Multiple sequence alignment - TraesCS1B01G134200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G134200 chr1B 100.000 3973 0 0 1 3973 170517206 170513234 0.000000e+00 7337
1 TraesCS1B01G134200 chr1A 84.775 1399 94 58 417 1760 117891151 117889817 0.000000e+00 1293
2 TraesCS1B01G134200 chr1A 92.512 868 37 14 2263 3118 117889550 117888699 0.000000e+00 1218
3 TraesCS1B01G134200 chr1A 86.982 338 32 4 5 336 117891588 117891257 1.740000e-98 370
4 TraesCS1B01G134200 chr1A 95.628 183 7 1 1979 2160 117889728 117889546 3.880000e-75 292
5 TraesCS1B01G134200 chr1A 86.391 169 13 5 2960 3119 117888199 117888032 4.080000e-40 176
6 TraesCS1B01G134200 chr1D 94.718 833 34 8 2263 3091 111514483 111513657 0.000000e+00 1286
7 TraesCS1B01G134200 chr1D 88.000 1000 61 27 417 1374 111516091 111515109 0.000000e+00 1127
8 TraesCS1B01G134200 chr1D 88.874 746 72 8 3231 3973 110922750 110922013 0.000000e+00 907
9 TraesCS1B01G134200 chr1D 89.174 351 30 5 1413 1760 111515101 111514756 7.890000e-117 431
10 TraesCS1B01G134200 chr1D 96.610 177 6 0 1984 2160 111514655 111514479 1.080000e-75 294
11 TraesCS1B01G134200 chr5D 90.353 736 61 9 3239 3973 412714190 412713464 0.000000e+00 957
12 TraesCS1B01G134200 chr4D 89.973 738 63 8 3239 3973 318592554 318591825 0.000000e+00 942
13 TraesCS1B01G134200 chr4D 89.768 733 64 9 3239 3970 401092840 401093562 0.000000e+00 928
14 TraesCS1B01G134200 chr4D 89.218 742 68 9 3228 3968 4375512 4376242 0.000000e+00 917
15 TraesCS1B01G134200 chr3D 89.373 734 69 8 3239 3970 607326566 607327292 0.000000e+00 915
16 TraesCS1B01G134200 chr3D 92.045 176 12 2 1989 2163 46965658 46965484 3.070000e-61 246
17 TraesCS1B01G134200 chr2D 89.281 737 69 9 3239 3973 539571920 539571192 0.000000e+00 915
18 TraesCS1B01G134200 chr6D 89.130 736 74 5 3239 3973 304437179 304436449 0.000000e+00 911
19 TraesCS1B01G134200 chr7D 88.667 750 78 5 3225 3973 438546413 438545670 0.000000e+00 907
20 TraesCS1B01G134200 chr7D 82.292 384 49 11 2579 2960 197150526 197150892 8.290000e-82 315
21 TraesCS1B01G134200 chr7D 91.463 82 7 0 2081 2162 197149962 197150043 3.240000e-21 113
22 TraesCS1B01G134200 chr7B 81.039 385 52 13 2579 2960 161447860 161448226 1.810000e-73 287
23 TraesCS1B01G134200 chr7B 92.683 82 6 0 2081 2162 161447309 161447390 6.970000e-23 119
24 TraesCS1B01G134200 chr3A 92.045 176 12 2 1989 2163 58685532 58685358 3.070000e-61 246
25 TraesCS1B01G134200 chr3B 91.379 174 13 2 1989 2161 73305581 73305409 1.850000e-58 237
26 TraesCS1B01G134200 chr3B 92.683 82 6 0 2081 2162 272586346 272586265 6.970000e-23 119
27 TraesCS1B01G134200 chr7A 92.683 82 6 0 2081 2162 206581670 206581751 6.970000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G134200 chr1B 170513234 170517206 3972 True 7337.0 7337 100.0000 1 3973 1 chr1B.!!$R1 3972
1 TraesCS1B01G134200 chr1A 117888032 117891588 3556 True 669.8 1293 89.2576 5 3119 5 chr1A.!!$R1 3114
2 TraesCS1B01G134200 chr1D 110922013 110922750 737 True 907.0 907 88.8740 3231 3973 1 chr1D.!!$R1 742
3 TraesCS1B01G134200 chr1D 111513657 111516091 2434 True 784.5 1286 92.1255 417 3091 4 chr1D.!!$R2 2674
4 TraesCS1B01G134200 chr5D 412713464 412714190 726 True 957.0 957 90.3530 3239 3973 1 chr5D.!!$R1 734
5 TraesCS1B01G134200 chr4D 318591825 318592554 729 True 942.0 942 89.9730 3239 3973 1 chr4D.!!$R1 734
6 TraesCS1B01G134200 chr4D 401092840 401093562 722 False 928.0 928 89.7680 3239 3970 1 chr4D.!!$F2 731
7 TraesCS1B01G134200 chr4D 4375512 4376242 730 False 917.0 917 89.2180 3228 3968 1 chr4D.!!$F1 740
8 TraesCS1B01G134200 chr3D 607326566 607327292 726 False 915.0 915 89.3730 3239 3970 1 chr3D.!!$F1 731
9 TraesCS1B01G134200 chr2D 539571192 539571920 728 True 915.0 915 89.2810 3239 3973 1 chr2D.!!$R1 734
10 TraesCS1B01G134200 chr6D 304436449 304437179 730 True 911.0 911 89.1300 3239 3973 1 chr6D.!!$R1 734
11 TraesCS1B01G134200 chr7D 438545670 438546413 743 True 907.0 907 88.6670 3225 3973 1 chr7D.!!$R1 748
12 TraesCS1B01G134200 chr7D 197149962 197150892 930 False 214.0 315 86.8775 2081 2960 2 chr7D.!!$F1 879
13 TraesCS1B01G134200 chr7B 161447309 161448226 917 False 203.0 287 86.8610 2081 2960 2 chr7B.!!$F1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 498 0.038310 AAACCTGCTCTGCCTAACCC 59.962 55.0 0.00 0.0 0.00 4.11 F
1774 1934 0.037326 TGATTGGCACTCCGTGTCTC 60.037 55.0 2.13 0.0 39.12 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2156 2318 0.036010 GCAGAGCATGTGTGGTACCT 60.036 55.0 14.36 0.0 35.91 3.08 R
3184 3555 0.039618 GCCCACTTGAAATCAGGGGA 59.960 55.0 16.49 0.0 39.96 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.446065 GCGTTTTTCGTATTATTGCGC 57.554 42.857 0.00 0.00 42.13 6.09
34 35 0.315544 TTGCGCGTCGAAAACTCAAC 60.316 50.000 8.43 0.00 0.00 3.18
47 48 6.595326 TCGAAAACTCAACTATGCAGATTCAT 59.405 34.615 0.00 0.00 0.00 2.57
74 75 1.881973 TCACAATCCTCTGCTTTGCAC 59.118 47.619 0.00 0.00 33.79 4.57
97 98 8.342634 GCACGTGTCATCCTATATTATTTTTGT 58.657 33.333 18.38 0.00 0.00 2.83
129 130 8.251383 AGATCCTTCTCCTACGAATCAAATAA 57.749 34.615 0.00 0.00 0.00 1.40
178 180 2.906389 TGGGTGAGAAAGTGTCTGCTAT 59.094 45.455 0.00 0.00 36.41 2.97
180 182 3.055819 GGGTGAGAAAGTGTCTGCTATCA 60.056 47.826 0.00 0.00 36.41 2.15
182 184 4.560128 GTGAGAAAGTGTCTGCTATCACA 58.440 43.478 0.00 0.00 36.41 3.58
216 218 8.843733 CAAATGAATTGTACAAAGACGATTGAG 58.156 33.333 13.23 1.45 34.22 3.02
227 229 6.207417 ACAAAGACGATTGAGTGGATGAAAAT 59.793 34.615 0.00 0.00 34.38 1.82
255 261 5.809001 TCCAGAAATAGAGTGCAAGTGAAT 58.191 37.500 0.00 0.00 0.00 2.57
256 262 5.645067 TCCAGAAATAGAGTGCAAGTGAATG 59.355 40.000 0.00 0.00 0.00 2.67
260 266 8.549548 CAGAAATAGAGTGCAAGTGAATGATAG 58.450 37.037 0.00 0.00 0.00 2.08
315 322 8.690884 TGAATCAAATGACTAACACAGGAAAAA 58.309 29.630 0.00 0.00 0.00 1.94
375 382 9.387257 GAAATTATTTTCAATCAAAGGAGCCAT 57.613 29.630 5.43 0.00 40.82 4.40
376 383 8.953368 AATTATTTTCAATCAAAGGAGCCATC 57.047 30.769 0.00 0.00 0.00 3.51
