Multiple sequence alignment - TraesCS1B01G134400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G134400 chr1B 100.000 3795 0 0 1 3795 170844858 170841064 0.000000e+00 7009.0
1 TraesCS1B01G134400 chr1B 94.648 355 12 3 3441 3795 170839679 170840026 9.270000e-151 544.0
2 TraesCS1B01G134400 chr1D 94.288 2556 104 18 867 3403 111606796 111604264 0.000000e+00 3873.0
3 TraesCS1B01G134400 chr1D 90.750 400 30 6 189 582 111607852 111607454 9.340000e-146 527.0
4 TraesCS1B01G134400 chr1D 82.456 171 12 10 614 778 111607465 111607307 2.380000e-27 134.0
5 TraesCS1B01G134400 chr1A 92.384 2416 123 27 867 3252 117981727 117979343 0.000000e+00 3386.0
6 TraesCS1B01G134400 chr1A 96.620 355 11 1 3441 3795 254349618 254349265 4.220000e-164 588.0
7 TraesCS1B01G134400 chr1A 94.602 352 12 4 3441 3792 254347720 254348064 4.310000e-149 538.0
8 TraesCS1B01G134400 chr1A 93.266 297 19 1 1 296 117982450 117982154 1.620000e-118 436.0
9 TraesCS1B01G134400 chr1A 96.850 127 1 2 3035 3158 117978227 117978101 3.840000e-50 209.0
10 TraesCS1B01G134400 chr1A 84.375 128 20 0 3267 3394 117978099 117977972 3.980000e-25 126.0
11 TraesCS1B01G134400 chr1A 96.875 64 1 1 3254 3317 117979082 117979020 5.180000e-19 106.0
12 TraesCS1B01G134400 chr1A 90.909 66 2 3 723 786 117982103 117982040 6.750000e-13 86.1
13 TraesCS1B01G134400 chr1A 77.519 129 25 3 382 509 463465058 463465183 1.460000e-09 75.0
14 TraesCS1B01G134400 chr2A 99.171 362 3 0 3434 3795 29953245 29953606 0.000000e+00 652.0
15 TraesCS1B01G134400 chr2A 94.366 355 13 3 3441 3795 29954996 29954649 4.310000e-149 538.0
16 TraesCS1B01G134400 chr5B 98.873 355 4 0 3441 3795 474044943 474045297 5.350000e-178 634.0
17 TraesCS1B01G134400 chr5B 92.958 355 16 5 3441 3795 474046683 474046338 3.380000e-140 508.0
18 TraesCS1B01G134400 chr5B 91.071 56 5 0 3346 3401 519250320 519250265 4.070000e-10 76.8
19 TraesCS1B01G134400 chr3B 98.592 355 5 0 3441 3795 393249976 393249622 2.490000e-176 628.0
20 TraesCS1B01G134400 chr3B 92.958 355 18 3 3441 3795 393248235 393248582 9.400000e-141 510.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G134400 chr1B 170841064 170844858 3794 True 7009.000000 7009 100.000000 1 3795 1 chr1B.!!$R1 3794
1 TraesCS1B01G134400 chr1D 111604264 111607852 3588 True 1511.333333 3873 89.164667 189 3403 3 chr1D.!!$R1 3214
2 TraesCS1B01G134400 chr1A 117977972 117982450 4478 True 724.850000 3386 92.443167 1 3394 6 chr1A.!!$R2 3393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 602 0.026803 CATAAACTGCCGCGCTTCTC 59.973 55.0 5.56 0.0 0.00 2.87 F
599 603 0.108138 ATAAACTGCCGCGCTTCTCT 60.108 50.0 5.56 0.0 0.00 3.10 F
690 694 0.252467 AGTGCTAGAGCCCCTGAAGT 60.252 55.0 0.00 0.0 41.18 3.01 F
833 1374 0.387929 TCGGGATCCAGCGTATGTTC 59.612 55.0 15.23 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 2146 0.033920 CCGAATCCATGGATCTCGCA 59.966 55.000 32.09 10.57 35.71 5.10 R
1984 2684 0.037326 GATCAAGTCACCGACCAGCA 60.037 55.000 0.00 0.00 32.18 4.41 R
2599 3305 0.881118 TCCCAATCAGCAAAGAACGC 59.119 50.000 0.00 0.00 0.00 4.84 R
2802 3511 2.286425 ACCCTCACCCCCATCCAG 60.286 66.667 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 0.804989 GAAGGACCGCTTGAATGTGG 59.195 55.000 0.00 0.00 42.85 4.17
87 88 4.583907 TGAATGTGGAGAAGCATTTGTCAA 59.416 37.500 0.00 0.00 35.69 3.18
93 94 5.984926 GTGGAGAAGCATTTGTCAAATTCAA 59.015 36.000 8.12 0.00 0.00 2.69
97 98 7.172019 GGAGAAGCATTTGTCAAATTCAATGTT 59.828 33.333 8.12 0.00 0.00 2.71
113 114 2.957491 TGTTGAACAAAGGGCACTTG 57.043 45.000 0.00 0.00 36.93 3.16
131 132 3.953612 ACTTGTGTTGGCATGAAGAAAGA 59.046 39.130 0.00 0.00 0.00 2.52
138 139 4.908601 TGGCATGAAGAAAGAGGAGTTA 57.091 40.909 0.00 0.00 0.00 2.24
161 162 2.863809 ACTTTTGCAACTCCTACCTGG 58.136 47.619 0.00 0.00 37.10 4.45
249 250 1.071542 TGAGTGCGACTTTTGATGGGA 59.928 47.619 0.00 0.00 0.00 4.37
262 263 1.710244 TGATGGGATGTTGGTTGGAGT 59.290 47.619 0.00 0.00 0.00 3.85
413 417 4.644685 TCATCACAATGTCTAGATGGACGA 59.355 41.667 10.86 0.00 38.64 4.20
416 420 5.168569 TCACAATGTCTAGATGGACGAAAC 58.831 41.667 0.00 0.00 38.91 2.78
420 424 7.009631 CACAATGTCTAGATGGACGAAACTAAG 59.990 40.741 0.00 0.00 38.91 2.18
425 429 6.913673 GTCTAGATGGACGAAACTAAGATCAC 59.086 42.308 0.00 0.00 0.00 3.06
432 436 2.280628 GAAACTAAGATCACCGGGCTG 58.719 52.381 6.32 0.00 0.00 4.85
443 447 0.541863 ACCGGGCTGACCTAATCAAG 59.458 55.000 6.32 0.00 36.69 3.02
469 473 0.684479 GGCCAGCCCCTAAAGAAAGG 60.684 60.000 0.00 0.00 36.30 3.11
479 483 2.098117 CCTAAAGAAAGGGCATGCTTCG 59.902 50.000 18.92 1.24 32.55 3.79
495 499 2.898705 CTTCGCTAGATTGTGAGCCTT 58.101 47.619 0.00 0.00 35.13 4.35
509 513 1.855360 GAGCCTTAACATTCGAGCTCG 59.145 52.381 30.03 30.03 37.59 5.03
516 520 5.852229 CCTTAACATTCGAGCTCGTATACTC 59.148 44.000 33.33 0.00 40.80 2.59
577 581 9.708092 TGATCAACAATTTCTCAAATAATTGCA 57.292 25.926 0.00 0.00 42.62 4.08
578 582 9.962759 GATCAACAATTTCTCAAATAATTGCAC 57.037 29.630 0.00 0.00 42.62 4.57
579 583 8.309163 TCAACAATTTCTCAAATAATTGCACC 57.691 30.769 0.00 0.00 42.62 5.01
580 584 7.930325 TCAACAATTTCTCAAATAATTGCACCA 59.070 29.630 0.00 0.00 42.62 4.17
581 585 8.723311 CAACAATTTCTCAAATAATTGCACCAT 58.277 29.630 0.00 0.00 42.62 3.55
582 586 9.941325 AACAATTTCTCAAATAATTGCACCATA 57.059 25.926 0.00 0.00 42.62 2.74
583 587 9.941325 ACAATTTCTCAAATAATTGCACCATAA 57.059 25.926 0.00 0.00 42.62 1.90
587 591 8.984891 TTCTCAAATAATTGCACCATAAACTG 57.015 30.769 0.00 0.00 36.45 3.16
588 592 7.035004 TCTCAAATAATTGCACCATAAACTGC 58.965 34.615 0.00 0.00 36.45 4.40
589 593 6.105333 TCAAATAATTGCACCATAAACTGCC 58.895 36.000 0.00 0.00 36.45 4.85
590 594 2.652941 AATTGCACCATAAACTGCCG 57.347 45.000 0.00 0.00 31.97 5.69
591 595 0.173255 ATTGCACCATAAACTGCCGC 59.827 50.000 0.00 0.00 31.97 6.53
592 596 2.100216 GCACCATAAACTGCCGCG 59.900 61.111 0.00 0.00 0.00 6.46
593 597 2.100216 CACCATAAACTGCCGCGC 59.900 61.111 0.00 0.00 0.00 6.86
594 598 2.046314 ACCATAAACTGCCGCGCT 60.046 55.556 5.56 0.00 0.00 5.92
