Multiple sequence alignment - TraesCS1B01G135100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G135100 chr1B 100.000 5744 0 0 1 5744 172000487 172006230 0.000000e+00 10608.0
1 TraesCS1B01G135100 chr1B 93.443 61 4 0 3075 3135 548613313 548613253 2.200000e-14 91.6
2 TraesCS1B01G135100 chr1B 84.270 89 12 2 3075 3161 341935839 341935927 1.030000e-12 86.1
3 TraesCS1B01G135100 chr1B 80.612 98 14 5 2557 2652 396845736 396845642 2.870000e-08 71.3
4 TraesCS1B01G135100 chr1B 95.238 42 2 0 3244 3285 82298999 82298958 3.710000e-07 67.6
5 TraesCS1B01G135100 chr1B 92.857 42 3 0 3244 3285 32687729 32687688 1.730000e-05 62.1
6 TraesCS1B01G135100 chr1B 92.857 42 3 0 3244 3285 466781056 466781015 1.730000e-05 62.1
7 TraesCS1B01G135100 chr1A 92.984 4119 194 54 1681 5744 119704647 119708725 0.000000e+00 5917.0
8 TraesCS1B01G135100 chr1A 91.064 1231 52 27 472 1679 119703242 119704437 0.000000e+00 1611.0
9 TraesCS1B01G135100 chr1A 84.740 308 25 10 463 755 119629370 119629670 7.280000e-74 289.0
10 TraesCS1B01G135100 chr1A 78.086 397 67 15 2557 2938 566120259 566120650 3.460000e-57 233.0
11 TraesCS1B01G135100 chr1A 77.676 327 37 16 1867 2184 33898278 33898577 3.560000e-37 167.0
12 TraesCS1B01G135100 chr1A 84.302 172 11 15 281 440 403169689 403169522 2.770000e-33 154.0
13 TraesCS1B01G135100 chr1A 77.564 156 32 3 3075 3228 547319808 547319654 2.200000e-14 91.6
14 TraesCS1B01G135100 chr1A 76.271 177 34 7 3067 3237 574507174 574507000 2.850000e-13 87.9
15 TraesCS1B01G135100 chr1A 83.333 78 13 0 3153 3230 7023782 7023859 7.980000e-09 73.1
16 TraesCS1B01G135100 chr1A 86.885 61 8 0 2584 2644 449941877 449941817 1.030000e-07 69.4
17 TraesCS1B01G135100 chr1D 94.044 2955 116 36 2410 5319 112463996 112466935 0.000000e+00 4427.0
18 TraesCS1B01G135100 chr1D 92.314 1210 45 13 486 1679 112461398 112462575 0.000000e+00 1676.0
19 TraesCS1B01G135100 chr1D 95.270 740 28 7 1681 2418 112462783 112463517 0.000000e+00 1166.0
20 TraesCS1B01G135100 chr1D 87.054 448 32 11 5323 5744 112466978 112467425 3.110000e-132 483.0
21 TraesCS1B01G135100 chr1D 86.885 61 8 0 2584 2644 349750704 349750644 1.030000e-07 69.4
22 TraesCS1B01G135100 chr1D 84.615 65 8 1 3045 3107 109820548 109820612 4.800000e-06 63.9
23 TraesCS1B01G135100 chr1D 85.000 60 9 0 3076 3135 403716467 403716526 1.730000e-05 62.1
24 TraesCS1B01G135100 chr1D 97.143 35 1 0 3084 3118 403235046 403235080 6.220000e-05 60.2
25 TraesCS1B01G135100 chr1D 94.595 37 2 0 2608 2644 349748430 349748394 2.240000e-04 58.4
26 TraesCS1B01G135100 chr2D 81.250 672 97 16 3465 4135 57961718 57961075 3.070000e-142 516.0
27 TraesCS1B01G135100 chr2D 82.252 524 66 20 1685 2199 57962439 57961934 1.480000e-115 427.0
28 TraesCS1B01G135100 chr2D 82.456 513 66 19 1713 2217 58756877 58757373 1.480000e-115 427.0
29 TraesCS1B01G135100 chr2D 81.144 472 65 17 4280 4745 58759222 58759675 1.970000e-94 357.0
30 TraesCS1B01G135100 chr2D 88.776 294 29 3 1 290 611504258 611504551 1.970000e-94 357.0
31 TraesCS1B01G135100 chr2D 77.757 535 69 28 1151 1676 58755456 58755949 3.390000e-72 283.0
32 TraesCS1B01G135100 chr2D 77.316 529 67 29 1151 1676 57963849 57963371 4.410000e-66 263.0
33 TraesCS1B01G135100 chr2D 81.090 312 44 13 1885 2191 16844927 16845228 9.620000e-58 235.0
34 TraesCS1B01G135100 chr2D 77.910 335 45 14 1862 2190 86329584 86329273 1.270000e-41 182.0
35 TraesCS1B01G135100 chr2D 92.857 112 7 1 3651 3762 91801331 91801441 1.660000e-35 161.0
36 TraesCS1B01G135100 chr2D 78.339 277 35 10 1867 2138 86155807 86155551 7.710000e-34 156.0
37 TraesCS1B01G135100 chr2D 91.964 112 8 1 3651 3762 105649187 105649077 7.710000e-34 156.0
38 TraesCS1B01G135100 chr2D 78.912 147 23 8 3051 3191 518072818 518072962 6.130000e-15 93.5
39 TraesCS1B01G135100 chr2B 81.440 625 93 15 3509 4132 91231670 91232272 1.860000e-134 490.0
40 TraesCS1B01G135100 chr2B 81.909 503 70 15 1732 2228 91230782 91231269 6.930000e-109 405.0
41 TraesCS1B01G135100 chr2B 80.508 472 68 17 4280 4745 91233316 91233769 1.980000e-89 340.0
42 TraesCS1B01G135100 chr2B 79.779 272 47 7 1151 1419 91226391 91226657 2.110000e-44 191.0
43 TraesCS1B01G135100 chr2B 89.032 155 13 3 223 374 493852805 493852652 7.600000e-44 189.0
44 TraesCS1B01G135100 chr2B 95.050 101 4 1 3651 3751 155887741 155887840 2.140000e-34 158.0
45 TraesCS1B01G135100 chr2B 88.393 112 13 0 2563 2674 444507416 444507305 1.000000e-27 135.0
46 TraesCS1B01G135100 chr2B 81.308 107 18 2 3077 3181 15639315 15639209 1.030000e-12 86.1
47 TraesCS1B01G135100 chr3B 89.116 294 28 3 1 290 642967464 642967757 4.230000e-96 363.0
48 TraesCS1B01G135100 chr3B 92.045 88 5 2 1306 1392 140857527 140857441 7.820000e-24 122.0
49 TraesCS1B01G135100 chr2A 79.962 524 78 20 1685 2199 58868087 58867582 1.520000e-95 361.0
50 TraesCS1B01G135100 chr2A 80.652 460 66 12 4280 4734 58863630 58863189 9.220000e-88 335.0
51 TraesCS1B01G135100 chr2A 86.782 174 22 1 1503 1676 58905666 58905494 5.870000e-45 193.0
52 TraesCS1B01G135100 chr2A 78.799 283 41 16 1151 1427 58905969 58905700 7.650000e-39 172.0
53 TraesCS1B01G135100 chr2A 83.529 170 16 11 281 440 236490521 236490354 1.290000e-31 148.0
54 TraesCS1B01G135100 chr2A 83.529 170 16 11 281 440 373018388 373018221 1.290000e-31 148.0
55 TraesCS1B01G135100 chr2A 73.750 240 48 12 2775 3003 761312551 761312786 4.770000e-11 80.5
56 TraesCS1B01G135100 chr5B 88.776 294 29 3 1 290 27166797 27167090 1.970000e-94 357.0
57 TraesCS1B01G135100 chr5B 88.552 297 27 4 1 290 159526948 159526652 2.550000e-93 353.0
58 TraesCS1B01G135100 chr5B 87.879 297 29 4 1 290 106022591 106022887 5.510000e-90 342.0
59 TraesCS1B01G135100 chr5B 87.755 294 32 3 1 290 396661558 396661851 1.980000e-89 340.0
60 TraesCS1B01G135100 chr5B 78.042 337 37 24 1860 2190 703101406 703101101 1.640000e-40 178.0
61 TraesCS1B01G135100 chr5B 80.769 130 15 9 3058 3181 221907451 221907576 6.130000e-15 93.5
62 TraesCS1B01G135100 chr5B 76.744 172 35 5 3075 3243 548468892 548469061 2.200000e-14 91.6
63 TraesCS1B01G135100 chr5B 77.019 161 33 4 3076 3233 631471264 631471423 7.930000e-14 89.8
64 TraesCS1B01G135100 chr5B 84.810 79 10 2 1318 1395 321559473 321559396 1.720000e-10 78.7
65 TraesCS1B01G135100 chr5B 95.238 42 2 0 3244 3285 31419937 31419896 3.710000e-07 67.6
66 TraesCS1B01G135100 chr5B 95.238 42 2 0 3244 3285 505435658 505435699 3.710000e-07 67.6
67 TraesCS1B01G135100 chr6B 88.435 294 30 3 1 290 411545517 411545810 9.160000e-93 351.0
68 TraesCS1B01G135100 chr6B 80.695 259 33 6 1937 2190 33647222 33646976 9.830000e-43 185.0
69 TraesCS1B01G135100 chr6B 100.000 36 0 0 3244 3279 372578922 372578957 3.710000e-07 67.6
70 TraesCS1B01G135100 chr6B 95.238 42 2 0 3244 3285 448372444 448372485 3.710000e-07 67.6
71 TraesCS1B01G135100 chr4B 88.215 297 28 4 1 290 196378427 196378723 1.180000e-91 348.0
72 TraesCS1B01G135100 chr4B 79.167 336 35 19 1860 2190 617870910 617870605 3.510000e-47 200.0
73 TraesCS1B01G135100 chr4B 88.525 61 5 2 3075 3134 559279864 559279805 7.980000e-09 73.1