377 384 7.479352 TTATTTTCAATCAAAGGAGCCATCA 57.521 32.000 0.00 0.00 0.00 3.07
378 385 5.395682 TTTTCAATCAAAGGAGCCATCAG 57.604 39.130 0.00 0.00 0.00 2.90
379 386 4.305539 TTCAATCAAAGGAGCCATCAGA 57.694 40.909 0.00 0.00 0.00 3.27
380 387 4.305539 TCAATCAAAGGAGCCATCAGAA 57.694 40.909 0.00 0.00 0.00 3.02
381 388 4.267536 TCAATCAAAGGAGCCATCAGAAG 58.732 43.478 0.00 0.00 0.00 2.85
382 389 4.015084 CAATCAAAGGAGCCATCAGAAGT 58.985 43.478 0.00 0.00 0.00 3.01
383 390 5.045651 TCAATCAAAGGAGCCATCAGAAGTA 60.046 40.000 0.00 0.00 0.00 2.24
384 391 4.908601 TCAAAGGAGCCATCAGAAGTAA 57.091 40.909 0.00 0.00 0.00 2.24
385 392 5.441718 TCAAAGGAGCCATCAGAAGTAAT 57.558 39.130 0.00 0.00 0.00 1.89
386 393 6.560003 TCAAAGGAGCCATCAGAAGTAATA 57.440 37.500 0.00 0.00 0.00 0.98
387 394 6.586344 TCAAAGGAGCCATCAGAAGTAATAG 58.414 40.000 0.00 0.00 0.00 1.73
388 395 4.615588 AGGAGCCATCAGAAGTAATAGC 57.384 45.455 0.00 0.00 0.00 2.97
389 396 3.006323 AGGAGCCATCAGAAGTAATAGCG 59.994 47.826 0.00 0.00 0.00 4.26
390 397 3.243907 GGAGCCATCAGAAGTAATAGCGT 60.244 47.826 0.00 0.00 0.00 5.07
391 398 3.722147 AGCCATCAGAAGTAATAGCGTG 58.278 45.455 0.00 0.00 0.00 5.34
392 399 2.221981 GCCATCAGAAGTAATAGCGTGC 59.778 50.000 0.00 0.00 0.00 5.34
393 400 2.802816 CCATCAGAAGTAATAGCGTGCC 59.197 50.000 0.00 0.00 0.00 5.01
394 401 2.596904 TCAGAAGTAATAGCGTGCCC 57.403 50.000 0.00 0.00 0.00 5.36
449 498 0.038310 AAACCTGCTCTGCCTAACCC 59.962 55.000 0.00 0.00 0.00 4.11
481 537 1.081892 GACATTGCACAGATCTGCGT 58.918 50.000 22.83 9.98 40.31 5.24
508 564 2.673523 GCACATGGAGAGCACCCT 59.326 61.111 0.00 0.00 33.66 4.34
509 565 1.748122 GCACATGGAGAGCACCCTG 60.748 63.158 0.00 0.00 33.66 4.45
577 640 1.962807 CTGGCCTCCACTGAGATCTAG 59.037 57.143 3.32 0.00 41.42 2.43
744 816 2.486966 GTGAGCCAAATCAGCCGC 59.513 61.111 0.00 0.00 0.00 6.53
745 817 2.751436 TGAGCCAAATCAGCCGCC 60.751 61.111 0.00 0.00 0.00 6.13
774 846 1.648467 GCAGAGACGGCCAAATGACC 61.648 60.000 2.24 0.00 0.00 4.02
779 851 1.926511 GACGGCCAAATGACCTGCTG 61.927 60.000 2.24 0.00 36.19 4.41
833 921 3.198853 GCCATTCTCCCAGGTATCTATCC 59.801 52.174 0.00 0.00 0.00 2.59
907 1001 3.736100 CAACCGCGCCAATGCTGA 61.736 61.111 0.00 0.00 34.43 4.26
913 1031 3.434319 CGCCAATGCTGACGCCTT 61.434 61.111 0.00 0.00 34.43 4.35
949 1067 7.495135 AAAGCTTCTTCTTCTTCTTCTTCTG 57.505 36.000 0.00 0.00 0.00 3.02
950 1068 6.418057 AGCTTCTTCTTCTTCTTCTTCTGA 57.582 37.500 0.00 0.00 0.00 3.27
969 1107 2.965831 TGATCCTAGGCTGCTACGAAAT 59.034 45.455 2.96 0.00 0.00 2.17
975 1113 0.378610 GGCTGCTACGAAATTCAGGC 59.621 55.000 0.00 1.23 43.16 4.85
976 1114 0.378610 GCTGCTACGAAATTCAGGCC 59.621 55.000 0.00 0.00 0.00 5.19
977 1115 1.737838 CTGCTACGAAATTCAGGCCA 58.262 50.000 5.01 0.00 0.00 5.36
978 1116 1.667724 CTGCTACGAAATTCAGGCCAG 59.332 52.381 5.01 0.00 0.00 4.85
979 1117 0.378610 GCTACGAAATTCAGGCCAGC 59.621 55.000 5.01 0.00 0.00 4.85
980 1118 2.014068 GCTACGAAATTCAGGCCAGCT 61.014 52.381 5.01 0.00 0.00 4.24
981 1119 1.936547 CTACGAAATTCAGGCCAGCTC 59.063 52.381 5.01 0.00 0.00 4.09
982 1120 0.326264 ACGAAATTCAGGCCAGCTCT 59.674 50.000 5.01 0.00 0.00 4.09
983 1121 0.731417 CGAAATTCAGGCCAGCTCTG 59.269 55.000 5.01 0.00 0.00 3.35
984 1122 0.455005 GAAATTCAGGCCAGCTCTGC 59.545 55.000 5.01 0.00 32.63 4.26
985 1123 0.039326 AAATTCAGGCCAGCTCTGCT 59.961 50.000 5.01 0.00 40.77 4.24
1133 1274 4.162690 GCTCCGGCGGATCAAGGT 62.163 66.667 31.23 0.00 0.00 3.50
1188 1337 1.082117 CGATCCAGGCACGTACAACC 61.082 60.000 0.00 0.00 0.00 3.77
1204 1353 0.182775 AACCCACGTTCTGCTCCTTT 59.817 50.000 0.00 0.00 0.00 3.11
1208 1357 1.676006 CCACGTTCTGCTCCTTTGTTT 59.324 47.619 0.00 0.00 0.00 2.83
1209 1358 2.287009 CCACGTTCTGCTCCTTTGTTTC 60.287 50.000 0.00 0.00 0.00 2.78
1216 1365 4.067896 TCTGCTCCTTTGTTTCTCACATC 58.932 43.478 0.00 0.00 34.43 3.06
1223 1372 4.919168 CCTTTGTTTCTCACATCGTACGTA 59.081 41.667 16.05 2.34 34.43 3.57
1225 1374 6.090358 CCTTTGTTTCTCACATCGTACGTATT 59.910 38.462 16.05 0.00 34.43 1.89
1235 1384 5.749588 CACATCGTACGTATTATTTGTCCCA 59.250 40.000 16.05 0.00 0.00 4.37
1243 1392 6.560711 ACGTATTATTTGTCCCATTTCTTGC 58.439 36.000 0.00 0.00 0.00 4.01
1248 1397 0.482446 TGTCCCATTTCTTGCCAGGT 59.518 50.000 0.00 0.00 0.00 4.00
1251 1400 1.094785 CCCATTTCTTGCCAGGTACG 58.905 55.000 0.00 0.00 0.00 3.67
1252 1401 1.613255 CCCATTTCTTGCCAGGTACGT 60.613 52.381 0.00 0.00 0.00 3.57
1254 1403 2.936498 CCATTTCTTGCCAGGTACGTAG 59.064 50.000 0.00 0.00 0.00 3.51
1256 1405 4.382254 CCATTTCTTGCCAGGTACGTAGTA 60.382 45.833 0.00 0.00 45.11 1.82
1273 1422 6.946165 ACGTAGTACTAACTGATCTTCATCG 58.054 40.000 3.61 1.90 41.94 3.84
1274 1423 6.538021 ACGTAGTACTAACTGATCTTCATCGT 59.462 38.462 3.61 2.54 41.94 3.73
1275 1424 7.065563 ACGTAGTACTAACTGATCTTCATCGTT 59.934 37.037 3.61 0.00 41.94 3.85
1276 1425 7.909121 CGTAGTACTAACTGATCTTCATCGTTT 59.091 37.037 3.61 0.00 36.36 3.60
1277 1426 9.224058 GTAGTACTAACTGATCTTCATCGTTTC 57.776 37.037 3.61 0.00 36.36 2.78
1341 1490 3.554692 CAGCCCGCGTTCGATCAC 61.555 66.667 4.92 0.00 38.10 3.06
1374 1523 1.019805 GCCAGAAACCAGAGGTACGC 61.020 60.000 0.00 0.00 33.12 4.42
1376 1525 0.038526 CAGAAACCAGAGGTACGCGT 60.039 55.000 19.17 19.17 33.12 6.01
1397 1546 4.150627 CGTAGTGTTGTTCTGATTGACTGG 59.849 45.833 0.00 0.00 0.00 4.00
1398 1547 2.880890 AGTGTTGTTCTGATTGACTGGC 59.119 45.455 0.00 0.00 0.00 4.85
1399 1548 2.618241 GTGTTGTTCTGATTGACTGGCA 59.382 45.455 0.00 0.00 0.00 4.92
1400 1549 2.880268 TGTTGTTCTGATTGACTGGCAG 59.120 45.455 14.16 14.16 0.00 4.85
1401 1550 2.880890 GTTGTTCTGATTGACTGGCAGT 59.119 45.455 22.26 22.26 0.00 4.40
1402 1551 2.497138 TGTTCTGATTGACTGGCAGTG 58.503 47.619 27.45 9.62 0.00 3.66
1407 1556 1.693606 TGATTGACTGGCAGTGACTGA 59.306 47.619 27.45 1.27 32.44 3.41
1411 1560 2.047844 CTGGCAGTGACTGACCGG 60.048 66.667 17.10 16.77 39.07 5.28
1432 1581 2.064387 GCAATGTGCATCGTGTTGC 58.936 52.632 0.00 0.00 44.26 4.17
1434 1583 0.039346 CAATGTGCATCGTGTTGCCA 60.039 50.000 0.00 0.00 42.06 4.92
