Multiple sequence alignment - TraesCS1B01G135400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G135400 chr1B 100.000 4519 0 0 1 4519 172377739 172382257 0.000000e+00 8346.0
1 TraesCS1B01G135400 chr1B 80.324 432 66 16 16 441 52031166 52031584 4.390000e-80 309.0
2 TraesCS1B01G135400 chr1B 91.071 56 5 0 4453 4508 229539154 229539209 4.850000e-10 76.8
3 TraesCS1B01G135400 chr1A 95.923 1717 57 5 2648 4351 120009880 120011596 0.000000e+00 2771.0
4 TraesCS1B01G135400 chr1A 93.920 1546 57 7 442 1970 120002327 120003852 0.000000e+00 2300.0
5 TraesCS1B01G135400 chr1A 96.608 678 20 3 1972 2647 120009135 120009811 0.000000e+00 1122.0
6 TraesCS1B01G135400 chr1A 81.551 374 58 8 21 390 405151820 405151454 9.500000e-77 298.0
7 TraesCS1B01G135400 chr1A 92.537 67 5 0 4453 4519 12410795 12410729 3.720000e-16 97.1
8 TraesCS1B01G135400 chr1A 80.672 119 11 12 4404 4515 335110935 335111048 1.040000e-11 82.4
9 TraesCS1B01G135400 chr1D 92.263 1719 86 15 2648 4351 112769160 112770846 0.000000e+00 2394.0
10 TraesCS1B01G135400 chr1D 91.425 1726 92 30 442 2119 112766867 112768584 0.000000e+00 2316.0
11 TraesCS1B01G135400 chr1D 94.919 433 10 4 442 862 112752126 112752558 0.000000e+00 667.0
12 TraesCS1B01G135400 chr1D 85.135 518 40 14 2158 2647 112768585 112769093 3.140000e-136 496.0
13 TraesCS1B01G135400 chr1D 83.333 300 37 8 21 316 391274580 391274870 9.640000e-67 265.0
14 TraesCS1B01G135400 chrUn 84.848 363 42 9 6 363 403297195 403297549 2.000000e-93 353.0
15 TraesCS1B01G135400 chrUn 100.000 35 0 0 4485 4519 475906912 475906946 1.050000e-06 65.8
16 TraesCS1B01G135400 chr5D 82.439 410 53 14 21 427 480708497 480708104 1.560000e-89 340.0
17 TraesCS1B01G135400 chr3D 82.984 382 54 7 21 398 131575571 131575945 7.240000e-88 335.0
18 TraesCS1B01G135400 chr3D 79.455 404 60 17 13 405 566614115 566613724 9.640000e-67 265.0
19 TraesCS1B01G135400 chr3D 80.274 365 57 10 21 381 579662431 579662078 1.250000e-65 261.0
20 TraesCS1B01G135400 chr4D 85.870 276 27 8 21 293 383966682 383966948 2.660000e-72 283.0
21 TraesCS1B01G135400 chr7B 89.062 64 6 1 4453 4515 551540897 551540960 1.350000e-10 78.7
22 TraesCS1B01G135400 chr7B 97.222 36 1 0 4453 4488 78125654 78125689 1.360000e-05 62.1
23 TraesCS1B01G135400 chr3A 85.526 76 10 1 4441 4515 509648 509723 1.350000e-10 78.7
24 TraesCS1B01G135400 chr4B 97.222 36 1 0 4453 4488 609576925 609576960 1.360000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G135400 chr1B 172377739 172382257 4518 False 8346.000000 8346 100.000000 1 4519 1 chr1B.!!$F2 4518
1 TraesCS1B01G135400 chr1A 120002327 120003852 1525 False 2300.000000 2300 93.920000 442 1970 1 chr1A.!!$F1 1528
2 TraesCS1B01G135400 chr1A 120009135 120011596 2461 False 1946.500000 2771 96.265500 1972 4351 2 chr1A.!!$F3 2379
3 TraesCS1B01G135400 chr1D 112766867 112770846 3979 False 1735.333333 2394 89.607667 442 4351 3 chr1D.!!$F3 3909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.034059 AGAGGCGTCAGTGGAGTTTG 59.966 55.000 9.41 0.0 0.00 2.93 F
354 355 0.036306 AGGACCGAACAGGCGAAAAT 59.964 50.000 0.00 0.0 46.52 1.82 F
1491 1511 0.107993 CACATCTGATGGTCGGCAGT 60.108 55.000 20.83 0.0 33.90 4.40 F
1643 1663 1.345415 CATGGCTGCCCTGTTTTCTTT 59.655 47.619 17.53 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1359 0.103608 TTCTTCTTCCCCTTCCCCCA 60.104 55.000 0.0 0.0 0.00 4.96 R
1506 1526 0.105964 TGGACTCAAACACCTCCGTG 59.894 55.000 0.0 0.0 46.11 4.94 R
2772 2921 0.105408 AGGCAAAAGGCTGCAACAAG 59.895 50.000 0.5 0.0 44.52 3.16 R
3612 3764 1.749033 GAGCCCTCGTATCTTGGGG 59.251 63.158 0.0 0.0 41.19 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.010575 AGAGAGGCGTCAGTGGAG 57.989 61.111 9.41 0.00 0.00 3.86
18 19 1.075836 AGAGAGGCGTCAGTGGAGT 59.924 57.895 9.41 0.00 0.00 3.85
19 20 0.540830 AGAGAGGCGTCAGTGGAGTT 60.541 55.000 9.41 0.00 0.00 3.01
20 21 0.318762 GAGAGGCGTCAGTGGAGTTT 59.681 55.000 9.41 0.00 0.00 2.66
21 22 0.034059 AGAGGCGTCAGTGGAGTTTG 59.966 55.000 9.41 0.00 0.00 2.93
22 23 0.249911 GAGGCGTCAGTGGAGTTTGT 60.250 55.000 0.52 0.00 0.00 2.83
23 24 0.532862 AGGCGTCAGTGGAGTTTGTG 60.533 55.000 0.00 0.00 0.00 3.33
24 25 1.507141 GGCGTCAGTGGAGTTTGTGG 61.507 60.000 0.00 0.00 0.00 4.17
25 26 1.941812 CGTCAGTGGAGTTTGTGGC 59.058 57.895 0.00 0.00 0.00 5.01
26 27 1.831389 CGTCAGTGGAGTTTGTGGCG 61.831 60.000 0.00 0.00 0.00 5.69
27 28 0.814010 GTCAGTGGAGTTTGTGGCGT 60.814 55.000 0.00 0.00 0.00 5.68
28 29 0.107410 TCAGTGGAGTTTGTGGCGTT 60.107 50.000 0.00 0.00 0.00 4.84
29 30 0.738389 CAGTGGAGTTTGTGGCGTTT 59.262 50.000 0.00 0.00 0.00 3.60
30 31 1.944024 CAGTGGAGTTTGTGGCGTTTA 59.056 47.619 0.00 0.00 0.00 2.01
31 32 1.944709 AGTGGAGTTTGTGGCGTTTAC 59.055 47.619 0.00 0.00 0.00 2.01
32 33 1.002142 GTGGAGTTTGTGGCGTTTACC 60.002 52.381 0.00 0.00 0.00 2.85
33 34 0.236449 GGAGTTTGTGGCGTTTACCG 59.764 55.000 0.00 0.00 40.40 4.02
34 35 0.236449 GAGTTTGTGGCGTTTACCGG 59.764 55.000 0.00 0.00 36.94 5.28
42 43 4.825252 CGTTTACCGGCGGGGAGG 62.825 72.222 31.78 16.32 39.97 4.30
52 53 4.104183 CGGGGAGGCCGGCTTTTA 62.104 66.667 28.56 0.00 0.00 1.52
53 54 2.601299 GGGGAGGCCGGCTTTTAT 59.399 61.111 28.56 7.41 0.00 1.40
54 55 1.841302 GGGGAGGCCGGCTTTTATA 59.159 57.895 28.56 0.00 0.00 0.98
55 56 0.250770 GGGGAGGCCGGCTTTTATAG 60.251 60.000 28.56 0.00 0.00 1.31
66 67 2.427506 GCTTTTATAGCCGAGGATGGG 58.572 52.381 0.00 0.00 44.48 4.00
74 75 4.227134 CGAGGATGGGCGGTGGAG 62.227 72.222 0.00 0.00 0.00 3.86
75 76 2.764128 GAGGATGGGCGGTGGAGA 60.764 66.667 0.00 0.00 0.00 3.71
76 77 2.765807 AGGATGGGCGGTGGAGAG 60.766 66.667 0.00 0.00 0.00 3.20
77 78 3.866582 GGATGGGCGGTGGAGAGG 61.867 72.222 0.00 0.00 0.00 3.69
78 79 4.554036 GATGGGCGGTGGAGAGGC 62.554 72.222 0.00 0.00 0.00 4.70
141 142 4.681978 GTCCCACGCGGCTTCACT 62.682 66.667 12.47 0.00 0.00 3.41
142 143 4.680237 TCCCACGCGGCTTCACTG 62.680 66.667 12.47 0.00 0.00 3.66
160 161 3.630148 CGCCGTCCGTGATGCATC 61.630 66.667 20.14 20.14 0.00 3.91
161 162 2.511373 GCCGTCCGTGATGCATCA 60.511 61.111 25.42 25.42 0.00 3.07
162 163 2.106074 GCCGTCCGTGATGCATCAA 61.106 57.895 30.24 13.22 38.75 2.57
163 164 1.439353 GCCGTCCGTGATGCATCAAT 61.439 55.000 30.24 0.00 38.75 2.57
164 165 0.305617 CCGTCCGTGATGCATCAATG 59.694 55.000 30.24 23.65 38.75 2.82
165 166 1.289276 CGTCCGTGATGCATCAATGA 58.711 50.000 30.24 24.35 38.75 2.57