74 TraesCS1B01G135100 chr4B 95.238 42 2 0 3244 3285 1075542 1075583 3.710000e-07 67.6
75 TraesCS1B01G135100 chr4B 95.238 42 2 0 3244 3285 97565195 97565154 3.710000e-07 67.6
76 TraesCS1B01G135100 chr4B 84.507 71 7 4 3079 3147 586228686 586228618 3.710000e-07 67.6
77 TraesCS1B01G135100 chr4B 97.222 36 1 0 3244 3279 1750188 1750223 1.730000e-05 62.1
78 TraesCS1B01G135100 chr4B 92.857 42 3 0 3244 3285 122467319 122467278 1.730000e-05 62.1
79 TraesCS1B01G135100 chr4B 94.872 39 2 0 3241 3279 135231627 135231665 1.730000e-05 62.1
80 TraesCS1B01G135100 chr7B 88.095 294 29 5 1 290 397620533 397620824 1.530000e-90 344.0
81 TraesCS1B01G135100 chr7B 78.261 414 66 17 3503 3910 502787776 502787381 1.600000e-60 244.0
82 TraesCS1B01G135100 chr7B 92.857 112 7 1 3651 3762 610324922 610325032 1.660000e-35 161.0
83 TraesCS1B01G135100 chr7B 91.071 112 9 1 3651 3762 146977985 146978095 3.590000e-32 150.0
84 TraesCS1B01G135100 chr7B 89.333 75 8 0 2356 2430 52637003 52636929 1.700000e-15 95.3
85 TraesCS1B01G135100 chr7B 86.207 87 10 2 3246 3331 317794518 317794433 6.130000e-15 93.5
86 TraesCS1B01G135100 chr7B 84.043 94 15 0 2584 2677 495023623 495023716 2.200000e-14 91.6
87 TraesCS1B01G135100 chr7B 78.512 121 21 4 3075 3191 637353409 637353528 2.220000e-09 75.0
88 TraesCS1B01G135100 chr4D 77.183 355 59 14 2356 2703 264491736 264492075 2.730000e-43 187.0
89 TraesCS1B01G135100 chr4D 77.679 336 38 23 1861 2190 462629785 462630089 2.750000e-38 171.0
90 TraesCS1B01G135100 chr4D 79.537 259 36 12 1937 2190 461230278 461230524 9.900000e-38 169.0
91 TraesCS1B01G135100 chr4D 78.764 259 38 12 1937 2190 475143885 475144131 2.140000e-34 158.0
92 TraesCS1B01G135100 chr4D 83.784 74 9 2 3047 3118 42236632 42236704 3.710000e-07 67.6
93 TraesCS1B01G135100 chr4D 97.222 36 1 0 3244 3279 461230521 461230556 1.730000e-05 62.1
94 TraesCS1B01G135100 chr4D 97.222 36 1 0 3244 3279 462630086 462630121 1.730000e-05 62.1
95 TraesCS1B01G135100 chr4D 97.222 36 1 0 3244 3279 475144128 475144163 1.730000e-05 62.1
96 TraesCS1B01G135100 chr3D 77.679 336 36 25 1861 2190 459315140 459315442 9.900000e-38 169.0
97 TraesCS1B01G135100 chr3D 93.182 88 4 2 1306 1392 91225782 91225696 1.680000e-25 128.0
98 TraesCS1B01G135100 chr7D 80.085 236 37 6 3651 3882 22857702 22857473 3.560000e-37 167.0
99 TraesCS1B01G135100 chr7D 87.671 146 12 4 246 387 494609324 494609467 1.280000e-36 165.0
100 TraesCS1B01G135100 chr7D 81.308 107 14 5 3033 3135 194242248 194242144 1.330000e-11 82.4
101 TraesCS1B01G135100 chr7D 81.522 92 15 2 2584 2674 419407740 419407650 2.220000e-09 75.0
102 TraesCS1B01G135100 chr7D 81.915 94 7 8 3031 3118 80280836 80280925 2.870000e-08 71.3
103 TraesCS1B01G135100 chr7D 85.075 67 9 1 3075 3140 386352318 386352252 3.710000e-07 67.6
104 TraesCS1B01G135100 chr7D 85.484 62 7 2 3075 3135 542858092 542858152 4.800000e-06 63.9
105 TraesCS1B01G135100 chr7A 83.333 168 25 3 285 450 91887206 91887040 9.970000e-33 152.0
106 TraesCS1B01G135100 chr7A 83.529 170 16 11 281 440 266615897 266615730 1.290000e-31 148.0
107 TraesCS1B01G135100 chr7A 85.556 90 13 0 2558 2647 156589540 156589451 1.700000e-15 95.3
108 TraesCS1B01G135100 chr3A 83.851 161 20 6 282 439 287329532 287329689 1.290000e-31 148.0
109 TraesCS1B01G135100 chr3A 92.045 88 5 2 1306 1392 107404842 107404756 7.820000e-24 122.0
110 TraesCS1B01G135100 chr3A 82.014 139 23 2 3049 3185 380949871 380950009 3.640000e-22 117.0
111 TraesCS1B01G135100 chr4A 82.759 174 17 12 281 444 543977598 543977768 6.000000e-30 143.0
112 TraesCS1B01G135100 chr4A 78.453 181 34 5 2354 2532 485716911 485716734 4.700000e-21 113.0
113 TraesCS1B01G135100 chr4A 76.159 151 35 1 3079 3228 515881123 515880973 1.720000e-10 78.7
114 TraesCS1B01G135100 chr6D 74.699 332 64 15 2557 2876 420940126 420939803 4.670000e-26 130.0
115 TraesCS1B01G135100 chr6D 78.014 141 27 3 3038 3174 463218378 463218518 1.030000e-12 86.1
116 TraesCS1B01G135100 chr5D 73.219 351 68 18 2557 2895 505805981 505805645 2.830000e-18 104.0
117 TraesCS1B01G135100 chr5D 87.342 79 8 2 1318 1395 283356030 283355953 7.930000e-14 89.8
118 TraesCS1B01G135100 chr5D 97.297 37 1 0 3075 3111 502654253 502654289 4.800000e-06 63.9
119 TraesCS1B01G135100 chr5A 83.784 111 13 4 3031 3138 269281976 269282084 3.660000e-17 100.0
120 TraesCS1B01G135100 chrUn 97.222 36 1 0 3244 3279 47474853 47474888 1.730000e-05 62.1
121 TraesCS1B01G135100 chrUn 97.222 36 1 0 3244 3279 60643018 60642983 1.730000e-05 62.1
122 TraesCS1B01G135100 chrUn 92.857 42 3 0 3244 3285 431647064 431647023 1.730000e-05 62.1
123 TraesCS1B01G135100 chrUn 92.857 42 3 0 3244 3285 465884580 465884539 1.730000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G135100 chr1B 172000487 172006230 5743 False 10608.000000 10608 100.000000 1 5744 1 chr1B.!!$F1 5743
1 TraesCS1B01G135100 chr1A 119703242 119708725 5483 False 3764.000000 5917 92.024000 472 5744 2 chr1A.!!$F5 5272
2 TraesCS1B01G135100 chr1D 112461398 112467425 6027 False 1938.000000 4427 92.170500 486 5744 4 chr1D.!!$F4 5258
3 TraesCS1B01G135100 chr2D 57961075 57963849 2774 True 402.000000 516 80.272667 1151 4135 3 chr2D.!!$R4 2984
4 TraesCS1B01G135100 chr2D 58755456 58759675 4219 False 355.666667 427 80.452333 1151 4745 3 chr2D.!!$F5 3594
5 TraesCS1B01G135100 chr2B 91230782 91233769 2987 False 411.666667 490 81.285667 1732 4745 3 chr2B.!!$F3 3013
6 TraesCS1B01G135100 chr2A 58863189 58868087 4898 True 348.000000 361 80.307000 1685 4734 2 chr2A.!!$R3 3049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 966 0.309922 CCGCGCGAGTAGATTTCCTA 59.690 55.0 34.63 0.0 0.0 2.94 F
1039 1078 0.323908 CTCCTCGTCCCACTCCTCTT 60.324 60.0 0.00 0.0 0.0 2.85 F
2112 3204 0.598065 GTGGAGTTGTGTTGGCATCC 59.402 55.0 0.00 0.0 0.0 3.51 F
2976 4589 0.035317 TGTGAGTGCAGCTAGGGTTG 59.965 55.0 0.00 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 4052 1.982395 CCAGGAGGCAGGTACGTCA 60.982 63.158 0.0 0.0 0.00 4.35 R
2946 4558 1.490490 TGCACTCACATATCCCTTCCC 59.510 52.381 0.0 0.0 0.00 3.97 R
3143 4758 0.038343 CTGGTCAAAAACATGGCCCG 60.038 55.000 0.0 0.0 44.72 6.13 R
4901 9720 0.250727 CGGTCCACCACAACCTTCAT 60.251 55.000 0.0 0.0 35.14 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.986833 TTTGATGACGTGACATAGAATTAAATG 57.013 29.630 0.00 0.00 0.00 2.32
30 31 8.940768 TGATGACGTGACATAGAATTAAATGA 57.059 30.769 0.00 0.00 0.00 2.57
31 32 9.377312 TGATGACGTGACATAGAATTAAATGAA 57.623 29.630 0.00 0.00 0.00 2.57
32 33 9.855361 GATGACGTGACATAGAATTAAATGAAG 57.145 33.333 0.00 0.00 0.00 3.02
33 34 8.996024 TGACGTGACATAGAATTAAATGAAGA 57.004 30.769 0.00 0.00 0.00 2.87
34 35 9.430623 TGACGTGACATAGAATTAAATGAAGAA 57.569 29.630 0.00 0.00 0.00 2.52
48 49 9.972106 ATTAAATGAAGAAAGAGAGGATTGAGT 57.028 29.630 0.00 0.00 0.00 3.41
51 52 9.612066 AAATGAAGAAAGAGAGGATTGAGTATC 57.388 33.333 0.00 0.00 0.00 2.24
134 135 7.421087 AATAAAGTACTACTCCCTCTGTTCC 57.579 40.000 0.00 0.00 0.00 3.62
135 136 4.678538 AAGTACTACTCCCTCTGTTCCT 57.321 45.455 0.00 0.00 0.00 3.36