1449 1598 1.374758 GCCACGTCTGTCCTTGAGG 60.375 63.158 0.00 0.00 0.00 3.86
1473 1625 4.641541 TGATCAGTAATGGAATGCTTGGTG 59.358 41.667 0.00 0.00 0.00 4.17
1474 1626 4.032960 TCAGTAATGGAATGCTTGGTGT 57.967 40.909 0.00 0.00 0.00 4.16
1475 1627 3.758023 TCAGTAATGGAATGCTTGGTGTG 59.242 43.478 0.00 0.00 0.00 3.82
1476 1628 2.493278 AGTAATGGAATGCTTGGTGTGC 59.507 45.455 0.00 0.00 0.00 4.57
1477 1629 0.244450 AATGGAATGCTTGGTGTGCG 59.756 50.000 0.00 0.00 0.00 5.34
1478 1630 1.597797 ATGGAATGCTTGGTGTGCGG 61.598 55.000 0.00 0.00 0.00 5.69
1479 1631 2.126346 GAATGCTTGGTGTGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
1480 1632 2.598394 AATGCTTGGTGTGCGGCT 60.598 55.556 0.00 0.00 0.00 5.52
1535 1690 2.357034 GCCTTGGCAGACGACGAA 60.357 61.111 0.00 0.00 0.00 3.85
1734 1893 0.839277 TCACCGGCCAGAATGATGAT 59.161 50.000 0.00 0.00 39.69 2.45
1736 1895 0.250038 ACCGGCCAGAATGATGATCG 60.250 55.000 0.00 0.00 39.69 3.69
1744 1903 1.271934 AGAATGATGATCGCTCCCTCG 59.728 52.381 0.00 0.00 0.00 4.63
1751 1911 2.045280 ATCGCTCCCTCGATTCAGG 58.955 57.895 0.00 0.00 45.81 3.86
1754 1914 1.456196 CGCTCCCTCGATTCAGGCTA 61.456 60.000 0.00 0.00 31.23 3.93
1757 1917 2.242926 CTCCCTCGATTCAGGCTATGA 58.757 52.381 0.00 0.00 35.62 2.15
1760 1920 3.007290 TCCCTCGATTCAGGCTATGATTG 59.993 47.826 0.00 0.00 37.89 2.67
1762 1922 2.740981 CTCGATTCAGGCTATGATTGGC 59.259 50.000 0.00 0.00 37.89 4.52
1765 1925 3.484407 GATTCAGGCTATGATTGGCACT 58.516 45.455 3.13 0.00 37.89 4.40
1767 1927 1.141657 TCAGGCTATGATTGGCACTCC 59.858 52.381 2.13 0.00 31.12 3.85
1769 1929 0.179045 GGCTATGATTGGCACTCCGT 60.179 55.000 2.13 0.00 34.14 4.69
1770 1930 0.940126 GCTATGATTGGCACTCCGTG 59.060 55.000 2.13 0.00 36.51 4.94
1771 1931 1.743772 GCTATGATTGGCACTCCGTGT 60.744 52.381 2.13 0.00 35.75 4.49
1772 1932 2.205074 CTATGATTGGCACTCCGTGTC 58.795 52.381 2.13 0.00 38.79 3.67
1773 1933 0.615331 ATGATTGGCACTCCGTGTCT 59.385 50.000 2.13 0.00 39.12 3.41
1774 1934 0.037326 TGATTGGCACTCCGTGTCTC 60.037 55.000 2.13 0.00 39.12 3.36
1775 1935 0.741221 GATTGGCACTCCGTGTCTCC 60.741 60.000 0.08 0.00 39.12 3.71
1776 1936 1.480212 ATTGGCACTCCGTGTCTCCA 61.480 55.000 0.08 0.00 39.12 3.86
1777 1937 1.480212 TTGGCACTCCGTGTCTCCAT 61.480 55.000 0.08 0.00 39.12 3.41
1778 1938 1.448540 GGCACTCCGTGTCTCCATG 60.449 63.158 0.00 0.00 35.05 3.66
1779 1939 1.293498 GCACTCCGTGTCTCCATGT 59.707 57.895 0.00 0.00 35.75 3.21
1780 1940 0.530744 GCACTCCGTGTCTCCATGTA 59.469 55.000 0.00 0.00 35.75 2.29
1781 1941 1.736032 GCACTCCGTGTCTCCATGTAC 60.736 57.143 0.00 0.00 35.75 2.90
1782 1942 0.809385 ACTCCGTGTCTCCATGTACG 59.191 55.000 0.00 0.00 36.39 3.67
1786 1946 1.909376 CGTGTCTCCATGTACGGAAG 58.091 55.000 0.00 0.00 33.65 3.46
1803 1963 6.009115 ACGGAAGTCCATTTCATTAACAAC 57.991 37.500 0.00 0.00 44.19 3.32
1804 1964 5.048294 ACGGAAGTCCATTTCATTAACAACC 60.048 40.000 0.00 0.00 44.19 3.77
1805 1965 5.621329 CGGAAGTCCATTTCATTAACAACCC 60.621 44.000 0.00 0.00 35.14 4.11
1806 1966 5.385509 AAGTCCATTTCATTAACAACCCG 57.614 39.130 0.00 0.00 0.00 5.28
1807 1967 4.658063 AGTCCATTTCATTAACAACCCGA 58.342 39.130 0.00 0.00 0.00 5.14
1808 1968 5.074115 AGTCCATTTCATTAACAACCCGAA 58.926 37.500 0.00 0.00 0.00 4.30
1809 1969 5.714806 AGTCCATTTCATTAACAACCCGAAT 59.285 36.000 0.00 0.00 0.00 3.34
1810 1970 5.804979 GTCCATTTCATTAACAACCCGAATG 59.195 40.000 0.00 0.00 32.85 2.67
1811 1971 5.712446 TCCATTTCATTAACAACCCGAATGA 59.288 36.000 0.00 0.00 37.71 2.57
1812 1972 6.209589 TCCATTTCATTAACAACCCGAATGAA 59.790 34.615 5.41 5.41 44.04 2.57
1813 1973 6.531240 CCATTTCATTAACAACCCGAATGAAG 59.469 38.462 8.71 1.06 45.44 3.02
1814 1974 5.637006 TTCATTAACAACCCGAATGAAGG 57.363 39.130 5.41 0.00 42.02 3.46
1815 1975 4.658063 TCATTAACAACCCGAATGAAGGT 58.342 39.130 0.00 0.00 36.81 3.50
1816 1976 6.041069 TTTCATTAACAACCCGAATGAAGGTT 59.959 34.615 8.71 0.00 45.44 3.50
1817 1977 5.182380 TCATTAACAACCCGAATGAAGGTTC 59.818 40.000 0.00 0.00 44.61 3.62
1818 1978 1.905637 ACAACCCGAATGAAGGTTCC 58.094 50.000 0.00 0.00 44.61 3.62
1819 1979 1.423921 ACAACCCGAATGAAGGTTCCT 59.576 47.619 0.00 0.00 44.61 3.36
1820 1980 2.158519 ACAACCCGAATGAAGGTTCCTT 60.159 45.455 3.55 3.55 44.61 3.36
1821 1981 3.073356 ACAACCCGAATGAAGGTTCCTTA 59.927 43.478 3.93 0.00 44.61 2.69
1822 1982 4.263771 ACAACCCGAATGAAGGTTCCTTAT 60.264 41.667 3.93 0.00 44.61 1.73
1823 1983 3.886123 ACCCGAATGAAGGTTCCTTATG 58.114 45.455 3.93 0.00 29.94 1.90
1824 1984 3.521937 ACCCGAATGAAGGTTCCTTATGA 59.478 43.478 3.93 0.00 29.94 2.15
1825 1985 3.877508 CCCGAATGAAGGTTCCTTATGAC 59.122 47.826 3.93 0.00 0.00 3.06
1826 1986 4.384208 CCCGAATGAAGGTTCCTTATGACT 60.384 45.833 3.93 0.00 0.00 3.41
1827 1987 4.572389 CCGAATGAAGGTTCCTTATGACTG 59.428 45.833 3.93 0.00 0.00 3.51
1828 1988 5.419542 CGAATGAAGGTTCCTTATGACTGA 58.580 41.667 3.93 0.00 0.00 3.41
1829 1989 6.051717 CGAATGAAGGTTCCTTATGACTGAT 58.948 40.000 3.93 0.00 0.00 2.90
1830 1990 6.201806 CGAATGAAGGTTCCTTATGACTGATC 59.798 42.308 3.93 0.00 0.00 2.92
1831 1991 6.821616 ATGAAGGTTCCTTATGACTGATCT 57.178 37.500 3.93 0.00 0.00 2.75
1832 1992 5.982356 TGAAGGTTCCTTATGACTGATCTG 58.018 41.667 3.93 0.00 0.00 2.90
1833 1993 5.721480 TGAAGGTTCCTTATGACTGATCTGA 59.279 40.000 6.60 0.00 0.00 3.27
1834 1994 6.385176 TGAAGGTTCCTTATGACTGATCTGAT 59.615 38.462 6.60 0.00 0.00 2.90
1835 1995 7.565029 TGAAGGTTCCTTATGACTGATCTGATA 59.435 37.037 6.60 0.00 0.00 2.15
1836 1996 7.921041 AGGTTCCTTATGACTGATCTGATAA 57.079 36.000 6.60 0.89 0.00 1.75
1837 1997 7.731054 AGGTTCCTTATGACTGATCTGATAAC 58.269 38.462 6.60 0.00 0.00 1.89
1838 1998 6.931840 GGTTCCTTATGACTGATCTGATAACC 59.068 42.308 6.60 0.00 0.00 2.85
1839 1999 7.419057 GGTTCCTTATGACTGATCTGATAACCA 60.419 40.741 6.60 0.00 32.38 3.67
1840 2000 7.295322 TCCTTATGACTGATCTGATAACCAG 57.705 40.000 6.60 3.94 44.27 4.00
1853 2013 6.952773 CTGATAACCAGAAGTAGCTAGAGT 57.047 41.667 0.00 0.00 45.78 3.24
1854 2014 6.945938 TGATAACCAGAAGTAGCTAGAGTC 57.054 41.667 0.00 0.00 0.00 3.36
1855 2015 5.527951 TGATAACCAGAAGTAGCTAGAGTCG 59.472 44.000 0.00 0.00 0.00 4.18