166 167 1.665169 CGTCCGTGATGCATCAATGAA 59.335 47.619 30.24 13.67 38.75 2.57
167 168 2.095692 CGTCCGTGATGCATCAATGAAA 59.904 45.455 30.24 14.11 38.75 2.69
168 169 3.688272 GTCCGTGATGCATCAATGAAAG 58.312 45.455 30.24 16.21 38.75 2.62
169 170 2.684374 TCCGTGATGCATCAATGAAAGG 59.316 45.455 30.24 22.96 38.75 3.11
170 171 2.456989 CGTGATGCATCAATGAAAGGC 58.543 47.619 30.24 14.36 38.75 4.35
171 172 2.098607 CGTGATGCATCAATGAAAGGCT 59.901 45.455 30.24 0.00 38.75 4.58
172 173 3.444916 GTGATGCATCAATGAAAGGCTG 58.555 45.455 30.24 0.00 38.75 4.85
173 174 3.129813 GTGATGCATCAATGAAAGGCTGA 59.870 43.478 30.24 0.37 38.75 4.26
174 175 3.129813 TGATGCATCAATGAAAGGCTGAC 59.870 43.478 26.87 0.00 33.08 3.51
175 176 1.820519 TGCATCAATGAAAGGCTGACC 59.179 47.619 0.00 0.00 0.00 4.02
176 177 1.202222 GCATCAATGAAAGGCTGACCG 60.202 52.381 0.00 0.00 42.76 4.79
177 178 1.402968 CATCAATGAAAGGCTGACCGG 59.597 52.381 0.00 0.00 42.76 5.28
178 179 0.960364 TCAATGAAAGGCTGACCGGC 60.960 55.000 0.00 0.00 42.76 6.13
179 180 2.040544 AATGAAAGGCTGACCGGCG 61.041 57.895 0.00 0.00 44.22 6.46
202 203 5.998454 CGATAGCCTTGACATTGATTCTT 57.002 39.130 0.00 0.00 0.00 2.52
203 204 5.745514 CGATAGCCTTGACATTGATTCTTG 58.254 41.667 0.00 0.00 0.00 3.02
204 205 3.863142 AGCCTTGACATTGATTCTTGC 57.137 42.857 0.00 0.00 0.00 4.01
205 206 2.163010 AGCCTTGACATTGATTCTTGCG 59.837 45.455 0.00 0.00 0.00 4.85
206 207 2.733227 GCCTTGACATTGATTCTTGCGG 60.733 50.000 0.00 0.00 0.00 5.69
207 208 2.159338 CCTTGACATTGATTCTTGCGGG 60.159 50.000 0.00 0.00 0.00 6.13
208 209 2.488204 TGACATTGATTCTTGCGGGA 57.512 45.000 0.00 0.00 0.00 5.14
209 210 2.789213 TGACATTGATTCTTGCGGGAA 58.211 42.857 0.00 0.00 0.00 3.97
210 211 2.487762 TGACATTGATTCTTGCGGGAAC 59.512 45.455 0.00 0.00 0.00 3.62
222 223 2.107141 GGGAACCGAGGCGATGAG 59.893 66.667 0.00 0.00 40.86 2.90
223 224 2.107141 GGAACCGAGGCGATGAGG 59.893 66.667 0.00 0.00 0.00 3.86
224 225 2.423898 GGAACCGAGGCGATGAGGA 61.424 63.158 0.00 0.00 0.00 3.71
225 226 1.227002 GAACCGAGGCGATGAGGAC 60.227 63.158 0.00 0.00 0.00 3.85
226 227 2.938539 GAACCGAGGCGATGAGGACG 62.939 65.000 0.00 0.00 0.00 4.79
227 228 3.209812 CCGAGGCGATGAGGACGA 61.210 66.667 0.00 0.00 0.00 4.20
228 229 2.024871 CGAGGCGATGAGGACGAC 59.975 66.667 0.00 0.00 39.24 4.34
229 230 2.024871 GAGGCGATGAGGACGACG 59.975 66.667 0.00 0.00 44.04 5.12
230 231 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
231 232 1.989966 GAGGCGATGAGGACGACGAA 61.990 60.000 0.00 0.00 44.04 3.85
232 233 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
233 234 2.224885 GCGATGAGGACGACGAAGC 61.225 63.158 0.00 0.00 0.00 3.86
234 235 1.934956 CGATGAGGACGACGAAGCG 60.935 63.158 0.00 0.00 37.29 4.68
235 236 1.586564 GATGAGGACGACGAAGCGG 60.587 63.158 0.00 0.00 35.12 5.52
236 237 3.701604 ATGAGGACGACGAAGCGGC 62.702 63.158 0.00 0.00 38.96 6.53
243 244 3.173240 GACGAAGCGGCGAGTCAC 61.173 66.667 12.98 0.00 34.09 3.67
244 245 3.612371 GACGAAGCGGCGAGTCACT 62.612 63.158 12.98 0.00 34.09 3.41
245 246 3.175240 CGAAGCGGCGAGTCACTG 61.175 66.667 12.98 0.00 0.00 3.66
246 247 2.258591 GAAGCGGCGAGTCACTGA 59.741 61.111 12.98 0.00 0.00 3.41
247 248 1.153745 GAAGCGGCGAGTCACTGAT 60.154 57.895 12.98 0.00 0.00 2.90
248 249 0.100682 GAAGCGGCGAGTCACTGATA 59.899 55.000 12.98 0.00 0.00 2.15
249 250 0.179134 AAGCGGCGAGTCACTGATAC 60.179 55.000 12.98 0.00 0.00 2.24
250 251 1.939785 GCGGCGAGTCACTGATACG 60.940 63.158 12.98 0.00 0.00 3.06
251 252 1.298413 CGGCGAGTCACTGATACGG 60.298 63.158 0.00 0.00 0.00 4.02
252 253 1.589196 GGCGAGTCACTGATACGGC 60.589 63.158 14.66 14.66 41.48 5.68
253 254 1.939785 GCGAGTCACTGATACGGCG 60.940 63.158 4.80 4.80 0.00 6.46
254 255 1.298413 CGAGTCACTGATACGGCGG 60.298 63.158 13.24 0.00 0.00 6.13
255 256 1.065928 GAGTCACTGATACGGCGGG 59.934 63.158 13.24 0.00 0.00 6.13
256 257 2.585247 GTCACTGATACGGCGGGC 60.585 66.667 13.24 0.00 0.00 6.13
257 258 3.845259 TCACTGATACGGCGGGCC 61.845 66.667 13.24 0.00 0.00 5.80
258 259 4.910585 CACTGATACGGCGGGCCC 62.911 72.222 13.57 13.57 0.00 5.80
260 261 3.941188 CTGATACGGCGGGCCCAT 61.941 66.667 24.92 6.99 0.00 4.00
261 262 3.476031 CTGATACGGCGGGCCCATT 62.476 63.158 24.92 4.43 0.00 3.16
262 263 2.668550 GATACGGCGGGCCCATTC 60.669 66.667 24.92 10.07 0.00 2.67
263 264 4.265056 ATACGGCGGGCCCATTCC 62.265 66.667 24.92 18.24 0.00 3.01
275 276 3.427425 CATTCCCGTTCGCGCCAA 61.427 61.111 0.00 0.00 39.70 4.52
276 277 2.670251 ATTCCCGTTCGCGCCAAA 60.670 55.556 0.00 0.00 39.70 3.28
277 278 2.262303 ATTCCCGTTCGCGCCAAAA 61.262 52.632 0.00 0.00 39.70 2.44
278 279 1.591504 ATTCCCGTTCGCGCCAAAAT 61.592 50.000 0.00 0.00 39.70 1.82
279 280 2.190101 TTCCCGTTCGCGCCAAAATC 62.190 55.000 0.00 0.00 39.70 2.17
280 281 2.686816 CCCGTTCGCGCCAAAATCT 61.687 57.895 0.00 0.00 39.70 2.40
281 282 1.511887 CCGTTCGCGCCAAAATCTG 60.512 57.895 0.00 0.00 39.70 2.90
282 283 1.206578 CGTTCGCGCCAAAATCTGT 59.793 52.632 0.00 0.00 0.00 3.41
283 284 0.385473 CGTTCGCGCCAAAATCTGTT 60.385 50.000 0.00 0.00 0.00 3.16
284 285 1.766069 GTTCGCGCCAAAATCTGTTT 58.234 45.000 0.00 0.00 0.00 2.83
285 286 1.713932 GTTCGCGCCAAAATCTGTTTC 59.286 47.619 0.00 0.00 0.00 2.78
286 287 0.239879 TCGCGCCAAAATCTGTTTCC 59.760 50.000 0.00 0.00 0.00 3.13
287 288 0.732538 CGCGCCAAAATCTGTTTCCC 60.733 55.000 0.00 0.00 0.00 3.97
288 289 0.732538 GCGCCAAAATCTGTTTCCCG 60.733 55.000 0.00 0.00 0.00 5.14
289 290 0.109319 CGCCAAAATCTGTTTCCCGG 60.109 55.000 0.00 0.00 0.00 5.73
290 291 0.389817 GCCAAAATCTGTTTCCCGGC 60.390 55.000 0.00 0.00 33.04 6.13
291 292 0.109319 CCAAAATCTGTTTCCCGGCG 60.109 55.000 0.00 0.00 0.00 6.46
292 293 0.732538 CAAAATCTGTTTCCCGGCGC 60.733 55.000 0.00 0.00 0.00 6.53
293 294 1.873270 AAAATCTGTTTCCCGGCGCC 61.873 55.000 19.07 19.07 0.00 6.53
294 295 4.796495 ATCTGTTTCCCGGCGCCC 62.796 66.667 23.46 5.93 0.00 6.13
296 297 4.090588 CTGTTTCCCGGCGCCCTA 62.091 66.667 23.46 2.80 0.00 3.53
297 298 4.090588 TGTTTCCCGGCGCCCTAG 62.091 66.667 23.46 10.04 0.00 3.02
308 309 4.547367 GCCCTAGCGTGCCGGATT 62.547 66.667 5.05 0.00 0.00 3.01
309 310 2.280186 CCCTAGCGTGCCGGATTC 60.280 66.667 5.05 0.00 0.00 2.52
310 311 2.658593 CCTAGCGTGCCGGATTCG 60.659 66.667 5.05 7.38 0.00 3.34
320 321 2.045340 CGGATTCGGCCTGGGTTT 60.045 61.111 0.00 0.00 0.00 3.27
321 322 2.406616 CGGATTCGGCCTGGGTTTG 61.407 63.158 0.00 0.00 0.00 2.93
322 323 2.710902 GGATTCGGCCTGGGTTTGC 61.711 63.158 0.00 0.00 0.00 3.68
