5491 5.657474 CGCACCTTCCTTTATTACTAGTGA 58.343 41.667 5.39 0.00 0.00 3.41
4728 5567 2.536761 TGGTATACTAATGGCGCACC 57.463 50.000 10.83 5.12 0.00 5.01
4729 5568 2.043992 TGGTATACTAATGGCGCACCT 58.956 47.619 10.83 0.00 36.63 4.00
4824 5722 6.854091 AGTAGGGGTTTTTCTAGTAGTGAG 57.146 41.667 0.00 0.00 0.00 3.51
4825 5723 6.321321 AGTAGGGGTTTTTCTAGTAGTGAGT 58.679 40.000 0.00 0.00 0.00 3.41
4826 5724 7.473593 AGTAGGGGTTTTTCTAGTAGTGAGTA 58.526 38.462 0.00 0.00 0.00 2.59
4827 5725 6.854091 AGGGGTTTTTCTAGTAGTGAGTAG 57.146 41.667 0.00 0.00 0.00 2.57
4828 5726 5.720520 AGGGGTTTTTCTAGTAGTGAGTAGG 59.279 44.000 0.00 0.00 30.49 3.18
4829 5727 5.105023 GGGGTTTTTCTAGTAGTGAGTAGGG 60.105 48.000 0.00 0.00 30.49 3.53
4830 5728 5.417811 GGTTTTTCTAGTAGTGAGTAGGGC 58.582 45.833 0.00 0.00 30.49 5.19
4831 5729 5.046807 GGTTTTTCTAGTAGTGAGTAGGGCA 60.047 44.000 0.00 0.00 30.49 5.36
4832 5730 5.916661 TTTTCTAGTAGTGAGTAGGGCAG 57.083 43.478 0.00 0.00 30.49 4.85
4833 5731 4.587976 TTCTAGTAGTGAGTAGGGCAGT 57.412 45.455 0.00 0.00 30.49 4.40
4834 5732 3.887352 TCTAGTAGTGAGTAGGGCAGTG 58.113 50.000 0.00 0.00 30.49 3.66
4835 5733 1.853963 AGTAGTGAGTAGGGCAGTGG 58.146 55.000 0.00 0.00 0.00 4.00
4836 5734 0.175989 GTAGTGAGTAGGGCAGTGGC 59.824 60.000 8.47 8.47 40.13 5.01
4846 5744 4.729918 GCAGTGGCCTGGGTCCAG 62.730 72.222 3.32 9.94 43.26 3.86
4847 5745 2.930019 CAGTGGCCTGGGTCCAGA 60.930 66.667 17.91 0.00 46.30 3.86
4848 5746 2.608988 AGTGGCCTGGGTCCAGAG 60.609 66.667 17.91 9.33 46.30 3.35
4849 5747 2.930562 GTGGCCTGGGTCCAGAGT 60.931 66.667 17.91 0.00 46.30 3.24
4850 5748 1.612442 GTGGCCTGGGTCCAGAGTA 60.612 63.158 17.91 1.42 46.30 2.59
4851 5749 1.306141 TGGCCTGGGTCCAGAGTAG 60.306 63.158 17.91 2.95 46.30 2.57
4852 5750 1.306226 GGCCTGGGTCCAGAGTAGT 60.306 63.158 17.91 0.00 46.30 2.73
4853 5751 0.032416 GGCCTGGGTCCAGAGTAGTA 60.032 60.000 17.91 0.00 46.30 1.82
4854 5752 1.404843 GCCTGGGTCCAGAGTAGTAG 58.595 60.000 17.91 1.25 46.30 2.57
4855 5753 1.063867 GCCTGGGTCCAGAGTAGTAGA 60.064 57.143 17.91 0.00 46.30 2.59
4856 5754 2.623502 GCCTGGGTCCAGAGTAGTAGAA 60.624 54.545 17.91 0.00 46.30 2.10
4857 5755 3.292460 CCTGGGTCCAGAGTAGTAGAAG 58.708 54.545 17.91 0.00 46.30 2.85
4858 5756 3.309265 CCTGGGTCCAGAGTAGTAGAAGT 60.309 52.174 17.91 0.00 46.30 3.01
4859 5757 4.079901 CCTGGGTCCAGAGTAGTAGAAGTA 60.080 50.000 17.91 0.00 46.30 2.24
4860 5758 5.113446 TGGGTCCAGAGTAGTAGAAGTAG 57.887 47.826 0.00 0.00 0.00 2.57
4861 5759 3.884693 GGGTCCAGAGTAGTAGAAGTAGC 59.115 52.174 0.00 0.00 0.00 3.58
4862 5760 4.525024 GGTCCAGAGTAGTAGAAGTAGCA 58.475 47.826 0.00 0.00 0.00 3.49
4863 5761 4.336153 GGTCCAGAGTAGTAGAAGTAGCAC 59.664 50.000 0.00 0.00 0.00 4.40
4864 5762 4.336153 GTCCAGAGTAGTAGAAGTAGCACC 59.664 50.000 0.00 0.00 0.00 5.01
4865 5763 4.018688 TCCAGAGTAGTAGAAGTAGCACCA 60.019 45.833 0.00 0.00 0.00 4.17
4866 5764 4.705507 CCAGAGTAGTAGAAGTAGCACCAA 59.294 45.833 0.00 0.00 0.00 3.67
4867 5765 5.185249 CCAGAGTAGTAGAAGTAGCACCAAA 59.815 44.000 0.00 0.00 0.00 3.28
4868 5766 6.295123 CCAGAGTAGTAGAAGTAGCACCAAAA 60.295 42.308 0.00 0.00 0.00 2.44
4869 5767 6.586844 CAGAGTAGTAGAAGTAGCACCAAAAC 59.413 42.308 0.00 0.00 0.00 2.43
4870 5768 6.267014 AGAGTAGTAGAAGTAGCACCAAAACA 59.733 38.462 0.00 0.00 0.00 2.83
4871 5769 7.005709 AGTAGTAGAAGTAGCACCAAAACAT 57.994 36.000 0.00 0.00 0.00 2.71
4872 5770 7.450903 AGTAGTAGAAGTAGCACCAAAACATT 58.549 34.615 0.00 0.00 0.00 2.71
4873 5771 7.937394 AGTAGTAGAAGTAGCACCAAAACATTT 59.063 33.333 0.00 0.00 0.00 2.32
4874 5772 7.582667 AGTAGAAGTAGCACCAAAACATTTT 57.417 32.000 0.00 0.00 0.00 1.82
4875 5773 8.007405 AGTAGAAGTAGCACCAAAACATTTTT 57.993 30.769 0.00 0.00 0.00 1.94
4896 5794 5.751243 TTTGAGTGTAGACTTTTCCTTGC 57.249 39.130 0.00 0.00 30.16 4.01
4897 5795 4.689612 TGAGTGTAGACTTTTCCTTGCT 57.310 40.909 0.00 0.00 30.16 3.91
4898 5796 4.632153 TGAGTGTAGACTTTTCCTTGCTC 58.368 43.478 0.00 0.00 30.16 4.26
4899 5797 4.100963 TGAGTGTAGACTTTTCCTTGCTCA 59.899 41.667 0.00 0.00 30.16 4.26
4900 5798 5.036117 AGTGTAGACTTTTCCTTGCTCAA 57.964 39.130 0.00 0.00 0.00 3.02
4901 5799 5.059833 AGTGTAGACTTTTCCTTGCTCAAG 58.940 41.667 2.74 2.74 38.14 3.02
4902 5800 3.815401 TGTAGACTTTTCCTTGCTCAAGC 59.185 43.478 4.17 0.00 42.50 4.01
4903 5801 2.234143 AGACTTTTCCTTGCTCAAGCC 58.766 47.619 4.17 0.00 41.18 4.35
4904 5802 2.158549 AGACTTTTCCTTGCTCAAGCCT 60.159 45.455 4.17 0.00 41.18 4.58
4905 5803 1.959282 ACTTTTCCTTGCTCAAGCCTG 59.041 47.619 4.17 0.00 41.18 4.85
4906 5804 0.675633 TTTTCCTTGCTCAAGCCTGC 59.324 50.000 4.17 0.00 41.18 4.85
4907 5805 1.181098 TTTCCTTGCTCAAGCCTGCC 61.181 55.000 4.17 0.00 41.18 4.85
4908 5806 2.035312 CCTTGCTCAAGCCTGCCT 59.965 61.111 4.17 0.00 41.18 4.75
4909 5807 1.200760 TCCTTGCTCAAGCCTGCCTA 61.201 55.000 4.17 0.00 41.18 3.93
4910 5808 1.028868 CCTTGCTCAAGCCTGCCTAC 61.029 60.000 4.17 0.00 41.18 3.18
4911 5809 0.035630 CTTGCTCAAGCCTGCCTACT 60.036 55.000 0.00 0.00 41.18 2.57
4912 5810 1.208052 CTTGCTCAAGCCTGCCTACTA 59.792 52.381 0.00 0.00 41.18 1.82