1856 2016 2.645802 ACCAGAAGTAGCTAGAGTCGG 58.354 52.381 0.00 0.00 0.00 4.79
1857 2017 2.026075 ACCAGAAGTAGCTAGAGTCGGT 60.026 50.000 0.00 0.00 0.00 4.69
1858 2018 3.199508 ACCAGAAGTAGCTAGAGTCGGTA 59.800 47.826 0.00 0.00 0.00 4.02
1859 2019 3.810941 CCAGAAGTAGCTAGAGTCGGTAG 59.189 52.174 0.00 0.00 0.00 3.18
1860 2020 3.249080 CAGAAGTAGCTAGAGTCGGTAGC 59.751 52.174 0.00 3.72 42.85 3.58
1865 2025 2.691984 GCTAGAGTCGGTAGCTAAGC 57.308 55.000 0.00 0.00 39.93 3.09
1866 2026 2.223745 GCTAGAGTCGGTAGCTAAGCT 58.776 52.381 0.00 0.00 43.41 3.74
1867 2027 3.401182 GCTAGAGTCGGTAGCTAAGCTA 58.599 50.000 0.00 0.00 40.44 3.32
1868 2028 3.434299 GCTAGAGTCGGTAGCTAAGCTAG 59.566 52.174 0.00 2.28 42.11 3.42
1869 2029 3.842007 AGAGTCGGTAGCTAAGCTAGA 57.158 47.619 0.00 0.00 42.11 2.43
1870 2030 3.735591 AGAGTCGGTAGCTAAGCTAGAG 58.264 50.000 0.00 0.00 42.11 2.43
1871 2031 2.223745 AGTCGGTAGCTAAGCTAGAGC 58.776 52.381 11.71 11.71 42.11 4.09
1889 2049 2.863137 GAGCTCGATTGGTCAGTCATTC 59.137 50.000 0.00 0.00 34.88 2.67
1904 2064 2.992089 ATTCGGACACGGATGCATC 58.008 52.632 18.81 18.81 36.82 3.91
1919 2079 4.022416 GGATGCATCCAAAATTATACGGCA 60.022 41.667 35.93 0.00 46.38 5.69
1920 2080 4.566545 TGCATCCAAAATTATACGGCAG 57.433 40.909 0.00 0.00 0.00 4.85
1923 2083 4.275936 GCATCCAAAATTATACGGCAGACT 59.724 41.667 0.00 0.00 0.00 3.24
1929 2089 6.238103 CCAAAATTATACGGCAGACTGTACTG 60.238 42.308 3.99 0.00 40.45 2.74
1933 2093 1.738099 CGGCAGACTGTACTGGTGC 60.738 63.158 16.35 16.35 38.22 5.01
1934 2094 1.674057 GGCAGACTGTACTGGTGCT 59.326 57.895 20.94 7.45 38.22 4.40
1936 2098 0.605589 GCAGACTGTACTGGTGCTCT 59.394 55.000 16.99 4.16 38.22 4.09
1937 2099 1.819288 GCAGACTGTACTGGTGCTCTA 59.181 52.381 16.99 0.00 38.22 2.43
1938 2100 2.416162 GCAGACTGTACTGGTGCTCTAC 60.416 54.545 16.99 0.00 38.22 2.59
1952 2114 5.428253 GGTGCTCTACCTGATAAATGTCAA 58.572 41.667 0.00 0.00 46.51 3.18
1955 2117 6.017605 GTGCTCTACCTGATAAATGTCAATGG 60.018 42.308 0.00 0.00 0.00 3.16
1956 2118 6.058183 GCTCTACCTGATAAATGTCAATGGT 58.942 40.000 0.00 0.00 33.03 3.55
1957 2119 6.543831 GCTCTACCTGATAAATGTCAATGGTT 59.456 38.462 0.00 0.00 31.44 3.67
1959 2121 8.279970 TCTACCTGATAAATGTCAATGGTTTG 57.720 34.615 0.00 0.00 31.44 2.93
1960 2122 6.916360 ACCTGATAAATGTCAATGGTTTGT 57.084 33.333 0.00 0.00 34.32 2.83
1961 2123 6.924111 ACCTGATAAATGTCAATGGTTTGTC 58.076 36.000 0.00 0.00 34.32 3.18
1964 2126 8.739039 CCTGATAAATGTCAATGGTTTGTCTAA 58.261 33.333 0.00 0.00 34.32 2.10
2151 2313 4.096003 AACACCATCGAGGCCGGG 62.096 66.667 2.18 0.00 43.14 5.73
2174 2336 1.730501 CAGGTACCACACATGCTCTG 58.269 55.000 15.94 0.00 31.22 3.35
2175 2337 0.036010 AGGTACCACACATGCTCTGC 60.036 55.000 15.94 0.00 0.00 4.26
2176 2338 0.036010 GGTACCACACATGCTCTGCT 60.036 55.000 7.15 0.00 0.00 4.24
2177 2339 1.363744 GTACCACACATGCTCTGCTC 58.636 55.000 0.00 0.00 0.00 4.26
2178 2340 1.066573 GTACCACACATGCTCTGCTCT 60.067 52.381 0.00 0.00 0.00 4.09
2179 2341 1.269958 ACCACACATGCTCTGCTCTA 58.730 50.000 0.00 0.00 0.00 2.43
2180 2342 1.066573 ACCACACATGCTCTGCTCTAC 60.067 52.381 0.00 0.00 0.00 2.59
2181 2343 1.066645 CCACACATGCTCTGCTCTACA 60.067 52.381 0.00 0.00 0.00 2.74
2195 2357 3.309961 CTCTACAGAGCAAGTCAGCAA 57.690 47.619 0.00 0.00 35.13 3.91
2196 2358 2.992543 CTCTACAGAGCAAGTCAGCAAC 59.007 50.000 0.00 0.00 35.13 4.17
2197 2359 2.365293 TCTACAGAGCAAGTCAGCAACA 59.635 45.455 0.00 0.00 36.85 3.33
2198 2360 1.303309 ACAGAGCAAGTCAGCAACAC 58.697 50.000 0.00 0.00 36.85 3.32
2199 2361 1.302366 CAGAGCAAGTCAGCAACACA 58.698 50.000 0.00 0.00 36.85 3.72
2200 2362 1.878088 CAGAGCAAGTCAGCAACACAT 59.122 47.619 0.00 0.00 36.85 3.21
2201 2363 1.878088 AGAGCAAGTCAGCAACACATG 59.122 47.619 0.00 0.00 36.85 3.21
2216 2378 6.492007 CAACACATGCTCTTGTAATCTTCT 57.508 37.500 0.00 0.00 0.00 2.85
2217 2379 6.312487 CAACACATGCTCTTGTAATCTTCTG 58.688 40.000 0.00 0.00 0.00 3.02
2218 2380 5.798132 ACACATGCTCTTGTAATCTTCTGA 58.202 37.500 0.00 0.00 0.00 3.27
2219 2381 6.233434 ACACATGCTCTTGTAATCTTCTGAA 58.767 36.000 0.00 0.00 0.00 3.02
2220 2382 6.883217 ACACATGCTCTTGTAATCTTCTGAAT 59.117 34.615 0.00 0.00 0.00 2.57
2221 2383 8.043113 ACACATGCTCTTGTAATCTTCTGAATA 58.957 33.333 0.00 0.00 0.00 1.75
2222 2384 8.333908 CACATGCTCTTGTAATCTTCTGAATAC 58.666 37.037 0.00 0.00 0.00 1.89
2223 2385 7.497249 ACATGCTCTTGTAATCTTCTGAATACC 59.503 37.037 0.00 0.00 29.78 2.73
2224 2386 6.946340 TGCTCTTGTAATCTTCTGAATACCA 58.054 36.000 0.00 0.00 29.78 3.25
2225 2387 6.818644 TGCTCTTGTAATCTTCTGAATACCAC 59.181 38.462 0.00 0.00 29.78 4.16
2226 2388 7.044798 GCTCTTGTAATCTTCTGAATACCACT 58.955 38.462 0.00 0.00 29.78 4.00
2227 2389 8.198109 GCTCTTGTAATCTTCTGAATACCACTA 58.802 37.037 0.00 0.00 29.78 2.74
2237 2399 9.647918 TCTTCTGAATACCACTAATCTGTATCT 57.352 33.333 0.00 0.00 0.00 1.98
2238 2400 9.906660 CTTCTGAATACCACTAATCTGTATCTC 57.093 37.037 0.00 0.00 0.00 2.75
2239 2401 8.410673 TCTGAATACCACTAATCTGTATCTCC 57.589 38.462 0.00 0.00 0.00 3.71
2240 2402 7.451877 TCTGAATACCACTAATCTGTATCTCCC 59.548 40.741 0.00 0.00 0.00 4.30
2241 2403 7.306013 TGAATACCACTAATCTGTATCTCCCT 58.694 38.462 0.00 0.00 0.00 4.20
2242 2404 7.451877 TGAATACCACTAATCTGTATCTCCCTC 59.548 40.741 0.00 0.00 0.00 4.30
2243 2405 5.411103 ACCACTAATCTGTATCTCCCTCT 57.589 43.478 0.00 0.00 0.00 3.69
2244 2406 5.782925 ACCACTAATCTGTATCTCCCTCTT 58.217 41.667 0.00 0.00 0.00 2.85
2245 2407 5.600484 ACCACTAATCTGTATCTCCCTCTTG 59.400 44.000 0.00 0.00 0.00 3.02
2246 2408 5.600484 CCACTAATCTGTATCTCCCTCTTGT 59.400 44.000 0.00 0.00 0.00 3.16
2247 2409 6.239176 CCACTAATCTGTATCTCCCTCTTGTC 60.239 46.154 0.00 0.00 0.00 3.18
2248 2410 6.322456 CACTAATCTGTATCTCCCTCTTGTCA 59.678 42.308 0.00 0.00 0.00 3.58
2249 2411 7.015098 CACTAATCTGTATCTCCCTCTTGTCAT 59.985 40.741 0.00 0.00 0.00 3.06
2250 2412 6.821616 AATCTGTATCTCCCTCTTGTCATT 57.178 37.500 0.00 0.00 0.00 2.57
2251 2413 6.821616 ATCTGTATCTCCCTCTTGTCATTT 57.178 37.500 0.00 0.00 0.00 2.32