323 324 3.051392 GATTCGGCCTGGGTTTGCG 62.051 63.158 0.00 0.00 0.00 4.85
331 332 4.877619 TGGGTTTGCGGGCGTCAA 62.878 61.111 0.00 0.00 0.00 3.18
332 333 3.597728 GGGTTTGCGGGCGTCAAA 61.598 61.111 0.00 0.00 0.00 2.69
333 334 2.413765 GGTTTGCGGGCGTCAAAA 59.586 55.556 4.69 0.00 35.49 2.44
334 335 1.006688 GGTTTGCGGGCGTCAAAAT 60.007 52.632 4.69 0.00 35.49 1.82
335 336 0.241481 GGTTTGCGGGCGTCAAAATA 59.759 50.000 4.69 0.00 35.49 1.40
336 337 1.613270 GTTTGCGGGCGTCAAAATAG 58.387 50.000 4.69 0.00 35.49 1.73
337 338 0.523966 TTTGCGGGCGTCAAAATAGG 59.476 50.000 0.00 0.00 31.27 2.57
338 339 0.321741 TTGCGGGCGTCAAAATAGGA 60.322 50.000 0.00 0.00 0.00 2.94
339 340 1.022451 TGCGGGCGTCAAAATAGGAC 61.022 55.000 0.00 0.00 0.00 3.85
340 341 1.712018 GCGGGCGTCAAAATAGGACC 61.712 60.000 0.00 0.00 31.55 4.46
341 342 2.390427 GGGCGTCAAAATAGGACCG 58.610 57.895 0.00 0.00 31.55 4.79
342 343 0.108041 GGGCGTCAAAATAGGACCGA 60.108 55.000 0.00 0.00 31.55 4.69
343 344 1.676615 GGGCGTCAAAATAGGACCGAA 60.677 52.381 0.00 0.00 31.55 4.30
344 345 1.395954 GGCGTCAAAATAGGACCGAAC 59.604 52.381 0.00 0.00 31.55 3.95
345 346 2.070783 GCGTCAAAATAGGACCGAACA 58.929 47.619 0.00 0.00 31.55 3.18
346 347 2.093783 GCGTCAAAATAGGACCGAACAG 59.906 50.000 0.00 0.00 31.55 3.16
348 349 2.418976 GTCAAAATAGGACCGAACAGGC 59.581 50.000 0.00 0.00 46.52 4.85
349 350 1.396996 CAAAATAGGACCGAACAGGCG 59.603 52.381 0.00 0.00 46.52 5.52
350 351 0.899720 AAATAGGACCGAACAGGCGA 59.100 50.000 0.00 0.00 46.52 5.54
351 352 0.899720 AATAGGACCGAACAGGCGAA 59.100 50.000 0.00 0.00 46.52 4.70
352 353 0.899720 ATAGGACCGAACAGGCGAAA 59.100 50.000 0.00 0.00 46.52 3.46
353 354 0.680618 TAGGACCGAACAGGCGAAAA 59.319 50.000 0.00 0.00 46.52 2.29
354 355 0.036306 AGGACCGAACAGGCGAAAAT 59.964 50.000 0.00 0.00 46.52 1.82
355 356 0.879090 GGACCGAACAGGCGAAAATT 59.121 50.000 0.00 0.00 46.52 1.82
356 357 1.401018 GGACCGAACAGGCGAAAATTG 60.401 52.381 0.00 0.00 46.52 2.32
357 358 0.596082 ACCGAACAGGCGAAAATTGG 59.404 50.000 0.00 0.00 46.52 3.16
358 359 0.109319 CCGAACAGGCGAAAATTGGG 60.109 55.000 0.00 0.00 0.00 4.12
359 360 0.732538 CGAACAGGCGAAAATTGGGC 60.733 55.000 0.00 0.00 0.00 5.36
360 361 0.603065 GAACAGGCGAAAATTGGGCT 59.397 50.000 0.00 0.00 42.27 5.19
361 362 1.000843 GAACAGGCGAAAATTGGGCTT 59.999 47.619 1.51 0.00 39.67 4.35
362 363 0.603065 ACAGGCGAAAATTGGGCTTC 59.397 50.000 1.51 0.00 39.67 3.86
363 364 0.890683 CAGGCGAAAATTGGGCTTCT 59.109 50.000 1.51 0.00 39.67 2.85
364 365 0.890683 AGGCGAAAATTGGGCTTCTG 59.109 50.000 0.00 0.00 38.60 3.02
365 366 0.887933 GGCGAAAATTGGGCTTCTGA 59.112 50.000 0.00 0.00 0.00 3.27
366 367 1.272212 GGCGAAAATTGGGCTTCTGAA 59.728 47.619 0.00 0.00 0.00 3.02
367 368 2.288763 GGCGAAAATTGGGCTTCTGAAA 60.289 45.455 0.00 0.00 0.00 2.69
368 369 2.731451 GCGAAAATTGGGCTTCTGAAAC 59.269 45.455 0.00 0.00 0.00 2.78
369 370 2.979813 CGAAAATTGGGCTTCTGAAACG 59.020 45.455 0.00 0.00 0.00 3.60
370 371 2.438868 AAATTGGGCTTCTGAAACGC 57.561 45.000 1.36 1.36 0.00 4.84
371 372 0.240945 AATTGGGCTTCTGAAACGCG 59.759 50.000 3.53 3.53 0.00 6.01
372 373 1.586154 ATTGGGCTTCTGAAACGCGG 61.586 55.000 12.47 0.00 0.00 6.46
373 374 2.668550 GGGCTTCTGAAACGCGGT 60.669 61.111 12.47 0.00 0.00 5.68
374 375 2.258726 GGGCTTCTGAAACGCGGTT 61.259 57.895 10.35 10.35 0.00 4.44
375 376 1.082104 GGCTTCTGAAACGCGGTTG 60.082 57.895 17.39 0.00 0.00 3.77
376 377 1.082104 GCTTCTGAAACGCGGTTGG 60.082 57.895 17.39 7.18 0.00 3.77
377 378 1.574428 CTTCTGAAACGCGGTTGGG 59.426 57.895 17.39 6.75 0.00 4.12
378 379 2.458006 CTTCTGAAACGCGGTTGGGC 62.458 60.000 17.39 0.00 0.00 5.36
379 380 4.038080 CTGAAACGCGGTTGGGCC 62.038 66.667 17.39 0.00 0.00 5.80
397 398 1.345856 CGAATTTTCGGTACCGGCG 59.654 57.895 32.80 21.14 46.30 6.46
398 399 1.077645 CGAATTTTCGGTACCGGCGA 61.078 55.000 32.80 18.89 46.30 5.54
399 400 0.371301 GAATTTTCGGTACCGGCGAC 59.629 55.000 32.80 15.95 40.25 5.19
400 401 1.020861 AATTTTCGGTACCGGCGACC 61.021 55.000 32.80 14.89 40.25 4.79
401 402 2.169937 ATTTTCGGTACCGGCGACCA 62.170 55.000 32.80 10.91 40.25 4.02
402 403 2.374830 TTTTCGGTACCGGCGACCAA 62.375 55.000 32.80 16.53 40.25 3.67
403 404 2.374830 TTTCGGTACCGGCGACCAAA 62.375 55.000 32.80 21.21 40.25 3.28
404 405 2.357275 CGGTACCGGCGACCAAAA 60.357 61.111 27.00 0.00 36.72 2.44
405 406 2.385091 CGGTACCGGCGACCAAAAG 61.385 63.158 27.00 5.81 36.72 2.27
406 407 1.004679 GGTACCGGCGACCAAAAGA 60.005 57.895 19.02 0.00 36.91 2.52
407 408 0.603439 GGTACCGGCGACCAAAAGAA 60.603 55.000 19.02 0.00 36.91 2.52
408 409 1.228533 GTACCGGCGACCAAAAGAAA 58.771 50.000 9.30 0.00 0.00 2.52
409 410 1.603326 GTACCGGCGACCAAAAGAAAA 59.397 47.619 9.30 0.00 0.00 2.29
410 411 1.104630 ACCGGCGACCAAAAGAAAAA 58.895 45.000 9.30 0.00 0.00 1.94
411 412 1.066454 ACCGGCGACCAAAAGAAAAAG 59.934 47.619 9.30 0.00 0.00 2.27
412 413 1.601914 CCGGCGACCAAAAGAAAAAGG 60.602 52.381 9.30 0.00 0.00 3.11
413 414 1.497991 GGCGACCAAAAGAAAAAGGC 58.502 50.000 0.00 0.00 0.00 4.35
414 415 1.497991 GCGACCAAAAGAAAAAGGCC 58.502 50.000 0.00 0.00 0.00 5.19
415 416 1.872237 GCGACCAAAAGAAAAAGGCCC 60.872 52.381 0.00 0.00 0.00 5.80
416 417 1.601914 CGACCAAAAGAAAAAGGCCCG 60.602 52.381 0.00 0.00 0.00 6.13
417 418 0.756294 ACCAAAAGAAAAAGGCCCGG 59.244 50.000 0.00 0.00 0.00 5.73
418 419 0.602638 CCAAAAGAAAAAGGCCCGGC 60.603 55.000 0.00 0.00 0.00 6.13
419 420 0.943835 CAAAAGAAAAAGGCCCGGCG 60.944 55.000 0.00 0.00 0.00 6.46
420 421 2.094757 AAAAGAAAAAGGCCCGGCGG 62.095 55.000 21.46 21.46 0.00 6.13
436 437 2.111878 GGGGCATGACCGGAGATG 59.888 66.667 12.68 10.93 40.62 2.90
437 438 2.592861 GGGCATGACCGGAGATGC 60.593 66.667 25.19 25.19 40.62 3.91
438 439 2.507944 GGCATGACCGGAGATGCT 59.492 61.111 29.04 1.22 0.00 3.79
439 440 1.596477 GGCATGACCGGAGATGCTC 60.596 63.158 29.04 20.23 0.00 4.26
440 441 1.445095 GCATGACCGGAGATGCTCT 59.555 57.895 25.62 0.00 0.00 4.09
636 646 2.606519 TGCTCCCAGGTAACCGCT 60.607 61.111 0.00 0.00 37.17 5.52
821 834 1.632018 CCGCCACCAAGATTCCCCTA 61.632 60.000 0.00 0.00 0.00 3.53
989 1003 1.988982 GCAATCCCTCCCTGGAGACC 61.989 65.000 14.86 0.00 44.53 3.85
1104 1118 3.252284 CCACCACCTCCACCTGCT 61.252 66.667 0.00 0.00 0.00 4.24
1257 1277 2.030401 CGCCACATCGTCGGGAAAA 61.030 57.895 0.00 0.00 0.00 2.29
1278 1298 0.688487 CCCCAGACCCGTACAGAAAA 59.312 55.000 0.00 0.00 0.00 2.29
1291 1311 3.531262 ACAGAAAATACGTTTCACCGC 57.469 42.857 0.00 0.00 46.98 5.68