4913 5811 0.826715 TGCTCAAGCCTGCCTACTAG 59.173 55.000 0.00 0.00 41.18 2.57
4914 5812 1.115467 GCTCAAGCCTGCCTACTAGA 58.885 55.000 0.00 0.00 34.31 2.43
4915 5813 1.482593 GCTCAAGCCTGCCTACTAGAA 59.517 52.381 0.00 0.00 34.31 2.10
4916 5814 2.103941 GCTCAAGCCTGCCTACTAGAAT 59.896 50.000 0.00 0.00 34.31 2.40
4917 5815 3.801983 GCTCAAGCCTGCCTACTAGAATC 60.802 52.174 0.00 0.00 34.31 2.52
4918 5816 2.362397 TCAAGCCTGCCTACTAGAATCG 59.638 50.000 0.00 0.00 0.00 3.34
4919 5817 0.676736 AGCCTGCCTACTAGAATCGC 59.323 55.000 0.00 0.00 0.00 4.58
4920 5818 0.319986 GCCTGCCTACTAGAATCGCC 60.320 60.000 0.00 0.00 0.00 5.54
4921 5819 1.040646 CCTGCCTACTAGAATCGCCA 58.959 55.000 0.00 0.00 0.00 5.69
4922 5820 1.000283 CCTGCCTACTAGAATCGCCAG 60.000 57.143 0.00 0.00 0.00 4.85
4923 5821 1.683917 CTGCCTACTAGAATCGCCAGT 59.316 52.381 0.00 0.00 0.00 4.00
4924 5822 1.409064 TGCCTACTAGAATCGCCAGTG 59.591 52.381 0.00 0.00 0.00 3.66
4925 5823 1.870167 GCCTACTAGAATCGCCAGTGC 60.870 57.143 0.00 0.00 0.00 4.40
4926 5824 1.683917 CCTACTAGAATCGCCAGTGCT 59.316 52.381 0.00 0.00 34.43 4.40
4927 5825 2.101582 CCTACTAGAATCGCCAGTGCTT 59.898 50.000 0.00 0.00 34.43 3.91
4928 5826 2.015736 ACTAGAATCGCCAGTGCTTG 57.984 50.000 0.00 0.00 34.43 4.01
4929 5827 1.550524 ACTAGAATCGCCAGTGCTTGA 59.449 47.619 0.00 0.00 34.43 3.02
4930 5828 2.028112 ACTAGAATCGCCAGTGCTTGAA 60.028 45.455 0.00 0.00 34.43 2.69
4931 5829 1.896220 AGAATCGCCAGTGCTTGAAA 58.104 45.000 0.00 0.00 34.43 2.69
4932 5830 1.808945 AGAATCGCCAGTGCTTGAAAG 59.191 47.619 0.00 0.00 34.43 2.62
4933 5831 0.883833 AATCGCCAGTGCTTGAAAGG 59.116 50.000 0.00 0.00 34.43 3.11
4934 5832 0.036732 ATCGCCAGTGCTTGAAAGGA 59.963 50.000 0.00 0.00 34.43 3.36
4935 5833 0.179032 TCGCCAGTGCTTGAAAGGAA 60.179 50.000 0.00 0.00 34.43 3.36
4936 5834 0.667993 CGCCAGTGCTTGAAAGGAAA 59.332 50.000 0.00 0.00 34.43 3.13
4937 5835 1.066908 CGCCAGTGCTTGAAAGGAAAA 59.933 47.619 0.00 0.00 34.43 2.29
4938 5836 2.747436 GCCAGTGCTTGAAAGGAAAAG 58.253 47.619 0.00 0.00 33.53 2.27
4939 5837 2.101415 GCCAGTGCTTGAAAGGAAAAGT 59.899 45.455 0.00 0.00 33.53 2.66
4940 5838 3.709987 CCAGTGCTTGAAAGGAAAAGTG 58.290 45.455 0.00 0.00 0.00 3.16
4941 5839 3.381272 CCAGTGCTTGAAAGGAAAAGTGA 59.619 43.478 0.00 0.00 0.00 3.41
4942 5840 4.142182 CCAGTGCTTGAAAGGAAAAGTGAA 60.142 41.667 0.00 0.00 0.00 3.18
4943 5841 5.039333 CAGTGCTTGAAAGGAAAAGTGAAG 58.961 41.667 0.00 0.00 0.00 3.02
4944 5842 4.949856 AGTGCTTGAAAGGAAAAGTGAAGA 59.050 37.500 0.00 0.00 0.00 2.87
4945 5843 5.418840 AGTGCTTGAAAGGAAAAGTGAAGAA 59.581 36.000 0.00 0.00 0.00 2.52
4946 5844 6.097412 AGTGCTTGAAAGGAAAAGTGAAGAAT 59.903 34.615 0.00 0.00 0.00 2.40
4947 5845 7.285401 AGTGCTTGAAAGGAAAAGTGAAGAATA 59.715 33.333 0.00 0.00 0.00 1.75
4948 5846 7.920682 GTGCTTGAAAGGAAAAGTGAAGAATAA 59.079 33.333 0.00 0.00 0.00 1.40
4949 5847 7.920682 TGCTTGAAAGGAAAAGTGAAGAATAAC 59.079 33.333 0.00 0.00 0.00 1.89
4950 5848 7.920682 GCTTGAAAGGAAAAGTGAAGAATAACA 59.079 33.333 0.00 0.00 0.00 2.41
4951 5849 9.971922 CTTGAAAGGAAAAGTGAAGAATAACAT 57.028 29.630 0.00 0.00 0.00 2.71
4955 5853 9.807921 AAAGGAAAAGTGAAGAATAACATAGGA 57.192 29.630 0.00 0.00 0.00 2.94
4956 5854 9.807921 AAGGAAAAGTGAAGAATAACATAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
4957 5855 9.981460 AGGAAAAGTGAAGAATAACATAGGAAT 57.019 29.630 0.00 0.00 0.00 3.01
4961 5859 9.753674 AAAGTGAAGAATAACATAGGAATTGGA 57.246 29.630 0.00 0.00 0.00 3.53
4962 5860 9.753674 AAGTGAAGAATAACATAGGAATTGGAA 57.246 29.630 0.00 0.00 0.00 3.53
4963 5861 9.753674 AGTGAAGAATAACATAGGAATTGGAAA 57.246 29.630 0.00 0.00 0.00 3.13
4965 5863 9.753674 TGAAGAATAACATAGGAATTGGAAAGT 57.246 29.630 0.00 0.00 0.00 2.66
4985 5883 9.761504 GGAAAGTTTCCTATGGTACTACTATTC 57.238 37.037 24.79 0.00 46.57 1.75
4989 5887 8.368668 AGTTTCCTATGGTACTACTATTCATGC 58.631 37.037 0.00 0.00 0.00 4.06
4990 5888 7.849322 TTCCTATGGTACTACTATTCATGCA 57.151 36.000 0.00 0.00 0.00 3.96
4991 5889 8.435931 TTCCTATGGTACTACTATTCATGCAT 57.564 34.615 0.00 0.00 0.00 3.96
4992 5890 8.435931 TCCTATGGTACTACTATTCATGCATT 57.564 34.615 0.00 0.00 0.00 3.56
4993 5891 8.880244 TCCTATGGTACTACTATTCATGCATTT 58.120 33.333 0.00 0.00 0.00 2.32
4994 5892 8.939929 CCTATGGTACTACTATTCATGCATTTG 58.060 37.037 0.00 0.00 0.00 2.32
4995 5893 7.750229 ATGGTACTACTATTCATGCATTTGG 57.250 36.000 0.00 0.00 0.00 3.28
4996 5894 6.658849 TGGTACTACTATTCATGCATTTGGT 58.341 36.000 0.00 0.00 0.00 3.67
4997 5895 7.116075 TGGTACTACTATTCATGCATTTGGTT 58.884 34.615 0.00 0.00 0.00 3.67
4998 5896 7.282224 TGGTACTACTATTCATGCATTTGGTTC 59.718 37.037 0.00 0.00 0.00 3.62
4999 5897 7.282224 GGTACTACTATTCATGCATTTGGTTCA 59.718 37.037 0.00 0.00 0.00 3.18
5000 5898 7.701539 ACTACTATTCATGCATTTGGTTCAA 57.298 32.000 0.00 0.00 0.00 2.69
5001 5899 8.121305 ACTACTATTCATGCATTTGGTTCAAA 57.879 30.769 0.00 0.00 37.75 2.69
5002 5900 8.246180 ACTACTATTCATGCATTTGGTTCAAAG 58.754 33.333 0.00 0.00 36.76 2.77