136 137 5.793034 AAGTACTACTCCCTCTGTTCCTA 57.207 43.478 0.00 0.00 0.00 2.94
137 138 5.793034 AGTACTACTCCCTCTGTTCCTAA 57.207 43.478 0.00 0.00 0.00 2.69
138 139 6.150034 AGTACTACTCCCTCTGTTCCTAAA 57.850 41.667 0.00 0.00 0.00 1.85
139 140 6.743788 AGTACTACTCCCTCTGTTCCTAAAT 58.256 40.000 0.00 0.00 0.00 1.40
140 141 7.880623 AGTACTACTCCCTCTGTTCCTAAATA 58.119 38.462 0.00 0.00 0.00 1.40
141 142 8.512813 AGTACTACTCCCTCTGTTCCTAAATAT 58.487 37.037 0.00 0.00 0.00 1.28
142 143 9.145442 GTACTACTCCCTCTGTTCCTAAATATT 57.855 37.037 0.00 0.00 0.00 1.28
143 144 8.625467 ACTACTCCCTCTGTTCCTAAATATTT 57.375 34.615 5.89 5.89 0.00 1.40
144 145 8.487028 ACTACTCCCTCTGTTCCTAAATATTTG 58.513 37.037 11.05 1.40 0.00 2.32
145 146 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
146 147 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
147 148 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
148 149 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
149 150 8.047310 TCCCTCTGTTCCTAAATATTTGTCTTC 58.953 37.037 11.05 0.32 0.00 2.87
150 151 8.049721 CCCTCTGTTCCTAAATATTTGTCTTCT 58.950 37.037 11.05 0.00 0.00 2.85
166 167 8.964476 TTTGTCTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 36.61 3.16
167 168 7.953158 TGTCTTCTAGAGATTTCAACAAGTG 57.047 36.000 0.00 0.00 36.61 3.16
168 169 7.726216 TGTCTTCTAGAGATTTCAACAAGTGA 58.274 34.615 0.00 0.00 36.61 3.41
169 170 7.653713 TGTCTTCTAGAGATTTCAACAAGTGAC 59.346 37.037 0.00 0.00 34.40 3.67
170 171 7.870445 GTCTTCTAGAGATTTCAACAAGTGACT 59.130 37.037 0.00 0.00 34.40 3.41
171 172 9.078990 TCTTCTAGAGATTTCAACAAGTGACTA 57.921 33.333 0.00 0.00 35.39 2.59
172 173 9.134734 CTTCTAGAGATTTCAACAAGTGACTAC 57.865 37.037 0.00 0.00 35.39 2.73
173 174 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
174 175 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
176 177 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
177 178 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
178 179 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
179 180 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
180 181 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
181 182 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
182 183 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
183 184 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
184 185 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
185 186 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
186 187 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
187 188 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
188 189 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
189 190 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
190 191 5.582269 TGACTACATACAGAGCAAAATGAGC 59.418 40.000 0.00 0.00 0.00 4.26
191 192 4.568359 ACTACATACAGAGCAAAATGAGCG 59.432 41.667 0.00 0.00 37.01 5.03
192 193 3.599343 ACATACAGAGCAAAATGAGCGA 58.401 40.909 0.00 0.00 37.01 4.93
193 194 4.002982 ACATACAGAGCAAAATGAGCGAA 58.997 39.130 0.00 0.00 37.01 4.70
194 195 4.637534 ACATACAGAGCAAAATGAGCGAAT 59.362 37.500 0.00 0.00 37.01 3.34
195 196 3.754188 ACAGAGCAAAATGAGCGAATC 57.246 42.857 0.00 0.00 37.01 2.52
196 197 3.341823 ACAGAGCAAAATGAGCGAATCT 58.658 40.909 0.00 0.00 37.01 2.40
197 198 4.507710 ACAGAGCAAAATGAGCGAATCTA 58.492 39.130 0.00 0.00 37.01 1.98
198 199 5.121811 ACAGAGCAAAATGAGCGAATCTAT 58.878 37.500 0.00 0.00 37.01 1.98
199 200 6.283694 ACAGAGCAAAATGAGCGAATCTATA 58.716 36.000 0.00 0.00 37.01 1.31
200 201 6.201806 ACAGAGCAAAATGAGCGAATCTATAC 59.798 38.462 0.00 0.00 37.01 1.47
201 202 6.423302 CAGAGCAAAATGAGCGAATCTATACT 59.577 38.462 0.00 0.00 37.01 2.12
202 203 6.644592 AGAGCAAAATGAGCGAATCTATACTC 59.355 38.462 0.00 0.00 37.01 2.59
203 204 6.520272 AGCAAAATGAGCGAATCTATACTCT 58.480 36.000 0.00 0.00 37.01 3.24
204 205 7.661968 AGCAAAATGAGCGAATCTATACTCTA 58.338 34.615 0.00 0.00 37.01 2.43
205 206 8.144478 AGCAAAATGAGCGAATCTATACTCTAA 58.856 33.333 0.00 0.00 37.01 2.10
206 207 8.765219 GCAAAATGAGCGAATCTATACTCTAAA 58.235 33.333 0.00 0.00 0.00 1.85
231 232 9.999009 AAATATGTCTATATACGTCCGTATGTG 57.001 33.333 19.58 10.80 40.98 3.21
232 233 5.868043 TGTCTATATACGTCCGTATGTGG 57.132 43.478 19.58 15.47 40.98 4.17
233 234 5.308014 TGTCTATATACGTCCGTATGTGGT 58.692 41.667 19.58 7.88 40.98 4.16
234 235 5.179929 TGTCTATATACGTCCGTATGTGGTG 59.820 44.000 19.58 9.80 40.98 4.17
235 236 5.180117 GTCTATATACGTCCGTATGTGGTGT 59.820 44.000 19.58 0.00 40.98 4.16
236 237 2.857592 ATACGTCCGTATGTGGTGTC 57.142 50.000 11.25 0.00 39.56 3.67
237 238 1.825090 TACGTCCGTATGTGGTGTCT 58.175 50.000 0.00 0.00 0.00 3.41
238 239 1.825090 ACGTCCGTATGTGGTGTCTA 58.175 50.000 0.00 0.00 0.00 2.59
239 240 2.372264 ACGTCCGTATGTGGTGTCTAT 58.628 47.619 0.00 0.00 0.00 1.98
240 241 2.756760 ACGTCCGTATGTGGTGTCTATT 59.243 45.455 0.00 0.00 0.00 1.73
241 242 3.181493 ACGTCCGTATGTGGTGTCTATTC 60.181 47.826 0.00 0.00 0.00 1.75
242 243 3.369385 GTCCGTATGTGGTGTCTATTCG 58.631 50.000 0.00 0.00 0.00 3.34
243 244 3.065786 GTCCGTATGTGGTGTCTATTCGA 59.934 47.826 0.00 0.00 0.00 3.71
244 245 3.695556 TCCGTATGTGGTGTCTATTCGAA 59.304 43.478 0.00 0.00 0.00 3.71
245 246 4.158209 TCCGTATGTGGTGTCTATTCGAAA 59.842 41.667 0.00 0.00 0.00 3.46
246 247 5.047847 CCGTATGTGGTGTCTATTCGAAAT 58.952 41.667 0.00 0.00 0.00 2.17
247 248 5.175126 CCGTATGTGGTGTCTATTCGAAATC 59.825 44.000 0.00 0.00 0.00 2.17
248 249 5.977725 CGTATGTGGTGTCTATTCGAAATCT 59.022 40.000 0.00 0.00 0.00 2.40
249 250 6.142480 CGTATGTGGTGTCTATTCGAAATCTC 59.858 42.308 0.00 0.00 0.00 2.75
250 251 5.661056 TGTGGTGTCTATTCGAAATCTCT 57.339 39.130 0.00 0.00 0.00 3.10
251 252 5.410924 TGTGGTGTCTATTCGAAATCTCTG 58.589 41.667 0.00 0.00 0.00 3.35
252 253 5.185056 TGTGGTGTCTATTCGAAATCTCTGA 59.815 40.000 0.00 0.00 0.00 3.27
253 254 6.100004 GTGGTGTCTATTCGAAATCTCTGAA 58.900 40.000 0.00 0.00 0.00 3.02
254 255 6.590292 GTGGTGTCTATTCGAAATCTCTGAAA 59.410 38.462 0.00 0.00 0.00 2.69
255 256 7.117812 GTGGTGTCTATTCGAAATCTCTGAAAA 59.882 37.037 0.00 0.00 0.00 2.29
256 257 7.659799 TGGTGTCTATTCGAAATCTCTGAAAAA 59.340 33.333 0.00 0.00 0.00 1.94
277 278 6.668133 AAAACATATTTAGGAAGGGAGGGA 57.332 37.500 0.00 0.00 0.00 4.20
278 279 5.913946 AACATATTTAGGAAGGGAGGGAG 57.086 43.478 0.00 0.00 0.00 4.30
279 280 4.909284 ACATATTTAGGAAGGGAGGGAGT 58.091 43.478 0.00 0.00 0.00 3.85
280 281 6.051946 ACATATTTAGGAAGGGAGGGAGTA 57.948 41.667 0.00 0.00 0.00 2.59
281 282 6.644882 ACATATTTAGGAAGGGAGGGAGTAT 58.355 40.000 0.00 0.00 0.00 2.12
282 283 7.786968 ACATATTTAGGAAGGGAGGGAGTATA 58.213 38.462 0.00 0.00 0.00 1.47
283 284 8.418643 ACATATTTAGGAAGGGAGGGAGTATAT 58.581 37.037 0.00 0.00 0.00 0.86
284 285 8.709308 CATATTTAGGAAGGGAGGGAGTATATG 58.291 40.741 0.00 0.00 0.00 1.78
285 286 5.961399 TTAGGAAGGGAGGGAGTATATGA 57.039 43.478 0.00 0.00 0.00 2.15
286 287 6.500490 TTAGGAAGGGAGGGAGTATATGAT 57.500 41.667 0.00 0.00 0.00 2.45
287 288 7.614473 TTAGGAAGGGAGGGAGTATATGATA 57.386 40.000 0.00 0.00 0.00 2.15