1367 1387 1.544759 GGGGAAGAAGAAAGCGGTGAA 60.545 52.381 0.00 0.00 0.00 3.18
1377 1397 5.344743 AGAAAGCGGTGAAGATCAAGATA 57.655 39.130 0.00 0.00 0.00 1.98
1413 1433 3.383092 CCTCAAGAGGCTCATCAGC 57.617 57.895 18.26 0.00 46.06 4.26
1477 1497 4.386867 TTGGAGACGATTAGGACACATC 57.613 45.455 0.00 0.00 0.00 3.06
1491 1511 0.107993 CACATCTGATGGTCGGCAGT 60.108 55.000 20.83 0.00 33.90 4.40
1551 1571 3.845992 TGAAGAATGAAGGATGGACTGGA 59.154 43.478 0.00 0.00 0.00 3.86
1566 1586 2.178273 GGATTGTTCCGCGGCAAC 59.822 61.111 23.51 24.16 30.72 4.17
1643 1663 1.345415 CATGGCTGCCCTGTTTTCTTT 59.655 47.619 17.53 0.00 0.00 2.52
1803 1832 6.039829 TGCACATACCAACTCACATACAAAAA 59.960 34.615 0.00 0.00 0.00 1.94
1820 1849 6.806120 ACAAAAATTAAGCGTCACTTGTTC 57.194 33.333 0.00 0.00 39.58 3.18
1823 1852 7.855904 ACAAAAATTAAGCGTCACTTGTTCTAG 59.144 33.333 0.00 0.00 39.58 2.43
1831 1860 3.610242 CGTCACTTGTTCTAGATCAGTGC 59.390 47.826 16.42 12.32 0.00 4.40
1909 1957 8.571336 GCAAAGTGCCTACATATATTCTTCAAT 58.429 33.333 0.00 0.00 37.42 2.57
1942 1991 7.110810 ACTATTTAACCCTGGCTAACTTCTTC 58.889 38.462 0.00 0.00 0.00 2.87
2096 2147 7.258022 TCAATCTAGTTCAGAAGAGATCTCG 57.742 40.000 16.97 3.10 35.73 4.04
2153 2205 7.865707 TCAGTATTTGTTTCAGAAGAGCTTTC 58.134 34.615 0.00 0.00 0.00 2.62
2226 2278 3.134081 TCTCATTTCGTCATTAGGGACCC 59.866 47.826 0.59 0.59 34.24 4.46
2236 2288 5.699458 CGTCATTAGGGACCCATTATGTTAC 59.301 44.000 14.60 7.17 34.24 2.50
2377 2452 6.896883 AGTAGGTTGAAGTCTTAAACAAGGT 58.103 36.000 13.80 0.00 0.00 3.50
2538 2617 9.573166 TCTCCGGATTATGTTCATCATTTAAAT 57.427 29.630 3.57 0.00 37.91 1.40
2599 2678 5.827267 TGAAACTTCAATCATGTCTTGACCA 59.173 36.000 11.35 1.05 32.33 4.02
2662 2809 9.614792 CTTTACAACCTCTAATGCTATTTACCT 57.385 33.333 0.00 0.00 0.00 3.08
2783 2932 2.888834 TTTTTCCTCTTGTTGCAGCC 57.111 45.000 0.00 0.00 0.00 4.85
2846 2995 2.573462 CTGGGGAAGAACAGAAGATCCA 59.427 50.000 0.00 0.00 36.86 3.41
3152 3301 3.393426 ACCCCAAGTCTAATCGGAGTA 57.607 47.619 0.00 0.00 0.00 2.59
3179 3328 4.158394 CCATATGCAGCAACCAACTACTTT 59.842 41.667 0.00 0.00 0.00 2.66
3338 3490 1.598130 GCAAGTCGGAGCTGTTGGT 60.598 57.895 0.00 0.00 0.00 3.67
3572 3724 3.205338 AGTGGCTTGAATTTTGTTTGCC 58.795 40.909 0.00 0.00 39.33 4.52
3583 3735 7.831753 TGAATTTTGTTTGCCGATCCTATTAA 58.168 30.769 0.00 0.00 0.00 1.40
3669 3823 0.969149 GGGAAACTTTTGGCCTCCTG 59.031 55.000 3.32 0.00 0.00 3.86
3700 3854 8.540388 TGAAGTTACCTGACTAAGCTCAATAAT 58.460 33.333 0.00 0.00 0.00 1.28
3750 3904 1.739562 GTCTCAGCTTGCCCTGACG 60.740 63.158 0.00 0.00 36.96 4.35
3763 3917 4.643463 TGCCCTGACGAAAAGTTACATAA 58.357 39.130 0.00 0.00 0.00 1.90
3921 4083 6.801539 TCAGTTCATTGTGTTATGGACTTC 57.198 37.500 0.00 0.00 40.69 3.01
3931 4093 7.202016 TGTGTTATGGACTTCTGATTTTGAC 57.798 36.000 0.00 0.00 0.00 3.18
3932 4094 6.998074 TGTGTTATGGACTTCTGATTTTGACT 59.002 34.615 0.00 0.00 0.00 3.41
3985 4148 1.075542 TTTGATGCCAACTCGTAGCG 58.924 50.000 0.00 0.00 30.88 4.26
3998 4161 2.424557 TCGTAGCGAGTCTTCAAGAGT 58.575 47.619 0.00 0.00 0.00 3.24
4145 4308 6.402442 CGCATTGATCAAGAACTGAACACATA 60.402 38.462 14.54 0.00 36.64 2.29
4351 4514 1.187704 CTGCGCAAAATGTTCAACGTG 59.812 47.619 13.05 0.00 0.00 4.49
4352 4515 1.202188 TGCGCAAAATGTTCAACGTGA 60.202 42.857 8.16 0.00 0.00 4.35
4353 4516 1.849219 GCGCAAAATGTTCAACGTGAA 59.151 42.857 0.30 0.00 33.32 3.18
4367 4530 7.665561 TTCAACGTGAACAATATCTGAATGA 57.334 32.000 0.00 0.00 30.26 2.57
4368 4531 7.848223 TCAACGTGAACAATATCTGAATGAT 57.152 32.000 0.00 0.00 39.11 2.45
4369 4532 8.940768 TCAACGTGAACAATATCTGAATGATA 57.059 30.769 0.00 0.00 41.38 2.15
4371 4534 9.803130 CAACGTGAACAATATCTGAATGATATC 57.197 33.333 0.00 0.00 44.98 1.63
4372 4535 9.770097 AACGTGAACAATATCTGAATGATATCT 57.230 29.630 3.98 0.00 44.98 1.98
4373 4536 9.770097 ACGTGAACAATATCTGAATGATATCTT 57.230 29.630 3.98 0.00 44.98 2.40
4383 4546 7.502060 TCTGAATGATATCTTTCCCTATCCC 57.498 40.000 22.07 3.30 31.34 3.85
4384 4547 7.259391 TCTGAATGATATCTTTCCCTATCCCT 58.741 38.462 22.07 0.00 31.34 4.20
4385 4548 8.409825 TCTGAATGATATCTTTCCCTATCCCTA 58.590 37.037 22.07 5.80 31.34 3.53
4386 4549 9.223291 CTGAATGATATCTTTCCCTATCCCTAT 57.777 37.037 22.07 0.00 31.34 2.57
4387 4550 9.218525 TGAATGATATCTTTCCCTATCCCTATC 57.781 37.037 22.07 1.61 31.34 2.08
4388 4551 8.574309 AATGATATCTTTCCCTATCCCTATCC 57.426 38.462 3.98 0.00 0.00 2.59
4389 4552 6.453476 TGATATCTTTCCCTATCCCTATCCC 58.547 44.000 3.98 0.00 0.00 3.85
4390 4553 6.224849 TGATATCTTTCCCTATCCCTATCCCT 59.775 42.308 3.98 0.00 0.00 4.20
4391 4554 7.415089 TGATATCTTTCCCTATCCCTATCCCTA 59.585 40.741 3.98 0.00 0.00 3.53
4392 4555 6.715353 ATCTTTCCCTATCCCTATCCCTAT 57.285 41.667 0.00 0.00 0.00 2.57
4393 4556 6.106407 TCTTTCCCTATCCCTATCCCTATC 57.894 45.833 0.00 0.00 0.00 2.08
4394 4557 4.920781 TTCCCTATCCCTATCCCTATCC 57.079 50.000 0.00 0.00 0.00 2.59
4395 4558 3.148331 TCCCTATCCCTATCCCTATCCC 58.852 54.545 0.00 0.00 0.00 3.85
4396 4559 3.151634 CCCTATCCCTATCCCTATCCCT 58.848 54.545 0.00 0.00 0.00 4.20
4397 4560 4.011682 TCCCTATCCCTATCCCTATCCCTA 60.012 50.000 0.00 0.00 0.00 3.53
4398 4561 4.935840 CCCTATCCCTATCCCTATCCCTAT 59.064 50.000 0.00 0.00 0.00 2.57
4399 4562 5.016890 CCCTATCCCTATCCCTATCCCTATC 59.983 52.000 0.00 0.00 0.00 2.08
4400 4563 5.016890 CCTATCCCTATCCCTATCCCTATCC 59.983 52.000 0.00 0.00 0.00 2.59
4401 4564 3.148331 TCCCTATCCCTATCCCTATCCC 58.852 54.545 0.00 0.00 0.00 3.85
4402 4565 3.151634 CCCTATCCCTATCCCTATCCCT 58.848 54.545 0.00 0.00 0.00 4.20
4403 4566 4.011682 TCCCTATCCCTATCCCTATCCCTA 60.012 50.000 0.00 0.00 0.00 3.53
4404 4567 4.935840 CCCTATCCCTATCCCTATCCCTAT 59.064 50.000 0.00 0.00 0.00 2.57
4405 4568 6.113162 CCCTATCCCTATCCCTATCCCTATA 58.887 48.000 0.00 0.00 0.00 1.31
4406 4569 6.752639 CCCTATCCCTATCCCTATCCCTATAT 59.247 46.154 0.00 0.00 0.00 0.86
4407 4570 7.923867 CCCTATCCCTATCCCTATCCCTATATA 59.076 44.444 0.00 0.00 0.00 0.86
4408 4571 9.555083 CCTATCCCTATCCCTATCCCTATATAT 57.445 40.741 0.00 0.00 0.00 0.86
4484 4647 4.842139 CAATTAGTGCTTCTGGTCGTAC 57.158 45.455 0.00 0.00 0.00 3.67
4485 4648 2.624316 TTAGTGCTTCTGGTCGTACG 57.376 50.000 9.53 9.53 0.00 3.67
4486 4649 1.527034 TAGTGCTTCTGGTCGTACGT 58.473 50.000 16.05 0.00 0.00 3.57
4487 4650 0.240411 AGTGCTTCTGGTCGTACGTC 59.760 55.000 16.05 9.80 0.00 4.34