595 599 1.674322 ACCATAAACTGCCGCGCTT 60.674 52.632 5.56 0.00 0.00 4.68
596 600 1.062525 CCATAAACTGCCGCGCTTC 59.937 57.895 5.56 0.00 0.00 3.86
597 601 1.369091 CCATAAACTGCCGCGCTTCT 61.369 55.000 5.56 0.00 0.00 2.85
598 602 0.026803 CATAAACTGCCGCGCTTCTC 59.973 55.000 5.56 0.00 0.00 2.87
599 603 0.108138 ATAAACTGCCGCGCTTCTCT 60.108 50.000 5.56 0.00 0.00 3.10
600 604 0.528924 TAAACTGCCGCGCTTCTCTA 59.471 50.000 5.56 0.00 0.00 2.43
601 605 1.014564 AAACTGCCGCGCTTCTCTAC 61.015 55.000 5.56 0.00 0.00 2.59
602 606 1.878656 AACTGCCGCGCTTCTCTACT 61.879 55.000 5.56 0.00 0.00 2.57
603 607 1.153745 CTGCCGCGCTTCTCTACTT 60.154 57.895 5.56 0.00 0.00 2.24
604 608 1.416813 CTGCCGCGCTTCTCTACTTG 61.417 60.000 5.56 0.00 0.00 3.16
605 609 1.153823 GCCGCGCTTCTCTACTTGA 60.154 57.895 5.56 0.00 0.00 3.02
606 610 0.528684 GCCGCGCTTCTCTACTTGAT 60.529 55.000 5.56 0.00 0.00 2.57
607 611 1.269102 GCCGCGCTTCTCTACTTGATA 60.269 52.381 5.56 0.00 0.00 2.15
608 612 2.608261 GCCGCGCTTCTCTACTTGATAT 60.608 50.000 5.56 0.00 0.00 1.63
609 613 3.238441 CCGCGCTTCTCTACTTGATATC 58.762 50.000 5.56 0.00 0.00 1.63
610 614 3.238441 CGCGCTTCTCTACTTGATATCC 58.762 50.000 5.56 0.00 0.00 2.59
611 615 3.057876 CGCGCTTCTCTACTTGATATCCT 60.058 47.826 5.56 0.00 0.00 3.24
612 616 4.481463 GCGCTTCTCTACTTGATATCCTC 58.519 47.826 0.00 0.00 0.00 3.71
623 627 6.319048 ACTTGATATCCTCATTGACAACCT 57.681 37.500 0.00 0.00 32.72 3.50
646 650 1.105167 AATGCGATGCCACCTGGATG 61.105 55.000 0.00 0.00 37.39 3.51
668 672 3.186001 GTGCTGCTCATAAAGATCATCCG 59.814 47.826 0.00 0.00 0.00 4.18
669 673 3.070015 TGCTGCTCATAAAGATCATCCGA 59.930 43.478 0.00 0.00 0.00 4.55
682 686 2.163509 TCATCCGATAGTGCTAGAGCC 58.836 52.381 0.00 0.00 41.18 4.70
684 688 0.539901 TCCGATAGTGCTAGAGCCCC 60.540 60.000 0.00 0.00 41.18 5.80
685 689 0.540830 CCGATAGTGCTAGAGCCCCT 60.541 60.000 0.00 0.00 41.18 4.79
687 691 1.819697 CGATAGTGCTAGAGCCCCTGA 60.820 57.143 0.00 0.00 41.18 3.86
690 694 0.252467 AGTGCTAGAGCCCCTGAAGT 60.252 55.000 0.00 0.00 41.18 3.01
716 726 2.467566 TTTTGACGGGTTCTAGAGCC 57.532 50.000 16.91 16.91 42.68 4.70
721 731 2.042230 GGGTTCTAGAGCCCCCGA 60.042 66.667 29.68 0.00 45.12 5.14
804 1078 2.043652 AATGCCGAGCAGCCCAAT 60.044 55.556 4.90 0.00 43.65 3.16
810 1084 1.017387 CCGAGCAGCCCAATAACTTC 58.983 55.000 0.00 0.00 0.00 3.01
811 1085 1.017387 CGAGCAGCCCAATAACTTCC 58.983 55.000 0.00 0.00 0.00 3.46
812 1086 1.678728 CGAGCAGCCCAATAACTTCCA 60.679 52.381 0.00 0.00 0.00 3.53
813 1087 2.446435 GAGCAGCCCAATAACTTCCAA 58.554 47.619 0.00 0.00 0.00 3.53
814 1088 3.026694 GAGCAGCCCAATAACTTCCAAT 58.973 45.455 0.00 0.00 0.00 3.16
815 1089 3.026694 AGCAGCCCAATAACTTCCAATC 58.973 45.455 0.00 0.00 0.00 2.67
816 1090 2.223572 GCAGCCCAATAACTTCCAATCG 60.224 50.000 0.00 0.00 0.00 3.34
817 1091 2.358898 CAGCCCAATAACTTCCAATCGG 59.641 50.000 0.00 0.00 0.00 4.18
818 1092 1.681264 GCCCAATAACTTCCAATCGGG 59.319 52.381 0.00 0.00 38.37 5.14
819 1093 2.685522 GCCCAATAACTTCCAATCGGGA 60.686 50.000 0.00 0.00 46.61 5.14
833 1374 0.387929 TCGGGATCCAGCGTATGTTC 59.612 55.000 15.23 0.00 0.00 3.18
848 1389 4.629523 TTCGGCCCGAACACCACC 62.630 66.667 15.93 0.00 41.05 4.61
850 1391 4.636435 CGGCCCGAACACCACCTT 62.636 66.667 0.00 0.00 0.00 3.50
851 1392 2.203437 GGCCCGAACACCACCTTT 60.203 61.111 0.00 0.00 0.00 3.11
852 1393 1.830847 GGCCCGAACACCACCTTTT 60.831 57.895 0.00 0.00 0.00 2.27
853 1394 1.362355 GCCCGAACACCACCTTTTG 59.638 57.895 0.00 0.00 0.00 2.44
855 1396 1.107945 CCCGAACACCACCTTTTGTT 58.892 50.000 0.00 0.00 38.67 2.83
856 1397 1.478916 CCCGAACACCACCTTTTGTTT 59.521 47.619 0.00 0.00 36.06 2.83
857 1398 2.093921 CCCGAACACCACCTTTTGTTTT 60.094 45.455 0.00 0.00 36.06 2.43
858 1399 3.591023 CCGAACACCACCTTTTGTTTTT 58.409 40.909 0.00 0.00 36.06 1.94
859 1400 4.381718 CCCGAACACCACCTTTTGTTTTTA 60.382 41.667 0.00 0.00 36.06 1.52
860 1401 5.353111 CCGAACACCACCTTTTGTTTTTAT 58.647 37.500 0.00 0.00 36.06 1.40
861 1402 5.233263 CCGAACACCACCTTTTGTTTTTATG 59.767 40.000 0.00 0.00 36.06 1.90
863 1404 6.198216 CGAACACCACCTTTTGTTTTTATGAG 59.802 38.462 0.00 0.00 36.06 2.90
864 1405 6.538945 ACACCACCTTTTGTTTTTATGAGT 57.461 33.333 0.00 0.00 0.00 3.41
865 1406 6.337356 ACACCACCTTTTGTTTTTATGAGTG 58.663 36.000 0.00 0.00 0.00 3.51
887 1573 2.976882 ACTCGGGCCTTATATAAAGCCA 59.023 45.455 28.33 13.75 43.08 4.75
889 1575 3.941483 CTCGGGCCTTATATAAAGCCATG 59.059 47.826 28.33 21.64 43.08 3.66
922 1610 1.213182 TGGGAAACAAGCCTACACACA 59.787 47.619 0.00 0.00 0.00 3.72
925 1613 2.685897 GGAAACAAGCCTACACACACAA 59.314 45.455 0.00 0.00 0.00 3.33
926 1614 3.129638 GGAAACAAGCCTACACACACAAA 59.870 43.478 0.00 0.00 0.00 2.83
1044 1741 2.268920 TGCAACTGCGGAGATCCC 59.731 61.111 12.26 0.00 45.83 3.85
1062 1759 1.602237 CGTGACCATGCCCTACCTT 59.398 57.895 0.00 0.00 0.00 3.50
1272 1972 3.379445 AAGGACGACGCCACCGAT 61.379 61.111 10.28 0.00 38.29 4.18
1386 2086 0.892755 ACGAGTACGAAGGATGGCAA 59.107 50.000 0.00 0.00 42.66 4.52
1401 2101 4.525576 CAATGCGCGCGATGCACT 62.526 61.111 37.18 14.61 46.57 4.40
1447 2147 4.135153 CGGGCGTCCAGGTCTCTG 62.135 72.222 6.96 0.00 40.59 3.35
1467 2167 0.681733 CGAGATCCATGGATTCGGGT 59.318 55.000 30.98 14.72 34.63 5.28
1547 2247 1.210478 GCTATCCTGCAGACCTTCCAA 59.790 52.381 17.39 0.00 0.00 3.53
1599 2299 3.435186 GGAAGCCGGCTGCAGTTC 61.435 66.667 35.35 24.99 44.83 3.01
1607 2307 2.653115 GCTGCAGTTCCAAAGCCC 59.347 61.111 16.64 0.00 0.00 5.19
1643 2343 1.991230 CCCTCCTCCGTGGATGTTT 59.009 57.895 0.00 0.00 45.16 2.83
1656 2356 0.716108 GATGTTTGAGCTCGTCACCG 59.284 55.000 9.64 0.00 33.71 4.94
1658 2358 1.664965 GTTTGAGCTCGTCACCGCT 60.665 57.895 9.64 0.00 39.61 5.52
1746 2446 4.643387 GCTGCGGGGAACACCACT 62.643 66.667 0.00 0.00 42.91 4.00
1791 2491 3.839432 CGGAGGAGAAGGACGGCC 61.839 72.222 0.00 0.00 0.00 6.13
1911 2611 1.080093 GAGGTCATCGCCGTCAACA 60.080 57.895 0.00 0.00 0.00 3.33
1975 2675 1.377987 GGTTCCCCGCATTGCACTA 60.378 57.895 9.69 0.00 0.00 2.74
1977 2677 0.958382 GTTCCCCGCATTGCACTACA 60.958 55.000 9.69 0.00 0.00 2.74