288 289 5.844601 AGGAAGGGAGGGAGTATATGATAC 58.155 45.833 0.00 0.00 0.00 2.24
289 290 5.561967 AGGAAGGGAGGGAGTATATGATACT 59.438 44.000 0.00 0.00 0.00 2.12
290 291 5.894964 GGAAGGGAGGGAGTATATGATACTC 59.105 48.000 15.37 15.37 42.28 2.59
300 301 7.934855 GAGTATATGATACTCCCTCCGTAAA 57.065 40.000 13.45 0.00 38.33 2.01
301 302 7.700022 AGTATATGATACTCCCTCCGTAAAC 57.300 40.000 0.00 0.00 0.00 2.01
302 303 7.468496 AGTATATGATACTCCCTCCGTAAACT 58.532 38.462 0.00 0.00 0.00 2.66
303 304 8.609483 AGTATATGATACTCCCTCCGTAAACTA 58.391 37.037 0.00 0.00 0.00 2.24
304 305 9.236006 GTATATGATACTCCCTCCGTAAACTAA 57.764 37.037 0.00 0.00 0.00 2.24
305 306 8.896722 ATATGATACTCCCTCCGTAAACTAAT 57.103 34.615 0.00 0.00 0.00 1.73
306 307 9.986157 ATATGATACTCCCTCCGTAAACTAATA 57.014 33.333 0.00 0.00 0.00 0.98
307 308 8.896722 ATGATACTCCCTCCGTAAACTAATAT 57.103 34.615 0.00 0.00 0.00 1.28
308 309 9.986157 ATGATACTCCCTCCGTAAACTAATATA 57.014 33.333 0.00 0.00 0.00 0.86
309 310 9.812347 TGATACTCCCTCCGTAAACTAATATAA 57.188 33.333 0.00 0.00 0.00 0.98
312 313 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
313 314 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
314 315 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
315 316 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
316 317 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
317 318 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
318 319 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
319 320 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
320 321 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
365 366 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
366 367 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
367 368 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
368 369 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
369 370 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
377 378 9.710818 ATTAGTTTACAGAGGGAGTACTAATCA 57.289 33.333 0.00 0.00 0.00 2.57
378 379 9.710818 TTAGTTTACAGAGGGAGTACTAATCAT 57.289 33.333 0.00 0.00 0.00 2.45
380 381 9.710818 AGTTTACAGAGGGAGTACTAATCATAA 57.289 33.333 0.00 0.00 0.00 1.90
430 431 9.520204 TCATACACTAATATCATATGCGTGATG 57.480 33.333 11.60 10.46 39.13 3.07
431 432 6.653273 ACACTAATATCATATGCGTGATGC 57.347 37.500 11.60 0.00 46.70 3.91
432 433 6.401394 ACACTAATATCATATGCGTGATGCT 58.599 36.000 11.60 0.60 46.63 3.79
433 434 7.547227 ACACTAATATCATATGCGTGATGCTA 58.453 34.615 11.60 0.00 46.63 3.49
434 435 8.034804 ACACTAATATCATATGCGTGATGCTAA 58.965 33.333 11.60 0.00 46.63 3.09
435 436 9.038803 CACTAATATCATATGCGTGATGCTAAT 57.961 33.333 0.00 0.00 46.63 1.73
442 443 9.939802 ATCATATGCGTGATGCTAATATATGAT 57.060 29.630 17.53 17.53 43.48 2.45
447 448 8.634475 TGCGTGATGCTAATATATGATACTTC 57.366 34.615 0.00 0.00 46.63 3.01
448 449 7.706607 TGCGTGATGCTAATATATGATACTTCC 59.293 37.037 0.00 0.00 46.63 3.46
449 450 7.169982 GCGTGATGCTAATATATGATACTTCCC 59.830 40.741 0.00 0.00 41.73 3.97
450 451 7.379797 CGTGATGCTAATATATGATACTTCCCG 59.620 40.741 0.00 0.00 0.00 5.14
451 452 8.198109 GTGATGCTAATATATGATACTTCCCGT 58.802 37.037 0.00 0.00 0.00 5.28
452 453 8.758829 TGATGCTAATATATGATACTTCCCGTT 58.241 33.333 0.00 0.00 0.00 4.44
460 461 9.720769 ATATATGATACTTCCCGTTAAAACCAG 57.279 33.333 0.00 0.00 0.00 4.00
461 462 4.581868 TGATACTTCCCGTTAAAACCAGG 58.418 43.478 0.00 0.00 0.00 4.45
462 463 4.041938 TGATACTTCCCGTTAAAACCAGGT 59.958 41.667 0.00 0.00 0.00 4.00
463 464 3.301794 ACTTCCCGTTAAAACCAGGTT 57.698 42.857 0.00 0.00 0.00 3.50
464 465 2.953648 ACTTCCCGTTAAAACCAGGTTG 59.046 45.455 5.30 0.00 0.00 3.77
465 466 3.215975 CTTCCCGTTAAAACCAGGTTGA 58.784 45.455 5.30 0.00 0.00 3.18
466 467 2.574450 TCCCGTTAAAACCAGGTTGAC 58.426 47.619 5.30 4.73 0.00 3.18
467 468 2.092538 TCCCGTTAAAACCAGGTTGACA 60.093 45.455 5.30 0.00 0.00 3.58
468 469 2.888414 CCCGTTAAAACCAGGTTGACAT 59.112 45.455 5.30 0.00 0.00 3.06
469 470 3.305064 CCCGTTAAAACCAGGTTGACATG 60.305 47.826 5.30 0.00 0.00 3.21
470 471 3.305110 CGTTAAAACCAGGTTGACATGC 58.695 45.455 5.30 0.00 0.00 4.06
480 481 2.579657 TTGACATGCCCTCCGACGT 61.580 57.895 0.00 0.00 0.00 4.34
530 532 5.467035 TCCATGGTGGAATTTCAGTTTTC 57.533 39.130 12.58 0.00 45.00 2.29
531 533 5.147032 TCCATGGTGGAATTTCAGTTTTCT 58.853 37.500 12.58 0.00 45.00 2.52
532 534 5.010922 TCCATGGTGGAATTTCAGTTTTCTG 59.989 40.000 12.58 0.00 45.00 3.02
533 535 4.935352 TGGTGGAATTTCAGTTTTCTGG 57.065 40.909 0.00 0.00 46.94 3.86
546 550 4.098501 CAGTTTTCTGGAAAAAGGAGCAGT 59.901 41.667 9.65 0.00 43.61 4.40
555 559 5.891551 TGGAAAAAGGAGCAGTAGAAAGTTT 59.108 36.000 0.00 0.00 0.00 2.66
597 601 0.458025 GAGAAAACCCGAGCGACGAT 60.458 55.000 0.00 0.00 45.77 3.73
700 729 4.083862 GCGGCCCTCCTCGTCTTT 62.084 66.667 0.00 0.00 0.00 2.52
701 730 2.718073 GCGGCCCTCCTCGTCTTTA 61.718 63.158 0.00 0.00 0.00 1.85
702 731 1.141234 CGGCCCTCCTCGTCTTTAC 59.859 63.158 0.00 0.00 0.00 2.01
703 732 1.521141 GGCCCTCCTCGTCTTTACC 59.479 63.158 0.00 0.00 0.00 2.85
704 733 1.521141 GCCCTCCTCGTCTTTACCC 59.479 63.158 0.00 0.00 0.00 3.69
705 734 1.969200 GCCCTCCTCGTCTTTACCCC 61.969 65.000 0.00 0.00 0.00 4.95
706 735 1.673808 CCCTCCTCGTCTTTACCCCG 61.674 65.000 0.00 0.00 0.00 5.73
711 740 1.304713 TCGTCTTTACCCCGCTCCT 60.305 57.895 0.00 0.00 0.00 3.69
779 808 4.426112 CGCAGCGAGAGGAGCACA 62.426 66.667 9.98 0.00 37.01 4.57
887 916 0.953471 CCTCCGCATTTCCAACGACA 60.953 55.000 0.00 0.00 0.00 4.35
894 923 1.603802 CATTTCCAACGACAGCACAGT 59.396 47.619 0.00 0.00 0.00 3.55
931 966 0.309922 CCGCGCGAGTAGATTTCCTA 59.690 55.000 34.63 0.00 0.00 2.94
1039 1078 0.323908 CTCCTCGTCCCACTCCTCTT 60.324 60.000 0.00 0.00 0.00 2.85
1430 1469 8.122481 ACATTTATTTCCCCTTTCTTCCTGTAT 58.878 33.333 0.00 0.00 0.00 2.29
1431 1470 9.640952 CATTTATTTCCCCTTTCTTCCTGTATA 57.359 33.333 0.00 0.00 0.00 1.47
1432 1471 9.868160 ATTTATTTCCCCTTTCTTCCTGTATAG 57.132 33.333 0.00 0.00 0.00 1.31
1433 1472 5.710409 TTTCCCCTTTCTTCCTGTATAGG 57.290 43.478 0.00 0.00 46.06 2.57
1434 1473 3.665443 TCCCCTTTCTTCCTGTATAGGG 58.335 50.000 5.59 0.00 44.70 3.53
1435 1474 3.014807 TCCCCTTTCTTCCTGTATAGGGT 59.985 47.826 5.59 0.00 44.70 4.34
1436 1475 3.786450 CCCCTTTCTTCCTGTATAGGGTT 59.214 47.826 5.59 0.00 44.70 4.11
1498 1538 1.881973 TCTTCCTTTGCATGTGACTGC 59.118 47.619 0.00 1.00 42.62 4.40
1499 1539 1.884579 CTTCCTTTGCATGTGACTGCT 59.115 47.619 8.13 0.00 42.75 4.24
1500 1540 1.241165 TCCTTTGCATGTGACTGCTG 58.759 50.000 8.13 0.00 42.75 4.41
1501 1541 1.202794 TCCTTTGCATGTGACTGCTGA 60.203 47.619 0.00 0.00 42.75 4.26
1502 1542 1.816835 CCTTTGCATGTGACTGCTGAT 59.183 47.619 0.00 0.00 42.75 2.90
1503 1543 2.415491 CCTTTGCATGTGACTGCTGATG 60.415 50.000 0.00 0.00 42.75 3.07
1504 1544 2.188062 TTGCATGTGACTGCTGATGA 57.812 45.000 0.00 0.00 42.75 2.92
1505 1545 2.413310 TGCATGTGACTGCTGATGAT 57.587 45.000 0.00 0.00 42.75 2.45
1609 1662 1.904537 TCATCACTCTCATGTGGCTGT 59.095 47.619 0.00 0.00 38.40 4.40
1611 1664 2.936919 TCACTCTCATGTGGCTGTTT 57.063 45.000 0.00 0.00 38.40 2.83