4488 4651 1.063951 GTGCTTCTGGTCGTACGTCG 61.064 60.000 16.05 0.00 41.41 5.12
4489 4652 1.208614 GCTTCTGGTCGTACGTCGT 59.791 57.895 16.05 2.21 40.80 4.34
4490 4653 0.792356 GCTTCTGGTCGTACGTCGTC 60.792 60.000 16.05 4.75 40.80 4.20
4491 4654 0.517946 CTTCTGGTCGTACGTCGTCG 60.518 60.000 16.05 6.02 40.80 5.12
4492 4655 2.498761 TTCTGGTCGTACGTCGTCGC 62.499 60.000 16.05 0.00 41.18 5.19
4493 4656 3.989566 CTGGTCGTACGTCGTCGCC 62.990 68.421 16.05 11.27 41.18 5.54
4495 4658 4.430423 GTCGTACGTCGTCGCCGT 62.430 66.667 16.05 6.55 42.06 5.68
4496 4659 3.711842 TCGTACGTCGTCGCCGTT 61.712 61.111 16.05 0.00 39.60 4.44
4497 4660 2.796617 CGTACGTCGTCGCCGTTT 60.797 61.111 6.64 0.00 39.60 3.60
4498 4661 2.356796 CGTACGTCGTCGCCGTTTT 61.357 57.895 6.64 0.00 39.60 2.43
4499 4662 1.845985 GTACGTCGTCGCCGTTTTT 59.154 52.632 6.64 0.00 39.60 1.94
4500 4663 1.049251 GTACGTCGTCGCCGTTTTTA 58.951 50.000 6.64 0.00 39.60 1.52
4501 4664 1.049251 TACGTCGTCGCCGTTTTTAC 58.951 50.000 6.64 0.00 39.60 2.01
4502 4665 0.869454 ACGTCGTCGCCGTTTTTACA 60.869 50.000 0.00 0.00 41.18 2.41
4503 4666 0.229247 CGTCGTCGCCGTTTTTACAA 59.771 50.000 0.00 0.00 35.01 2.41
4504 4667 1.331854 CGTCGTCGCCGTTTTTACAAA 60.332 47.619 0.00 0.00 35.01 2.83
4505 4668 2.702922 GTCGTCGCCGTTTTTACAAAA 58.297 42.857 0.00 0.00 35.01 2.44
4506 4669 3.097185 GTCGTCGCCGTTTTTACAAAAA 58.903 40.909 0.00 0.00 35.67 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.540830 AACTCCACTGACGCCTCTCT 60.541 55.000 0.00 0.00 0.00 3.10
1 2 0.318762 AAACTCCACTGACGCCTCTC 59.681 55.000 0.00 0.00 0.00 3.20
2 3 0.034059 CAAACTCCACTGACGCCTCT 59.966 55.000 0.00 0.00 0.00 3.69
3 4 0.249911 ACAAACTCCACTGACGCCTC 60.250 55.000 0.00 0.00 0.00 4.70
4 5 0.532862 CACAAACTCCACTGACGCCT 60.533 55.000 0.00 0.00 0.00 5.52
5 6 1.507141 CCACAAACTCCACTGACGCC 61.507 60.000 0.00 0.00 0.00 5.68
6 7 1.941812 CCACAAACTCCACTGACGC 59.058 57.895 0.00 0.00 0.00 5.19
7 8 1.831389 CGCCACAAACTCCACTGACG 61.831 60.000 0.00 0.00 0.00 4.35
8 9 0.814010 ACGCCACAAACTCCACTGAC 60.814 55.000 0.00 0.00 0.00 3.51
9 10 0.107410 AACGCCACAAACTCCACTGA 60.107 50.000 0.00 0.00 0.00 3.41
10 11 0.738389 AAACGCCACAAACTCCACTG 59.262 50.000 0.00 0.00 0.00 3.66
11 12 1.944709 GTAAACGCCACAAACTCCACT 59.055 47.619 0.00 0.00 0.00 4.00
12 13 1.002142 GGTAAACGCCACAAACTCCAC 60.002 52.381 0.00 0.00 0.00 4.02
13 14 1.310904 GGTAAACGCCACAAACTCCA 58.689 50.000 0.00 0.00 0.00 3.86
14 15 0.236449 CGGTAAACGCCACAAACTCC 59.764 55.000 0.00 0.00 34.82 3.85
15 16 0.236449 CCGGTAAACGCCACAAACTC 59.764 55.000 0.00 0.00 42.52 3.01
16 17 1.788067 GCCGGTAAACGCCACAAACT 61.788 55.000 1.90 0.00 42.52 2.66
17 18 1.370778 GCCGGTAAACGCCACAAAC 60.371 57.895 1.90 0.00 42.52 2.93
18 19 2.894565 CGCCGGTAAACGCCACAAA 61.895 57.895 1.90 0.00 42.52 2.83
19 20 3.347405 CGCCGGTAAACGCCACAA 61.347 61.111 1.90 0.00 42.52 3.33
25 26 4.825252 CCTCCCCGCCGGTAAACG 62.825 72.222 1.90 0.00 43.80 3.60
36 37 0.250770 CTATAAAAGCCGGCCTCCCC 60.251 60.000 26.15 0.00 0.00 4.81
37 38 0.889638 GCTATAAAAGCCGGCCTCCC 60.890 60.000 26.15 0.00 46.25 4.30
38 39 2.630214 GCTATAAAAGCCGGCCTCC 58.370 57.895 26.15 0.00 46.25 4.30
47 48 2.427506 GCCCATCCTCGGCTATAAAAG 58.572 52.381 0.00 0.00 43.48 2.27
48 49 1.270625 CGCCCATCCTCGGCTATAAAA 60.271 52.381 0.00 0.00 44.73 1.52
49 50 0.320374 CGCCCATCCTCGGCTATAAA 59.680 55.000 0.00 0.00 44.73 1.40
50 51 1.541310 CCGCCCATCCTCGGCTATAA 61.541 60.000 0.00 0.00 44.73 0.98
51 52 1.982395 CCGCCCATCCTCGGCTATA 60.982 63.158 0.00 0.00 44.73 1.31
52 53 3.314331 CCGCCCATCCTCGGCTAT 61.314 66.667 0.00 0.00 44.73 2.97
57 58 4.227134 CTCCACCGCCCATCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
58 59 2.764128 TCTCCACCGCCCATCCTC 60.764 66.667 0.00 0.00 0.00 3.71
59 60 2.765807 CTCTCCACCGCCCATCCT 60.766 66.667 0.00 0.00 0.00 3.24
60 61 3.866582 CCTCTCCACCGCCCATCC 61.867 72.222 0.00 0.00 0.00 3.51
61 62 4.554036 GCCTCTCCACCGCCCATC 62.554 72.222 0.00 0.00 0.00 3.51
124 125 4.681978 AGTGAAGCCGCGTGGGAC 62.682 66.667 18.41 0.00 38.47 4.46
125 126 4.680237 CAGTGAAGCCGCGTGGGA 62.680 66.667 18.41 0.00 38.47 4.37
143 144 3.630148 GATGCATCACGGACGGCG 61.630 66.667 21.92 4.80 0.00 6.46
144 145 1.439353 ATTGATGCATCACGGACGGC 61.439 55.000 28.72 0.00 36.36 5.68
145 146 0.305617 CATTGATGCATCACGGACGG 59.694 55.000 28.72 10.79 36.36 4.79
146 147 1.289276 TCATTGATGCATCACGGACG 58.711 50.000 28.72 14.76 36.36 4.79
147 148 3.488047 CCTTTCATTGATGCATCACGGAC 60.488 47.826 28.72 0.88 36.36 4.79
148 149 2.684374 CCTTTCATTGATGCATCACGGA 59.316 45.455 28.72 23.75 36.36 4.69
149 150 2.797087 GCCTTTCATTGATGCATCACGG 60.797 50.000 28.72 21.97 36.36 4.94
150 151 2.098607 AGCCTTTCATTGATGCATCACG 59.901 45.455 28.72 21.55 36.36 4.35
151 152 3.129813 TCAGCCTTTCATTGATGCATCAC 59.870 43.478 28.72 14.45 36.36 3.06
152 153 3.129813 GTCAGCCTTTCATTGATGCATCA 59.870 43.478 25.42 25.42 34.44 3.07
153 154 3.490419 GGTCAGCCTTTCATTGATGCATC 60.490 47.826 20.14 20.14 0.00 3.91
154 155 2.429610 GGTCAGCCTTTCATTGATGCAT 59.570 45.455 0.00 0.00 0.00 3.96
155 156 1.820519 GGTCAGCCTTTCATTGATGCA 59.179 47.619 0.00 0.00 0.00 3.96
156 157 1.202222 CGGTCAGCCTTTCATTGATGC 60.202 52.381 0.00 0.00 0.00 3.91
157 158 1.402968 CCGGTCAGCCTTTCATTGATG 59.597 52.381 0.00 0.00 0.00 3.07
158 159 1.755179 CCGGTCAGCCTTTCATTGAT 58.245 50.000 0.00 0.00 0.00 2.57
159 160 0.960364 GCCGGTCAGCCTTTCATTGA 60.960 55.000 1.90 0.00 0.00 2.57
160 161 1.508088 GCCGGTCAGCCTTTCATTG 59.492 57.895 1.90 0.00 0.00 2.82
161 162 2.040544 CGCCGGTCAGCCTTTCATT 61.041 57.895 1.90 0.00 0.00 2.57
162 163 2.436646 CGCCGGTCAGCCTTTCAT 60.437 61.111 1.90 0.00 0.00 2.57
177 178 0.041839 CAATGTCAAGGCTATCGCGC 60.042 55.000 0.00 0.00 36.88 6.86
178 179 1.570813 TCAATGTCAAGGCTATCGCG 58.429 50.000 0.00 0.00 36.88 5.87
179 180 3.812053 AGAATCAATGTCAAGGCTATCGC 59.188 43.478 0.00 0.00 0.00 4.58
180 181 5.745514 CAAGAATCAATGTCAAGGCTATCG 58.254 41.667 0.00 0.00 0.00 2.92
181 182 5.517904 GCAAGAATCAATGTCAAGGCTATC 58.482 41.667 0.00 0.00 0.00 2.08
182 183 4.036027 CGCAAGAATCAATGTCAAGGCTAT 59.964 41.667 0.00 0.00 43.02 2.97
183 184 3.374988 CGCAAGAATCAATGTCAAGGCTA 59.625 43.478 0.00 0.00 43.02 3.93
184 185 2.163010 CGCAAGAATCAATGTCAAGGCT 59.837 45.455 0.00 0.00 43.02 4.58
185 186 2.523015 CGCAAGAATCAATGTCAAGGC 58.477 47.619 0.00 0.00 43.02 4.35
186 187 2.159338 CCCGCAAGAATCAATGTCAAGG 60.159 50.000 0.00 0.00 43.02 3.61