5003 5901 6.400568 ACTATTCATGCATTTGGTTCAAAGG 58.599 36.000 0.00 1.33 36.76 3.11
5004 5902 4.952071 TTCATGCATTTGGTTCAAAGGA 57.048 36.364 0.00 0.00 37.32 3.36
5005 5903 4.952071 TCATGCATTTGGTTCAAAGGAA 57.048 36.364 0.00 0.00 37.32 3.36
5006 5904 5.486735 TCATGCATTTGGTTCAAAGGAAT 57.513 34.783 0.00 1.55 37.32 3.01
5007 5905 5.239351 TCATGCATTTGGTTCAAAGGAATG 58.761 37.500 15.77 15.77 46.38 2.67
5008 5906 4.005487 TGCATTTGGTTCAAAGGAATGG 57.995 40.909 8.87 0.00 37.32 3.16
5009 5907 3.645212 TGCATTTGGTTCAAAGGAATGGA 59.355 39.130 8.87 0.00 37.32 3.41
5010 5908 4.248058 GCATTTGGTTCAAAGGAATGGAG 58.752 43.478 8.87 0.00 37.32 3.86
5011 5909 4.248058 CATTTGGTTCAAAGGAATGGAGC 58.752 43.478 0.00 0.00 37.32 4.70
5012 5910 2.673775 TGGTTCAAAGGAATGGAGCA 57.326 45.000 0.00 0.00 34.02 4.26
5013 5911 2.956132 TGGTTCAAAGGAATGGAGCAA 58.044 42.857 0.00 0.00 33.51 3.91
5014 5912 3.303938 TGGTTCAAAGGAATGGAGCAAA 58.696 40.909 0.00 0.00 33.51 3.68
5015 5913 3.321682 TGGTTCAAAGGAATGGAGCAAAG 59.678 43.478 0.00 0.00 33.51 2.77
5016 5914 3.306294 GGTTCAAAGGAATGGAGCAAAGG 60.306 47.826 0.00 0.00 35.05 3.11
5017 5915 3.524095 TCAAAGGAATGGAGCAAAGGA 57.476 42.857 0.00 0.00 0.00 3.36
5018 5916 3.843422 TCAAAGGAATGGAGCAAAGGAA 58.157 40.909 0.00 0.00 0.00 3.36
5019 5917 4.222336 TCAAAGGAATGGAGCAAAGGAAA 58.778 39.130 0.00 0.00 0.00 3.13
5020 5918 4.653341 TCAAAGGAATGGAGCAAAGGAAAA 59.347 37.500 0.00 0.00 0.00 2.29
5021 5919 4.607293 AAGGAATGGAGCAAAGGAAAAC 57.393 40.909 0.00 0.00 0.00 2.43
5022 5920 3.849527 AGGAATGGAGCAAAGGAAAACT 58.150 40.909 0.00 0.00 0.00 2.66
5023 5921 3.575687 AGGAATGGAGCAAAGGAAAACTG 59.424 43.478 0.00 0.00 0.00 3.16
5024 5922 3.321968 GGAATGGAGCAAAGGAAAACTGT 59.678 43.478 0.00 0.00 0.00 3.55
5025 5923 4.522789 GGAATGGAGCAAAGGAAAACTGTA 59.477 41.667 0.00 0.00 0.00 2.74
5026 5924 5.335976 GGAATGGAGCAAAGGAAAACTGTAG 60.336 44.000 0.00 0.00 0.00 2.74
5027 5925 3.486383 TGGAGCAAAGGAAAACTGTAGG 58.514 45.455 0.00 0.00 0.00 3.18
5028 5926 3.137544 TGGAGCAAAGGAAAACTGTAGGA 59.862 43.478 0.00 0.00 0.00 2.94
5029 5927 4.202567 TGGAGCAAAGGAAAACTGTAGGAT 60.203 41.667 0.00 0.00 0.00 3.24
5030 5928 4.767409 GGAGCAAAGGAAAACTGTAGGATT 59.233 41.667 0.00 0.00 0.00 3.01
5031 5929 5.243954 GGAGCAAAGGAAAACTGTAGGATTT 59.756 40.000 0.00 0.00 0.00 2.17
5032 5930 6.089249 AGCAAAGGAAAACTGTAGGATTTG 57.911 37.500 0.00 0.00 0.00 2.32
5033 5931 5.598417 AGCAAAGGAAAACTGTAGGATTTGT 59.402 36.000 0.00 0.00 0.00 2.83
5034 5932 6.098266 AGCAAAGGAAAACTGTAGGATTTGTT 59.902 34.615 0.00 0.00 0.00 2.83
5035 5933 6.420903 GCAAAGGAAAACTGTAGGATTTGTTC 59.579 38.462 0.00 0.00 0.00 3.18
5036 5934 6.650427 AAGGAAAACTGTAGGATTTGTTCC 57.350 37.500 0.00 0.00 45.85 3.62
5048 5946 5.881777 GGATTTGTTCCTTTAGTGTCTCC 57.118 43.478 0.00 0.00 41.78 3.71
5049 5947 5.561679 GGATTTGTTCCTTTAGTGTCTCCT 58.438 41.667 0.00 0.00 41.78 3.69
5050 5948 6.004574 GGATTTGTTCCTTTAGTGTCTCCTT 58.995 40.000 0.00 0.00 41.78 3.36
5051 5949 6.072452 GGATTTGTTCCTTTAGTGTCTCCTTG 60.072 42.308 0.00 0.00 41.78 3.61
5052 5950 5.623956 TTGTTCCTTTAGTGTCTCCTTGA 57.376 39.130 0.00 0.00 0.00 3.02
5053 5951 5.623956 TGTTCCTTTAGTGTCTCCTTGAA 57.376 39.130 0.00 0.00 0.00 2.69
5054 5952 5.996644 TGTTCCTTTAGTGTCTCCTTGAAA 58.003 37.500 0.00 0.00 0.00 2.69
5055 5953 6.055588 TGTTCCTTTAGTGTCTCCTTGAAAG 58.944 40.000 0.00 0.00 0.00 2.62
5056 5954 6.126883 TGTTCCTTTAGTGTCTCCTTGAAAGA 60.127 38.462 0.00 0.00 0.00 2.52
5057 5955 6.494666 TCCTTTAGTGTCTCCTTGAAAGAA 57.505 37.500 0.00 0.00 0.00 2.52
5058 5956 6.895782 TCCTTTAGTGTCTCCTTGAAAGAAA 58.104 36.000 0.00 0.00 0.00 2.52
5059 5957 7.343357 TCCTTTAGTGTCTCCTTGAAAGAAAA 58.657 34.615 0.00 0.00 0.00 2.29
5060 5958 7.832187 TCCTTTAGTGTCTCCTTGAAAGAAAAA 59.168 33.333 0.00 0.00 0.00 1.94
5061 5959 7.915923 CCTTTAGTGTCTCCTTGAAAGAAAAAC 59.084 37.037 0.00 0.00 0.00 2.43
5062 5960 5.836821 AGTGTCTCCTTGAAAGAAAAACC 57.163 39.130 0.00 0.00 0.00 3.27
5063 5961 5.261216 AGTGTCTCCTTGAAAGAAAAACCA 58.739 37.500 0.00 0.00 0.00 3.67
5064 5962 5.893824 AGTGTCTCCTTGAAAGAAAAACCAT 59.106 36.000 0.00 0.00 0.00 3.55
5065 5963 7.060421 AGTGTCTCCTTGAAAGAAAAACCATA 58.940 34.615 0.00 0.00 0.00 2.74
5066 5964 7.229506 AGTGTCTCCTTGAAAGAAAAACCATAG 59.770 37.037 0.00 0.00 0.00 2.23
5067 5965 6.490040 TGTCTCCTTGAAAGAAAAACCATAGG 59.510 38.462 0.00 0.00 0.00 2.57
5068 5966 6.715264 GTCTCCTTGAAAGAAAAACCATAGGA 59.285 38.462 0.00 0.00 0.00 2.94
5069 5967 7.230712 GTCTCCTTGAAAGAAAAACCATAGGAA 59.769 37.037 0.00 0.00 0.00 3.36
5070 5968 7.950124 TCTCCTTGAAAGAAAAACCATAGGAAT 59.050 33.333 0.00 0.00 0.00 3.01
5071 5969 8.491045 TCCTTGAAAGAAAAACCATAGGAATT 57.509 30.769 0.00 0.00 0.00 2.17
5072 5970 8.933653 TCCTTGAAAGAAAAACCATAGGAATTT 58.066 29.630 0.00 0.00 0.00 1.82
5073 5971 9.559732 CCTTGAAAGAAAAACCATAGGAATTTT 57.440 29.630 0.00 0.00 31.85 1.82
5086 5984 9.936329 ACCATAGGAATTTTAATATCCACTTGT 57.064 29.630 4.96 0.00 35.62 3.16
5090 5988 8.753497 AGGAATTTTAATATCCACTTGTCCTC 57.247 34.615 4.96 0.00 35.62 3.71