1620 1673 3.191162 TCATGTGGCTGTTTAATCTGCAC 59.809 43.478 14.85 11.64 34.71 4.57
1655 1708 4.319177 CTCTCCCTTCAACAGGTAACAAG 58.681 47.826 0.00 0.00 42.02 3.16
1657 1710 4.597507 TCTCCCTTCAACAGGTAACAAGAT 59.402 41.667 0.00 0.00 42.02 2.40
1703 2791 8.246430 TCATTATTACCCTGATCGTCTAAAGT 57.754 34.615 0.00 0.00 0.00 2.66
1704 2792 8.701895 TCATTATTACCCTGATCGTCTAAAGTT 58.298 33.333 0.00 0.00 0.00 2.66
1981 3069 9.237846 GCAGGTATTTTATTTCATCTTAAGTGC 57.762 33.333 1.63 0.00 0.00 4.40
2112 3204 0.598065 GTGGAGTTGTGTTGGCATCC 59.402 55.000 0.00 0.00 0.00 3.51
2229 3323 9.699703 GATTACCCTCTTCAGATATTGTAAGAC 57.300 37.037 0.00 0.00 0.00 3.01
2274 3368 3.161450 GCCCCTCATAGGTCCGCA 61.161 66.667 0.00 0.00 31.93 5.69
2378 3472 8.150296 TCATACCTCAAATCCATACTACACATG 58.850 37.037 0.00 0.00 0.00 3.21
2406 3500 4.689345 ACAAAAGCTACGAAGTACCACATC 59.311 41.667 0.00 0.00 45.11 3.06
2436 4018 4.273969 CCTAGCCTACTTCTACTCTTCGTG 59.726 50.000 0.00 0.00 0.00 4.35
2475 4057 4.065281 GCCGGTAGTGCCTGACGT 62.065 66.667 1.90 0.00 34.25 4.34
2591 4173 2.476320 GCCTTTGAGCGGATGGAGC 61.476 63.158 0.00 0.00 0.00 4.70
2714 4301 2.741055 GCCTTCCTCCTCTGGCTCC 61.741 68.421 0.00 0.00 41.92 4.70
2717 4304 3.905153 TTCCTCCTCTGGCTCCGCA 62.905 63.158 0.00 0.00 0.00 5.69
2807 4419 2.103042 GCTGCAATCCGAGCTTCGT 61.103 57.895 0.00 0.00 38.40 3.85
2809 4421 2.301902 CTGCAATCCGAGCTTCGTGC 62.302 60.000 10.50 10.50 39.06 5.34
2942 4554 4.424711 GAATGGGGAGTGGCGGCA 62.425 66.667 7.97 7.97 0.00 5.69
2976 4589 0.035317 TGTGAGTGCAGCTAGGGTTG 59.965 55.000 0.00 0.00 0.00 3.77
2990 4603 4.692475 GTTGGGGGTCACCGTCCG 62.692 72.222 0.96 0.00 41.60 4.79
3029 4642 2.756042 CCCCTCGGGCATCAATCCA 61.756 63.158 0.00 0.00 35.35 3.41
3073 4686 2.609747 GTCTGGGCCTCCTCATATACA 58.390 52.381 4.53 0.00 0.00 2.29
3141 4756 3.068881 CCAGTTTGAGGAGCCCGA 58.931 61.111 0.00 0.00 0.00 5.14
3143 4758 1.376037 CAGTTTGAGGAGCCCGACC 60.376 63.158 0.00 0.00 0.00 4.79
3162 4779 0.038343 CGGGCCATGTTTTTGACCAG 60.038 55.000 4.39 0.00 0.00 4.00
3214 4831 1.896660 GTGCGTTTGAGGAGCCCAA 60.897 57.895 0.00 0.00 0.00 4.12
3320 4945 6.679327 AAGAAAGAAACCAGTAGTTCACAC 57.321 37.500 0.00 0.00 37.88 3.82
3407 6776 9.421399 TGAGGTGTCAATTATGAATAGACTCTA 57.579 33.333 0.00 0.00 37.30 2.43
3600 7135 5.307716 TGAGAACCATCTGCCATCATGTATA 59.692 40.000 0.00 0.00 35.54 1.47
3601 7136 5.555017 AGAACCATCTGCCATCATGTATAC 58.445 41.667 0.00 0.00 33.59 1.47
3602 7137 5.309020 AGAACCATCTGCCATCATGTATACT 59.691 40.000 4.17 0.00 33.59 2.12
3603 7138 4.903054 ACCATCTGCCATCATGTATACTG 58.097 43.478 4.17 0.58 0.00 2.74
3604 7139 4.594491 ACCATCTGCCATCATGTATACTGA 59.406 41.667 4.17 6.02 0.00 3.41
3605 7140 5.176592 CCATCTGCCATCATGTATACTGAG 58.823 45.833 4.17 0.00 0.00 3.35
3606 7141 5.279859 CCATCTGCCATCATGTATACTGAGT 60.280 44.000 4.17 0.00 0.00 3.41
3607 7142 5.876651 TCTGCCATCATGTATACTGAGTT 57.123 39.130 4.17 0.00 0.00 3.01
3631 7203 4.225042 ACTGACTGCATATGTACTTTGGGA 59.775 41.667 4.29 0.00 0.00 4.37
3772 7344 1.068816 GGCATTCACACCGTACAAACC 60.069 52.381 0.00 0.00 0.00 3.27
3910 7483 7.615365 CCCATTAATGCTATATTTAGAGGGCAA 59.385 37.037 10.11 0.00 33.44 4.52
4548 9367 4.106197 CCGTTATCTTCTTCAGAACTCCG 58.894 47.826 0.00 0.00 34.16 4.63
4560 9379 5.263968 TCAGAACTCCGATTTCACCTATC 57.736 43.478 1.76 0.00 0.00 2.08
4686 9505 0.036022 GAACTGGTCTGGCTCTGCTT 59.964 55.000 0.00 0.00 0.00 3.91
4884 9703 6.065374 TCTTCTTATTTGGCTGTTTGTACCA 58.935 36.000 0.00 0.00 0.00 3.25
4955 9774 4.800471 GCACTGTCAAAACTCTTTTCAAGG 59.200 41.667 0.00 0.00 0.00 3.61
5249 10072 6.607019 TGTTAAATCTCAACAAGGGGTAGTT 58.393 36.000 0.00 0.00 33.11 2.24
5253 10076 7.520451 AAATCTCAACAAGGGGTAGTTTTAC 57.480 36.000 0.00 0.00 0.00 2.01
5319 10145 9.823647 TTTCTCTAAAGATCAGTATCAATGGAC 57.176 33.333 0.00 0.00 34.28 4.02
5320 10146 7.652727 TCTCTAAAGATCAGTATCAATGGACG 58.347 38.462 0.00 0.00 34.28 4.79
5321 10147 7.502561 TCTCTAAAGATCAGTATCAATGGACGA 59.497 37.037 0.00 0.00 34.28 4.20
5330 10196 8.538409 TCAGTATCAATGGACGATTAATCATG 57.462 34.615 15.57 2.81 0.00 3.07
5335 10201 4.818534 ATGGACGATTAATCATGTGCAC 57.181 40.909 16.07 10.75 35.50 4.57
5358 10224 4.201910 CGTGCATATGTGGTTTCCTTTAGG 60.202 45.833 4.29 0.00 0.00 2.69
5407 10273 6.091986 TGTCTTGTGGAAAACTTCAATTTTGC 59.908 34.615 0.00 0.00 39.56 3.68
5416 10282 7.169813 GGAAAACTTCAATTTTGCTCGAGATTT 59.830 33.333 18.75 0.00 37.05 2.17
5447 10313 6.775142 TCACTTATGAGGGAATTTTGTTCACA 59.225 34.615 0.00 0.00 30.66 3.58
5448 10314 7.040478 TCACTTATGAGGGAATTTTGTTCACAG 60.040 37.037 0.00 0.00 30.66 3.66
5458 10324 8.567104 GGGAATTTTGTTCACAGCAAAAATAAT 58.433 29.630 7.19 0.00 45.21 1.28
5468 10334 8.140677 TCACAGCAAAAATAATTTGTTCAAGG 57.859 30.769 3.22 0.00 0.00 3.61
5495 10382 8.700051 TGATTTCCTCACCAAATAGAAACAAAA 58.300 29.630 0.00 0.00 29.89 2.44
5617 10510 1.905215 CCTGTGGATGAGGAGTTGAGT 59.095 52.381 0.00 0.00 31.48 3.41
5619 10512 3.515502 CCTGTGGATGAGGAGTTGAGTAA 59.484 47.826 0.00 0.00 31.48 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.986833 CATTTAATTCTATGTCACGTCATCAAA 57.013 29.630 0.00 0.00 0.00 2.69
4 5 9.377312 TCATTTAATTCTATGTCACGTCATCAA 57.623 29.630 0.00 0.00 0.00 2.57
5 6 8.940768 TCATTTAATTCTATGTCACGTCATCA 57.059 30.769 0.00 0.00 0.00 3.07
7 8 9.599866 TCTTCATTTAATTCTATGTCACGTCAT 57.400 29.630 0.00 0.00 0.00 3.06
8 9 8.996024 TCTTCATTTAATTCTATGTCACGTCA 57.004 30.769 0.00 0.00 0.00 4.35
22 23 9.972106 ACTCAATCCTCTCTTTCTTCATTTAAT 57.028 29.630 0.00 0.00 0.00 1.40
25 26 9.612066 GATACTCAATCCTCTCTTTCTTCATTT 57.388 33.333 0.00 0.00 0.00 2.32
26 27 8.766476 TGATACTCAATCCTCTCTTTCTTCATT 58.234 33.333 0.00 0.00 33.22 2.57
27 28 8.316497 TGATACTCAATCCTCTCTTTCTTCAT 57.684 34.615 0.00 0.00 33.22 2.57
28 29 7.724490 TGATACTCAATCCTCTCTTTCTTCA 57.276 36.000 0.00 0.00 33.22 3.02
29 30 9.691362 GTATGATACTCAATCCTCTCTTTCTTC 57.309 37.037 0.00 0.00 33.22 2.87
30 31 8.646900 GGTATGATACTCAATCCTCTCTTTCTT 58.353 37.037 2.24 0.00 33.22 2.52
31 32 7.786943 TGGTATGATACTCAATCCTCTCTTTCT 59.213 37.037 2.24 0.00 33.22 2.52
32 33 7.957002 TGGTATGATACTCAATCCTCTCTTTC 58.043 38.462 2.24 0.00 33.22 2.62
33 34 7.921041 TGGTATGATACTCAATCCTCTCTTT 57.079 36.000 2.24 0.00 33.22 2.52
34 35 7.732140 TCATGGTATGATACTCAATCCTCTCTT 59.268 37.037 2.24 0.00 33.59 2.85
35 36 7.244558 TCATGGTATGATACTCAATCCTCTCT 58.755 38.462 2.24 0.00 33.59 3.10
36 37 7.473735 TCATGGTATGATACTCAATCCTCTC 57.526 40.000 2.24 0.00 33.59 3.20
108 109 8.975295 GGAACAGAGGGAGTAGTACTTTATTTA 58.025 37.037 0.00 0.00 0.00 1.40
109 110 7.679025 AGGAACAGAGGGAGTAGTACTTTATTT 59.321 37.037 0.00 0.00 0.00 1.40
110 111 7.190501 AGGAACAGAGGGAGTAGTACTTTATT 58.809 38.462 0.00 0.00 0.00 1.40
111 112 6.743788 AGGAACAGAGGGAGTAGTACTTTAT 58.256 40.000 0.00 0.00 0.00 1.40
112 113 6.150034 AGGAACAGAGGGAGTAGTACTTTA 57.850 41.667 0.00 0.00 0.00 1.85
113 114 5.013258 AGGAACAGAGGGAGTAGTACTTT 57.987 43.478 0.00 0.00 0.00 2.66
114 115 4.678538 AGGAACAGAGGGAGTAGTACTT 57.321 45.455 0.00 0.00 0.00 2.24
115 116 5.793034 TTAGGAACAGAGGGAGTAGTACT 57.207 43.478 1.37 1.37 0.00 2.73