187 188 2.749076 TCCCGCAAGAATCAATGTCAAG 59.251 45.455 0.00 0.00 43.02 3.02
188 189 2.789213 TCCCGCAAGAATCAATGTCAA 58.211 42.857 0.00 0.00 43.02 3.18
189 190 2.487762 GTTCCCGCAAGAATCAATGTCA 59.512 45.455 0.00 0.00 43.02 3.58
190 191 2.159379 GGTTCCCGCAAGAATCAATGTC 60.159 50.000 0.00 0.00 43.02 3.06
191 192 1.818674 GGTTCCCGCAAGAATCAATGT 59.181 47.619 0.00 0.00 43.02 2.71
192 193 1.202177 CGGTTCCCGCAAGAATCAATG 60.202 52.381 0.00 0.00 41.17 2.82
193 194 1.094785 CGGTTCCCGCAAGAATCAAT 58.905 50.000 0.00 0.00 41.17 2.57
194 195 2.550487 CGGTTCCCGCAAGAATCAA 58.450 52.632 0.00 0.00 41.17 2.57
195 196 4.294523 CGGTTCCCGCAAGAATCA 57.705 55.556 0.00 0.00 41.17 2.57
205 206 2.107141 CTCATCGCCTCGGTTCCC 59.893 66.667 0.00 0.00 0.00 3.97
206 207 2.107141 CCTCATCGCCTCGGTTCC 59.893 66.667 0.00 0.00 0.00 3.62
207 208 1.227002 GTCCTCATCGCCTCGGTTC 60.227 63.158 0.00 0.00 0.00 3.62
208 209 2.893398 GTCCTCATCGCCTCGGTT 59.107 61.111 0.00 0.00 0.00 4.44
209 210 3.518998 CGTCCTCATCGCCTCGGT 61.519 66.667 0.00 0.00 0.00 4.69
210 211 3.209812 TCGTCCTCATCGCCTCGG 61.210 66.667 0.00 0.00 0.00 4.63
211 212 2.024871 GTCGTCCTCATCGCCTCG 59.975 66.667 0.00 0.00 0.00 4.63
212 213 1.989966 TTCGTCGTCCTCATCGCCTC 61.990 60.000 0.00 0.00 0.00 4.70
213 214 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
214 215 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
215 216 2.224885 GCTTCGTCGTCCTCATCGC 61.225 63.158 0.00 0.00 0.00 4.58
216 217 1.934956 CGCTTCGTCGTCCTCATCG 60.935 63.158 0.00 0.00 0.00 3.84
217 218 1.586564 CCGCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
218 219 2.490217 CCGCTTCGTCGTCCTCAT 59.510 61.111 0.00 0.00 0.00 2.90
219 220 4.415332 GCCGCTTCGTCGTCCTCA 62.415 66.667 0.00 0.00 0.00 3.86
223 224 4.755614 ACTCGCCGCTTCGTCGTC 62.756 66.667 0.00 0.00 0.00 4.20
224 225 4.755614 GACTCGCCGCTTCGTCGT 62.756 66.667 0.00 0.00 0.00 4.34
225 226 4.753877 TGACTCGCCGCTTCGTCG 62.754 66.667 0.00 0.00 0.00 5.12
226 227 3.173240 GTGACTCGCCGCTTCGTC 61.173 66.667 0.00 0.00 0.00 4.20
227 228 3.671411 AGTGACTCGCCGCTTCGT 61.671 61.111 0.00 0.00 0.00 3.85
228 229 2.874010 ATCAGTGACTCGCCGCTTCG 62.874 60.000 0.00 0.00 0.00 3.79
229 230 0.100682 TATCAGTGACTCGCCGCTTC 59.899 55.000 0.00 0.00 0.00 3.86
230 231 0.179134 GTATCAGTGACTCGCCGCTT 60.179 55.000 0.00 0.00 0.00 4.68
231 232 1.433879 GTATCAGTGACTCGCCGCT 59.566 57.895 0.00 0.00 0.00 5.52
232 233 1.939785 CGTATCAGTGACTCGCCGC 60.940 63.158 0.00 0.00 0.00 6.53
233 234 1.298413 CCGTATCAGTGACTCGCCG 60.298 63.158 11.68 3.41 0.00 6.46
234 235 1.589196 GCCGTATCAGTGACTCGCC 60.589 63.158 11.68 0.00 0.00 5.54
235 236 1.939785 CGCCGTATCAGTGACTCGC 60.940 63.158 11.68 3.92 0.00 5.03
236 237 1.298413 CCGCCGTATCAGTGACTCG 60.298 63.158 0.00 3.29 0.00 4.18
237 238 1.065928 CCCGCCGTATCAGTGACTC 59.934 63.158 0.00 0.00 0.00 3.36
238 239 3.077519 GCCCGCCGTATCAGTGACT 62.078 63.158 0.00 0.00 0.00 3.41
239 240 2.585247 GCCCGCCGTATCAGTGAC 60.585 66.667 0.00 0.00 0.00 3.67
240 241 3.845259 GGCCCGCCGTATCAGTGA 61.845 66.667 0.00 0.00 0.00 3.41
241 242 4.910585 GGGCCCGCCGTATCAGTG 62.911 72.222 5.69 0.00 36.85 3.66
243 244 3.476031 AATGGGCCCGCCGTATCAG 62.476 63.158 19.37 0.00 36.85 2.90
244 245 3.469863 GAATGGGCCCGCCGTATCA 62.470 63.158 19.37 0.00 36.85 2.15
245 246 2.668550 GAATGGGCCCGCCGTATC 60.669 66.667 19.37 4.89 36.85 2.24
246 247 4.265056 GGAATGGGCCCGCCGTAT 62.265 66.667 19.37 0.34 36.85 3.06
258 259 2.465097 TTTTGGCGCGAACGGGAATG 62.465 55.000 12.10 0.00 40.57 2.67
259 260 1.591504 ATTTTGGCGCGAACGGGAAT 61.592 50.000 12.10 0.00 40.57 3.01
260 261 2.190101 GATTTTGGCGCGAACGGGAA 62.190 55.000 12.10 0.00 40.57 3.97
261 262 2.670251 ATTTTGGCGCGAACGGGA 60.670 55.556 12.10 0.00 40.57 5.14
262 263 2.202427 GATTTTGGCGCGAACGGG 60.202 61.111 12.10 6.89 40.57 5.28
263 264 1.511887 CAGATTTTGGCGCGAACGG 60.512 57.895 12.10 0.00 40.57 4.44
264 265 0.385473 AACAGATTTTGGCGCGAACG 60.385 50.000 12.10 0.00 44.07 3.95
265 266 1.713932 GAAACAGATTTTGGCGCGAAC 59.286 47.619 12.10 1.21 0.00 3.95
266 267 1.335506 GGAAACAGATTTTGGCGCGAA 60.336 47.619 12.10 0.00 0.00 4.70
267 268 0.239879 GGAAACAGATTTTGGCGCGA 59.760 50.000 12.10 0.00 0.00 5.87
268 269 0.732538 GGGAAACAGATTTTGGCGCG 60.733 55.000 0.00 0.00 0.00 6.86
269 270 0.732538 CGGGAAACAGATTTTGGCGC 60.733 55.000 0.00 0.00 0.00 6.53
270 271 0.109319 CCGGGAAACAGATTTTGGCG 60.109 55.000 0.00 0.00 0.00 5.69
271 272 0.389817 GCCGGGAAACAGATTTTGGC 60.390 55.000 2.18 0.00 35.26 4.52
272 273 0.109319 CGCCGGGAAACAGATTTTGG 60.109 55.000 2.18 0.00 0.00 3.28
273 274 0.732538 GCGCCGGGAAACAGATTTTG 60.733 55.000 2.18 0.00 0.00 2.44
274 275 1.584495 GCGCCGGGAAACAGATTTT 59.416 52.632 2.18 0.00 0.00 1.82
275 276 2.340328 GGCGCCGGGAAACAGATTT 61.340 57.895 12.58 0.00 0.00 2.17
276 277 2.750237 GGCGCCGGGAAACAGATT 60.750 61.111 12.58 0.00 0.00 2.40
277 278 4.796495 GGGCGCCGGGAAACAGAT 62.796 66.667 22.54 0.00 0.00 2.90
279 280 4.090588 TAGGGCGCCGGGAAACAG 62.091 66.667 22.54 0.00 0.00 3.16
280 281 4.090588 CTAGGGCGCCGGGAAACA 62.091 66.667 22.54 0.00 0.00 2.83
303 304 2.045340 AAACCCAGGCCGAATCCG 60.045 61.111 0.00 0.00 0.00 4.18
304 305 2.710902 GCAAACCCAGGCCGAATCC 61.711 63.158 0.00 0.00 0.00 3.01
305 306 2.885113 GCAAACCCAGGCCGAATC 59.115 61.111 0.00 0.00 0.00 2.52
306 307 3.061848 CGCAAACCCAGGCCGAAT 61.062 61.111 0.00 0.00 0.00 3.34
314 315 4.877619 TTGACGCCCGCAAACCCA 62.878 61.111 0.00 0.00 0.00 4.51
315 316 2.428960 ATTTTGACGCCCGCAAACCC 62.429 55.000 8.84 0.00 35.20 4.11
316 317 0.241481 TATTTTGACGCCCGCAAACC 59.759 50.000 8.84 0.00 35.20 3.27
317 318 1.613270 CTATTTTGACGCCCGCAAAC 58.387 50.000 8.84 0.00 35.20 2.93
318 319 0.523966 CCTATTTTGACGCCCGCAAA 59.476 50.000 6.30 6.30 33.76 3.68
319 320 0.321741 TCCTATTTTGACGCCCGCAA 60.322 50.000 0.00 0.00 0.00 4.85
320 321 1.022451 GTCCTATTTTGACGCCCGCA 61.022 55.000 0.00 0.00 0.00 5.69
321 322 1.712018 GGTCCTATTTTGACGCCCGC 61.712 60.000 0.00 0.00 33.46 6.13
322 323 1.426041 CGGTCCTATTTTGACGCCCG 61.426 60.000 0.00 0.00 33.46 6.13
323 324 0.108041 TCGGTCCTATTTTGACGCCC 60.108 55.000 0.00 0.00 33.46 6.13
324 325 1.395954 GTTCGGTCCTATTTTGACGCC 59.604 52.381 0.00 0.00 33.46 5.68
325 326 2.070783 TGTTCGGTCCTATTTTGACGC 58.929 47.619 0.00 0.00 33.46 5.19
326 327 2.671396 CCTGTTCGGTCCTATTTTGACG 59.329 50.000 0.00 0.00 33.46 4.35