2024 2729 2.160615 CGATCAACCATGCCGTGTTTTA 59.839 45.455 0.00 0.00 0.00 1.52
2025 2730 3.498082 GATCAACCATGCCGTGTTTTAC 58.502 45.455 0.00 0.00 0.00 2.01
2026 2731 2.577700 TCAACCATGCCGTGTTTTACT 58.422 42.857 0.00 0.00 0.00 2.24
2027 2732 2.292016 TCAACCATGCCGTGTTTTACTG 59.708 45.455 0.00 0.00 0.00 2.74
2028 2733 1.975660 ACCATGCCGTGTTTTACTGT 58.024 45.000 0.00 0.00 0.00 3.55
2058 2763 2.781174 TCTGGGAGTGGTTGGTAGTTTT 59.219 45.455 0.00 0.00 0.00 2.43
2121 2826 1.081242 GCATGGCAACCTGTTCGTG 60.081 57.895 0.00 0.00 34.29 4.35
2190 2895 0.970937 GGATGACTCACCTCGGGACA 60.971 60.000 0.00 0.00 0.00 4.02
2208 2913 2.036475 GACAGCAGACTTCTCCAAGACA 59.964 50.000 0.00 0.00 33.34 3.41
2292 2997 4.742201 CACCACCGAGGCCACGAG 62.742 72.222 24.92 15.88 43.14 4.18
2553 3259 2.990479 GATCGGCACCCTCCTGTT 59.010 61.111 0.00 0.00 0.00 3.16
2557 3263 0.834687 TCGGCACCCTCCTGTTACTT 60.835 55.000 0.00 0.00 0.00 2.24
2573 3279 8.311836 TCCTGTTACTTTTAATCTGACAGTAGG 58.688 37.037 1.59 0.00 33.12 3.18
2582 3288 8.418597 TTTAATCTGACAGTAGGTGTAGACTT 57.581 34.615 1.59 0.00 40.56 3.01
2583 3289 5.906113 ATCTGACAGTAGGTGTAGACTTG 57.094 43.478 1.59 0.00 40.56 3.16
2584 3290 4.726583 TCTGACAGTAGGTGTAGACTTGT 58.273 43.478 1.59 0.00 40.56 3.16
2585 3291 5.872963 TCTGACAGTAGGTGTAGACTTGTA 58.127 41.667 1.59 0.00 40.56 2.41
2586 3292 5.704515 TCTGACAGTAGGTGTAGACTTGTAC 59.295 44.000 1.59 0.00 40.56 2.90
2599 3305 7.802251 GTGTAGACTTGTACTGTACTGTAGTTG 59.198 40.741 17.98 8.15 0.00 3.16
2800 3509 2.688958 CCCGTTCGACTTCTAGGAGATT 59.311 50.000 4.59 0.00 0.00 2.40
2802 3511 3.109619 CGTTCGACTTCTAGGAGATTGC 58.890 50.000 4.59 0.00 0.00 3.56
2932 3655 3.349927 TGATCGAGGAACTTCGGAACTA 58.650 45.455 6.50 0.00 41.55 2.24
2933 3656 3.128242 TGATCGAGGAACTTCGGAACTAC 59.872 47.826 6.50 0.00 41.55 2.73
2934 3657 2.787994 TCGAGGAACTTCGGAACTACT 58.212 47.619 6.50 0.00 41.55 2.57
2935 3658 3.152341 TCGAGGAACTTCGGAACTACTT 58.848 45.455 6.50 0.00 41.55 2.24
2936 3659 4.326826 TCGAGGAACTTCGGAACTACTTA 58.673 43.478 6.50 0.00 41.55 2.24
2941 3664 4.802563 GGAACTTCGGAACTACTTATTCGG 59.197 45.833 0.00 0.00 0.00 4.30
3197 5257 5.034554 CATCCGTGCATGTTATGGTATTC 57.965 43.478 4.96 0.00 0.00 1.75
3225 5285 1.903183 GAGGTGCTTCAGTAGGAGGTT 59.097 52.381 0.00 0.00 0.00 3.50
3235 5295 0.404426 GTAGGAGGTTTGGGGCTTGT 59.596 55.000 0.00 0.00 0.00 3.16
3325 5385 5.009510 TGTGTGTTACAAATTCTGGGTGATG 59.990 40.000 0.00 0.00 36.06 3.07
3403 5465 5.918608 AGACTACATGCGGACAGAAATAAT 58.081 37.500 0.00 0.00 0.00 1.28
3404 5466 5.986135 AGACTACATGCGGACAGAAATAATC 59.014 40.000 0.00 0.00 0.00 1.75
3405 5467 5.670485 ACTACATGCGGACAGAAATAATCA 58.330 37.500 0.00 0.00 0.00 2.57
3406 5468 6.112734 ACTACATGCGGACAGAAATAATCAA 58.887 36.000 0.00 0.00 0.00 2.57
3407 5469 5.895636 ACATGCGGACAGAAATAATCAAA 57.104 34.783 0.00 0.00 0.00 2.69
3408 5470 6.455360 ACATGCGGACAGAAATAATCAAAT 57.545 33.333 0.00 0.00 0.00 2.32
3409 5471 7.566760 ACATGCGGACAGAAATAATCAAATA 57.433 32.000 0.00 0.00 0.00 1.40
3410 5472 7.995289 ACATGCGGACAGAAATAATCAAATAA 58.005 30.769 0.00 0.00 0.00 1.40
3411 5473 8.131100 ACATGCGGACAGAAATAATCAAATAAG 58.869 33.333 0.00 0.00 0.00 1.73
3412 5474 7.624360 TGCGGACAGAAATAATCAAATAAGT 57.376 32.000 0.00 0.00 0.00 2.24
3413 5475 7.471721 TGCGGACAGAAATAATCAAATAAGTG 58.528 34.615 0.00 0.00 0.00 3.16
3414 5476 7.335673 TGCGGACAGAAATAATCAAATAAGTGA 59.664 33.333 0.00 0.00 0.00 3.41
3415 5477 8.181573 GCGGACAGAAATAATCAAATAAGTGAA 58.818 33.333 0.00 0.00 0.00 3.18
3446 5508 9.444600 ACACTAGACCGTGTTTATATGATTTTT 57.555 29.630 0.00 0.00 45.27 1.94
3466 5528 4.935352 TTTGTTGAAAAGGACCATCTGG 57.065 40.909 0.00 0.00 42.17 3.86
3467 5529 2.875296 TGTTGAAAAGGACCATCTGGG 58.125 47.619 0.54 0.00 44.81 4.45
3468 5530 1.546029 GTTGAAAAGGACCATCTGGGC 59.454 52.381 0.54 0.00 44.61 5.36
3469 5531 0.322456 TGAAAAGGACCATCTGGGCG 60.322 55.000 0.54 0.00 47.00 6.13
3470 5532 0.035439 GAAAAGGACCATCTGGGCGA 60.035 55.000 0.54 0.00 47.00 5.54
3471 5533 0.404040 AAAAGGACCATCTGGGCGAA 59.596 50.000 0.54 0.00 47.00 4.70
3472 5534 0.625849 AAAGGACCATCTGGGCGAAT 59.374 50.000 0.54 0.00 47.00 3.34
3473 5535 0.107017 AAGGACCATCTGGGCGAATG 60.107 55.000 0.54 0.00 47.00 2.67
3474 5536 0.982852 AGGACCATCTGGGCGAATGA 60.983 55.000 0.54 0.00 47.00 2.57
3475 5537 0.107214 GGACCATCTGGGCGAATGAA 60.107 55.000 0.54 0.00 47.00 2.57
3476 5538 1.477558 GGACCATCTGGGCGAATGAAT 60.478 52.381 0.54 0.00 47.00 2.57
3477 5539 2.301346 GACCATCTGGGCGAATGAATT 58.699 47.619 0.54 0.00 42.05 2.17
3478 5540 2.026641 ACCATCTGGGCGAATGAATTG 58.973 47.619 0.54 0.00 42.05 2.32
3479 5541 2.300433 CCATCTGGGCGAATGAATTGA 58.700 47.619 0.00 0.00 0.00 2.57
3480 5542 2.033801 CCATCTGGGCGAATGAATTGAC 59.966 50.000 0.00 0.00 0.00 3.18
3481 5543 2.488204 TCTGGGCGAATGAATTGACA 57.512 45.000 0.00 0.00 0.00 3.58
3482 5544 2.789213 TCTGGGCGAATGAATTGACAA 58.211 42.857 0.00 0.00 0.00 3.18
3483 5545 3.153130 TCTGGGCGAATGAATTGACAAA 58.847 40.909 0.00 0.00 0.00 2.83
3484 5546 3.571828 TCTGGGCGAATGAATTGACAAAA 59.428 39.130 0.00 0.00 0.00 2.44
3485 5547 4.038522 TCTGGGCGAATGAATTGACAAAAA 59.961 37.500 0.00 0.00 0.00 1.94
3500 5562 3.745723 AAAAAGACCACCTGCCGAT 57.254 47.368 0.00 0.00 0.00 4.18
3501 5563 2.871096 AAAAAGACCACCTGCCGATA 57.129 45.000 0.00 0.00 0.00 2.92
3502 5564 2.871096 AAAAGACCACCTGCCGATAA 57.129 45.000 0.00 0.00 0.00 1.75
3503 5565 2.871096 AAAGACCACCTGCCGATAAA 57.129 45.000 0.00 0.00 0.00 1.40
3504 5566 3.366052 AAAGACCACCTGCCGATAAAT 57.634 42.857 0.00 0.00 0.00 1.40
3505 5567 3.366052 AAGACCACCTGCCGATAAATT 57.634 42.857 0.00 0.00 0.00 1.82
3506 5568 3.366052 AGACCACCTGCCGATAAATTT 57.634 42.857 0.00 0.00 0.00 1.82
3507 5569 4.497291 AGACCACCTGCCGATAAATTTA 57.503 40.909 0.00 0.00 0.00 1.40
3508 5570 4.850680 AGACCACCTGCCGATAAATTTAA 58.149 39.130 1.21 0.00 0.00 1.52
3509 5571 4.638865 AGACCACCTGCCGATAAATTTAAC 59.361 41.667 1.21 0.00 0.00 2.01
3510 5572 4.337145 ACCACCTGCCGATAAATTTAACA 58.663 39.130 1.21 0.00 0.00 2.41