116 117 8.709272 ATATTTAGGAACAGAGGGAGTAGTAC 57.291 38.462 0.00 0.00 0.00 2.73
117 118 9.725206 AAATATTTAGGAACAGAGGGAGTAGTA 57.275 33.333 0.00 0.00 0.00 1.82
118 119 8.487028 CAAATATTTAGGAACAGAGGGAGTAGT 58.513 37.037 0.00 0.00 0.00 2.73
119 120 8.487028 ACAAATATTTAGGAACAGAGGGAGTAG 58.513 37.037 0.00 0.00 0.00 2.57
120 121 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
121 122 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
122 123 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
123 124 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
124 125 8.049721 AGAAGACAAATATTTAGGAACAGAGGG 58.950 37.037 0.00 0.00 0.00 4.30
140 141 9.566432 ACTTGTTGAAATCTCTAGAAGACAAAT 57.434 29.630 0.00 0.00 36.65 2.32
141 142 8.830580 CACTTGTTGAAATCTCTAGAAGACAAA 58.169 33.333 0.00 0.00 36.65 2.83
142 143 8.204160 TCACTTGTTGAAATCTCTAGAAGACAA 58.796 33.333 0.00 0.00 36.65 3.18
143 144 7.653713 GTCACTTGTTGAAATCTCTAGAAGACA 59.346 37.037 0.00 0.00 34.25 3.41
144 145 7.870445 AGTCACTTGTTGAAATCTCTAGAAGAC 59.130 37.037 0.00 0.00 34.25 3.01
145 146 7.957002 AGTCACTTGTTGAAATCTCTAGAAGA 58.043 34.615 0.00 0.00 35.39 2.87
146 147 9.134734 GTAGTCACTTGTTGAAATCTCTAGAAG 57.865 37.037 0.00 0.00 35.39 2.85
147 148 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
148 149 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
149 150 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
150 151 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
151 152 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
152 153 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
153 154 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
154 155 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
155 156 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
156 157 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
157 158 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
158 159 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
159 160 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
160 161 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
161 162 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
162 163 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
163 164 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
164 165 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
165 166 6.456181 GCTCATTTTGCTCTGTATGTAGTCAC 60.456 42.308 0.00 0.00 0.00 3.67
166 167 5.582269 GCTCATTTTGCTCTGTATGTAGTCA 59.418 40.000 0.00 0.00 0.00 3.41
167 168 5.276584 CGCTCATTTTGCTCTGTATGTAGTC 60.277 44.000 0.00 0.00 0.00 2.59
168 169 4.568359 CGCTCATTTTGCTCTGTATGTAGT 59.432 41.667 0.00 0.00 0.00 2.73
169 170 4.805719 TCGCTCATTTTGCTCTGTATGTAG 59.194 41.667 0.00 0.00 0.00 2.74
170 171 4.754322 TCGCTCATTTTGCTCTGTATGTA 58.246 39.130 0.00 0.00 0.00 2.29
171 172 3.599343 TCGCTCATTTTGCTCTGTATGT 58.401 40.909 0.00 0.00 0.00 2.29
172 173 4.604843 TTCGCTCATTTTGCTCTGTATG 57.395 40.909 0.00 0.00 0.00 2.39
173 174 5.121811 AGATTCGCTCATTTTGCTCTGTAT 58.878 37.500 0.00 0.00 0.00 2.29
174 175 4.507710 AGATTCGCTCATTTTGCTCTGTA 58.492 39.130 0.00 0.00 0.00 2.74
175 176 3.341823 AGATTCGCTCATTTTGCTCTGT 58.658 40.909 0.00 0.00 0.00 3.41
176 177 5.670149 ATAGATTCGCTCATTTTGCTCTG 57.330 39.130 0.00 0.00 0.00 3.35
177 178 6.520272 AGTATAGATTCGCTCATTTTGCTCT 58.480 36.000 0.00 0.00 0.00 4.09
178 179 6.644592 AGAGTATAGATTCGCTCATTTTGCTC 59.355 38.462 0.00 0.00 0.00 4.26
179 180 6.520272 AGAGTATAGATTCGCTCATTTTGCT 58.480 36.000 0.00 0.00 0.00 3.91
180 181 6.777526 AGAGTATAGATTCGCTCATTTTGC 57.222 37.500 0.00 0.00 0.00 3.68
205 206 9.999009 CACATACGGACGTATATAGACATATTT 57.001 33.333 15.98 0.00 39.07 1.40
206 207 8.618677 CCACATACGGACGTATATAGACATATT 58.381 37.037 15.98 0.00 39.07 1.28
207 208 7.772292 ACCACATACGGACGTATATAGACATAT 59.228 37.037 15.98 0.00 39.07 1.78
208 209 7.064966 CACCACATACGGACGTATATAGACATA 59.935 40.741 15.98 0.00 39.07 2.29
209 210 5.942236 ACCACATACGGACGTATATAGACAT 59.058 40.000 15.98 0.00 39.07 3.06
210 211 5.179929 CACCACATACGGACGTATATAGACA 59.820 44.000 15.98 0.00 39.07 3.41
211 212 5.180117 ACACCACATACGGACGTATATAGAC 59.820 44.000 15.98 0.00 39.07 2.59
212 213 5.308014 ACACCACATACGGACGTATATAGA 58.692 41.667 15.98 0.00 39.07 1.98
213 214 5.410746 AGACACCACATACGGACGTATATAG 59.589 44.000 15.98 10.24 39.07 1.31
214 215 5.308014 AGACACCACATACGGACGTATATA 58.692 41.667 15.98 0.00 39.07 0.86
215 216 4.139786 AGACACCACATACGGACGTATAT 58.860 43.478 15.98 3.42 39.07 0.86
216 217 3.544684 AGACACCACATACGGACGTATA 58.455 45.455 15.98 0.00 39.07 1.47
217 218 2.372264 AGACACCACATACGGACGTAT 58.628 47.619 11.25 11.25 41.49 3.06
218 219 1.825090 AGACACCACATACGGACGTA 58.175 50.000 7.05 7.05 34.87 3.57
219 220 1.825090 TAGACACCACATACGGACGT 58.175 50.000 1.98 1.98 0.00 4.34
220 221 3.369385 GAATAGACACCACATACGGACG 58.631 50.000 0.00 0.00 0.00 4.79
221 222 3.065786 TCGAATAGACACCACATACGGAC 59.934 47.826 0.00 0.00 0.00 4.79
222 223 3.281158 TCGAATAGACACCACATACGGA 58.719 45.455 0.00 0.00 0.00 4.69
223 224 3.703286 TCGAATAGACACCACATACGG 57.297 47.619 0.00 0.00 0.00 4.02
224 225 5.977725 AGATTTCGAATAGACACCACATACG 59.022 40.000 0.00 0.00 0.00 3.06
225 226 7.168302 CAGAGATTTCGAATAGACACCACATAC 59.832 40.741 0.00 0.00 0.00 2.39
226 227 7.068226 TCAGAGATTTCGAATAGACACCACATA 59.932 37.037 0.00 0.00 0.00 2.29
227 228 6.045318 CAGAGATTTCGAATAGACACCACAT 58.955 40.000 0.00 0.00 0.00 3.21
228 229 5.185056 TCAGAGATTTCGAATAGACACCACA 59.815 40.000 0.00 0.00 0.00 4.17
229 230 5.651530 TCAGAGATTTCGAATAGACACCAC 58.348 41.667 0.00 0.00 0.00 4.16
230 231 5.914898 TCAGAGATTTCGAATAGACACCA 57.085 39.130 0.00 0.00 0.00 4.17
231 232 7.596749 TTTTCAGAGATTTCGAATAGACACC 57.403 36.000 0.00 0.00 0.00 4.16
253 254 7.051696 TCCCTCCCTTCCTAAATATGTTTTT 57.948 36.000 0.00 0.00 0.00 1.94
254 255 6.219772 ACTCCCTCCCTTCCTAAATATGTTTT 59.780 38.462 0.00 0.00 0.00 2.43
255 256 5.736616 ACTCCCTCCCTTCCTAAATATGTTT 59.263 40.000 0.00 0.00 0.00 2.83
256 257 5.297799 ACTCCCTCCCTTCCTAAATATGTT 58.702 41.667 0.00 0.00 0.00 2.71
257 258 4.909284 ACTCCCTCCCTTCCTAAATATGT 58.091 43.478 0.00 0.00 0.00 2.29
258 259 8.709308 CATATACTCCCTCCCTTCCTAAATATG 58.291 40.741 0.00 0.00 0.00 1.78
259 260 8.642869 TCATATACTCCCTCCCTTCCTAAATAT 58.357 37.037 0.00 0.00 0.00 1.28
260 261 8.019537 TCATATACTCCCTCCCTTCCTAAATA 57.980 38.462 0.00 0.00 0.00 1.40
261 262 6.886637 TCATATACTCCCTCCCTTCCTAAAT 58.113 40.000 0.00 0.00 0.00 1.40
262 263 6.303427 TCATATACTCCCTCCCTTCCTAAA 57.697 41.667 0.00 0.00 0.00 1.85
263 264 5.961399 TCATATACTCCCTCCCTTCCTAA 57.039 43.478 0.00 0.00 0.00 2.69
264 265 6.745791 AGTATCATATACTCCCTCCCTTCCTA 59.254 42.308 0.00 0.00 0.00 2.94
265 266 5.561967 AGTATCATATACTCCCTCCCTTCCT 59.438 44.000 0.00 0.00 0.00 3.36
266 267 5.844601 AGTATCATATACTCCCTCCCTTCC 58.155 45.833 0.00 0.00 0.00 3.46
276 277 7.611079 AGTTTACGGAGGGAGTATCATATACTC 59.389 40.741 15.62 15.62 42.28 2.59
277 278 7.468496 AGTTTACGGAGGGAGTATCATATACT 58.532 38.462 0.00 0.00 36.25 2.12