2252 2414 6.627087 TCTGTATCTCCCTCTTGTCATTTT 57.373 37.500 0.00 0.00 0.00 1.82
2253 2415 7.733773 TCTGTATCTCCCTCTTGTCATTTTA 57.266 36.000 0.00 0.00 0.00 1.52
2254 2416 7.556844 TCTGTATCTCCCTCTTGTCATTTTAC 58.443 38.462 0.00 0.00 0.00 2.01
2255 2417 6.650120 TGTATCTCCCTCTTGTCATTTTACC 58.350 40.000 0.00 0.00 0.00 2.85
2256 2418 6.443849 TGTATCTCCCTCTTGTCATTTTACCT 59.556 38.462 0.00 0.00 0.00 3.08
2257 2419 5.843019 TCTCCCTCTTGTCATTTTACCTT 57.157 39.130 0.00 0.00 0.00 3.50
2258 2420 5.805728 TCTCCCTCTTGTCATTTTACCTTC 58.194 41.667 0.00 0.00 0.00 3.46
2259 2421 5.309543 TCTCCCTCTTGTCATTTTACCTTCA 59.690 40.000 0.00 0.00 0.00 3.02
2260 2422 6.012508 TCTCCCTCTTGTCATTTTACCTTCAT 60.013 38.462 0.00 0.00 0.00 2.57
2261 2423 6.552008 TCCCTCTTGTCATTTTACCTTCATT 58.448 36.000 0.00 0.00 0.00 2.57
2327 2589 1.272313 ACCTACTGGACCGTAAGCTCA 60.272 52.381 0.00 0.00 37.04 4.26
2332 2594 2.230750 ACTGGACCGTAAGCTCACTAAC 59.769 50.000 0.00 0.00 0.00 2.34
2334 2596 1.823610 GGACCGTAAGCTCACTAACCT 59.176 52.381 0.00 0.00 0.00 3.50
2335 2597 2.233186 GGACCGTAAGCTCACTAACCTT 59.767 50.000 0.00 0.00 0.00 3.50
2338 2600 3.194329 ACCGTAAGCTCACTAACCTTACC 59.806 47.826 0.00 0.00 38.30 2.85
2341 2603 5.232463 CGTAAGCTCACTAACCTTACCAAA 58.768 41.667 0.00 0.00 38.30 3.28
2343 2605 6.183360 CGTAAGCTCACTAACCTTACCAAATG 60.183 42.308 0.00 0.00 38.30 2.32
2345 2607 6.067217 AGCTCACTAACCTTACCAAATGAT 57.933 37.500 0.00 0.00 0.00 2.45
2346 2608 5.882557 AGCTCACTAACCTTACCAAATGATG 59.117 40.000 0.00 0.00 0.00 3.07
2347 2609 5.648092 GCTCACTAACCTTACCAAATGATGT 59.352 40.000 0.00 0.00 0.00 3.06
2348 2610 6.183360 GCTCACTAACCTTACCAAATGATGTC 60.183 42.308 0.00 0.00 0.00 3.06
2352 2614 5.371115 AACCTTACCAAATGATGTCGTTG 57.629 39.130 0.00 0.00 0.00 4.10
2355 2617 4.320861 CCTTACCAAATGATGTCGTTGCAA 60.321 41.667 0.00 0.00 0.00 4.08
2356 2618 3.724508 ACCAAATGATGTCGTTGCAAA 57.275 38.095 0.00 0.00 0.00 3.68
2357 2619 3.641648 ACCAAATGATGTCGTTGCAAAG 58.358 40.909 0.00 2.46 0.00 2.77
2359 2621 4.050553 CCAAATGATGTCGTTGCAAAGTT 58.949 39.130 12.18 0.00 0.00 2.66
2363 2625 4.209452 TGATGTCGTTGCAAAGTTTCTC 57.791 40.909 12.18 6.25 0.00 2.87
2382 2644 4.058124 TCTCAGTGTTCGTCCATGAAAAG 58.942 43.478 0.00 0.00 0.00 2.27
2417 2680 6.084326 AGGTTAAATTCTTGTGCGAAATGT 57.916 33.333 0.00 0.00 0.00 2.71
2422 2685 6.932901 AAATTCTTGTGCGAAATGTATGTG 57.067 33.333 0.00 0.00 0.00 3.21
2498 2767 1.594293 CTTCGTGCAGACCAACGGT 60.594 57.895 0.00 0.00 39.44 4.83
2573 2842 2.584492 TCGACATCACGCTCATGATT 57.416 45.000 0.00 0.00 37.20 2.57
2979 3348 1.534235 CGGTGCCCCTAGCTAGGAT 60.534 63.158 36.80 0.00 46.63 3.24
2991 3360 1.887198 AGCTAGGATGGAACCGATACG 59.113 52.381 0.00 0.00 34.73 3.06
3091 3462 8.173542 TGCATGCTTGTTTATGATCATAGATT 57.826 30.769 20.33 0.00 0.00 2.40
3092 3463 8.635328 TGCATGCTTGTTTATGATCATAGATTT 58.365 29.630 20.33 0.00 0.00 2.17
3126 3497 9.565213 TTTTTGCACTCCAATTTAACAAAAATG 57.435 25.926 0.00 0.00 39.33 2.32
3127 3498 6.297694 TGCACTCCAATTTAACAAAAATGC 57.702 33.333 0.00 0.00 0.00 3.56
3128 3499 6.054295 TGCACTCCAATTTAACAAAAATGCT 58.946 32.000 0.00 0.00 0.00 3.79
3129 3500 7.212976 TGCACTCCAATTTAACAAAAATGCTA 58.787 30.769 0.00 0.00 0.00 3.49
3130 3501 7.170658 TGCACTCCAATTTAACAAAAATGCTAC 59.829 33.333 0.00 0.00 0.00 3.58
3131 3502 7.170658 GCACTCCAATTTAACAAAAATGCTACA 59.829 33.333 0.00 0.00 0.00 2.74
3132 3503 8.487176 CACTCCAATTTAACAAAAATGCTACAC 58.513 33.333 0.00 0.00 0.00 2.90
3133 3504 8.421002 ACTCCAATTTAACAAAAATGCTACACT 58.579 29.630 0.00 0.00 0.00 3.55
3134 3505 8.586570 TCCAATTTAACAAAAATGCTACACTG 57.413 30.769 0.00 0.00 0.00 3.66
3135 3506 8.417106 TCCAATTTAACAAAAATGCTACACTGA 58.583 29.630 0.00 0.00 0.00 3.41
3136 3507 8.702438 CCAATTTAACAAAAATGCTACACTGAG 58.298 33.333 0.00 0.00 0.00 3.35
3137 3508 8.702438 CAATTTAACAAAAATGCTACACTGAGG 58.298 33.333 0.00 0.00 0.00 3.86
3138 3509 6.952773 TTAACAAAAATGCTACACTGAGGT 57.047 33.333 0.00 0.00 0.00 3.85
3139 3510 8.453238 TTTAACAAAAATGCTACACTGAGGTA 57.547 30.769 0.00 0.00 0.00 3.08
3140 3511 6.952773 AACAAAAATGCTACACTGAGGTAA 57.047 33.333 0.00 0.00 0.00 2.85
3141 3512 6.560253 ACAAAAATGCTACACTGAGGTAAG 57.440 37.500 0.00 0.00 0.00 2.34
3142 3513 6.062095 ACAAAAATGCTACACTGAGGTAAGT 58.938 36.000 0.00 0.00 0.00 2.24
3143 3514 6.546034 ACAAAAATGCTACACTGAGGTAAGTT 59.454 34.615 0.00 0.00 0.00 2.66
3144 3515 7.717875 ACAAAAATGCTACACTGAGGTAAGTTA 59.282 33.333 0.00 0.00 0.00 2.24
3145 3516 7.668525 AAAATGCTACACTGAGGTAAGTTAC 57.331 36.000 4.32 4.32 0.00 2.50
3146 3517 4.430137 TGCTACACTGAGGTAAGTTACG 57.570 45.455 6.94 0.00 0.00 3.18
3147 3518 3.822735 TGCTACACTGAGGTAAGTTACGT 59.177 43.478 7.93 7.93 0.00 3.57
3148 3519 4.279169 TGCTACACTGAGGTAAGTTACGTT 59.721 41.667 9.47 0.00 0.00 3.99
3149 3520 4.855937 GCTACACTGAGGTAAGTTACGTTC 59.144 45.833 9.47 8.91 0.00 3.95
3150 3521 5.335504 GCTACACTGAGGTAAGTTACGTTCT 60.336 44.000 9.47 0.29 0.00 3.01
3151 3522 5.118642 ACACTGAGGTAAGTTACGTTCTC 57.881 43.478 9.47 9.53 0.00 2.87
3152 3523 4.022503 ACACTGAGGTAAGTTACGTTCTCC 60.023 45.833 9.47 0.00 0.00 3.71
3153 3524 4.217983 CACTGAGGTAAGTTACGTTCTCCT 59.782 45.833 9.47 0.00 0.00 3.69
3154 3525 4.458642 ACTGAGGTAAGTTACGTTCTCCTC 59.541 45.833 9.47 15.09 39.97 3.71
3155 3526 4.660168 TGAGGTAAGTTACGTTCTCCTCT 58.340 43.478 19.10 0.00 40.14 3.69
3156 3527 5.075493 TGAGGTAAGTTACGTTCTCCTCTT 58.925 41.667 19.10 9.17 40.14 2.85
3157 3528 6.240894 TGAGGTAAGTTACGTTCTCCTCTTA 58.759 40.000 19.10 8.51 40.14 2.10
3158 3529 6.888632 TGAGGTAAGTTACGTTCTCCTCTTAT 59.111 38.462 19.10 0.01 40.14 1.73
3159 3530 7.098074 AGGTAAGTTACGTTCTCCTCTTATG 57.902 40.000 6.94 0.00 0.00 1.90
3160 3531 6.662663 AGGTAAGTTACGTTCTCCTCTTATGT 59.337 38.462 6.94 0.00 0.00 2.29
3161 3532 7.831193 AGGTAAGTTACGTTCTCCTCTTATGTA 59.169 37.037 6.94 0.00 0.00 2.29
3162 3533 8.462016 GGTAAGTTACGTTCTCCTCTTATGTAA 58.538 37.037 6.94 0.00 0.00 2.41
3163 3534 9.283420 GTAAGTTACGTTCTCCTCTTATGTAAC 57.717 37.037 0.00 0.00 41.34 2.50