5091 5989 7.780271 AGGAATTTTAATATCCACTTGTCCTCC 59.220 37.037 4.96 0.00 35.62 4.30
5092 5990 7.780271 GGAATTTTAATATCCACTTGTCCTCCT 59.220 37.037 0.00 0.00 33.30 3.69
5093 5991 9.190317 GAATTTTAATATCCACTTGTCCTCCTT 57.810 33.333 0.00 0.00 0.00 3.36
5094 5992 9.547279 AATTTTAATATCCACTTGTCCTCCTTT 57.453 29.630 0.00 0.00 0.00 3.11
5095 5993 8.950007 TTTTAATATCCACTTGTCCTCCTTTT 57.050 30.769 0.00 0.00 0.00 2.27
5096 5994 8.575649 TTTAATATCCACTTGTCCTCCTTTTC 57.424 34.615 0.00 0.00 0.00 2.29
5097 5995 5.779241 ATATCCACTTGTCCTCCTTTTCA 57.221 39.130 0.00 0.00 0.00 2.69
5098 5996 3.943671 TCCACTTGTCCTCCTTTTCAA 57.056 42.857 0.00 0.00 0.00 2.69
5099 5997 4.243793 TCCACTTGTCCTCCTTTTCAAA 57.756 40.909 0.00 0.00 0.00 2.69
5100 5998 4.803452 TCCACTTGTCCTCCTTTTCAAAT 58.197 39.130 0.00 0.00 0.00 2.32
5101 5999 5.208121 TCCACTTGTCCTCCTTTTCAAATT 58.792 37.500 0.00 0.00 0.00 1.82
5102 6000 5.301805 TCCACTTGTCCTCCTTTTCAAATTC 59.698 40.000 0.00 0.00 0.00 2.17
5103 6001 5.509670 CCACTTGTCCTCCTTTTCAAATTCC 60.510 44.000 0.00 0.00 0.00 3.01
5104 6002 5.302823 CACTTGTCCTCCTTTTCAAATTCCT 59.697 40.000 0.00 0.00 0.00 3.36
5105 6003 6.490040 CACTTGTCCTCCTTTTCAAATTCCTA 59.510 38.462 0.00 0.00 0.00 2.94
5106 6004 7.177392 CACTTGTCCTCCTTTTCAAATTCCTAT 59.823 37.037 0.00 0.00 0.00 2.57
5107 6005 7.730332 ACTTGTCCTCCTTTTCAAATTCCTATT 59.270 33.333 0.00 0.00 0.00 1.73
5108 6006 7.703058 TGTCCTCCTTTTCAAATTCCTATTC 57.297 36.000 0.00 0.00 0.00 1.75
5109 6007 7.237982 TGTCCTCCTTTTCAAATTCCTATTCA 58.762 34.615 0.00 0.00 0.00 2.57
5110 6008 7.895429 TGTCCTCCTTTTCAAATTCCTATTCAT 59.105 33.333 0.00 0.00 0.00 2.57
5111 6009 8.193438 GTCCTCCTTTTCAAATTCCTATTCATG 58.807 37.037 0.00 0.00 0.00 3.07
5112 6010 8.115384 TCCTCCTTTTCAAATTCCTATTCATGA 58.885 33.333 0.00 0.00 0.00 3.07
5113 6011 8.752187 CCTCCTTTTCAAATTCCTATTCATGAA 58.248 33.333 11.26 11.26 0.00 2.57
5114 6012 9.798994 CTCCTTTTCAAATTCCTATTCATGAAG 57.201 33.333 14.54 0.51 27.86 3.02
5115 6013 8.253113 TCCTTTTCAAATTCCTATTCATGAAGC 58.747 33.333 14.54 0.00 27.86 3.86
5116 6014 8.036575 CCTTTTCAAATTCCTATTCATGAAGCA 58.963 33.333 14.54 3.44 27.86 3.91
5117 6015 8.761575 TTTTCAAATTCCTATTCATGAAGCAC 57.238 30.769 14.54 0.00 27.86 4.40
5118 6016 7.465353 TTCAAATTCCTATTCATGAAGCACA 57.535 32.000 14.54 0.00 0.00 4.57
5119 6017 7.465353 TCAAATTCCTATTCATGAAGCACAA 57.535 32.000 14.54 4.90 0.00 3.33
5120 6018 7.541162 TCAAATTCCTATTCATGAAGCACAAG 58.459 34.615 14.54 6.03 0.00 3.16
5121 6019 7.394077 TCAAATTCCTATTCATGAAGCACAAGA 59.606 33.333 14.54 2.27 0.00 3.02
5122 6020 6.690194 ATTCCTATTCATGAAGCACAAGAC 57.310 37.500 14.54 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.278127 GCTAAGTTGCCTGGTACCTCA 59.722 52.381 14.36 5.74 0.00 3.86
1 2 1.555533 AGCTAAGTTGCCTGGTACCTC 59.444 52.381 14.36 2.98 0.00 3.85
2 3 1.657804 AGCTAAGTTGCCTGGTACCT 58.342 50.000 14.36 0.00 0.00 3.08
3 4 3.494573 GGATAGCTAAGTTGCCTGGTACC 60.495 52.174 4.43 4.43 0.00 3.34
4 5 3.729966 GGATAGCTAAGTTGCCTGGTAC 58.270 50.000 0.00 0.00 0.00 3.34
5 6 2.364324 CGGATAGCTAAGTTGCCTGGTA 59.636 50.000 0.00 0.00 0.00 3.25
6 7 1.139058 CGGATAGCTAAGTTGCCTGGT 59.861 52.381 0.00 0.00 0.00 4.00
7 8 1.139058 ACGGATAGCTAAGTTGCCTGG 59.861 52.381 0.00 0.00 0.00 4.45
8 9 2.159099 TCACGGATAGCTAAGTTGCCTG 60.159 50.000 0.00 0.00 0.00 4.85
9 10 2.108168 TCACGGATAGCTAAGTTGCCT 58.892 47.619 0.00 0.00 0.00 4.75
10 11 2.596904 TCACGGATAGCTAAGTTGCC 57.403 50.000 0.00 0.00 0.00 4.52
11 12 2.802816 CCATCACGGATAGCTAAGTTGC 59.197 50.000 0.00 0.00 36.56 4.17
12 13 4.322080 TCCATCACGGATAGCTAAGTTG 57.678 45.455 0.00 0.00 39.64 3.16
23 24 3.646736 TTCTAGAGAGTCCATCACGGA 57.353 47.619 0.00 0.00 43.61 4.69
24 25 3.551863 GCATTCTAGAGAGTCCATCACGG 60.552 52.174 0.00 0.00 0.00 4.94
25 26 3.551863 GGCATTCTAGAGAGTCCATCACG 60.552 52.174 0.00 0.00 0.00 4.35
26 27 3.386078 TGGCATTCTAGAGAGTCCATCAC 59.614 47.826 0.00 0.00 0.00 3.06
27 28 3.646534 TGGCATTCTAGAGAGTCCATCA 58.353 45.455 0.00 0.00 0.00 3.07
28 29 4.282957 TGATGGCATTCTAGAGAGTCCATC 59.717 45.833 23.94 23.94 41.27 3.51
29 30 4.229639 TGATGGCATTCTAGAGAGTCCAT 58.770 43.478 0.00 14.03 34.38 3.41
30 31 3.646534 TGATGGCATTCTAGAGAGTCCA 58.353 45.455 0.00 7.31 0.00 4.02
31 32 4.888326 ATGATGGCATTCTAGAGAGTCC 57.112 45.455 0.00 0.00 0.00 3.85
32 33 8.845413 AAATAATGATGGCATTCTAGAGAGTC 57.155 34.615 0.00 0.00 43.43 3.36
41 42 9.947669 GCATAGAGATAAATAATGATGGCATTC 57.052 33.333 0.00 0.00 43.43 2.67
42 43 8.618677 CGCATAGAGATAAATAATGATGGCATT 58.381 33.333 0.00 0.00 46.11 3.56
43 44 7.772292 ACGCATAGAGATAAATAATGATGGCAT 59.228 33.333 0.00 0.00 35.92 4.40
44 45 7.105588 ACGCATAGAGATAAATAATGATGGCA 58.894 34.615 0.00 0.00 0.00 4.92
45 46 7.545362 ACGCATAGAGATAAATAATGATGGC 57.455 36.000 0.00 0.00 0.00 4.40
46 47 9.764870 CAAACGCATAGAGATAAATAATGATGG 57.235 33.333 0.00 0.00 0.00 3.51
49 50 8.712363 GCTCAAACGCATAGAGATAAATAATGA 58.288 33.333 0.00 0.00 0.00 2.57