3511 5573 4.767928 ACCACCTGCCGATAAATTTAACAA 59.232 37.500 1.21 0.00 0.00 2.83
3512 5574 5.244178 ACCACCTGCCGATAAATTTAACAAA 59.756 36.000 1.21 0.00 0.00 2.83
3513 5575 6.159988 CCACCTGCCGATAAATTTAACAAAA 58.840 36.000 1.21 0.00 0.00 2.44
3514 5576 6.647067 CCACCTGCCGATAAATTTAACAAAAA 59.353 34.615 1.21 0.00 0.00 1.94
3515 5577 7.148656 CCACCTGCCGATAAATTTAACAAAAAG 60.149 37.037 1.21 0.00 0.00 2.27
3516 5578 6.871492 ACCTGCCGATAAATTTAACAAAAAGG 59.129 34.615 1.21 8.00 0.00 3.11
3517 5579 7.093992 CCTGCCGATAAATTTAACAAAAAGGA 58.906 34.615 1.21 0.00 0.00 3.36
3518 5580 7.062956 CCTGCCGATAAATTTAACAAAAAGGAC 59.937 37.037 1.21 0.00 0.00 3.85
3519 5581 6.869388 TGCCGATAAATTTAACAAAAAGGACC 59.131 34.615 1.21 0.00 0.00 4.46
3520 5582 6.311935 GCCGATAAATTTAACAAAAAGGACCC 59.688 38.462 1.21 0.00 0.00 4.46
3521 5583 6.814644 CCGATAAATTTAACAAAAAGGACCCC 59.185 38.462 1.21 0.00 0.00 4.95
3522 5584 6.814644 CGATAAATTTAACAAAAAGGACCCCC 59.185 38.462 1.21 0.00 0.00 5.40
3524 5586 5.818678 AATTTAACAAAAAGGACCCCCTC 57.181 39.130 0.00 0.00 43.48 4.30
3525 5587 2.572209 TAACAAAAAGGACCCCCTCG 57.428 50.000 0.00 0.00 43.48 4.63
3526 5588 0.178973 AACAAAAAGGACCCCCTCGG 60.179 55.000 0.00 0.00 43.48 4.63
3527 5589 1.977009 CAAAAAGGACCCCCTCGGC 60.977 63.158 0.00 0.00 43.48 5.54
3528 5590 2.160853 AAAAAGGACCCCCTCGGCT 61.161 57.895 0.00 0.00 43.48 5.52
3529 5591 2.426305 AAAAAGGACCCCCTCGGCTG 62.426 60.000 0.00 0.00 43.48 4.85
3530 5592 4.658786 AAGGACCCCCTCGGCTGT 62.659 66.667 0.00 0.00 43.48 4.40
3579 5641 4.034258 CTGCCGCCACACAGCAAG 62.034 66.667 0.00 0.00 35.79 4.01
3586 5648 4.034258 CACACAGCAAGGCGGCAG 62.034 66.667 13.08 4.12 35.83 4.85
3597 5659 2.668212 GCGGCAGCACTGTACCAA 60.668 61.111 3.18 0.00 44.35 3.67
3598 5660 2.966309 GCGGCAGCACTGTACCAAC 61.966 63.158 3.18 0.00 44.35 3.77
3599 5661 2.667318 CGGCAGCACTGTACCAACG 61.667 63.158 0.00 0.00 0.00 4.10
3600 5662 2.325082 GGCAGCACTGTACCAACGG 61.325 63.158 0.00 0.00 38.04 4.44
3601 5663 2.325082 GCAGCACTGTACCAACGGG 61.325 63.158 0.00 0.00 36.19 5.28
3602 5664 1.369692 CAGCACTGTACCAACGGGA 59.630 57.895 0.00 0.00 36.19 5.14
3603 5665 0.250124 CAGCACTGTACCAACGGGAA 60.250 55.000 0.00 0.00 36.19 3.97
3604 5666 0.690762 AGCACTGTACCAACGGGAAT 59.309 50.000 0.00 0.00 36.19 3.01
3605 5667 1.084289 GCACTGTACCAACGGGAATC 58.916 55.000 0.00 0.00 36.19 2.52
3606 5668 1.355971 CACTGTACCAACGGGAATCG 58.644 55.000 0.00 0.00 45.88 3.34
3607 5669 0.248289 ACTGTACCAACGGGAATCGG 59.752 55.000 0.00 0.00 44.45 4.18
3608 5670 1.078988 TGTACCAACGGGAATCGGC 60.079 57.895 0.00 0.00 44.45 5.54
3609 5671 2.169146 GTACCAACGGGAATCGGCG 61.169 63.158 0.00 0.00 44.45 6.46
3612 5674 3.864686 CAACGGGAATCGGCGCTG 61.865 66.667 10.86 10.86 44.45 5.18
3666 5728 3.052082 CAAGGGACGTGGCAGCAG 61.052 66.667 0.00 0.00 33.25 4.24
3667 5729 3.560251 AAGGGACGTGGCAGCAGT 61.560 61.111 0.00 0.00 0.00 4.40
3668 5730 2.214216 AAGGGACGTGGCAGCAGTA 61.214 57.895 0.00 0.00 0.00 2.74
3669 5731 2.434359 GGGACGTGGCAGCAGTAC 60.434 66.667 0.00 0.00 0.00 2.73
3670 5732 2.657237 GGACGTGGCAGCAGTACT 59.343 61.111 0.00 0.00 0.00 2.73
3680 5742 0.537188 CAGCAGTACTGTACCTGGGG 59.463 60.000 23.44 0.00 41.86 4.96
3681 5743 1.221021 GCAGTACTGTACCTGGGGC 59.779 63.158 23.44 2.51 0.00 5.80
3682 5744 1.515954 CAGTACTGTACCTGGGGCG 59.484 63.158 15.06 0.00 0.00 6.13
3683 5745 2.186125 GTACTGTACCTGGGGCGC 59.814 66.667 6.70 0.00 0.00 6.53
3684 5746 3.454573 TACTGTACCTGGGGCGCG 61.455 66.667 0.00 0.00 0.00 6.86
3718 5780 3.818787 GCGGCAGCCCTGTTCATG 61.819 66.667 5.63 0.00 37.42 3.07
3719 5781 3.136123 CGGCAGCCCTGTTCATGG 61.136 66.667 5.63 0.00 0.00 3.66
3724 5786 3.818787 GCCCTGTTCATGGCGCTG 61.819 66.667 7.64 0.00 38.00 5.18
3725 5787 3.818787 CCCTGTTCATGGCGCTGC 61.819 66.667 7.64 0.00 0.00 5.25
3726 5788 2.749044 CCTGTTCATGGCGCTGCT 60.749 61.111 7.64 0.00 0.00 4.24
3727 5789 2.483745 CTGTTCATGGCGCTGCTG 59.516 61.111 7.64 2.42 0.00 4.41
3728 5790 3.678717 CTGTTCATGGCGCTGCTGC 62.679 63.158 7.64 5.34 0.00 5.25
3729 5791 3.437795 GTTCATGGCGCTGCTGCT 61.438 61.111 14.03 0.00 36.97 4.24
3730 5792 3.129502 TTCATGGCGCTGCTGCTC 61.130 61.111 14.03 5.44 36.97 4.26
3731 5793 3.617143 TTCATGGCGCTGCTGCTCT 62.617 57.895 14.03 2.34 36.97 4.09
3732 5794 2.202974 CATGGCGCTGCTGCTCTA 60.203 61.111 14.03 3.87 36.97 2.43
3733 5795 2.202987 ATGGCGCTGCTGCTCTAC 60.203 61.111 14.03 1.87 36.97 2.59
3734 5796 2.729479 ATGGCGCTGCTGCTCTACT 61.729 57.895 14.03 0.00 36.97 2.57
3735 5797 2.889503 GGCGCTGCTGCTCTACTG 60.890 66.667 14.03 0.00 36.97 2.74
3736 5798 3.562150 GCGCTGCTGCTCTACTGC 61.562 66.667 14.03 4.65 43.16 4.40
3738 5800 2.451167 CGCTGCTGCTCTACTGCAC 61.451 63.158 14.03 0.00 46.94 4.57
3739 5801 2.451167 GCTGCTGCTCTACTGCACG 61.451 63.158 8.53 0.00 46.94 5.34
3740 5802 2.433145 TGCTGCTCTACTGCACGC 60.433 61.111 0.00 0.00 46.94 5.34
3741 5803 2.125753 GCTGCTCTACTGCACGCT 60.126 61.111 0.00 0.00 42.45 5.07
3742 5804 1.139734 GCTGCTCTACTGCACGCTA 59.860 57.895 0.00 0.00 42.45 4.26
3743 5805 1.142778 GCTGCTCTACTGCACGCTAC 61.143 60.000 0.00 0.00 42.45 3.58
3744 5806 0.863538 CTGCTCTACTGCACGCTACG 60.864 60.000 0.00 0.00 38.12 3.51
3745 5807 2.224885 GCTCTACTGCACGCTACGC 61.225 63.158 0.00 0.00 0.00 4.42
3746 5808 1.429825 CTCTACTGCACGCTACGCT 59.570 57.895 0.00 0.00 0.00 5.07
3747 5809 0.863538 CTCTACTGCACGCTACGCTG 60.864 60.000 0.00 0.00 0.00 5.18
3748 5810 1.136774 CTACTGCACGCTACGCTGA 59.863 57.895 0.00 0.00 33.08 4.26
3749 5811 0.248661 CTACTGCACGCTACGCTGAT 60.249 55.000 0.00 0.00 33.08 2.90
3750 5812 0.172578 TACTGCACGCTACGCTGATT 59.827 50.000 0.00 0.00 33.08 2.57
3751 5813 1.346197 CTGCACGCTACGCTGATTG 59.654 57.895 0.00 0.00 0.00 2.67
3752 5814 2.021931 GCACGCTACGCTGATTGC 59.978 61.111 0.00 0.00 38.57 3.56
3753 5815 2.456119 GCACGCTACGCTGATTGCT 61.456 57.895 0.00 0.00 40.11 3.91
3754 5816 1.145759 GCACGCTACGCTGATTGCTA 61.146 55.000 0.00 0.00 40.11 3.49
3755 5817 0.572590 CACGCTACGCTGATTGCTAC 59.427 55.000 0.00 0.00 40.11 3.58