327 328 2.418976 GCCTGTTCGGTCCTATTTTGAC 59.581 50.000 0.00 0.00 34.25 3.18
328 329 2.706890 GCCTGTTCGGTCCTATTTTGA 58.293 47.619 0.00 0.00 34.25 2.69
329 330 1.396996 CGCCTGTTCGGTCCTATTTTG 59.603 52.381 0.00 0.00 34.25 2.44
330 331 1.276989 TCGCCTGTTCGGTCCTATTTT 59.723 47.619 0.00 0.00 34.25 1.82
331 332 0.899720 TCGCCTGTTCGGTCCTATTT 59.100 50.000 0.00 0.00 34.25 1.40
332 333 0.899720 TTCGCCTGTTCGGTCCTATT 59.100 50.000 0.00 0.00 34.25 1.73
333 334 0.899720 TTTCGCCTGTTCGGTCCTAT 59.100 50.000 0.00 0.00 34.25 2.57
334 335 0.680618 TTTTCGCCTGTTCGGTCCTA 59.319 50.000 0.00 0.00 34.25 2.94
335 336 0.036306 ATTTTCGCCTGTTCGGTCCT 59.964 50.000 0.00 0.00 34.25 3.85
336 337 0.879090 AATTTTCGCCTGTTCGGTCC 59.121 50.000 0.00 0.00 34.25 4.46
337 338 1.401018 CCAATTTTCGCCTGTTCGGTC 60.401 52.381 0.00 0.00 34.25 4.79
338 339 0.596082 CCAATTTTCGCCTGTTCGGT 59.404 50.000 0.00 0.00 34.25 4.69
339 340 0.109319 CCCAATTTTCGCCTGTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
340 341 0.732538 GCCCAATTTTCGCCTGTTCG 60.733 55.000 0.00 0.00 0.00 3.95
341 342 0.603065 AGCCCAATTTTCGCCTGTTC 59.397 50.000 0.00 0.00 0.00 3.18
342 343 1.000843 GAAGCCCAATTTTCGCCTGTT 59.999 47.619 0.00 0.00 0.00 3.16
343 344 0.603065 GAAGCCCAATTTTCGCCTGT 59.397 50.000 0.00 0.00 0.00 4.00
344 345 0.890683 AGAAGCCCAATTTTCGCCTG 59.109 50.000 0.00 0.00 0.00 4.85
345 346 0.890683 CAGAAGCCCAATTTTCGCCT 59.109 50.000 0.00 0.00 0.00 5.52
346 347 0.887933 TCAGAAGCCCAATTTTCGCC 59.112 50.000 0.00 0.00 0.00 5.54
347 348 2.723124 TTCAGAAGCCCAATTTTCGC 57.277 45.000 0.00 0.00 0.00 4.70
348 349 2.979813 CGTTTCAGAAGCCCAATTTTCG 59.020 45.455 0.00 0.00 0.00 3.46
349 350 2.731451 GCGTTTCAGAAGCCCAATTTTC 59.269 45.455 0.00 0.00 0.00 2.29
350 351 2.754472 GCGTTTCAGAAGCCCAATTTT 58.246 42.857 0.00 0.00 0.00 1.82
351 352 1.335872 CGCGTTTCAGAAGCCCAATTT 60.336 47.619 0.00 0.00 0.00 1.82
352 353 0.240945 CGCGTTTCAGAAGCCCAATT 59.759 50.000 0.00 0.00 0.00 2.32
353 354 1.586154 CCGCGTTTCAGAAGCCCAAT 61.586 55.000 4.92 0.00 0.00 3.16
354 355 2.258013 CCGCGTTTCAGAAGCCCAA 61.258 57.895 4.92 0.00 0.00 4.12
355 356 2.668212 CCGCGTTTCAGAAGCCCA 60.668 61.111 4.92 0.00 0.00 5.36
356 357 2.258726 AACCGCGTTTCAGAAGCCC 61.259 57.895 4.92 0.00 0.00 5.19
357 358 1.082104 CAACCGCGTTTCAGAAGCC 60.082 57.895 4.92 0.00 0.00 4.35
358 359 1.082104 CCAACCGCGTTTCAGAAGC 60.082 57.895 4.92 0.00 0.00 3.86
359 360 1.574428 CCCAACCGCGTTTCAGAAG 59.426 57.895 4.92 0.00 0.00 2.85
360 361 2.548295 GCCCAACCGCGTTTCAGAA 61.548 57.895 4.92 0.00 0.00 3.02
361 362 2.975799 GCCCAACCGCGTTTCAGA 60.976 61.111 4.92 0.00 0.00 3.27
362 363 4.038080 GGCCCAACCGCGTTTCAG 62.038 66.667 4.92 0.00 0.00 3.02
371 372 4.880899 CGAAAATTCGGCCCAACC 57.119 55.556 7.64 0.00 46.30 3.77
380 381 0.371301 GTCGCCGGTACCGAAAATTC 59.629 55.000 35.41 15.60 42.83 2.17
381 382 1.020861 GGTCGCCGGTACCGAAAATT 61.021 55.000 35.41 0.00 42.83 1.82
382 383 1.448365 GGTCGCCGGTACCGAAAAT 60.448 57.895 35.41 0.00 42.83 1.82
383 384 2.048316 GGTCGCCGGTACCGAAAA 60.048 61.111 35.41 16.46 42.83 2.29
384 385 2.374830 TTTGGTCGCCGGTACCGAAA 62.375 55.000 35.41 22.14 42.83 3.46
385 386 2.374830 TTTTGGTCGCCGGTACCGAA 62.375 55.000 35.41 20.80 42.83 4.30
386 387 2.768503 CTTTTGGTCGCCGGTACCGA 62.769 60.000 35.41 13.44 42.83 4.69
387 388 2.357275 TTTTGGTCGCCGGTACCG 60.357 61.111 27.68 27.68 40.08 4.02
388 389 0.603439 TTCTTTTGGTCGCCGGTACC 60.603 55.000 18.28 18.28 37.53 3.34
389 390 1.228533 TTTCTTTTGGTCGCCGGTAC 58.771 50.000 1.90 1.25 0.00 3.34
390 391 1.964552 TTTTCTTTTGGTCGCCGGTA 58.035 45.000 1.90 0.00 0.00 4.02
391 392 1.066454 CTTTTTCTTTTGGTCGCCGGT 59.934 47.619 1.90 0.00 0.00 5.28
392 393 1.601914 CCTTTTTCTTTTGGTCGCCGG 60.602 52.381 0.00 0.00 0.00 6.13
393 394 1.766069 CCTTTTTCTTTTGGTCGCCG 58.234 50.000 0.00 0.00 0.00 6.46
394 395 1.497991 GCCTTTTTCTTTTGGTCGCC 58.502 50.000 0.00 0.00 0.00 5.54
395 396 1.497991 GGCCTTTTTCTTTTGGTCGC 58.502 50.000 0.00 0.00 0.00 5.19
396 397 1.601914 CGGGCCTTTTTCTTTTGGTCG 60.602 52.381 0.84 0.00 0.00 4.79
397 398 1.270094 CCGGGCCTTTTTCTTTTGGTC 60.270 52.381 0.84 0.00 0.00 4.02
398 399 0.756294 CCGGGCCTTTTTCTTTTGGT 59.244 50.000 0.84 0.00 0.00 3.67
399 400 0.602638 GCCGGGCCTTTTTCTTTTGG 60.603 55.000 8.12 0.00 0.00 3.28
400 401 0.943835 CGCCGGGCCTTTTTCTTTTG 60.944 55.000 14.55 0.00 0.00 2.44
401 402 1.365999 CGCCGGGCCTTTTTCTTTT 59.634 52.632 14.55 0.00 0.00 2.27
402 403 2.570284 CCGCCGGGCCTTTTTCTTT 61.570 57.895 14.55 0.00 0.00 2.52
403 404 2.989253 CCGCCGGGCCTTTTTCTT 60.989 61.111 14.55 0.00 0.00 2.52
418 419 3.550431 ATCTCCGGTCATGCCCCG 61.550 66.667 14.57 14.57 45.07 5.73
419 420 2.111878 CATCTCCGGTCATGCCCC 59.888 66.667 0.00 0.00 0.00 5.80
420 421 2.592861 GCATCTCCGGTCATGCCC 60.593 66.667 22.50 4.01 39.70 5.36
421 422 1.596477 GAGCATCTCCGGTCATGCC 60.596 63.158 26.69 18.28 45.63 4.40
422 423 4.040068 GAGCATCTCCGGTCATGC 57.960 61.111 24.45 24.45 44.96 4.06
433 434 4.098196 ACTTACTTCTCCCGTTAGAGCATC 59.902 45.833 0.00 0.00 33.66 3.91
434 435 4.024670 ACTTACTTCTCCCGTTAGAGCAT 58.975 43.478 0.00 0.00 33.66 3.79
435 436 3.428532 ACTTACTTCTCCCGTTAGAGCA 58.571 45.455 0.00 0.00 33.66 4.26
436 437 4.036616 CCTACTTACTTCTCCCGTTAGAGC 59.963 50.000 0.00 0.00 33.66 4.09
437 438 5.435291 TCCTACTTACTTCTCCCGTTAGAG 58.565 45.833 0.00 0.00 35.04 2.43
438 439 5.435291 CTCCTACTTACTTCTCCCGTTAGA 58.565 45.833 0.00 0.00 0.00 2.10
439 440 4.579753 CCTCCTACTTACTTCTCCCGTTAG 59.420 50.000 0.00 0.00 0.00 2.34
440 441 4.530875 CCTCCTACTTACTTCTCCCGTTA 58.469 47.826 0.00 0.00 0.00 3.18
573 583 2.048127 GACCTCGCGCTTCTTGGT 60.048 61.111 5.56 6.09 0.00 3.67
759 772 1.490693 CTCGCCGGACGGATCAATTG 61.491 60.000 15.99 0.00 43.89 2.32
821 834 1.079750 GAAGAGACGCGGAAAGGCT 60.080 57.895 12.47 0.00 0.00 4.58
969 982 1.694169 TCTCCAGGGAGGGATTGCC 60.694 63.158 15.08 0.00 42.20 4.52
989 1003 4.519437 TGCTCATCGCCTCGGCTG 62.519 66.667 6.35 0.00 39.32 4.85
1025 1039 3.736100 CCTCCGCGCATTGCAACA 61.736 61.111 8.75 0.00 46.97 3.33
1219 1233 2.520741 GGAGGAGGAGGCCGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
1257 1277 2.284405 CTGTACGGGTCTGGGGGT 60.284 66.667 0.00 0.00 0.00 4.95
1262 1282 3.841643 ACGTATTTTCTGTACGGGTCTG 58.158 45.455 0.85 0.00 46.70 3.51
1278 1298 1.743995 GGCCTGCGGTGAAACGTAT 60.744 57.895 0.00 0.00 38.12 3.06