50 51 8.715998 AGCTCAAACGCATAGAGATAAATAATG 58.284 33.333 0.00 0.00 0.00 1.90
51 52 8.715998 CAGCTCAAACGCATAGAGATAAATAAT 58.284 33.333 0.00 0.00 0.00 1.28
52 53 7.710907 ACAGCTCAAACGCATAGAGATAAATAA 59.289 33.333 0.00 0.00 0.00 1.40
53 54 7.169813 CACAGCTCAAACGCATAGAGATAAATA 59.830 37.037 0.00 0.00 0.00 1.40
54 55 6.018425 CACAGCTCAAACGCATAGAGATAAAT 60.018 38.462 0.00 0.00 0.00 1.40
55 56 5.291858 CACAGCTCAAACGCATAGAGATAAA 59.708 40.000 0.00 0.00 0.00 1.40
56 57 4.805719 CACAGCTCAAACGCATAGAGATAA 59.194 41.667 0.00 0.00 0.00 1.75
57 58 4.363138 CACAGCTCAAACGCATAGAGATA 58.637 43.478 0.00 0.00 0.00 1.98
58 59 3.193263 CACAGCTCAAACGCATAGAGAT 58.807 45.455 0.00 0.00 0.00 2.75
59 60 2.610433 CACAGCTCAAACGCATAGAGA 58.390 47.619 0.00 0.00 0.00 3.10
60 61 1.061711 GCACAGCTCAAACGCATAGAG 59.938 52.381 0.00 0.00 0.00 2.43
61 62 1.078709 GCACAGCTCAAACGCATAGA 58.921 50.000 0.00 0.00 0.00 1.98
62 63 0.798159 TGCACAGCTCAAACGCATAG 59.202 50.000 0.00 0.00 0.00 2.23
63 64 1.452110 ATGCACAGCTCAAACGCATA 58.548 45.000 0.00 0.00 41.32 3.14
64 65 0.599558 AATGCACAGCTCAAACGCAT 59.400 45.000 0.00 0.00 44.84 4.73
65 66 0.385029 AAATGCACAGCTCAAACGCA 59.615 45.000 0.00 0.00 36.95 5.24
66 67 0.780002 CAAATGCACAGCTCAAACGC 59.220 50.000 0.00 0.00 0.00 4.84
67 68 2.124011 ACAAATGCACAGCTCAAACG 57.876 45.000 0.00 0.00 0.00 3.60
68 69 4.488126 TCTACAAATGCACAGCTCAAAC 57.512 40.909 0.00 0.00 0.00 2.93
69 70 4.082625 CCATCTACAAATGCACAGCTCAAA 60.083 41.667 0.00 0.00 0.00 2.69
70 71 3.441222 CCATCTACAAATGCACAGCTCAA 59.559 43.478 0.00 0.00 0.00 3.02
71 72 3.011818 CCATCTACAAATGCACAGCTCA 58.988 45.455 0.00 0.00 0.00 4.26
72 73 2.357009 CCCATCTACAAATGCACAGCTC 59.643 50.000 0.00 0.00 0.00 4.09
73 74 2.291153 ACCCATCTACAAATGCACAGCT 60.291 45.455 0.00 0.00 0.00 4.24
74 75 2.094675 ACCCATCTACAAATGCACAGC 58.905 47.619 0.00 0.00 0.00 4.40
75 76 3.084039 ACACCCATCTACAAATGCACAG 58.916 45.455 0.00 0.00 0.00 3.66
76 77 2.819019 CACACCCATCTACAAATGCACA 59.181 45.455 0.00 0.00 0.00 4.57
77 78 2.164219 CCACACCCATCTACAAATGCAC 59.836 50.000 0.00 0.00 0.00 4.57
78 79 2.445427 CCACACCCATCTACAAATGCA 58.555 47.619 0.00 0.00 0.00 3.96
79 80 1.750778 CCCACACCCATCTACAAATGC 59.249 52.381 0.00 0.00 0.00 3.56
80 81 3.282021 CTCCCACACCCATCTACAAATG 58.718 50.000 0.00 0.00 0.00 2.32
81 82 2.919602 ACTCCCACACCCATCTACAAAT 59.080 45.455 0.00 0.00 0.00 2.32
82 83 2.344592 ACTCCCACACCCATCTACAAA 58.655 47.619 0.00 0.00 0.00 2.83
83 84 2.038863 ACTCCCACACCCATCTACAA 57.961 50.000 0.00 0.00 0.00 2.41
84 85 2.038863 AACTCCCACACCCATCTACA 57.961 50.000 0.00 0.00 0.00 2.74
85 86 3.681874 GCTTAACTCCCACACCCATCTAC 60.682 52.174 0.00 0.00 0.00 2.59
86 87 2.504175 GCTTAACTCCCACACCCATCTA 59.496 50.000 0.00 0.00 0.00 1.98
87 88 1.282157 GCTTAACTCCCACACCCATCT 59.718 52.381 0.00 0.00 0.00 2.90
88 89 1.282157 AGCTTAACTCCCACACCCATC 59.718 52.381 0.00 0.00 0.00 3.51
89 90 1.372501 AGCTTAACTCCCACACCCAT 58.627 50.000 0.00 0.00 0.00 4.00
90 91 1.906574 CTAGCTTAACTCCCACACCCA 59.093 52.381 0.00 0.00 0.00 4.51
91 92 1.907255 ACTAGCTTAACTCCCACACCC 59.093 52.381 0.00 0.00 0.00 4.61
92 93 2.565834 TGACTAGCTTAACTCCCACACC 59.434 50.000 0.00 0.00 0.00 4.16
93 94 3.258622 AGTGACTAGCTTAACTCCCACAC 59.741 47.826 0.00 0.00 0.00 3.82
94 95 3.507411 AGTGACTAGCTTAACTCCCACA 58.493 45.455 0.00 0.00 0.00 4.17
95 96 4.705991 AGTAGTGACTAGCTTAACTCCCAC 59.294 45.833 0.00 0.00 32.65 4.61
96 97 4.931914 AGTAGTGACTAGCTTAACTCCCA 58.068 43.478 0.00 0.00 32.65 4.37
97 98 6.622833 CTAGTAGTGACTAGCTTAACTCCC 57.377 45.833 0.00 0.00 46.64 4.30
108 109 4.944177 AGCCCTTTTCCTAGTAGTGACTA 58.056 43.478 0.00 0.00 37.10 2.59
109 110 3.792515 AGCCCTTTTCCTAGTAGTGACT 58.207 45.455 0.00 0.00 39.92 3.41
110 111 5.873146 ATAGCCCTTTTCCTAGTAGTGAC 57.127 43.478 0.00 0.00 0.00 3.67
111 112 6.919158 TCTATAGCCCTTTTCCTAGTAGTGA 58.081 40.000 0.00 0.00 0.00 3.41
516 517 2.759973 AAGAGGAGATCGGCGGCA 60.760 61.111 10.53 0.00 0.00 5.69
550 551 4.095400 ATGGGGAGAGGAGGCCGT 62.095 66.667 0.00 0.00 0.00 5.68
621 622 2.444256 GGCATCGGGCTAGGGTCTT 61.444 63.158 0.00 0.00 44.01 3.01
706 707 4.956075 GGAGAGAAGAGAAGAGAAGGTGAT 59.044 45.833 0.00 0.00 0.00 3.06
837 838 4.194720 GCGGCTCAGGTCGACGAT 62.195 66.667 9.92 0.00 44.06 3.73
875 876 1.403814 CATCTCCGTCCTGGCTTCTA 58.596 55.000 0.00 0.00 37.80 2.10
1027 1028 0.764752 GGACGGGAGGGGAGATGAAT 60.765 60.000 0.00 0.00 0.00 2.57
1111 1112 4.028490 GATGGGGGTGGTGACGCA 62.028 66.667 0.00 0.00 44.70 5.24
1657 2023 3.953612 TGAGGAAACAAAGTTGCTCACAT 59.046 39.130 5.20 0.00 46.97 3.21
1701 2067 4.079253 GGGGTTTGCTTTTGTCTCTATCA 58.921 43.478 0.00 0.00 0.00 2.15
1728 2094 4.881850 AGAAAAGGGACACTTGTAGTTGTG 59.118 41.667 0.00 0.00 39.96 3.33
2578 3315 6.525629 AGCTAAGATTATGAACGCAAGGTAT 58.474 36.000 0.00 0.00 37.50 2.73
3538 4333 1.284198 AGCTGACAGAATGGAAGGCAT 59.716 47.619 6.65 0.00 43.62 4.40
3903 4713 1.872952 TGAACCAGTTGTTGATCTGCG 59.127 47.619 0.00 0.00 37.29 5.18