3756 5818 0.456221 ACGCTACGCTGATTGCTACT 59.544 50.000 0.00 0.00 40.11 2.57
3757 5819 0.848942 CGCTACGCTGATTGCTACTG 59.151 55.000 0.00 0.00 40.11 2.74
3758 5820 0.579156 GCTACGCTGATTGCTACTGC 59.421 55.000 0.00 0.00 40.11 4.40
3759 5821 1.804372 GCTACGCTGATTGCTACTGCT 60.804 52.381 0.00 0.00 40.48 4.24
3760 5822 1.857217 CTACGCTGATTGCTACTGCTG 59.143 52.381 0.00 0.00 40.48 4.41
3761 5823 1.351012 CGCTGATTGCTACTGCTGC 59.649 57.895 0.00 0.00 40.48 5.25
3762 5824 1.088340 CGCTGATTGCTACTGCTGCT 61.088 55.000 0.00 0.00 40.48 4.24
3763 5825 0.377554 GCTGATTGCTACTGCTGCTG 59.622 55.000 4.89 4.89 40.48 4.41
3764 5826 0.377554 CTGATTGCTACTGCTGCTGC 59.622 55.000 8.89 8.89 40.48 5.25
3773 5835 3.676605 TGCTGCTGCATGCGCTTT 61.677 55.556 26.54 0.00 45.31 3.51
3774 5836 2.431942 GCTGCTGCATGCGCTTTT 60.432 55.556 26.54 0.00 46.63 2.27
3775 5837 1.153978 GCTGCTGCATGCGCTTTTA 60.154 52.632 26.54 11.95 46.63 1.52
3776 5838 1.138047 GCTGCTGCATGCGCTTTTAG 61.138 55.000 26.54 19.09 46.63 1.85
3777 5839 1.138047 CTGCTGCATGCGCTTTTAGC 61.138 55.000 26.54 21.86 46.63 3.09
3778 5840 1.875364 GCTGCATGCGCTTTTAGCC 60.875 57.895 21.78 3.97 38.18 3.93
3779 5841 1.584483 CTGCATGCGCTTTTAGCCG 60.584 57.895 14.09 0.00 38.18 5.52
3780 5842 2.278142 GCATGCGCTTTTAGCCGG 60.278 61.111 9.73 0.00 38.18 6.13
3781 5843 2.278142 CATGCGCTTTTAGCCGGC 60.278 61.111 21.89 21.89 38.18 6.13
3782 5844 3.518068 ATGCGCTTTTAGCCGGCC 61.518 61.111 26.15 5.24 38.18 6.13
3784 5846 4.476410 GCGCTTTTAGCCGGCCAC 62.476 66.667 26.15 5.28 38.18 5.01
3785 5847 2.746277 CGCTTTTAGCCGGCCACT 60.746 61.111 26.15 7.52 38.18 4.00
3786 5848 2.877691 GCTTTTAGCCGGCCACTG 59.122 61.111 26.15 11.32 34.48 3.66
3787 5849 2.877691 CTTTTAGCCGGCCACTGC 59.122 61.111 26.15 1.36 0.00 4.40
3788 5850 1.675641 CTTTTAGCCGGCCACTGCT 60.676 57.895 26.15 14.96 40.45 4.24
3789 5851 1.926511 CTTTTAGCCGGCCACTGCTG 61.927 60.000 26.15 3.76 43.89 4.41
3794 5856 4.790962 CCGGCCACTGCTGCTGAT 62.791 66.667 13.69 0.00 42.87 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.570607 AGGAACATAGGATTAGGGGATATGATC 59.429 40.741 0.00 0.00 0.00 2.92
59 60 0.449388 GCTTCTCCACATTCAAGCGG 59.551 55.000 0.00 0.00 32.47 5.52
60 61 1.159285 TGCTTCTCCACATTCAAGCG 58.841 50.000 0.00 0.00 43.55 4.68
65 66 4.771590 TGACAAATGCTTCTCCACATTC 57.228 40.909 0.00 0.00 35.49 2.67
72 73 7.647907 ACATTGAATTTGACAAATGCTTCTC 57.352 32.000 17.93 10.48 0.00 2.87
93 94 2.765699 ACAAGTGCCCTTTGTTCAACAT 59.234 40.909 0.00 0.00 35.32 2.71
97 98 1.846007 ACACAAGTGCCCTTTGTTCA 58.154 45.000 0.00 0.00 36.67 3.18
113 114 3.149196 TCCTCTTTCTTCATGCCAACAC 58.851 45.455 0.00 0.00 0.00 3.32
138 139 4.137543 CAGGTAGGAGTTGCAAAAGTTCT 58.862 43.478 0.00 0.00 0.00 3.01
154 155 6.469410 TCTTAACCAAACATACACCAGGTAG 58.531 40.000 0.00 0.00 34.92 3.18
156 157 5.313280 TCTTAACCAAACATACACCAGGT 57.687 39.130 0.00 0.00 0.00 4.00
161 162 5.163794 CGGTGGATCTTAACCAAACATACAC 60.164 44.000 11.59 0.00 39.22 2.90
249 250 2.341846 ACGACAACTCCAACCAACAT 57.658 45.000 0.00 0.00 0.00 2.71
332 334 8.996024 AAAAAGTTGCACAATGTTTTACTACT 57.004 26.923 0.00 0.00 0.00 2.57
402 406 6.210078 GGTGATCTTAGTTTCGTCCATCTAG 58.790 44.000 0.00 0.00 0.00 2.43
405 409 3.797256 CGGTGATCTTAGTTTCGTCCATC 59.203 47.826 0.00 0.00 0.00 3.51
408 412 2.537401 CCGGTGATCTTAGTTTCGTCC 58.463 52.381 0.00 0.00 0.00 4.79
413 417 1.906574 TCAGCCCGGTGATCTTAGTTT 59.093 47.619 0.00 0.00 0.00 2.66
416 420 0.105039 GGTCAGCCCGGTGATCTTAG 59.895 60.000 0.00 0.00 0.00 2.18
420 424 0.759346 ATTAGGTCAGCCCGGTGATC 59.241 55.000 0.00 0.00 38.74 2.92
425 429 0.815615 GCTTGATTAGGTCAGCCCGG 60.816 60.000 0.00 0.00 38.29 5.73
432 436 0.947244 CCGCCATGCTTGATTAGGTC 59.053 55.000 0.22 0.00 0.00 3.85
479 483 5.277058 CGAATGTTAAGGCTCACAATCTAGC 60.277 44.000 11.18 0.00 38.03 3.42
495 499 5.996669 TGAGTATACGAGCTCGAATGTTA 57.003 39.130 40.58 22.85 43.02 2.41
572 576 0.173255 GCGGCAGTTTATGGTGCAAT 59.827 50.000 0.00 0.00 41.75 3.56
573 577 1.583986 GCGGCAGTTTATGGTGCAA 59.416 52.632 0.00 0.00 41.75 4.08
574 578 2.685829 CGCGGCAGTTTATGGTGCA 61.686 57.895 0.00 0.00 41.75 4.57
575 579 2.100216 CGCGGCAGTTTATGGTGC 59.900 61.111 0.00 0.00 39.08 5.01
576 580 1.922135 AAGCGCGGCAGTTTATGGTG 61.922 55.000 8.83 0.00 0.00 4.17
577 581 1.644786 GAAGCGCGGCAGTTTATGGT 61.645 55.000 8.83 0.00 0.00 3.55
578 582 1.062525 GAAGCGCGGCAGTTTATGG 59.937 57.895 8.83 0.00 0.00 2.74
579 583 0.026803 GAGAAGCGCGGCAGTTTATG 59.973 55.000 8.83 0.00 0.00 1.90
580 584 0.108138 AGAGAAGCGCGGCAGTTTAT 60.108 50.000 8.83 0.00 0.00 1.40
581 585 0.528924 TAGAGAAGCGCGGCAGTTTA 59.471 50.000 8.83 0.00 0.00 2.01
582 586 1.014564 GTAGAGAAGCGCGGCAGTTT 61.015 55.000 8.83 0.00 0.00 2.66
583 587 1.446272 GTAGAGAAGCGCGGCAGTT 60.446 57.895 8.83 0.00 0.00 3.16
584 588 1.878656 AAGTAGAGAAGCGCGGCAGT 61.879 55.000 8.83 0.00 0.00 4.40
585 589 1.153745 AAGTAGAGAAGCGCGGCAG 60.154 57.895 8.83 0.00 0.00 4.85
586 590 1.446099 CAAGTAGAGAAGCGCGGCA 60.446 57.895 8.83 0.00 0.00 5.69
587 591 0.528684 ATCAAGTAGAGAAGCGCGGC 60.529 55.000 8.83 0.00 0.00 6.53
588 592 2.776312 TATCAAGTAGAGAAGCGCGG 57.224 50.000 8.83 0.00 0.00 6.46
589 593 3.057876 AGGATATCAAGTAGAGAAGCGCG 60.058 47.826 0.00 0.00 0.00 6.86
590 594 4.022762 TGAGGATATCAAGTAGAGAAGCGC 60.023 45.833 0.00 0.00 34.02 5.92
591 595 5.697473 TGAGGATATCAAGTAGAGAAGCG 57.303 43.478 4.83 0.00 34.02 4.68
592 596 7.598493 GTCAATGAGGATATCAAGTAGAGAAGC 59.402 40.741 4.83 0.00 42.53 3.86
593 597 8.637099 TGTCAATGAGGATATCAAGTAGAGAAG 58.363 37.037 4.83 0.00 42.53 2.85
594 598 8.539117 TGTCAATGAGGATATCAAGTAGAGAA 57.461 34.615 4.83 0.00 42.53 2.87
595 599 8.417106 GTTGTCAATGAGGATATCAAGTAGAGA 58.583 37.037 4.83 0.00 42.53 3.10
596 600 7.655328 GGTTGTCAATGAGGATATCAAGTAGAG 59.345 40.741 4.83 0.00 42.53 2.43
597 601 7.345653 AGGTTGTCAATGAGGATATCAAGTAGA 59.654 37.037 4.83 0.00 42.53 2.59
598 602 7.504403 AGGTTGTCAATGAGGATATCAAGTAG 58.496 38.462 4.83 0.00 42.53 2.57