3164 3535 6.861144 AGTTACGTTCTCCTCTTATGTAACC 58.139 40.000 0.00 0.00 41.68 2.85
3165 3536 6.662663 AGTTACGTTCTCCTCTTATGTAACCT 59.337 38.462 0.00 0.00 41.68 3.50
3166 3537 5.997384 ACGTTCTCCTCTTATGTAACCTT 57.003 39.130 0.00 0.00 0.00 3.50
3167 3538 5.963594 ACGTTCTCCTCTTATGTAACCTTC 58.036 41.667 0.00 0.00 0.00 3.46
3168 3539 5.715753 ACGTTCTCCTCTTATGTAACCTTCT 59.284 40.000 0.00 0.00 0.00 2.85
3169 3540 6.210984 ACGTTCTCCTCTTATGTAACCTTCTT 59.789 38.462 0.00 0.00 0.00 2.52
3170 3541 7.395489 ACGTTCTCCTCTTATGTAACCTTCTTA 59.605 37.037 0.00 0.00 0.00 2.10
3171 3542 8.248945 CGTTCTCCTCTTATGTAACCTTCTTAA 58.751 37.037 0.00 0.00 0.00 1.85
3183 3554 9.802039 ATGTAACCTTCTTAATAAACCACTTCA 57.198 29.630 0.00 0.00 0.00 3.02
3184 3555 9.802039 TGTAACCTTCTTAATAAACCACTTCAT 57.198 29.630 0.00 0.00 0.00 2.57
3186 3557 7.939784 ACCTTCTTAATAAACCACTTCATCC 57.060 36.000 0.00 0.00 0.00 3.51
3187 3558 6.890268 ACCTTCTTAATAAACCACTTCATCCC 59.110 38.462 0.00 0.00 0.00 3.85
3188 3559 6.321435 CCTTCTTAATAAACCACTTCATCCCC 59.679 42.308 0.00 0.00 0.00 4.81
3189 3560 6.652205 TCTTAATAAACCACTTCATCCCCT 57.348 37.500 0.00 0.00 0.00 4.79
3190 3561 6.423182 TCTTAATAAACCACTTCATCCCCTG 58.577 40.000 0.00 0.00 0.00 4.45
3191 3562 4.946160 AATAAACCACTTCATCCCCTGA 57.054 40.909 0.00 0.00 0.00 3.86
3192 3563 5.472301 AATAAACCACTTCATCCCCTGAT 57.528 39.130 0.00 0.00 32.72 2.90
3193 3564 3.833559 AAACCACTTCATCCCCTGATT 57.166 42.857 0.00 0.00 32.72 2.57
3194 3565 3.833559 AACCACTTCATCCCCTGATTT 57.166 42.857 0.00 0.00 32.72 2.17
3195 3566 3.372440 ACCACTTCATCCCCTGATTTC 57.628 47.619 0.00 0.00 32.72 2.17
3196 3567 2.649312 ACCACTTCATCCCCTGATTTCA 59.351 45.455 0.00 0.00 32.72 2.69
3197 3568 3.075882 ACCACTTCATCCCCTGATTTCAA 59.924 43.478 0.00 0.00 32.72 2.69
3198 3569 3.698040 CCACTTCATCCCCTGATTTCAAG 59.302 47.826 0.00 0.00 32.72 3.02
3199 3570 4.338879 CACTTCATCCCCTGATTTCAAGT 58.661 43.478 0.00 0.00 32.72 3.16
3200 3571 4.157289 CACTTCATCCCCTGATTTCAAGTG 59.843 45.833 0.00 0.00 33.62 3.16
3201 3572 3.370840 TCATCCCCTGATTTCAAGTGG 57.629 47.619 0.00 0.00 0.00 4.00
3202 3573 2.025037 TCATCCCCTGATTTCAAGTGGG 60.025 50.000 0.00 0.00 37.68 4.61
3203 3574 0.039618 TCCCCTGATTTCAAGTGGGC 59.960 55.000 0.00 0.00 36.66 5.36
3204 3575 1.315257 CCCCTGATTTCAAGTGGGCG 61.315 60.000 0.00 0.00 36.66 6.13
3205 3576 1.315257 CCCTGATTTCAAGTGGGCGG 61.315 60.000 0.00 0.00 0.00 6.13
3206 3577 1.315257 CCTGATTTCAAGTGGGCGGG 61.315 60.000 0.00 0.00 0.00 6.13
3207 3578 1.937546 CTGATTTCAAGTGGGCGGGC 61.938 60.000 0.00 0.00 0.00 6.13
3208 3579 2.679996 ATTTCAAGTGGGCGGGCC 60.680 61.111 14.65 14.65 0.00 5.80
3219 3590 2.444140 GCGGGCCCCTCTCTTCTA 60.444 66.667 18.66 0.00 0.00 2.10
3220 3591 2.064581 GCGGGCCCCTCTCTTCTAA 61.065 63.158 18.66 0.00 0.00 2.10
3221 3592 1.411651 GCGGGCCCCTCTCTTCTAAT 61.412 60.000 18.66 0.00 0.00 1.73
3222 3593 1.132500 CGGGCCCCTCTCTTCTAATT 58.868 55.000 18.66 0.00 0.00 1.40
3223 3594 1.070914 CGGGCCCCTCTCTTCTAATTC 59.929 57.143 18.66 0.00 0.00 2.17
3228 3599 3.392616 GCCCCTCTCTTCTAATTCATCCA 59.607 47.826 0.00 0.00 0.00 3.41
3261 3632 3.806380 ACAACGTTAACACCCACACATA 58.194 40.909 0.00 0.00 0.00 2.29
3300 3671 2.419574 GCCCACACGTCCTATAACACAT 60.420 50.000 0.00 0.00 0.00 3.21
3304 3675 5.010719 CCCACACGTCCTATAACACATAGAT 59.989 44.000 0.00 0.00 0.00 1.98
3336 3707 1.241165 CCGTATGCATGCATGTGGAT 58.759 50.000 37.43 18.01 37.82 3.41
3424 3898 6.184068 TCCGTTTTCATCATTAAATCCCTCA 58.816 36.000 0.00 0.00 0.00 3.86
3537 4017 6.000840 TGCCATGATGTTTACACTGAAGTTA 58.999 36.000 0.00 0.00 0.00 2.24
3544 4024 6.854496 TGTTTACACTGAAGTTACCATGAC 57.146 37.500 0.00 0.00 0.00 3.06
3552 4032 5.179368 ACTGAAGTTACCATGACATGTTTCG 59.821 40.000 14.26 1.60 0.00 3.46
3622 4153 7.486407 ACGGGGAATTAAGAAACTAGACTTA 57.514 36.000 0.00 0.99 0.00 2.24
3724 4255 7.043565 GGTCAAATTACTGAAATTGCCATCAT 58.956 34.615 0.00 0.00 37.85 2.45
3771 4303 7.283625 TCTACAAACTAAAATTGCCACATGT 57.716 32.000 0.00 0.00 0.00 3.21
3797 4395 8.988934 TCAACTTTAGTTTAAGCACTATGACAG 58.011 33.333 0.00 0.00 35.83 3.51
3888 4577 7.036220 GGTCTAGTTTTGAAGATCTCATCGAA 58.964 38.462 0.00 0.00 32.78 3.71
3909 4598 7.024768 TCGAAACGGATTTAATGATGAAAACC 58.975 34.615 0.00 0.00 0.00 3.27
3970 4661 8.978564 AACATTTTTAAGCCAAAAACCAAAAG 57.021 26.923 8.31 0.55 46.19 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.099197 CGCGCAATAATACGAAAAACGC 60.099 45.455 8.75 0.00 46.94 4.84
3 4 3.060496 TCGACGCGCAATAATACGAAAAA 59.940 39.130 5.73 0.00 0.00 1.94
20 21 3.673338 TCTGCATAGTTGAGTTTTCGACG 59.327 43.478 0.00 0.00 41.76 5.12
34 35 6.614160 TGTGAAAACACATGAATCTGCATAG 58.386 36.000 0.00 0.00 0.00 2.23
47 48 3.554934 AGCAGAGGATTGTGAAAACACA 58.445 40.909 0.00 0.00 0.00 3.72
67 68 5.991328 AATATAGGATGACACGTGCAAAG 57.009 39.130 17.22 0.00 0.00 2.77
111 112 4.654262 AGGGCTTATTTGATTCGTAGGAGA 59.346 41.667 0.00 0.00 0.00 3.71
112 113 4.962155 AGGGCTTATTTGATTCGTAGGAG 58.038 43.478 0.00 0.00 0.00 3.69
113 114 6.325545 TCTTAGGGCTTATTTGATTCGTAGGA 59.674 38.462 0.00 0.00 0.00 2.94
114 115 6.522054 TCTTAGGGCTTATTTGATTCGTAGG 58.478 40.000 0.00 0.00 0.00 3.18
115 116 9.360093 CTATCTTAGGGCTTATTTGATTCGTAG 57.640 37.037 0.00 0.00 0.00 3.51
116 117 9.085645 TCTATCTTAGGGCTTATTTGATTCGTA 57.914 33.333 0.00 0.00 0.00 3.43
117 118 7.963532 TCTATCTTAGGGCTTATTTGATTCGT 58.036 34.615 0.00 0.00 0.00 3.85
118 119 8.833231 TTCTATCTTAGGGCTTATTTGATTCG 57.167 34.615 0.00 0.00 0.00 3.34
151 153 4.823989 CAGACACTTTCTCACCCAAATTCT 59.176 41.667 0.00 0.00 28.96 2.40
159 161 3.929610 GTGATAGCAGACACTTTCTCACC 59.070 47.826 0.00 0.00 34.65 4.02
164 166 6.486253 TTTCATGTGATAGCAGACACTTTC 57.514 37.500 0.00 0.00 37.81 2.62
178 180 9.591792 TGTACAATTCATTTGTTTTTCATGTGA 57.408 25.926 0.00 0.00 46.51 3.58
236 242 7.712639 TCCTATCATTCACTTGCACTCTATTTC 59.287 37.037 0.00 0.00 0.00 2.17
242 248 6.500684 TTTTCCTATCATTCACTTGCACTC 57.499 37.500 0.00 0.00 0.00 3.51
267 273 7.888514 TCATAGTAATGGTATCCTTGGGATT 57.111 36.000 4.31 0.00 37.38 3.01