3939 4749 1.529244 GGGTTGCTGTGCCAGTTCT 60.529 57.895 4.45 0.00 33.43 3.01
4154 4985 5.385198 ACATATATGGGGCATTCGTTCTTT 58.615 37.500 16.96 0.00 0.00 2.52
4283 5116 5.862924 ACATGTCAATACTGTCTTTTCCG 57.137 39.130 0.00 0.00 0.00 4.30
4728 5567 8.583810 TTACTAGCACGCCATTAGTAATTTAG 57.416 34.615 5.67 0.00 35.86 1.85
4729 5568 8.984764 CATTACTAGCACGCCATTAGTAATTTA 58.015 33.333 14.64 0.00 43.11 1.40
4829 5727 4.729918 CTGGACCCAGGCCACTGC 62.730 72.222 5.01 0.00 43.53 4.40
4830 5728 2.930019 TCTGGACCCAGGCCACTG 60.930 66.667 15.43 0.00 43.75 3.66
4831 5729 2.106923 TACTCTGGACCCAGGCCACT 62.107 60.000 15.43 0.00 43.75 4.00
4832 5730 1.612442 TACTCTGGACCCAGGCCAC 60.612 63.158 15.43 0.00 43.75 5.01
4833 5731 1.306141 CTACTCTGGACCCAGGCCA 60.306 63.158 15.43 0.00 43.75 5.36
4834 5732 0.032416 TACTACTCTGGACCCAGGCC 60.032 60.000 15.43 0.00 43.75 5.19
4835 5733 1.063867 TCTACTACTCTGGACCCAGGC 60.064 57.143 15.43 0.00 43.75 4.85
4836 5734 3.292460 CTTCTACTACTCTGGACCCAGG 58.708 54.545 15.43 9.09 43.75 4.45
4837 5735 3.970842 ACTTCTACTACTCTGGACCCAG 58.029 50.000 9.74 9.74 44.86 4.45
4838 5736 4.628227 GCTACTTCTACTACTCTGGACCCA 60.628 50.000 0.00 0.00 0.00 4.51
4839 5737 3.884693 GCTACTTCTACTACTCTGGACCC 59.115 52.174 0.00 0.00 0.00 4.46
4840 5738 4.336153 GTGCTACTTCTACTACTCTGGACC 59.664 50.000 0.00 0.00 0.00 4.46
4841 5739 4.336153 GGTGCTACTTCTACTACTCTGGAC 59.664 50.000 0.00 0.00 0.00 4.02
4842 5740 4.018688 TGGTGCTACTTCTACTACTCTGGA 60.019 45.833 0.00 0.00 0.00 3.86
4843 5741 4.270834 TGGTGCTACTTCTACTACTCTGG 58.729 47.826 0.00 0.00 0.00 3.86
4844 5742 5.899120 TTGGTGCTACTTCTACTACTCTG 57.101 43.478 0.00 0.00 0.00 3.35
4845 5743 6.267014 TGTTTTGGTGCTACTTCTACTACTCT 59.733 38.462 0.00 0.00 0.00 3.24
4846 5744 6.453092 TGTTTTGGTGCTACTTCTACTACTC 58.547 40.000 0.00 0.00 0.00 2.59
4847 5745 6.415206 TGTTTTGGTGCTACTTCTACTACT 57.585 37.500 0.00 0.00 0.00 2.57
4848 5746 7.668525 AATGTTTTGGTGCTACTTCTACTAC 57.331 36.000 0.00 0.00 0.00 2.73
4849 5747 8.685838 AAAATGTTTTGGTGCTACTTCTACTA 57.314 30.769 0.00 0.00 0.00 1.82
4850 5748 7.582667 AAAATGTTTTGGTGCTACTTCTACT 57.417 32.000 0.00 0.00 0.00 2.57
4872 5770 6.377146 AGCAAGGAAAAGTCTACACTCAAAAA 59.623 34.615 0.00 0.00 29.93 1.94
4873 5771 5.885912 AGCAAGGAAAAGTCTACACTCAAAA 59.114 36.000 0.00 0.00 29.93 2.44
4874 5772 5.437060 AGCAAGGAAAAGTCTACACTCAAA 58.563 37.500 0.00 0.00 29.93 2.69
4875 5773 5.036117 AGCAAGGAAAAGTCTACACTCAA 57.964 39.130 0.00 0.00 29.93 3.02
4876 5774 4.100963 TGAGCAAGGAAAAGTCTACACTCA 59.899 41.667 0.00 0.00 29.93 3.41
4877 5775 4.632153 TGAGCAAGGAAAAGTCTACACTC 58.368 43.478 0.00 0.00 29.93 3.51
4878 5776 4.689612 TGAGCAAGGAAAAGTCTACACT 57.310 40.909 0.00 0.00 0.00 3.55
4879 5777 4.319839 GCTTGAGCAAGGAAAAGTCTACAC 60.320 45.833 11.78 0.00 41.59 2.90
4880 5778 3.815401 GCTTGAGCAAGGAAAAGTCTACA 59.185 43.478 11.78 0.00 41.59 2.74
4881 5779 3.189495 GGCTTGAGCAAGGAAAAGTCTAC 59.811 47.826 11.78 0.00 44.36 2.59
4882 5780 3.073062 AGGCTTGAGCAAGGAAAAGTCTA 59.927 43.478 11.78 0.00 44.36 2.59
4883 5781 2.158549 AGGCTTGAGCAAGGAAAAGTCT 60.159 45.455 11.78 0.00 44.36 3.24
4884 5782 2.030451 CAGGCTTGAGCAAGGAAAAGTC 60.030 50.000 11.78 0.00 44.36 3.01
4885 5783 1.959282 CAGGCTTGAGCAAGGAAAAGT 59.041 47.619 11.78 0.00 44.36 2.66
4886 5784 1.336609 GCAGGCTTGAGCAAGGAAAAG 60.337 52.381 11.78 0.00 44.36 2.27
4887 5785 0.675633 GCAGGCTTGAGCAAGGAAAA 59.324 50.000 11.78 0.00 44.36 2.29
4888 5786 1.181098 GGCAGGCTTGAGCAAGGAAA 61.181 55.000 11.78 0.00 44.36 3.13
4889 5787 1.604593 GGCAGGCTTGAGCAAGGAA 60.605 57.895 11.78 0.00 44.36 3.36
4890 5788 1.200760 TAGGCAGGCTTGAGCAAGGA 61.201 55.000 0.00 0.00 44.36 3.36
4891 5789 1.028868 GTAGGCAGGCTTGAGCAAGG 61.029 60.000 0.00 0.00 44.36 3.61
4892 5790 0.035630 AGTAGGCAGGCTTGAGCAAG 60.036 55.000 0.00 5.88 44.36 4.01
4893 5791 1.208052 CTAGTAGGCAGGCTTGAGCAA 59.792 52.381 0.00 0.00 44.36 3.91
4894 5792 0.826715 CTAGTAGGCAGGCTTGAGCA 59.173 55.000 0.00 0.00 44.36 4.26
4895 5793 1.115467 TCTAGTAGGCAGGCTTGAGC 58.885 55.000 0.00 0.00 41.14 4.26
4896 5794 3.551863 CGATTCTAGTAGGCAGGCTTGAG 60.552 52.174 0.00 0.00 0.00 3.02
4897 5795 2.362397 CGATTCTAGTAGGCAGGCTTGA 59.638 50.000 0.00 0.00 0.00 3.02
4898 5796 2.748605 CGATTCTAGTAGGCAGGCTTG 58.251 52.381 0.00 0.00 0.00 4.01
4899 5797 1.069358 GCGATTCTAGTAGGCAGGCTT 59.931 52.381 0.00 0.00 0.00 4.35
4900 5798 0.676736 GCGATTCTAGTAGGCAGGCT 59.323 55.000 0.38 0.38 0.00 4.58
4901 5799 0.319986 GGCGATTCTAGTAGGCAGGC 60.320 60.000 0.00 0.00 0.00 4.85
4902 5800 1.040646 TGGCGATTCTAGTAGGCAGG 58.959 55.000 0.00 0.00 35.01 4.85
4904 5802 1.409064 CACTGGCGATTCTAGTAGGCA 59.591 52.381 0.00 0.00 34.49 4.75
4905 5803 1.870167 GCACTGGCGATTCTAGTAGGC 60.870 57.143 0.00 0.00 34.49 3.93
4906 5804 2.141535 GCACTGGCGATTCTAGTAGG 57.858 55.000 0.00 0.00 34.49 3.18
4918 5816 2.101415 ACTTTTCCTTTCAAGCACTGGC 59.899 45.455 0.00 0.00 41.61 4.85
4919 5817 3.381272 TCACTTTTCCTTTCAAGCACTGG 59.619 43.478 0.00 0.00 0.00 4.00