278 279 7.700022 AGTTTACGGAGGGAGTATCATATAC 57.300 40.000 0.00 0.00 36.25 1.47
279 280 9.986157 ATTAGTTTACGGAGGGAGTATCATATA 57.014 33.333 0.00 0.00 36.25 0.86
280 281 8.896722 ATTAGTTTACGGAGGGAGTATCATAT 57.103 34.615 0.00 0.00 36.25 1.78
281 282 9.986157 ATATTAGTTTACGGAGGGAGTATCATA 57.014 33.333 0.00 0.00 36.25 2.15
282 283 8.896722 ATATTAGTTTACGGAGGGAGTATCAT 57.103 34.615 0.00 0.00 36.25 2.45
283 284 9.812347 TTATATTAGTTTACGGAGGGAGTATCA 57.188 33.333 0.00 0.00 36.25 2.15
286 287 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
287 288 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
288 289 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
289 290 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
290 291 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
291 292 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
292 293 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
293 294 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
294 295 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
339 340 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
340 341 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
341 342 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
342 343 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
343 344 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
351 352 9.710818 TGATTAGTACTCCCTCTGTAAACTAAT 57.289 33.333 0.00 4.90 32.62 1.73
352 353 9.710818 ATGATTAGTACTCCCTCTGTAAACTAA 57.289 33.333 0.00 0.00 0.00 2.24
354 355 9.710818 TTATGATTAGTACTCCCTCTGTAAACT 57.289 33.333 0.00 0.00 0.00 2.66
404 405 9.520204 CATCACGCATATGATATTAGTGTATGA 57.480 33.333 6.97 1.53 37.20 2.15
405 406 8.271487 GCATCACGCATATGATATTAGTGTATG 58.729 37.037 6.97 14.48 37.20 2.39
406 407 8.200120 AGCATCACGCATATGATATTAGTGTAT 58.800 33.333 6.97 6.58 46.13 2.29
407 408 7.547227 AGCATCACGCATATGATATTAGTGTA 58.453 34.615 6.97 5.15 46.13 2.90
408 409 6.401394 AGCATCACGCATATGATATTAGTGT 58.599 36.000 6.97 1.56 46.13 3.55
409 410 6.898912 AGCATCACGCATATGATATTAGTG 57.101 37.500 6.97 9.49 46.13 2.74
416 417 9.939802 ATCATATATTAGCATCACGCATATGAT 57.060 29.630 6.97 9.85 42.14 2.45
421 422 9.254133 GAAGTATCATATATTAGCATCACGCAT 57.746 33.333 0.00 0.00 46.13 4.73
422 423 7.706607 GGAAGTATCATATATTAGCATCACGCA 59.293 37.037 0.00 0.00 46.13 5.24
423 424 7.169982 GGGAAGTATCATATATTAGCATCACGC 59.830 40.741 0.00 0.00 42.91 5.34
424 425 7.379797 CGGGAAGTATCATATATTAGCATCACG 59.620 40.741 0.00 0.00 0.00 4.35
425 426 8.198109 ACGGGAAGTATCATATATTAGCATCAC 58.802 37.037 0.00 0.00 0.00 3.06
426 427 8.306313 ACGGGAAGTATCATATATTAGCATCA 57.694 34.615 0.00 0.00 0.00 3.07
434 435 9.720769 CTGGTTTTAACGGGAAGTATCATATAT 57.279 33.333 0.00 0.00 0.00 0.86
435 436 8.152246 CCTGGTTTTAACGGGAAGTATCATATA 58.848 37.037 0.00 0.00 0.00 0.86
436 437 6.996282 CCTGGTTTTAACGGGAAGTATCATAT 59.004 38.462 0.00 0.00 0.00 1.78
437 438 6.070078 ACCTGGTTTTAACGGGAAGTATCATA 60.070 38.462 0.00 0.00 0.00 2.15
438 439 5.190677 CCTGGTTTTAACGGGAAGTATCAT 58.809 41.667 0.00 0.00 0.00 2.45
439 440 4.041938 ACCTGGTTTTAACGGGAAGTATCA 59.958 41.667 0.00 0.00 0.00 2.15
440 441 4.582869 ACCTGGTTTTAACGGGAAGTATC 58.417 43.478 0.00 0.00 0.00 2.24
441 442 4.645863 ACCTGGTTTTAACGGGAAGTAT 57.354 40.909 0.00 0.00 0.00 2.12
442 443 4.136051 CAACCTGGTTTTAACGGGAAGTA 58.864 43.478 9.90 0.00 0.00 2.24
443 444 2.953648 CAACCTGGTTTTAACGGGAAGT 59.046 45.455 9.90 0.00 0.00 3.01
444 445 3.004002 GTCAACCTGGTTTTAACGGGAAG 59.996 47.826 9.90 0.00 0.00 3.46
445 446 2.950975 GTCAACCTGGTTTTAACGGGAA 59.049 45.455 9.90 0.00 0.00 3.97
446 447 2.092538 TGTCAACCTGGTTTTAACGGGA 60.093 45.455 9.90 0.00 0.00 5.14
447 448 2.299521 TGTCAACCTGGTTTTAACGGG 58.700 47.619 9.90 0.00 0.00 5.28
448 449 3.855524 GCATGTCAACCTGGTTTTAACGG 60.856 47.826 9.90 6.50 0.00 4.44
449 450 3.305110 GCATGTCAACCTGGTTTTAACG 58.695 45.455 9.90 0.00 0.00 3.18
450 451 3.554129 GGGCATGTCAACCTGGTTTTAAC 60.554 47.826 9.90 9.18 0.00 2.01
451 452 2.630580 GGGCATGTCAACCTGGTTTTAA 59.369 45.455 9.90 0.00 0.00 1.52
452 453 2.158385 AGGGCATGTCAACCTGGTTTTA 60.158 45.455 9.90 0.00 32.26 1.52
453 454 1.047801 GGGCATGTCAACCTGGTTTT 58.952 50.000 9.90 0.00 0.00 2.43
454 455 0.188342 AGGGCATGTCAACCTGGTTT 59.812 50.000 9.90 0.00 32.26 3.27
455 456 0.251341 GAGGGCATGTCAACCTGGTT 60.251 55.000 6.18 6.18 34.02 3.67
456 457 1.380302 GAGGGCATGTCAACCTGGT 59.620 57.895 0.00 0.00 34.02 4.00
457 458 1.379044 GGAGGGCATGTCAACCTGG 60.379 63.158 0.00 0.00 34.02 4.45
458 459 1.746615 CGGAGGGCATGTCAACCTG 60.747 63.158 0.00 0.00 34.02 4.00
459 460 1.918293 TCGGAGGGCATGTCAACCT 60.918 57.895 0.00 0.00 37.31 3.50
460 461 1.745489 GTCGGAGGGCATGTCAACC 60.745 63.158 0.00 0.34 0.00 3.77
461 462 2.100631 CGTCGGAGGGCATGTCAAC 61.101 63.158 0.00 0.00 0.00 3.18
462 463 2.264480 CGTCGGAGGGCATGTCAA 59.736 61.111 0.00 0.00 0.00 3.18
463 464 2.994995 ACGTCGGAGGGCATGTCA 60.995 61.111 0.00 0.00 0.00 3.58
464 465 2.509336 CACGTCGGAGGGCATGTC 60.509 66.667 2.48 0.00 0.00 3.06
465 466 4.760047 GCACGTCGGAGGGCATGT 62.760 66.667 2.48 0.00 0.00 3.21
470 471 3.822192 TGATCGCACGTCGGAGGG 61.822 66.667 2.48 0.00 39.05 4.30
480 481 4.365505 TGGCCGTTCGTGATCGCA 62.366 61.111 7.12 0.00 36.96 5.10
530 532 5.066593 ACTTTCTACTGCTCCTTTTTCCAG 58.933 41.667 0.00 0.00 0.00 3.86
531 533 5.048846 ACTTTCTACTGCTCCTTTTTCCA 57.951 39.130 0.00 0.00 0.00 3.53
532 534 6.039382 TGAAACTTTCTACTGCTCCTTTTTCC 59.961 38.462 3.22 0.00 0.00 3.13
533 535 7.027778 TGAAACTTTCTACTGCTCCTTTTTC 57.972 36.000 3.22 0.00 0.00 2.29
546 550 5.445964 ACAGCCCTTTCTTGAAACTTTCTA 58.554 37.500 3.22 0.00 0.00 2.10
555 559 0.319555 CGACGACAGCCCTTTCTTGA 60.320 55.000 0.00 0.00 0.00 3.02
597 601 0.465460 ACACTCGCTTTTTCTGGCCA 60.465 50.000 4.71 4.71 0.00 5.36
690 719 1.304713 AGCGGGGTAAAGACGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
692 721 1.141234 GGAGCGGGGTAAAGACGAG 59.859 63.158 0.00 0.00 0.00 4.18
693 722 0.901580 AAGGAGCGGGGTAAAGACGA 60.902 55.000 0.00 0.00 0.00 4.20
695 724 0.107800 GGAAGGAGCGGGGTAAAGAC 60.108 60.000 0.00 0.00 0.00 3.01
696 725 0.545787 TGGAAGGAGCGGGGTAAAGA 60.546 55.000 0.00 0.00 0.00 2.52
697 726 0.392595 GTGGAAGGAGCGGGGTAAAG 60.393 60.000 0.00 0.00 0.00 1.85
698 727 1.681076 GTGGAAGGAGCGGGGTAAA 59.319 57.895 0.00 0.00 0.00 2.01
699 728 2.295602 GGTGGAAGGAGCGGGGTAA 61.296 63.158 0.00 0.00 0.00 2.85
700 729 2.686106 GGTGGAAGGAGCGGGGTA 60.686 66.667 0.00 0.00 0.00 3.69
701 730 4.974438 TGGTGGAAGGAGCGGGGT 62.974 66.667 0.00 0.00 0.00 4.95
702 731 4.101448 CTGGTGGAAGGAGCGGGG 62.101 72.222 0.00 0.00 0.00 5.73
703 732 4.785453 GCTGGTGGAAGGAGCGGG 62.785 72.222 0.00 0.00 0.00 6.13
706 735 2.435059 GACGCTGGTGGAAGGAGC 60.435 66.667 0.00 0.00 0.00 4.70
811 840 0.602905 GCCGGCGCTATTTATGGAGT 60.603 55.000 12.58 0.00 0.00 3.85
887 916 1.354031 TCTCCTCTCTCTCACTGTGCT 59.646 52.381 2.12 0.00 0.00 4.40
894 923 0.179004 GGCGGATCTCCTCTCTCTCA 60.179 60.000 0.00 0.00 0.00 3.27