268 274 7.888514 TTCATAGTAATGGTATCCTTGGGAT 57.111 36.000 4.43 4.43 38.62 3.85
355 362 5.718130 TCTGATGGCTCCTTTGATTGAAAAT 59.282 36.000 0.00 0.00 0.00 1.82
360 367 4.015084 ACTTCTGATGGCTCCTTTGATTG 58.985 43.478 0.00 0.00 0.00 2.67
375 382 2.108168 AGGGCACGCTATTACTTCTGA 58.892 47.619 0.00 0.00 0.00 3.27
376 383 2.205074 CAGGGCACGCTATTACTTCTG 58.795 52.381 0.00 0.00 0.00 3.02
377 384 1.139058 CCAGGGCACGCTATTACTTCT 59.861 52.381 0.00 0.00 0.00 2.85
378 385 1.138266 TCCAGGGCACGCTATTACTTC 59.862 52.381 0.00 0.00 0.00 3.01
379 386 1.200519 TCCAGGGCACGCTATTACTT 58.799 50.000 0.00 0.00 0.00 2.24
380 387 1.200519 TTCCAGGGCACGCTATTACT 58.799 50.000 0.00 0.00 0.00 2.24
381 388 2.143925 GATTCCAGGGCACGCTATTAC 58.856 52.381 0.00 0.00 0.00 1.89
382 389 1.071699 GGATTCCAGGGCACGCTATTA 59.928 52.381 0.00 0.00 0.00 0.98
383 390 0.179018 GGATTCCAGGGCACGCTATT 60.179 55.000 0.00 0.00 0.00 1.73
384 391 1.344953 TGGATTCCAGGGCACGCTAT 61.345 55.000 0.00 0.00 0.00 2.97
385 392 1.992834 TGGATTCCAGGGCACGCTA 60.993 57.895 0.00 0.00 0.00 4.26
386 393 3.329889 TGGATTCCAGGGCACGCT 61.330 61.111 0.00 0.00 0.00 5.07
411 418 5.949952 AGGTTTTACATCCTGTTACCAATCC 59.050 40.000 0.00 0.00 31.64 3.01
434 483 1.451028 GCTGGGTTAGGCAGAGCAG 60.451 63.158 0.00 0.00 0.00 4.24
449 498 2.983402 CAATGTCCAGAACACTGCTG 57.017 50.000 0.00 0.00 41.75 4.41
481 537 2.666317 TCTCCATGTGCCGAGAGATTA 58.334 47.619 0.00 0.00 31.53 1.75
511 567 1.683943 TTTCTTTCTGCTGCTGTGCT 58.316 45.000 0.00 0.00 0.00 4.40
512 568 2.391879 CTTTTCTTTCTGCTGCTGTGC 58.608 47.619 0.00 0.00 0.00 4.57
514 570 2.305009 AGCTTTTCTTTCTGCTGCTGT 58.695 42.857 0.00 0.00 34.19 4.40
515 571 3.251729 TGTAGCTTTTCTTTCTGCTGCTG 59.748 43.478 0.00 0.00 38.59 4.41
516 572 3.480470 TGTAGCTTTTCTTTCTGCTGCT 58.520 40.909 0.00 0.00 38.59 4.24
577 640 5.232202 GCTGCACTTTTGGTCTTTCTTTTAC 59.768 40.000 0.00 0.00 0.00 2.01
745 817 4.803426 GTCTCTGCGCTCCGGTGG 62.803 72.222 9.73 0.00 0.00 4.61
774 846 1.789464 GCGAGACGGAATTATCAGCAG 59.211 52.381 0.00 0.00 0.00 4.24
779 851 1.789464 CAGCAGCGAGACGGAATTATC 59.211 52.381 0.00 0.00 0.00 1.75
846 937 6.815641 CCTGCTGGCTATAAATACAGATACAG 59.184 42.308 0.00 0.00 32.86 2.74
847 938 6.496911 TCCTGCTGGCTATAAATACAGATACA 59.503 38.462 4.42 0.00 32.86 2.29
848 939 6.936279 TCCTGCTGGCTATAAATACAGATAC 58.064 40.000 4.42 0.00 32.86 2.24
849 940 6.155221 CCTCCTGCTGGCTATAAATACAGATA 59.845 42.308 4.42 0.00 32.86 1.98
850 941 5.046014 CCTCCTGCTGGCTATAAATACAGAT 60.046 44.000 4.42 0.00 32.86 2.90
851 942 4.284490 CCTCCTGCTGGCTATAAATACAGA 59.716 45.833 4.42 0.00 32.86 3.41
852 943 4.564406 CCCTCCTGCTGGCTATAAATACAG 60.564 50.000 4.42 0.00 0.00 2.74
907 1001 6.223351 AGCTTTAATACTCTTCTAAGGCGT 57.777 37.500 0.00 0.00 34.03 5.68
949 1067 3.669251 ATTTCGTAGCAGCCTAGGATC 57.331 47.619 14.75 0.11 38.02 3.36
950 1068 3.388024 TGAATTTCGTAGCAGCCTAGGAT 59.612 43.478 14.75 1.88 38.02 3.24
969 1107 2.667418 GAGCAGAGCTGGCCTGAA 59.333 61.111 14.77 0.00 39.88 3.02
1015 1153 1.656818 AACGAGGCAATGATTGGGCG 61.657 55.000 7.35 0.00 34.32 6.13
1188 1337 1.308998 AACAAAGGAGCAGAACGTGG 58.691 50.000 0.00 0.00 0.00 4.94
1204 1353 8.588789 CAAATAATACGTACGATGTGAGAAACA 58.411 33.333 24.41 0.00 44.79 2.83
1208 1357 6.914215 GGACAAATAATACGTACGATGTGAGA 59.086 38.462 24.41 0.29 0.00 3.27
1209 1358 6.143438 GGGACAAATAATACGTACGATGTGAG 59.857 42.308 24.41 7.00 0.00 3.51
1235 1384 3.975168 ACTACGTACCTGGCAAGAAAT 57.025 42.857 0.00 0.00 0.00 2.17
1243 1392 6.054295 AGATCAGTTAGTACTACGTACCTGG 58.946 44.000 0.91 0.00 39.58 4.45
1248 1397 7.708322 ACGATGAAGATCAGTTAGTACTACGTA 59.292 37.037 0.91 0.00 31.96 3.57
1251 1400 9.224058 GAAACGATGAAGATCAGTTAGTACTAC 57.776 37.037 0.91 0.00 31.96 2.73
1252 1401 8.121086 CGAAACGATGAAGATCAGTTAGTACTA 58.879 37.037 0.00 0.00 31.96 1.82
1254 1403 6.291164 GCGAAACGATGAAGATCAGTTAGTAC 60.291 42.308 0.00 0.00 30.33 2.73
1256 1405 4.563184 GCGAAACGATGAAGATCAGTTAGT 59.437 41.667 0.00 0.00 30.33 2.24
1257 1406 4.562789 TGCGAAACGATGAAGATCAGTTAG 59.437 41.667 0.00 0.00 30.33 2.34
1258 1407 4.490743 TGCGAAACGATGAAGATCAGTTA 58.509 39.130 0.00 0.00 30.33 2.24
1259 1408 3.325870 TGCGAAACGATGAAGATCAGTT 58.674 40.909 0.00 0.00 31.16 3.16
1260 1409 2.926200 CTGCGAAACGATGAAGATCAGT 59.074 45.455 0.00 0.00 0.00 3.41
1261 1410 3.182182 TCTGCGAAACGATGAAGATCAG 58.818 45.455 0.00 0.00 0.00 2.90
1262 1411 3.182182 CTCTGCGAAACGATGAAGATCA 58.818 45.455 0.00 0.00 0.00 2.92
1263 1412 2.034170 GCTCTGCGAAACGATGAAGATC 60.034 50.000 0.00 0.00 0.00 2.75
1264 1413 1.929836 GCTCTGCGAAACGATGAAGAT 59.070 47.619 0.00 0.00 0.00 2.40
1266 1415 0.371645 GGCTCTGCGAAACGATGAAG 59.628 55.000 0.00 0.00 0.00 3.02
1267 1416 1.019278 GGGCTCTGCGAAACGATGAA 61.019 55.000 0.00 0.00 0.00 2.57
1268 1417 1.447838 GGGCTCTGCGAAACGATGA 60.448 57.895 0.00 0.00 0.00 2.92
1269 1418 1.448540 AGGGCTCTGCGAAACGATG 60.449 57.895 0.00 0.00 0.00 3.84
1270 1419 1.448540 CAGGGCTCTGCGAAACGAT 60.449 57.895 0.00 0.00 33.86 3.73
1271 1420 2.048222 CAGGGCTCTGCGAAACGA 60.048 61.111 0.00 0.00 33.86 3.85
1272 1421 2.048222 TCAGGGCTCTGCGAAACG 60.048 61.111 9.36 0.00 40.69 3.60
1273 1422 2.383527 CGTCAGGGCTCTGCGAAAC 61.384 63.158 21.08 8.61 40.38 2.78
1274 1423 2.048222 CGTCAGGGCTCTGCGAAA 60.048 61.111 21.08 0.00 40.38 3.46
1275 1424 4.069232 CCGTCAGGGCTCTGCGAA 62.069 66.667 25.44 0.59 40.38 4.70
1374 1523 4.150627 CCAGTCAATCAGAACAACACTACG 59.849 45.833 0.00 0.00 0.00 3.51
1376 1525 4.065088 GCCAGTCAATCAGAACAACACTA 58.935 43.478 0.00 0.00 0.00 2.74
1397 1546 2.740055 CAGCCGGTCAGTCACTGC 60.740 66.667 1.90 0.00 0.00 4.40
1398 1547 2.740055 GCAGCCGGTCAGTCACTG 60.740 66.667 1.90 0.00 0.00 3.66
1399 1548 2.116983 ATTGCAGCCGGTCAGTCACT 62.117 55.000 1.90 0.00 0.00 3.41
1400 1549 1.672356 ATTGCAGCCGGTCAGTCAC 60.672 57.895 1.90 0.00 0.00 3.67
1401 1550 1.672030 CATTGCAGCCGGTCAGTCA 60.672 57.895 1.90 0.00 0.00 3.41
1402 1551 1.672356 ACATTGCAGCCGGTCAGTC 60.672 57.895 1.90 0.00 0.00 3.51