4920 5818 4.637483 TCACTTTTCCTTTCAAGCACTG 57.363 40.909 0.00 0.00 0.00 3.66
4921 5819 4.949856 TCTTCACTTTTCCTTTCAAGCACT 59.050 37.500 0.00 0.00 0.00 4.40
4922 5820 5.248870 TCTTCACTTTTCCTTTCAAGCAC 57.751 39.130 0.00 0.00 0.00 4.40
4923 5821 5.913137 TTCTTCACTTTTCCTTTCAAGCA 57.087 34.783 0.00 0.00 0.00 3.91
4924 5822 7.920682 TGTTATTCTTCACTTTTCCTTTCAAGC 59.079 33.333 0.00 0.00 0.00 4.01
4925 5823 9.971922 ATGTTATTCTTCACTTTTCCTTTCAAG 57.028 29.630 0.00 0.00 0.00 3.02
4929 5827 9.807921 TCCTATGTTATTCTTCACTTTTCCTTT 57.192 29.630 0.00 0.00 0.00 3.11
4930 5828 9.807921 TTCCTATGTTATTCTTCACTTTTCCTT 57.192 29.630 0.00 0.00 0.00 3.36
4931 5829 9.981460 ATTCCTATGTTATTCTTCACTTTTCCT 57.019 29.630 0.00 0.00 0.00 3.36
4935 5833 9.753674 TCCAATTCCTATGTTATTCTTCACTTT 57.246 29.630 0.00 0.00 0.00 2.66
4936 5834 9.753674 TTCCAATTCCTATGTTATTCTTCACTT 57.246 29.630 0.00 0.00 0.00 3.16
4937 5835 9.753674 TTTCCAATTCCTATGTTATTCTTCACT 57.246 29.630 0.00 0.00 0.00 3.41
4939 5837 9.753674 ACTTTCCAATTCCTATGTTATTCTTCA 57.246 29.630 0.00 0.00 0.00 3.02
4964 5862 8.148351 TGCATGAATAGTAGTACCATAGGAAAC 58.852 37.037 0.00 0.00 0.00 2.78
4965 5863 8.257602 TGCATGAATAGTAGTACCATAGGAAA 57.742 34.615 0.00 0.00 0.00 3.13
4966 5864 7.849322 TGCATGAATAGTAGTACCATAGGAA 57.151 36.000 0.00 0.00 0.00 3.36
4967 5865 8.435931 AATGCATGAATAGTAGTACCATAGGA 57.564 34.615 0.00 0.00 0.00 2.94
4968 5866 8.939929 CAAATGCATGAATAGTAGTACCATAGG 58.060 37.037 0.00 0.00 0.00 2.57
4969 5867 8.939929 CCAAATGCATGAATAGTAGTACCATAG 58.060 37.037 0.00 0.00 0.00 2.23
4970 5868 8.436778 ACCAAATGCATGAATAGTAGTACCATA 58.563 33.333 0.00 0.00 0.00 2.74
4971 5869 7.290061 ACCAAATGCATGAATAGTAGTACCAT 58.710 34.615 0.00 0.00 0.00 3.55
4972 5870 6.658849 ACCAAATGCATGAATAGTAGTACCA 58.341 36.000 0.00 0.00 0.00 3.25
4973 5871 7.282224 TGAACCAAATGCATGAATAGTAGTACC 59.718 37.037 0.00 0.00 0.00 3.34
4974 5872 8.208718 TGAACCAAATGCATGAATAGTAGTAC 57.791 34.615 0.00 0.00 0.00 2.73
4975 5873 8.800370 TTGAACCAAATGCATGAATAGTAGTA 57.200 30.769 0.00 0.00 0.00 1.82
4976 5874 7.701539 TTGAACCAAATGCATGAATAGTAGT 57.298 32.000 0.00 0.00 0.00 2.73
4977 5875 7.703621 CCTTTGAACCAAATGCATGAATAGTAG 59.296 37.037 0.00 0.00 32.70 2.57
4978 5876 7.395772 TCCTTTGAACCAAATGCATGAATAGTA 59.604 33.333 0.00 0.00 32.70 1.82
4979 5877 6.211184 TCCTTTGAACCAAATGCATGAATAGT 59.789 34.615 0.00 0.00 32.70 2.12
4980 5878 6.632909 TCCTTTGAACCAAATGCATGAATAG 58.367 36.000 0.00 0.00 32.70 1.73
4981 5879 6.602410 TCCTTTGAACCAAATGCATGAATA 57.398 33.333 0.00 0.00 32.70 1.75
4982 5880 5.486735 TCCTTTGAACCAAATGCATGAAT 57.513 34.783 0.00 0.00 32.70 2.57
4983 5881 4.952071 TCCTTTGAACCAAATGCATGAA 57.048 36.364 0.00 0.00 32.70 2.57
4984 5882 4.952071 TTCCTTTGAACCAAATGCATGA 57.048 36.364 0.00 0.00 32.70 3.07
4985 5883 4.393680 CCATTCCTTTGAACCAAATGCATG 59.606 41.667 0.00 0.00 32.70 4.06
4986 5884 4.286549 TCCATTCCTTTGAACCAAATGCAT 59.713 37.500 0.00 0.00 32.70 3.96
4987 5885 3.645212 TCCATTCCTTTGAACCAAATGCA 59.355 39.130 0.00 0.00 32.70 3.96
4988 5886 4.248058 CTCCATTCCTTTGAACCAAATGC 58.752 43.478 0.00 0.00 32.70 3.56
4989 5887 4.248058 GCTCCATTCCTTTGAACCAAATG 58.752 43.478 0.00 0.00 32.70 2.32
4990 5888 3.903090 TGCTCCATTCCTTTGAACCAAAT 59.097 39.130 0.00 0.00 32.70 2.32
4991 5889 3.303938 TGCTCCATTCCTTTGAACCAAA 58.696 40.909 0.00 0.00 32.13 3.28
4992 5890 2.956132 TGCTCCATTCCTTTGAACCAA 58.044 42.857 0.00 0.00 32.13 3.67
4993 5891 2.673775 TGCTCCATTCCTTTGAACCA 57.326 45.000 0.00 0.00 32.13 3.67
4994 5892 3.306294 CCTTTGCTCCATTCCTTTGAACC 60.306 47.826 0.00 0.00 32.13 3.62
4995 5893 3.573967 TCCTTTGCTCCATTCCTTTGAAC 59.426 43.478 0.00 0.00 32.13 3.18
4996 5894 3.843422 TCCTTTGCTCCATTCCTTTGAA 58.157 40.909 0.00 0.00 34.33 2.69
4997 5895 3.524095 TCCTTTGCTCCATTCCTTTGA 57.476 42.857 0.00 0.00 0.00 2.69
4998 5896 4.605640 TTTCCTTTGCTCCATTCCTTTG 57.394 40.909 0.00 0.00 0.00 2.77
4999 5897 4.655649 AGTTTTCCTTTGCTCCATTCCTTT 59.344 37.500 0.00 0.00 0.00 3.11
5000 5898 4.039609 CAGTTTTCCTTTGCTCCATTCCTT 59.960 41.667 0.00 0.00 0.00 3.36
5001 5899 3.575687 CAGTTTTCCTTTGCTCCATTCCT 59.424 43.478 0.00 0.00 0.00 3.36
5002 5900 3.321968 ACAGTTTTCCTTTGCTCCATTCC 59.678 43.478 0.00 0.00 0.00 3.01
5003 5901 4.590850 ACAGTTTTCCTTTGCTCCATTC 57.409 40.909 0.00 0.00 0.00 2.67
5004 5902 4.524328 CCTACAGTTTTCCTTTGCTCCATT 59.476 41.667 0.00 0.00 0.00 3.16
5005 5903 4.082125 CCTACAGTTTTCCTTTGCTCCAT 58.918 43.478 0.00 0.00 0.00 3.41
5006 5904 3.137544 TCCTACAGTTTTCCTTTGCTCCA 59.862 43.478 0.00 0.00 0.00 3.86
5007 5905 3.751518 TCCTACAGTTTTCCTTTGCTCC 58.248 45.455 0.00 0.00 0.00 4.70
5008 5906 5.966742 AATCCTACAGTTTTCCTTTGCTC 57.033 39.130 0.00 0.00 0.00 4.26
5009 5907 5.598417 ACAAATCCTACAGTTTTCCTTTGCT 59.402 36.000 0.00 0.00 0.00 3.91
5010 5908 5.842907 ACAAATCCTACAGTTTTCCTTTGC 58.157 37.500 0.00 0.00 0.00 3.68
5011 5909 6.923508 GGAACAAATCCTACAGTTTTCCTTTG 59.076 38.462 0.00 0.00 45.56 2.77