599 603 7.437713 AGGTTGTCAATGAGGATATCAAGTA 57.562 36.000 4.83 0.00 42.53 2.24
600 604 6.319048 AGGTTGTCAATGAGGATATCAAGT 57.681 37.500 4.83 0.00 42.53 3.16
601 605 6.459298 GCAAGGTTGTCAATGAGGATATCAAG 60.459 42.308 4.83 0.00 42.53 3.02
602 606 5.357878 GCAAGGTTGTCAATGAGGATATCAA 59.642 40.000 4.83 0.00 42.53 2.57
603 607 4.883585 GCAAGGTTGTCAATGAGGATATCA 59.116 41.667 4.83 0.00 43.70 2.15
604 608 4.883585 TGCAAGGTTGTCAATGAGGATATC 59.116 41.667 0.00 0.00 0.00 1.63
605 609 4.858850 TGCAAGGTTGTCAATGAGGATAT 58.141 39.130 0.00 0.00 0.00 1.63
606 610 4.299586 TGCAAGGTTGTCAATGAGGATA 57.700 40.909 0.00 0.00 0.00 2.59
607 611 3.159213 TGCAAGGTTGTCAATGAGGAT 57.841 42.857 0.00 0.00 0.00 3.24
608 612 2.655090 TGCAAGGTTGTCAATGAGGA 57.345 45.000 0.00 0.00 0.00 3.71
609 613 3.581755 CATTGCAAGGTTGTCAATGAGG 58.418 45.455 22.17 7.24 45.12 3.86
610 614 2.991190 GCATTGCAAGGTTGTCAATGAG 59.009 45.455 26.52 13.26 45.12 2.90
611 615 2.607526 CGCATTGCAAGGTTGTCAATGA 60.608 45.455 26.52 0.00 45.12 2.57
612 616 1.722464 CGCATTGCAAGGTTGTCAATG 59.278 47.619 22.24 22.24 45.11 2.82
623 627 1.978080 AGGTGGCATCGCATTGCAA 60.978 52.632 9.69 0.00 44.59 4.08
668 672 2.002505 TCAGGGGCTCTAGCACTATC 57.997 55.000 3.89 0.00 45.56 2.08
669 673 2.324541 CTTCAGGGGCTCTAGCACTAT 58.675 52.381 3.89 0.00 45.56 2.12
706 716 1.415200 ATCTTCGGGGGCTCTAGAAC 58.585 55.000 0.00 0.00 0.00 3.01
708 718 3.544698 ATTATCTTCGGGGGCTCTAGA 57.455 47.619 0.00 0.00 0.00 2.43
710 720 2.038557 GCAATTATCTTCGGGGGCTCTA 59.961 50.000 0.00 0.00 0.00 2.43
711 721 1.202818 GCAATTATCTTCGGGGGCTCT 60.203 52.381 0.00 0.00 0.00 4.09
712 722 1.239347 GCAATTATCTTCGGGGGCTC 58.761 55.000 0.00 0.00 0.00 4.70
713 723 0.550914 TGCAATTATCTTCGGGGGCT 59.449 50.000 0.00 0.00 0.00 5.19
714 724 0.954452 CTGCAATTATCTTCGGGGGC 59.046 55.000 0.00 0.00 0.00 5.80
715 725 2.498167 CTCTGCAATTATCTTCGGGGG 58.502 52.381 0.00 0.00 0.00 5.40
716 726 2.104792 TCCTCTGCAATTATCTTCGGGG 59.895 50.000 0.00 0.00 0.00 5.73
717 727 3.475566 TCCTCTGCAATTATCTTCGGG 57.524 47.619 0.00 0.00 0.00 5.14
718 728 3.999663 GGATCCTCTGCAATTATCTTCGG 59.000 47.826 3.84 0.00 0.00 4.30
719 729 3.999663 GGGATCCTCTGCAATTATCTTCG 59.000 47.826 12.58 0.00 0.00 3.79
720 730 4.978099 TGGGATCCTCTGCAATTATCTTC 58.022 43.478 12.58 0.00 0.00 2.87
721 731 4.662179 TCTGGGATCCTCTGCAATTATCTT 59.338 41.667 12.58 0.00 0.00 2.40
767 777 5.784177 CATTGGAGTAGACAGTTGTACACT 58.216 41.667 0.00 0.00 35.35 3.55
780 791 1.156645 GCTGCTCGGCATTGGAGTAG 61.157 60.000 3.03 3.03 44.16 2.57
788 1062 1.103398 GTTATTGGGCTGCTCGGCAT 61.103 55.000 0.00 0.00 38.13 4.40
810 1084 0.321671 ATACGCTGGATCCCGATTGG 59.678 55.000 16.14 0.00 0.00 3.16
811 1085 1.270305 ACATACGCTGGATCCCGATTG 60.270 52.381 16.14 13.80 0.00 2.67
812 1086 1.048601 ACATACGCTGGATCCCGATT 58.951 50.000 16.14 0.38 0.00 3.34
813 1087 1.000955 GAACATACGCTGGATCCCGAT 59.999 52.381 16.14 1.98 0.00 4.18
814 1088 0.387929 GAACATACGCTGGATCCCGA 59.612 55.000 16.14 2.11 0.00 5.14
815 1089 0.939577 CGAACATACGCTGGATCCCG 60.940 60.000 9.90 9.19 0.00 5.14
816 1090 0.600255 CCGAACATACGCTGGATCCC 60.600 60.000 9.90 0.00 0.00 3.85
817 1091 1.222115 GCCGAACATACGCTGGATCC 61.222 60.000 4.20 4.20 0.00 3.36
818 1092 1.222115 GGCCGAACATACGCTGGATC 61.222 60.000 0.00 0.00 0.00 3.36
819 1093 1.227556 GGCCGAACATACGCTGGAT 60.228 57.895 0.00 0.00 0.00 3.41
820 1094 2.185867 GGCCGAACATACGCTGGA 59.814 61.111 0.00 0.00 0.00 3.86
833 1374 4.636435 AAGGTGGTGTTCGGGCCG 62.636 66.667 22.51 22.51 0.00 6.13
848 1389 6.142817 CCCGAGTCACTCATAAAAACAAAAG 58.857 40.000 5.45 0.00 0.00 2.27
849 1390 5.506649 GCCCGAGTCACTCATAAAAACAAAA 60.507 40.000 5.45 0.00 0.00 2.44
850 1391 4.023536 GCCCGAGTCACTCATAAAAACAAA 60.024 41.667 5.45 0.00 0.00 2.83
851 1392 3.500680 GCCCGAGTCACTCATAAAAACAA 59.499 43.478 5.45 0.00 0.00 2.83
852 1393 3.071479 GCCCGAGTCACTCATAAAAACA 58.929 45.455 5.45 0.00 0.00 2.83
853 1394 2.418976 GGCCCGAGTCACTCATAAAAAC 59.581 50.000 5.45 0.00 0.00 2.43
855 1396 1.906574 AGGCCCGAGTCACTCATAAAA 59.093 47.619 5.45 0.00 0.00 1.52
856 1397 1.568504 AGGCCCGAGTCACTCATAAA 58.431 50.000 5.45 0.00 0.00 1.40
857 1398 1.568504 AAGGCCCGAGTCACTCATAA 58.431 50.000 5.45 0.00 0.00 1.90
858 1399 2.447408 TAAGGCCCGAGTCACTCATA 57.553 50.000 5.45 0.00 0.00 2.15
859 1400 1.794714 ATAAGGCCCGAGTCACTCAT 58.205 50.000 5.45 0.00 0.00 2.90
860 1401 2.447408 TATAAGGCCCGAGTCACTCA 57.553 50.000 5.45 0.00 0.00 3.41
861 1402 5.464030 TTTATATAAGGCCCGAGTCACTC 57.536 43.478 0.00 0.00 0.00 3.51
863 1404 3.995048 GCTTTATATAAGGCCCGAGTCAC 59.005 47.826 16.62 0.00 32.80 3.67
864 1405 4.267349 GCTTTATATAAGGCCCGAGTCA 57.733 45.455 16.62 0.00 32.80 3.41
922 1610 2.541466 AGGGAAGAGAGGATCGTTTGT 58.459 47.619 0.00 0.00 42.67 2.83
925 1613 2.763448 CTGAAGGGAAGAGAGGATCGTT 59.237 50.000 0.00 0.00 42.67 3.85
926 1614 2.024846 TCTGAAGGGAAGAGAGGATCGT 60.025 50.000 0.00 0.00 42.67 3.73
1044 1741 0.744414 CAAGGTAGGGCATGGTCACG 60.744 60.000 0.00 0.00 0.00 4.35
1118 1818 4.637489 CGGCGGCGAGATGAGAGG 62.637 72.222 29.19 0.00 0.00 3.69
1255 1955 3.352338 GATCGGTGGCGTCGTCCTT 62.352 63.158 0.00 0.00 0.00 3.36
1446 2146 0.033920 CCGAATCCATGGATCTCGCA 59.966 55.000 32.09 10.57 35.71 5.10
1447 2147 0.671781 CCCGAATCCATGGATCTCGC 60.672 60.000 32.09 21.15 35.71 5.03
1518 2218 0.680921 TGCAGGATAGCCAAACCAGC 60.681 55.000 0.00 0.00 36.87 4.85
1547 2247 0.674895 GCAGATTGCCCTCGTTGTCT 60.675 55.000 0.00 0.00 37.42 3.41
1599 2299 2.434359 GTCCTCGACGGGCTTTGG 60.434 66.667 0.00 0.00 33.40 3.28
1658 2358 1.954146 GCACGTCTTGGCGAAGTCA 60.954 57.895 8.41 0.00 45.30 3.41
1746 2446 3.936203 GGTGGTGTCGTGGCCTGA 61.936 66.667 3.32 0.00 0.00 3.86
1885 2585 3.284336 CGATGACCTCGTGACCCA 58.716 61.111 0.00 0.00 42.56 4.51
1902 2602 1.200839 CGACGAACTTGTTGACGGC 59.799 57.895 0.00 0.00 0.00 5.68
1905 2605 1.521423 CCACTCGACGAACTTGTTGAC 59.479 52.381 0.00 0.00 0.00 3.18
1908 2608 0.179094 TGCCACTCGACGAACTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