1291 1311 2.106683 GGGATGTTTCGACGGCCTG 61.107 63.158 0.00 0.00 0.00 4.85
1338 1358 0.550147 TCTTCTTCCCCTTCCCCCAG 60.550 60.000 0.00 0.00 0.00 4.45
1339 1359 0.103608 TTCTTCTTCCCCTTCCCCCA 60.104 55.000 0.00 0.00 0.00 4.96
1367 1387 6.836007 GGAATTCCCAACCTTTATCTTGATCT 59.164 38.462 14.03 0.00 34.14 2.75
1428 1448 1.065491 ACAACTGTCCTTGACACTGCA 60.065 47.619 0.00 0.00 37.67 4.41
1477 1497 1.586422 CCATTACTGCCGACCATCAG 58.414 55.000 0.00 0.00 36.45 2.90
1491 1511 3.181445 CCTCCGTGGATGAATTCCCATTA 60.181 47.826 2.27 0.00 44.77 1.90
1506 1526 0.105964 TGGACTCAAACACCTCCGTG 59.894 55.000 0.00 0.00 46.11 4.94
1551 1571 0.318614 CAAAGTTGCCGCGGAACAAT 60.319 50.000 33.48 18.57 0.00 2.71
1566 1586 5.015733 GCGACTCGAATGACATTAACAAAG 58.984 41.667 1.63 0.00 0.00 2.77
1803 1832 6.631016 TGATCTAGAACAAGTGACGCTTAAT 58.369 36.000 0.00 0.00 35.27 1.40
1820 1849 2.093973 ACAGAAACGGGCACTGATCTAG 60.094 50.000 0.00 0.00 38.67 2.43
1823 1852 1.079503 GACAGAAACGGGCACTGATC 58.920 55.000 0.00 0.00 38.67 2.92
1831 1860 1.263217 CGAAACTTGGACAGAAACGGG 59.737 52.381 0.00 0.00 0.00 5.28
1970 2021 6.600032 ACTTCTCAGTGATCACTAATACGACT 59.400 38.462 27.44 0.00 40.20 4.18
1981 2032 3.056250 GCTCTTGGACTTCTCAGTGATCA 60.056 47.826 0.00 0.00 31.22 2.92
1982 2033 3.195396 AGCTCTTGGACTTCTCAGTGATC 59.805 47.826 0.00 0.00 31.22 2.92
2125 2177 8.038492 AGCTCTTCTGAAACAAATACTGAATC 57.962 34.615 0.00 0.00 0.00 2.52
2137 2189 4.999751 ATCACGAAAGCTCTTCTGAAAC 57.000 40.909 0.00 0.00 0.00 2.78
2153 2205 9.840427 AACTGAAATAAAAATTCTGGTATCACG 57.160 29.630 0.00 0.00 32.08 4.35
2269 2321 7.013464 TGTTTTCATTGGGTAAACTACAACGAT 59.987 33.333 0.00 0.00 33.92 3.73
2538 2617 9.407380 ACATATAACACTTCAGGCATGAAAATA 57.593 29.630 15.48 8.31 44.68 1.40
2599 2678 5.664457 TGAACAGATTGATTAGACTGCGAT 58.336 37.500 0.00 0.00 34.25 4.58
2772 2921 0.105408 AGGCAAAAGGCTGCAACAAG 59.895 50.000 0.50 0.00 44.52 3.16
2783 2932 6.500684 TCTTAGCTGTATCAAAGGCAAAAG 57.499 37.500 0.00 0.00 0.00 2.27
2846 2995 2.239907 GCCACTAGTGAAGGAGGGATTT 59.760 50.000 24.68 0.00 0.00 2.17
2951 3100 4.491676 TCCAGACAGTTCTTGCGTAATAC 58.508 43.478 0.00 0.00 0.00 1.89
3179 3328 3.369052 CCTTCTTAAGGGTGTCATACGCA 60.369 47.826 1.85 0.00 45.27 5.24
3338 3490 1.868713 TCTTGTATACCTTCCGGCCA 58.131 50.000 2.24 0.00 0.00 5.36
3612 3764 1.749033 GAGCCCTCGTATCTTGGGG 59.251 63.158 0.00 0.00 41.19 4.96
3623 3775 4.430765 TCGCGAAACCGAGCCCTC 62.431 66.667 6.20 0.00 32.74 4.30
3700 3854 7.333528 AGAGTTTGAAATCTTGTAGCAACAA 57.666 32.000 0.00 0.00 43.32 2.83
3750 3904 8.752254 GCAAACTGGAAACTTATGTAACTTTTC 58.248 33.333 0.00 0.00 0.00 2.29
3763 3917 2.745968 TCCCAAAGCAAACTGGAAACT 58.254 42.857 0.00 0.00 34.35 2.66
3985 4148 7.954788 ATTTAAGTGTCACTCTTGAAGACTC 57.045 36.000 5.82 0.00 31.90 3.36
3993 4156 6.529220 AGCTGAGAATTTAAGTGTCACTCTT 58.471 36.000 5.82 0.00 0.00 2.85
3998 4161 5.180117 GCAAGAGCTGAGAATTTAAGTGTCA 59.820 40.000 0.00 0.00 37.91 3.58
4121 4284 5.112220 TGTGTTCAGTTCTTGATCAATGC 57.888 39.130 8.96 2.47 37.28 3.56
4145 4308 1.133199 AGGGCGAGAGAGAGGATGAAT 60.133 52.381 0.00 0.00 0.00 2.57
4357 4520 9.218525 GGGATAGGGAAAGATATCATTCAGATA 57.781 37.037 19.34 10.55 43.11 1.98
4358 4521 7.911106 AGGGATAGGGAAAGATATCATTCAGAT 59.089 37.037 19.34 10.54 40.86 2.90
4359 4522 7.259391 AGGGATAGGGAAAGATATCATTCAGA 58.741 38.462 19.34 6.87 31.29 3.27
4360 4523 7.507797 AGGGATAGGGAAAGATATCATTCAG 57.492 40.000 19.34 0.00 31.29 3.02
4361 4524 9.218525 GATAGGGATAGGGAAAGATATCATTCA 57.781 37.037 19.34 3.03 31.29 2.57
4362 4525 8.655901 GGATAGGGATAGGGAAAGATATCATTC 58.344 40.741 11.42 11.42 31.29 2.67
4363 4526 7.574372 GGGATAGGGATAGGGAAAGATATCATT 59.426 40.741 5.32 0.00 31.29 2.57
4364 4527 7.085601 GGGATAGGGATAGGGAAAGATATCAT 58.914 42.308 5.32 0.00 31.29 2.45
4365 4528 6.224849 AGGGATAGGGATAGGGAAAGATATCA 59.775 42.308 5.32 0.00 31.29 2.15
4366 4529 6.698670 AGGGATAGGGATAGGGAAAGATATC 58.301 44.000 0.00 0.00 0.00 1.63
4367 4530 6.715353 AGGGATAGGGATAGGGAAAGATAT 57.285 41.667 0.00 0.00 0.00 1.63
4368 4531 7.146741 GGATAGGGATAGGGATAGGGAAAGATA 60.147 44.444 0.00 0.00 0.00 1.98
4369 4532 6.357063 GGATAGGGATAGGGATAGGGAAAGAT 60.357 46.154 0.00 0.00 0.00 2.40
4370 4533 5.042523 GGATAGGGATAGGGATAGGGAAAGA 60.043 48.000 0.00 0.00 0.00 2.52
4371 4534 5.220521 GGATAGGGATAGGGATAGGGAAAG 58.779 50.000 0.00 0.00 0.00 2.62
4372 4535 4.014593 GGGATAGGGATAGGGATAGGGAAA 60.015 50.000 0.00 0.00 0.00 3.13
4373 4536 3.540687 GGGATAGGGATAGGGATAGGGAA 59.459 52.174 0.00 0.00 0.00 3.97
4374 4537 3.148331 GGGATAGGGATAGGGATAGGGA 58.852 54.545 0.00 0.00 0.00 4.20
4375 4538 3.151634 AGGGATAGGGATAGGGATAGGG 58.848 54.545 0.00 0.00 0.00 3.53
4376 4539 5.016890 GGATAGGGATAGGGATAGGGATAGG 59.983 52.000 0.00 0.00 0.00 2.57
4377 4540 5.016890 GGGATAGGGATAGGGATAGGGATAG 59.983 52.000 0.00 0.00 0.00 2.08
4378 4541 4.933296 GGGATAGGGATAGGGATAGGGATA 59.067 50.000 0.00 0.00 0.00 2.59
4379 4542 3.740889 GGGATAGGGATAGGGATAGGGAT 59.259 52.174 0.00 0.00 0.00 3.85
4380 4543 3.148331 GGGATAGGGATAGGGATAGGGA 58.852 54.545 0.00 0.00 0.00 4.20
4381 4544 3.151634 AGGGATAGGGATAGGGATAGGG 58.848 54.545 0.00 0.00 0.00 3.53
4382 4545 7.872008 ATATAGGGATAGGGATAGGGATAGG 57.128 44.000 0.00 0.00 0.00 2.57
4463 4626 3.303495 CGTACGACCAGAAGCACTAATTG 59.697 47.826 10.44 0.00 0.00 2.32
4464 4627 3.057033 ACGTACGACCAGAAGCACTAATT 60.057 43.478 24.41 0.00 0.00 1.40
4465 4628 2.490903 ACGTACGACCAGAAGCACTAAT 59.509 45.455 24.41 0.00 0.00 1.73
4466 4629 1.881973 ACGTACGACCAGAAGCACTAA 59.118 47.619 24.41 0.00 0.00 2.24
4467 4630 1.466167 GACGTACGACCAGAAGCACTA 59.534 52.381 24.41 0.00 0.00 2.74
4468 4631 0.240411 GACGTACGACCAGAAGCACT 59.760 55.000 24.41 0.00 0.00 4.40
4469 4632 1.063951 CGACGTACGACCAGAAGCAC 61.064 60.000 24.41 0.00 45.77 4.40
4470 4633 1.208358 CGACGTACGACCAGAAGCA 59.792 57.895 24.41 0.00 45.77 3.91
4471 4634 0.792356 GACGACGTACGACCAGAAGC 60.792 60.000 24.41 0.00 45.77 3.86
4472 4635 0.517946 CGACGACGTACGACCAGAAG 60.518 60.000 24.41 5.15 45.77 2.85
4473 4636 1.492873 CGACGACGTACGACCAGAA 59.507 57.895 24.41 0.00 45.77 3.02
4474 4637 3.015293 GCGACGACGTACGACCAGA 62.015 63.158 24.41 0.00 45.77 3.86
4475 4638 2.572647 GCGACGACGTACGACCAG 60.573 66.667 24.41 11.88 45.77 4.00
4476 4639 4.088762 GGCGACGACGTACGACCA 62.089 66.667 24.41 0.00 45.77 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.