960 999 1.641577 GTCCGGTTCTTGGATTCTCG 58.358 55.000 0.00 0.00 37.93 4.04
965 1004 1.614241 CCTCCGTCCGGTTCTTGGAT 61.614 60.000 0.00 0.00 37.93 3.41
1095 1134 2.046864 CGAGGAGGAGAAGGCGACA 61.047 63.158 0.00 0.00 0.00 4.35
1430 1469 9.524496 ACGATCTGTATGTGTATAATAACCCTA 57.476 33.333 0.00 0.00 0.00 3.53
1431 1470 8.418597 ACGATCTGTATGTGTATAATAACCCT 57.581 34.615 0.00 0.00 0.00 4.34
1432 1471 9.485206 AAACGATCTGTATGTGTATAATAACCC 57.515 33.333 0.00 0.00 0.00 4.11
1451 1491 5.929415 GGATTAGGAGGATCAAGAAACGATC 59.071 44.000 0.00 0.00 38.86 3.69
1498 1538 6.927381 TGTGTAGTAGCATCATCAATCATCAG 59.073 38.462 0.00 0.00 0.00 2.90
1499 1539 6.819284 TGTGTAGTAGCATCATCAATCATCA 58.181 36.000 0.00 0.00 0.00 3.07
1500 1540 6.368243 CCTGTGTAGTAGCATCATCAATCATC 59.632 42.308 0.00 0.00 0.00 2.92
1501 1541 6.183361 ACCTGTGTAGTAGCATCATCAATCAT 60.183 38.462 0.00 0.00 0.00 2.45
1502 1542 5.129320 ACCTGTGTAGTAGCATCATCAATCA 59.871 40.000 0.00 0.00 0.00 2.57
1503 1543 5.605534 ACCTGTGTAGTAGCATCATCAATC 58.394 41.667 0.00 0.00 0.00 2.67
1504 1544 5.620738 ACCTGTGTAGTAGCATCATCAAT 57.379 39.130 0.00 0.00 0.00 2.57
1505 1545 5.187772 AGAACCTGTGTAGTAGCATCATCAA 59.812 40.000 0.00 0.00 0.00 2.57
1609 1662 1.203112 TGGCTTGGGGTGCAGATTAAA 60.203 47.619 0.00 0.00 0.00 1.52
1611 1664 0.407528 TTGGCTTGGGGTGCAGATTA 59.592 50.000 0.00 0.00 0.00 1.75
1620 1673 2.044551 GAGAGCCTTGGCTTGGGG 60.045 66.667 15.92 0.00 0.00 4.96
1679 1732 8.888579 AACTTTAGACGATCAGGGTAATAATG 57.111 34.615 0.00 0.00 0.00 1.90
1683 1736 6.942976 TCAAACTTTAGACGATCAGGGTAAT 58.057 36.000 0.00 0.00 0.00 1.89
1702 2790 7.275999 TGTTACCGAAAAGGAAACAATTCAAAC 59.724 33.333 0.00 0.00 45.00 2.93
1703 2791 7.275999 GTGTTACCGAAAAGGAAACAATTCAAA 59.724 33.333 0.00 0.00 45.00 2.69
1704 2792 6.752815 GTGTTACCGAAAAGGAAACAATTCAA 59.247 34.615 0.00 0.00 45.00 2.69
1765 2853 9.626045 AAAAGATTAATCCGTTCATCTCAAAAC 57.374 29.630 11.92 0.00 29.24 2.43
1981 3069 3.753272 ACATTTCATTTGTCAGGACGGAG 59.247 43.478 0.00 0.00 0.00 4.63
2112 3204 6.183360 ACCAGTTGAAAGAAACTTCAGTCATG 60.183 38.462 0.00 0.00 38.34 3.07
2229 3323 5.598416 TTGCTATATCCGGATGTAGATGG 57.402 43.478 38.12 22.84 35.36 3.51
2295 3389 3.775654 GTGACCAGGCCCTCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
2375 3469 3.266541 TCGTAGCTTTTGTGTTGCATG 57.733 42.857 0.00 0.00 0.00 4.06
2378 3472 3.334272 ACTTCGTAGCTTTTGTGTTGC 57.666 42.857 0.00 0.00 0.00 4.17
2406 3500 6.711645 AGAGTAGAAGTAGGCTAGGTTTATCG 59.288 42.308 0.00 0.00 0.00 2.92
2436 4018 3.252215 CACGGAGGTCATCTACATCTCTC 59.748 52.174 0.00 0.00 38.93 3.20
2470 4052 1.982395 CCAGGAGGCAGGTACGTCA 60.982 63.158 0.00 0.00 0.00 4.35
2475 4057 2.866378 TCCACCAGGAGGCAGGTA 59.134 61.111 0.00 0.00 39.61 3.08
2717 4304 3.083997 GGACACGGCCTGGAGGAT 61.084 66.667 0.00 0.00 37.39 3.24
2809 4421 3.237741 GAGGAGATCCAGGCCCGG 61.238 72.222 0.00 0.00 38.89 5.73
2853 4465 2.009051 TCACCACTTATGCAATGCTCG 58.991 47.619 6.82 0.00 0.00 5.03
2866 4478 4.457496 CGGCAGCGGATCACCACT 62.457 66.667 0.00 0.00 35.59 4.00
2942 4554 2.320781 CTCACATATCCCTTCCCTCGT 58.679 52.381 0.00 0.00 0.00 4.18
2945 4557 1.771255 GCACTCACATATCCCTTCCCT 59.229 52.381 0.00 0.00 0.00 4.20
2946 4558 1.490490 TGCACTCACATATCCCTTCCC 59.510 52.381 0.00 0.00 0.00 3.97
2949 4561 1.842562 AGCTGCACTCACATATCCCTT 59.157 47.619 1.02 0.00 0.00 3.95
2950 4562 1.504912 AGCTGCACTCACATATCCCT 58.495 50.000 1.02 0.00 0.00 4.20
2951 4563 2.289320 CCTAGCTGCACTCACATATCCC 60.289 54.545 1.02 0.00 0.00 3.85
2955 4568 1.866015 ACCCTAGCTGCACTCACATA 58.134 50.000 1.02 0.00 0.00 2.29
3007 4620 1.987807 ATTGATGCCCGAGGGGTCAG 61.988 60.000 10.61 0.00 46.51 3.51
3112 4727 1.483415 TCAAACTGGCCCTATACGTCC 59.517 52.381 0.00 0.00 0.00 4.79
3141 4756 1.468506 GGTCAAAAACATGGCCCGGT 61.469 55.000 0.00 0.00 39.24 5.28
3143 4758 0.038343 CTGGTCAAAAACATGGCCCG 60.038 55.000 0.00 0.00 44.72 6.13
3147 4762 3.631686 TCAGTGACTGGTCAAAAACATGG 59.368 43.478 13.33 0.00 41.85 3.66
3162 4779 4.736896 GACGGCCCGGTCAGTGAC 62.737 72.222 15.24 15.24 36.91 3.67
3197 4814 1.896660 GTTGGGCTCCTCAAACGCA 60.897 57.895 0.00 0.00 0.00 5.24
3198 4815 0.321298 TAGTTGGGCTCCTCAAACGC 60.321 55.000 0.00 0.00 0.00 4.84
3320 4945 1.474077 GGCTAACTGGATTGCCAACAG 59.526 52.381 0.00 0.00 45.41 3.16
3600 7135 5.667539 ACATATGCAGTCAGTAACTCAGT 57.332 39.130 1.58 0.00 35.45 3.41
3601 7136 6.800543 AGTACATATGCAGTCAGTAACTCAG 58.199 40.000 1.58 0.00 35.45 3.35
3602 7137 6.775594 AGTACATATGCAGTCAGTAACTCA 57.224 37.500 1.58 0.00 35.45 3.41
3603 7138 7.010552 CCAAAGTACATATGCAGTCAGTAACTC 59.989 40.741 1.58 0.00 35.45 3.01
3604 7139 6.818644 CCAAAGTACATATGCAGTCAGTAACT 59.181 38.462 1.58 0.00 39.44 2.24
3605 7140 6.037172 CCCAAAGTACATATGCAGTCAGTAAC 59.963 42.308 1.58 0.00 0.00 2.50
3606 7141 6.070481 TCCCAAAGTACATATGCAGTCAGTAA 60.070 38.462 1.58 0.00 0.00 2.24
3607 7142 5.423931 TCCCAAAGTACATATGCAGTCAGTA 59.576 40.000 1.58 0.00 0.00 2.74
3631 7203 5.742838 GCACTCCAAAATCCAATCCTGTTTT 60.743 40.000 0.00 0.00 0.00 2.43
3772 7344 6.763610 GGAAAGTGGTTCAGGATAGTTATCAG 59.236 42.308 1.91 0.00 38.06 2.90
3910 7483 4.862641 AGGTATGATGGGCTAAACTTGT 57.137 40.909 0.00 0.00 0.00 3.16
4072 7645 1.340889 GGAAACAAGTGCCAGCAATGA 59.659 47.619 12.18 0.00 0.00 2.57
4158 8974 5.361571 GGAACCTTTGTAGAACCTCCAAAAA 59.638 40.000 0.00 0.00 0.00 1.94
4391 9209 6.508777 TGTTACAGGCAATTAAGGACAAAAC 58.491 36.000 0.00 0.00 0.00 2.43
4548 9367 4.038402 CCAAGGGCATTGATAGGTGAAATC 59.962 45.833 14.30 0.00 41.83 2.17
4560 9379 3.763360 TCATGAAGTTACCAAGGGCATTG 59.237 43.478 4.63 4.63 38.74 2.82
4649 9468 1.289160 TCCTGCAGGCAAGGTAAGAT 58.711 50.000 28.91 0.00 34.44 2.40
4686 9505 6.269077 TGAATCTAGAGTACAGGAAAACACCA 59.731 38.462 0.00 0.00 0.00 4.17
4901 9720 0.250727 CGGTCCACCACAACCTTCAT 60.251 55.000 0.00 0.00 35.14 2.57
4955 9774 7.068716 AGGAGTACATGCCAAAATTCTTATTCC 59.931 37.037 0.00 0.00 0.00 3.01
5226 10048 7.520451 AAACTACCCCTTGTTGAGATTTAAC 57.480 36.000 0.00 0.00 0.00 2.01
5297 10123 7.582667 TCGTCCATTGATACTGATCTTTAGA 57.417 36.000 0.00 0.00 32.79 2.10
5319 10145 2.365948 GCACGTGCACATGATTAATCG 58.634 47.619 34.52 0.16 41.59 3.34
5335 10201 3.848272 AAAGGAAACCACATATGCACG 57.152 42.857 1.58 0.00 0.00 5.34
5342 10208 7.617723 TGTATATTTGCCTAAAGGAAACCACAT 59.382 33.333 0.00 0.00 37.39 3.21
5378 10244 3.126171 TGAAGTTTTCCACAAGACACACG 59.874 43.478 0.00 0.00 0.00 4.49
5380 10246 5.913137 ATTGAAGTTTTCCACAAGACACA 57.087 34.783 0.00 0.00 0.00 3.72
5407 10273 7.010923 CCTCATAAGTGAAAAGGAAATCTCGAG 59.989 40.741 5.93 5.93 33.05 4.04
5416 10282 7.508977 ACAAAATTCCCTCATAAGTGAAAAGGA 59.491 33.333 0.00 0.00 33.05 3.36
5447 10313 8.907222 ATCACCTTGAACAAATTATTTTTGCT 57.093 26.923 0.00 0.00 32.93 3.91
5448 10314 9.949174 AAATCACCTTGAACAAATTATTTTTGC 57.051 25.926 0.00 0.00 32.93 3.68
5509 10396 9.070149 CAGAATGTTCTATTCTTTTAAGCAAGC 57.930 33.333 0.00 0.00 36.32 4.01
5510 10397 9.565213 CCAGAATGTTCTATTCTTTTAAGCAAG 57.435 33.333 0.00 0.00 36.32 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.