1911 2611 0.597637 CAGTGCCACTCGACGAACTT 60.598 55.000 0.00 0.00 0.00 2.66
1975 2675 1.450848 CCGACCAGCATGAGCATGT 60.451 57.895 11.68 0.00 45.49 3.21
1977 2677 1.450848 CACCGACCAGCATGAGCAT 60.451 57.895 0.00 0.00 45.49 3.79
1984 2684 0.037326 GATCAAGTCACCGACCAGCA 60.037 55.000 0.00 0.00 32.18 4.41
2024 2729 3.634448 CACTCCCAGATCGATCTAACAGT 59.366 47.826 26.87 22.40 34.85 3.55
2025 2730 3.005261 CCACTCCCAGATCGATCTAACAG 59.995 52.174 26.87 21.83 34.85 3.16
2026 2731 2.959030 CCACTCCCAGATCGATCTAACA 59.041 50.000 26.87 12.46 34.85 2.41
2027 2732 2.959707 ACCACTCCCAGATCGATCTAAC 59.040 50.000 26.87 0.09 34.85 2.34
2028 2733 3.314307 ACCACTCCCAGATCGATCTAA 57.686 47.619 26.87 14.46 34.85 2.10
2058 2763 8.203485 AGCCAAATTAAGAATCAACAGACAAAA 58.797 29.630 0.00 0.00 0.00 2.44
2190 2895 2.614987 GCATGTCTTGGAGAAGTCTGCT 60.615 50.000 1.37 0.00 35.18 4.24
2249 2954 1.226323 CAGCAATGCTCGCAGAAGC 60.226 57.895 4.03 1.65 36.40 3.86
2431 3136 1.091771 TAGACGTCGACGGGGATGAC 61.092 60.000 37.89 19.98 44.95 3.06
2553 3259 9.524496 TCTACACCTACTGTCAGATTAAAAGTA 57.476 33.333 6.91 0.49 33.91 2.24
2557 3263 8.304596 CAAGTCTACACCTACTGTCAGATTAAA 58.695 37.037 6.91 0.00 33.91 1.52
2573 3279 7.432350 ACTACAGTACAGTACAAGTCTACAC 57.568 40.000 13.37 0.00 0.00 2.90
2582 3288 4.276678 AGAACGCAACTACAGTACAGTACA 59.723 41.667 13.37 0.00 0.00 2.90
2583 3289 4.791974 AGAACGCAACTACAGTACAGTAC 58.208 43.478 2.05 2.05 0.00 2.73
2584 3290 5.443185 AAGAACGCAACTACAGTACAGTA 57.557 39.130 0.00 0.00 0.00 2.74
2585 3291 4.317671 AAGAACGCAACTACAGTACAGT 57.682 40.909 0.00 0.00 0.00 3.55
2586 3292 4.608445 GCAAAGAACGCAACTACAGTACAG 60.608 45.833 0.00 0.00 0.00 2.74
2599 3305 0.881118 TCCCAATCAGCAAAGAACGC 59.119 50.000 0.00 0.00 0.00 4.84
2800 3509 3.016971 CCTCACCCCCATCCAGCA 61.017 66.667 0.00 0.00 0.00 4.41
2802 3511 2.286425 ACCCTCACCCCCATCCAG 60.286 66.667 0.00 0.00 0.00 3.86
2932 3655 2.415090 CCGACGACACTTCCGAATAAGT 60.415 50.000 0.00 0.00 40.33 2.24
2933 3656 2.182825 CCGACGACACTTCCGAATAAG 58.817 52.381 0.00 0.00 0.00 1.73
2934 3657 1.541147 ACCGACGACACTTCCGAATAA 59.459 47.619 0.00 0.00 0.00 1.40
2935 3658 1.167851 ACCGACGACACTTCCGAATA 58.832 50.000 0.00 0.00 0.00 1.75
2936 3659 0.316204 AACCGACGACACTTCCGAAT 59.684 50.000 0.00 0.00 0.00 3.34
2941 3664 2.257034 GTATCCAACCGACGACACTTC 58.743 52.381 0.00 0.00 0.00 3.01
3132 5189 7.672983 AACTTCAGATCAAAAGCTCGAATAA 57.327 32.000 0.00 0.00 0.00 1.40
3197 5257 0.588252 CTGAAGCACCTCAACAACCG 59.412 55.000 0.00 0.00 0.00 4.44
3225 5285 2.530460 ATCAGCATTACAAGCCCCAA 57.470 45.000 0.00 0.00 0.00 4.12
3235 5295 5.402997 TGCATGAACCAAAATCAGCATTA 57.597 34.783 0.00 0.00 31.04 1.90
3325 5385 6.921857 TGTGAACAGAAAGTAAGTACTACTGC 59.078 38.462 17.70 9.08 40.14 4.40
3443 5505 5.396213 CCCAGATGGTCCTTTTCAACAAAAA 60.396 40.000 0.00 0.00 35.56 1.94
3444 5506 4.100808 CCCAGATGGTCCTTTTCAACAAAA 59.899 41.667 0.00 0.00 0.00 2.44
3445 5507 3.640967 CCCAGATGGTCCTTTTCAACAAA 59.359 43.478 0.00 0.00 0.00 2.83
3446 5508 3.230134 CCCAGATGGTCCTTTTCAACAA 58.770 45.455 0.00 0.00 0.00 2.83
3447 5509 2.875296 CCCAGATGGTCCTTTTCAACA 58.125 47.619 0.00 0.00 0.00 3.33
3448 5510 1.546029 GCCCAGATGGTCCTTTTCAAC 59.454 52.381 0.00 0.00 36.04 3.18
3449 5511 1.886222 CGCCCAGATGGTCCTTTTCAA 60.886 52.381 0.00 0.00 36.04 2.69
3450 5512 0.322456 CGCCCAGATGGTCCTTTTCA 60.322 55.000 0.00 0.00 36.04 2.69
3451 5513 0.035439 TCGCCCAGATGGTCCTTTTC 60.035 55.000 0.00 0.00 36.04 2.29
3452 5514 0.404040 TTCGCCCAGATGGTCCTTTT 59.596 50.000 0.00 0.00 36.04 2.27
3453 5515 0.625849 ATTCGCCCAGATGGTCCTTT 59.374 50.000 0.00 0.00 36.04 3.11
3454 5516 0.107017 CATTCGCCCAGATGGTCCTT 60.107 55.000 0.00 0.00 36.04 3.36
3455 5517 0.982852 TCATTCGCCCAGATGGTCCT 60.983 55.000 0.00 0.00 36.04 3.85
3456 5518 0.107214 TTCATTCGCCCAGATGGTCC 60.107 55.000 0.00 0.00 36.04 4.46
3457 5519 1.972872 ATTCATTCGCCCAGATGGTC 58.027 50.000 0.00 0.00 36.04 4.02
3458 5520 2.026641 CAATTCATTCGCCCAGATGGT 58.973 47.619 0.00 0.00 36.04 3.55
3459 5521 2.033801 GTCAATTCATTCGCCCAGATGG 59.966 50.000 0.00 0.00 37.09 3.51
3460 5522 2.684374 TGTCAATTCATTCGCCCAGATG 59.316 45.455 0.00 0.00 0.00 2.90
3461 5523 3.003394 TGTCAATTCATTCGCCCAGAT 57.997 42.857 0.00 0.00 0.00 2.90
3462 5524 2.488204 TGTCAATTCATTCGCCCAGA 57.512 45.000 0.00 0.00 0.00 3.86
3463 5525 3.574284 TTTGTCAATTCATTCGCCCAG 57.426 42.857 0.00 0.00 0.00 4.45
3464 5526 4.327982 TTTTTGTCAATTCATTCGCCCA 57.672 36.364 0.00 0.00 0.00 5.36
3482 5544 2.871096 TATCGGCAGGTGGTCTTTTT 57.129 45.000 0.00 0.00 0.00 1.94
3483 5545 2.871096 TTATCGGCAGGTGGTCTTTT 57.129 45.000 0.00 0.00 0.00 2.27
3484 5546 2.871096 TTTATCGGCAGGTGGTCTTT 57.129 45.000 0.00 0.00 0.00 2.52
3485 5547 3.366052 AATTTATCGGCAGGTGGTCTT 57.634 42.857 0.00 0.00 0.00 3.01
3486 5548 3.366052 AAATTTATCGGCAGGTGGTCT 57.634 42.857 0.00 0.00 0.00 3.85
3487 5549 4.396790 TGTTAAATTTATCGGCAGGTGGTC 59.603 41.667 0.00 0.00 0.00 4.02
3488 5550 4.337145 TGTTAAATTTATCGGCAGGTGGT 58.663 39.130 0.00 0.00 0.00 4.16
3489 5551 4.974368 TGTTAAATTTATCGGCAGGTGG 57.026 40.909 0.00 0.00 0.00 4.61
3490 5552 7.148656 CCTTTTTGTTAAATTTATCGGCAGGTG 60.149 37.037 0.00 0.00 0.00 4.00
3491 5553 6.871492 CCTTTTTGTTAAATTTATCGGCAGGT 59.129 34.615 0.00 0.00 0.00 4.00
3492 5554 7.062956 GTCCTTTTTGTTAAATTTATCGGCAGG 59.937 37.037 0.00 3.75 0.00 4.85
3493 5555 7.062956 GGTCCTTTTTGTTAAATTTATCGGCAG 59.937 37.037 0.00 0.00 0.00 4.85
3494 5556 6.869388 GGTCCTTTTTGTTAAATTTATCGGCA 59.131 34.615 0.00 0.00 0.00 5.69
3495 5557 6.311935 GGGTCCTTTTTGTTAAATTTATCGGC 59.688 38.462 0.00 0.00 0.00 5.54
3496 5558 6.814644 GGGGTCCTTTTTGTTAAATTTATCGG 59.185 38.462 0.00 0.00 0.00 4.18
3497 5559 6.814644 GGGGGTCCTTTTTGTTAAATTTATCG 59.185 38.462 0.00 0.00 0.00 2.92
3498 5560 7.913789 AGGGGGTCCTTTTTGTTAAATTTATC 58.086 34.615 0.00 0.00 41.56 1.75
3499 5561 7.310175 CGAGGGGGTCCTTTTTGTTAAATTTAT 60.310 37.037 0.00 0.00 45.05 1.40
3500 5562 6.015265 CGAGGGGGTCCTTTTTGTTAAATTTA 60.015 38.462 0.00 0.00 45.05 1.40