5012 5910 7.050970 GGAACAAATCCTACAGTTTTCCTTT 57.949 36.000 0.00 0.00 45.56 3.11
5013 5911 6.650427 GGAACAAATCCTACAGTTTTCCTT 57.350 37.500 0.00 0.00 45.56 3.36
5027 5925 6.710744 TCAAGGAGACACTAAAGGAACAAATC 59.289 38.462 0.00 0.00 0.00 2.17
5028 5926 6.601332 TCAAGGAGACACTAAAGGAACAAAT 58.399 36.000 0.00 0.00 0.00 2.32
5029 5927 5.996644 TCAAGGAGACACTAAAGGAACAAA 58.003 37.500 0.00 0.00 0.00 2.83
5030 5928 5.623956 TCAAGGAGACACTAAAGGAACAA 57.376 39.130 0.00 0.00 0.00 2.83
5031 5929 5.623956 TTCAAGGAGACACTAAAGGAACA 57.376 39.130 0.00 0.00 0.00 3.18
5032 5930 6.289064 TCTTTCAAGGAGACACTAAAGGAAC 58.711 40.000 0.00 0.00 0.00 3.62
5033 5931 6.494666 TCTTTCAAGGAGACACTAAAGGAA 57.505 37.500 0.00 0.00 0.00 3.36
5034 5932 6.494666 TTCTTTCAAGGAGACACTAAAGGA 57.505 37.500 0.00 0.00 0.00 3.36
5035 5933 7.568199 TTTTCTTTCAAGGAGACACTAAAGG 57.432 36.000 0.00 0.00 0.00 3.11
5036 5934 7.915923 GGTTTTTCTTTCAAGGAGACACTAAAG 59.084 37.037 0.00 0.00 0.00 1.85
5037 5935 7.394923 TGGTTTTTCTTTCAAGGAGACACTAAA 59.605 33.333 0.00 0.00 0.00 1.85
5038 5936 6.887545 TGGTTTTTCTTTCAAGGAGACACTAA 59.112 34.615 0.00 0.00 0.00 2.24
5039 5937 6.419791 TGGTTTTTCTTTCAAGGAGACACTA 58.580 36.000 0.00 0.00 0.00 2.74
5040 5938 5.261216 TGGTTTTTCTTTCAAGGAGACACT 58.739 37.500 0.00 0.00 0.00 3.55
5041 5939 5.576447 TGGTTTTTCTTTCAAGGAGACAC 57.424 39.130 0.00 0.00 0.00 3.67
5042 5940 6.490040 CCTATGGTTTTTCTTTCAAGGAGACA 59.510 38.462 0.00 0.00 0.00 3.41
5043 5941 6.715264 TCCTATGGTTTTTCTTTCAAGGAGAC 59.285 38.462 0.00 0.00 0.00 3.36
5044 5942 6.848069 TCCTATGGTTTTTCTTTCAAGGAGA 58.152 36.000 0.00 0.00 0.00 3.71
5045 5943 7.524717 TTCCTATGGTTTTTCTTTCAAGGAG 57.475 36.000 0.00 0.00 32.52 3.69
5046 5944 8.491045 AATTCCTATGGTTTTTCTTTCAAGGA 57.509 30.769 0.00 0.00 0.00 3.36
5047 5945 9.559732 AAAATTCCTATGGTTTTTCTTTCAAGG 57.440 29.630 0.00 0.00 0.00 3.61
5060 5958 9.936329 ACAAGTGGATATTAAAATTCCTATGGT 57.064 29.630 4.07 0.00 0.00 3.55
5064 5962 9.847224 GAGGACAAGTGGATATTAAAATTCCTA 57.153 33.333 0.00 0.00 0.00 2.94
5065 5963 7.780271 GGAGGACAAGTGGATATTAAAATTCCT 59.220 37.037 0.00 0.00 0.00 3.36
5066 5964 7.780271 AGGAGGACAAGTGGATATTAAAATTCC 59.220 37.037 0.00 0.00 0.00 3.01
5067 5965 8.753497 AGGAGGACAAGTGGATATTAAAATTC 57.247 34.615 0.00 0.00 0.00 2.17
5068 5966 9.547279 AAAGGAGGACAAGTGGATATTAAAATT 57.453 29.630 0.00 0.00 0.00 1.82
5069 5967 9.547279 AAAAGGAGGACAAGTGGATATTAAAAT 57.453 29.630 0.00 0.00 0.00 1.82
5070 5968 8.950007 AAAAGGAGGACAAGTGGATATTAAAA 57.050 30.769 0.00 0.00 0.00 1.52
5071 5969 8.167392 TGAAAAGGAGGACAAGTGGATATTAAA 58.833 33.333 0.00 0.00 0.00 1.52
5072 5970 7.695055 TGAAAAGGAGGACAAGTGGATATTAA 58.305 34.615 0.00 0.00 0.00 1.40
5073 5971 7.265599 TGAAAAGGAGGACAAGTGGATATTA 57.734 36.000 0.00 0.00 0.00 0.98
5074 5972 6.139679 TGAAAAGGAGGACAAGTGGATATT 57.860 37.500 0.00 0.00 0.00 1.28
5075 5973 5.779241 TGAAAAGGAGGACAAGTGGATAT 57.221 39.130 0.00 0.00 0.00 1.63
5076 5974 5.576563 TTGAAAAGGAGGACAAGTGGATA 57.423 39.130 0.00 0.00 0.00 2.59
5077 5975 4.453480 TTGAAAAGGAGGACAAGTGGAT 57.547 40.909 0.00 0.00 0.00 3.41
5078 5976 3.943671 TTGAAAAGGAGGACAAGTGGA 57.056 42.857 0.00 0.00 0.00 4.02
5079 5977 5.509670 GGAATTTGAAAAGGAGGACAAGTGG 60.510 44.000 0.00 0.00 0.00 4.00
5080 5978 5.302823 AGGAATTTGAAAAGGAGGACAAGTG 59.697 40.000 0.00 0.00 0.00 3.16
5081 5979 5.458595 AGGAATTTGAAAAGGAGGACAAGT 58.541 37.500 0.00 0.00 0.00 3.16
5082 5980 7.709149 ATAGGAATTTGAAAAGGAGGACAAG 57.291 36.000 0.00 0.00 0.00 3.16
5083 5981 7.728083 TGAATAGGAATTTGAAAAGGAGGACAA 59.272 33.333 0.00 0.00 0.00 3.18
5084 5982 7.237982 TGAATAGGAATTTGAAAAGGAGGACA 58.762 34.615 0.00 0.00 0.00 4.02
5085 5983 7.703058 TGAATAGGAATTTGAAAAGGAGGAC 57.297 36.000 0.00 0.00 0.00 3.85
5086 5984 8.115384 TCATGAATAGGAATTTGAAAAGGAGGA 58.885 33.333 0.00 0.00 0.00 3.71
5087 5985 8.297470 TCATGAATAGGAATTTGAAAAGGAGG 57.703 34.615 0.00 0.00 0.00 4.30
5088 5986 9.798994 CTTCATGAATAGGAATTTGAAAAGGAG 57.201 33.333 8.96 0.00 27.03 3.69
5089 5987 8.253113 GCTTCATGAATAGGAATTTGAAAAGGA 58.747 33.333 8.96 0.00 27.03 3.36
5090 5988 8.036575 TGCTTCATGAATAGGAATTTGAAAAGG 58.963 33.333 8.96 0.00 27.03 3.11
5091 5989 8.866956 GTGCTTCATGAATAGGAATTTGAAAAG 58.133 33.333 8.96 0.00 27.03 2.27
5092 5990 8.366401 TGTGCTTCATGAATAGGAATTTGAAAA 58.634 29.630 8.96 0.00 27.03 2.29
5093 5991 7.894708 TGTGCTTCATGAATAGGAATTTGAAA 58.105 30.769 8.96 0.00 27.03 2.69
5094 5992 7.465353 TGTGCTTCATGAATAGGAATTTGAA 57.535 32.000 8.96 0.00 0.00 2.69
5095 5993 7.394077 TCTTGTGCTTCATGAATAGGAATTTGA 59.606 33.333 8.96 0.00 0.00 2.69
5096 5994 7.487189 GTCTTGTGCTTCATGAATAGGAATTTG 59.513 37.037 8.96 0.00 33.16 2.32
5097 5995 7.542025 GTCTTGTGCTTCATGAATAGGAATTT 58.458 34.615 8.96 0.00 33.16 1.82
5098 5996 7.093322 GTCTTGTGCTTCATGAATAGGAATT 57.907 36.000 8.96 0.00 33.16 2.17
5099 5997 6.690194 GTCTTGTGCTTCATGAATAGGAAT 57.310 37.500 8.96 0.00 33.16 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.