3501 5563 5.221561 CGAGGGGGTCCTTTTTGTTAAATTT 60.222 40.000 0.00 0.00 45.05 1.82
3502 5564 4.282449 CGAGGGGGTCCTTTTTGTTAAATT 59.718 41.667 0.00 0.00 45.05 1.82
3503 5565 3.830178 CGAGGGGGTCCTTTTTGTTAAAT 59.170 43.478 0.00 0.00 45.05 1.40
3504 5566 3.224269 CGAGGGGGTCCTTTTTGTTAAA 58.776 45.455 0.00 0.00 45.05 1.52
3505 5567 2.489437 CCGAGGGGGTCCTTTTTGTTAA 60.489 50.000 0.00 0.00 45.05 2.01
3506 5568 1.074244 CCGAGGGGGTCCTTTTTGTTA 59.926 52.381 0.00 0.00 45.05 2.41
3507 5569 0.178973 CCGAGGGGGTCCTTTTTGTT 60.179 55.000 0.00 0.00 45.05 2.83
3508 5570 1.458927 CCGAGGGGGTCCTTTTTGT 59.541 57.895 0.00 0.00 45.05 2.83
3509 5571 1.977009 GCCGAGGGGGTCCTTTTTG 60.977 63.158 0.00 0.00 45.05 2.44
3510 5572 2.160853 AGCCGAGGGGGTCCTTTTT 61.161 57.895 0.00 0.00 45.05 1.94
3511 5573 2.531942 AGCCGAGGGGGTCCTTTT 60.532 61.111 0.00 0.00 45.05 2.27
3512 5574 3.330720 CAGCCGAGGGGGTCCTTT 61.331 66.667 0.00 0.00 45.05 3.11
3513 5575 4.658786 ACAGCCGAGGGGGTCCTT 62.659 66.667 0.00 0.00 45.05 3.36
3569 5631 4.034258 CTGCCGCCTTGCTGTGTG 62.034 66.667 0.00 0.00 0.00 3.82
3576 5638 2.358615 TACAGTGCTGCCGCCTTG 60.359 61.111 0.00 0.00 34.43 3.61
3577 5639 2.358737 GTACAGTGCTGCCGCCTT 60.359 61.111 0.00 0.00 34.43 4.35
3578 5640 4.394712 GGTACAGTGCTGCCGCCT 62.395 66.667 0.00 0.00 34.43 5.52
3579 5641 4.697756 TGGTACAGTGCTGCCGCC 62.698 66.667 0.00 0.49 34.43 6.13
3580 5642 2.668212 TTGGTACAGTGCTGCCGC 60.668 61.111 0.00 0.00 42.39 6.53
3581 5643 2.667318 CGTTGGTACAGTGCTGCCG 61.667 63.158 0.00 0.00 42.39 5.69
3582 5644 2.325082 CCGTTGGTACAGTGCTGCC 61.325 63.158 0.00 0.00 42.39 4.85
3583 5645 2.325082 CCCGTTGGTACAGTGCTGC 61.325 63.158 0.00 0.00 42.39 5.25
3584 5646 0.250124 TTCCCGTTGGTACAGTGCTG 60.250 55.000 0.00 0.00 42.39 4.41
3585 5647 0.690762 ATTCCCGTTGGTACAGTGCT 59.309 50.000 0.00 0.00 42.39 4.40
3586 5648 1.084289 GATTCCCGTTGGTACAGTGC 58.916 55.000 0.00 0.00 42.39 4.40
3587 5649 1.355971 CGATTCCCGTTGGTACAGTG 58.644 55.000 0.00 0.00 42.39 3.66
3588 5650 0.248289 CCGATTCCCGTTGGTACAGT 59.752 55.000 0.00 0.00 35.62 3.55
3589 5651 1.087771 GCCGATTCCCGTTGGTACAG 61.088 60.000 0.00 0.00 35.62 2.74
3590 5652 1.078988 GCCGATTCCCGTTGGTACA 60.079 57.895 0.00 0.00 36.31 2.90
3591 5653 2.169146 CGCCGATTCCCGTTGGTAC 61.169 63.158 0.00 0.00 36.31 3.34
3592 5654 2.184836 CGCCGATTCCCGTTGGTA 59.815 61.111 0.00 0.00 36.31 3.25
3595 5657 3.864686 CAGCGCCGATTCCCGTTG 61.865 66.667 2.29 0.00 36.31 4.10
3648 5710 4.641645 TGCTGCCACGTCCCTTGG 62.642 66.667 0.00 0.00 37.17 3.61
3649 5711 2.449031 TACTGCTGCCACGTCCCTTG 62.449 60.000 0.00 0.00 0.00 3.61
3650 5712 2.214216 TACTGCTGCCACGTCCCTT 61.214 57.895 0.00 0.00 0.00 3.95
3651 5713 2.603473 TACTGCTGCCACGTCCCT 60.603 61.111 0.00 0.00 0.00 4.20
3652 5714 2.434359 GTACTGCTGCCACGTCCC 60.434 66.667 0.00 0.00 0.00 4.46
3653 5715 1.738099 CAGTACTGCTGCCACGTCC 60.738 63.158 10.54 0.00 38.52 4.79
3654 5716 3.862124 CAGTACTGCTGCCACGTC 58.138 61.111 10.54 0.00 38.52 4.34
3662 5724 1.265454 GCCCCAGGTACAGTACTGCT 61.265 60.000 22.90 9.16 33.43 4.24
3663 5725 1.221021 GCCCCAGGTACAGTACTGC 59.779 63.158 22.90 7.36 33.43 4.40
3664 5726 1.515954 CGCCCCAGGTACAGTACTG 59.484 63.158 21.44 21.44 34.54 2.74
3665 5727 2.356780 GCGCCCCAGGTACAGTACT 61.357 63.158 10.62 0.00 0.00 2.73
3666 5728 2.186125 GCGCCCCAGGTACAGTAC 59.814 66.667 0.00 1.59 0.00 2.73
3667 5729 3.454573 CGCGCCCCAGGTACAGTA 61.455 66.667 0.00 0.00 0.00 2.74
3701 5763 3.818787 CATGAACAGGGCTGCCGC 61.819 66.667 13.40 5.80 0.00 6.53
3702 5764 3.136123 CCATGAACAGGGCTGCCG 61.136 66.667 13.40 1.87 0.00 5.69
3708 5770 3.818787 GCAGCGCCATGAACAGGG 61.819 66.667 2.29 0.88 34.91 4.45
3709 5771 2.749044 AGCAGCGCCATGAACAGG 60.749 61.111 2.29 0.00 0.00 4.00
3710 5772 2.483745 CAGCAGCGCCATGAACAG 59.516 61.111 2.29 0.00 0.00 3.16
3711 5773 3.740397 GCAGCAGCGCCATGAACA 61.740 61.111 2.29 0.00 0.00 3.18
3720 5782 2.451167 GTGCAGTAGAGCAGCAGCG 61.451 63.158 0.00 0.00 46.69 5.18
3721 5783 2.451167 CGTGCAGTAGAGCAGCAGC 61.451 63.158 0.00 0.00 46.69 5.25
3722 5784 2.451167 GCGTGCAGTAGAGCAGCAG 61.451 63.158 0.00 0.00 46.69 4.24
3723 5785 1.595093 TAGCGTGCAGTAGAGCAGCA 61.595 55.000 0.00 0.00 46.69 4.41
3724 5786 1.139734 TAGCGTGCAGTAGAGCAGC 59.860 57.895 0.00 0.00 46.69 5.25
3725 5787 0.863538 CGTAGCGTGCAGTAGAGCAG 60.864 60.000 0.00 0.00 46.69 4.24
3726 5788 1.136774 CGTAGCGTGCAGTAGAGCA 59.863 57.895 0.00 0.00 43.35 4.26
3727 5789 3.984241 CGTAGCGTGCAGTAGAGC 58.016 61.111 0.00 0.00 0.00 4.09
3744 5806 0.377554 CAGCAGCAGTAGCAATCAGC 59.622 55.000 0.00 0.00 45.49 4.26
3745 5807 0.377554 GCAGCAGCAGTAGCAATCAG 59.622 55.000 0.00 0.00 45.49 2.90
3746 5808 2.474561 GCAGCAGCAGTAGCAATCA 58.525 52.632 0.00 0.00 45.49 2.57
3757 5819 1.138047 CTAAAAGCGCATGCAGCAGC 61.138 55.000 27.63 18.98 46.13 5.25
3758 5820 1.138047 GCTAAAAGCGCATGCAGCAG 61.138 55.000 27.63 19.57 46.13 4.24
3759 5821 1.153978 GCTAAAAGCGCATGCAGCA 60.154 52.632 27.63 0.00 46.13 4.41
3760 5822 1.875364 GGCTAAAAGCGCATGCAGC 60.875 57.895 19.57 20.78 43.62 5.25
3761 5823 1.584483 CGGCTAAAAGCGCATGCAG 60.584 57.895 19.57 11.69 43.62 4.41
3762 5824 2.484662 CGGCTAAAAGCGCATGCA 59.515 55.556 19.57 0.00 43.62 3.96
3763 5825 2.278142 CCGGCTAAAAGCGCATGC 60.278 61.111 11.47 7.91 43.62 4.06
3764 5826 2.278142 GCCGGCTAAAAGCGCATG 60.278 61.111 22.15 0.00 43.62 4.06
3765 5827 3.518068 GGCCGGCTAAAAGCGCAT 61.518 61.111 28.56 0.00 43.62 4.73
3767 5829 4.476410 GTGGCCGGCTAAAAGCGC 62.476 66.667 28.56 11.41 43.62 5.92
3768 5830 2.746277 AGTGGCCGGCTAAAAGCG 60.746 61.111 28.56 0.00 43.62 4.68
3769 5831 2.877691 CAGTGGCCGGCTAAAAGC 59.122 61.111 28.56 8.40 41.46 3.51
3770 5832 1.675641 AGCAGTGGCCGGCTAAAAG 60.676 57.895 28.56 14.55 40.52 2.27
3771 5833 1.971167 CAGCAGTGGCCGGCTAAAA 60.971 57.895 28.56 7.01 40.32 1.52
3772 5834 2.359850 CAGCAGTGGCCGGCTAAA 60.360 61.111 28.56 9.90 40.32 1.85
3777 5839 4.790962 ATCAGCAGCAGTGGCCGG 62.791 66.667 0.00 0.00 42.56 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.