1431 1580 1.374758 CCTCAAGGACAGACGTGGC 60.375 63.158 0.00 0.00 37.39 5.01
1432 1581 0.319900 CACCTCAAGGACAGACGTGG 60.320 60.000 2.30 0.00 38.94 4.94
1434 1583 1.546476 GATCACCTCAAGGACAGACGT 59.454 52.381 2.30 0.00 38.94 4.34
1449 1598 4.641989 ACCAAGCATTCCATTACTGATCAC 59.358 41.667 0.00 0.00 0.00 3.06
1476 1628 4.379243 AGGTTCGTCCTGCAGCCG 62.379 66.667 8.66 12.86 46.19 5.52
1521 1673 1.176619 TCCTCTTCGTCGTCTGCCAA 61.177 55.000 0.00 0.00 0.00 4.52
1535 1690 2.604686 TGCGGCAAGACCTCCTCT 60.605 61.111 0.00 0.00 35.61 3.69
1611 1766 3.706373 GAGCAGGTCGCCCTCCAA 61.706 66.667 0.00 0.00 44.04 3.53
1734 1893 2.786495 GCCTGAATCGAGGGAGCGA 61.786 63.158 0.00 0.00 45.22 4.93
1736 1895 0.972883 ATAGCCTGAATCGAGGGAGC 59.027 55.000 0.00 0.00 33.17 4.70
1744 1903 3.484407 AGTGCCAATCATAGCCTGAATC 58.516 45.455 0.00 0.00 37.44 2.52
1751 1911 3.386543 ACGGAGTGCCAATCATAGC 57.613 52.632 0.00 0.00 42.51 2.97
1769 1929 2.820105 TGGACTTCCGTACATGGAGACA 60.820 50.000 0.00 0.00 42.21 3.41
1770 1930 1.822990 TGGACTTCCGTACATGGAGAC 59.177 52.381 0.00 0.00 39.72 3.36
1771 1931 2.225382 TGGACTTCCGTACATGGAGA 57.775 50.000 0.00 0.00 39.72 3.71
1772 1932 3.543680 AATGGACTTCCGTACATGGAG 57.456 47.619 0.00 0.00 43.97 3.86
1773 1933 3.262151 TGAAATGGACTTCCGTACATGGA 59.738 43.478 0.00 0.00 43.97 3.41
1774 1934 3.605634 TGAAATGGACTTCCGTACATGG 58.394 45.455 0.00 0.00 43.97 3.66
1775 1935 5.818136 AATGAAATGGACTTCCGTACATG 57.182 39.130 9.44 0.00 43.97 3.21
1776 1936 6.882140 TGTTAATGAAATGGACTTCCGTACAT 59.118 34.615 0.00 0.00 46.74 2.29
1777 1937 6.231951 TGTTAATGAAATGGACTTCCGTACA 58.768 36.000 0.00 0.00 38.62 2.90
1778 1938 6.730960 TGTTAATGAAATGGACTTCCGTAC 57.269 37.500 0.00 0.00 39.43 3.67
1779 1939 6.149807 GGTTGTTAATGAAATGGACTTCCGTA 59.850 38.462 0.00 0.00 39.43 4.02
1780 1940 5.048294 GGTTGTTAATGAAATGGACTTCCGT 60.048 40.000 0.00 0.00 39.43 4.69
1781 1941 5.399013 GGTTGTTAATGAAATGGACTTCCG 58.601 41.667 0.00 0.00 39.43 4.30
1782 1942 5.621329 CGGGTTGTTAATGAAATGGACTTCC 60.621 44.000 0.00 0.00 0.00 3.46
1783 1943 5.182380 TCGGGTTGTTAATGAAATGGACTTC 59.818 40.000 0.00 0.00 0.00 3.01
1784 1944 5.074115 TCGGGTTGTTAATGAAATGGACTT 58.926 37.500 0.00 0.00 0.00 3.01
1785 1945 4.658063 TCGGGTTGTTAATGAAATGGACT 58.342 39.130 0.00 0.00 0.00 3.85
1786 1946 5.379732 TTCGGGTTGTTAATGAAATGGAC 57.620 39.130 0.00 0.00 0.00 4.02
1787 1947 5.712446 TCATTCGGGTTGTTAATGAAATGGA 59.288 36.000 0.00 0.00 36.85 3.41
1788 1948 5.960113 TCATTCGGGTTGTTAATGAAATGG 58.040 37.500 0.00 0.00 36.85 3.16
1789 1949 6.531240 CCTTCATTCGGGTTGTTAATGAAATG 59.469 38.462 10.03 0.00 44.58 2.32
1790 1950 6.210584 ACCTTCATTCGGGTTGTTAATGAAAT 59.789 34.615 10.03 1.29 44.58 2.17
1791 1951 5.536916 ACCTTCATTCGGGTTGTTAATGAAA 59.463 36.000 10.03 0.00 44.58 2.69
1792 1952 5.074115 ACCTTCATTCGGGTTGTTAATGAA 58.926 37.500 8.83 8.83 43.65 2.57
1793 1953 4.658063 ACCTTCATTCGGGTTGTTAATGA 58.342 39.130 0.00 0.00 37.73 2.57
1794 1954 5.385509 AACCTTCATTCGGGTTGTTAATG 57.614 39.130 0.00 0.00 43.28 1.90
1795 1955 4.461431 GGAACCTTCATTCGGGTTGTTAAT 59.539 41.667 1.93 0.00 44.69 1.40
1796 1956 3.822167 GGAACCTTCATTCGGGTTGTTAA 59.178 43.478 1.93 0.00 44.69 2.01
1797 1957 3.073356 AGGAACCTTCATTCGGGTTGTTA 59.927 43.478 1.93 0.00 44.69 2.41
1798 1958 2.158519 AGGAACCTTCATTCGGGTTGTT 60.159 45.455 1.93 0.00 44.69 2.83
1799 1959 1.423921 AGGAACCTTCATTCGGGTTGT 59.576 47.619 1.93 0.00 44.69 3.32
1800 1960 2.200373 AGGAACCTTCATTCGGGTTG 57.800 50.000 1.93 0.00 44.69 3.77
1801 1961 2.971901 AAGGAACCTTCATTCGGGTT 57.028 45.000 0.00 0.00 46.97 4.11
1802 1962 3.521937 TCATAAGGAACCTTCATTCGGGT 59.478 43.478 9.50 0.00 37.47 5.28
1803 1963 3.877508 GTCATAAGGAACCTTCATTCGGG 59.122 47.826 9.50 0.00 37.47 5.14
1804 1964 4.572389 CAGTCATAAGGAACCTTCATTCGG 59.428 45.833 9.50 0.00 37.47 4.30
1805 1965 5.419542 TCAGTCATAAGGAACCTTCATTCG 58.580 41.667 9.50 0.00 37.47 3.34
1806 1966 7.226325 CAGATCAGTCATAAGGAACCTTCATTC 59.774 40.741 9.50 1.07 37.47 2.67
1807 1967 7.052873 CAGATCAGTCATAAGGAACCTTCATT 58.947 38.462 9.50 0.00 37.47 2.57
1808 1968 6.385176 TCAGATCAGTCATAAGGAACCTTCAT 59.615 38.462 9.50 0.59 37.47 2.57
1809 1969 5.721480 TCAGATCAGTCATAAGGAACCTTCA 59.279 40.000 9.50 0.00 37.47 3.02
1810 1970 6.227298 TCAGATCAGTCATAAGGAACCTTC 57.773 41.667 9.50 0.00 37.47 3.46
1811 1971 6.821616 ATCAGATCAGTCATAAGGAACCTT 57.178 37.500 10.97 10.97 39.83 3.50
1812 1972 7.202047 GGTTATCAGATCAGTCATAAGGAACCT 60.202 40.741 0.00 0.00 0.00 3.50
1813 1973 6.931840 GGTTATCAGATCAGTCATAAGGAACC 59.068 42.308 0.00 0.00 0.00 3.62
1814 1974 7.500992 TGGTTATCAGATCAGTCATAAGGAAC 58.499 38.462 0.00 0.00 0.00 3.62
1815 1975 7.565029 TCTGGTTATCAGATCAGTCATAAGGAA 59.435 37.037 0.00 0.00 46.71 3.36
1816 1976 7.069344 TCTGGTTATCAGATCAGTCATAAGGA 58.931 38.462 0.00 0.00 46.71 3.36
1817 1977 7.295322 TCTGGTTATCAGATCAGTCATAAGG 57.705 40.000 0.00 0.00 46.71 2.69
1830 1990 6.293190 CGACTCTAGCTACTTCTGGTTATCAG 60.293 46.154 0.00 0.00 44.68 2.90
1831 1991 5.527951 CGACTCTAGCTACTTCTGGTTATCA 59.472 44.000 0.00 0.00 0.00 2.15
1832 1992 5.049267 CCGACTCTAGCTACTTCTGGTTATC 60.049 48.000 0.00 0.00 0.00 1.75
1833 1993 4.822896 CCGACTCTAGCTACTTCTGGTTAT 59.177 45.833 0.00 0.00 0.00 1.89
1834 1994 4.197750 CCGACTCTAGCTACTTCTGGTTA 58.802 47.826 0.00 0.00 0.00 2.85
1835 1995 3.018149 CCGACTCTAGCTACTTCTGGTT 58.982 50.000 0.00 0.00 0.00 3.67
1836 1996 2.026075 ACCGACTCTAGCTACTTCTGGT 60.026 50.000 0.00 0.00 0.00 4.00
1837 1997 2.645802 ACCGACTCTAGCTACTTCTGG 58.354 52.381 0.00 0.00 0.00 3.86
1838 1998 3.249080 GCTACCGACTCTAGCTACTTCTG 59.751 52.174 0.00 0.00 34.82 3.02
1839 1999 3.135167 AGCTACCGACTCTAGCTACTTCT 59.865 47.826 0.00 0.00 44.24 2.85
1840 2000 3.469739 AGCTACCGACTCTAGCTACTTC 58.530 50.000 0.00 0.00 44.24 3.01
1841 2001 3.564053 AGCTACCGACTCTAGCTACTT 57.436 47.619 0.00 0.00 44.24 2.24
1842 2002 4.634199 CTTAGCTACCGACTCTAGCTACT 58.366 47.826 6.65 0.00 45.42 2.57
1843 2003 3.187022 GCTTAGCTACCGACTCTAGCTAC 59.813 52.174 6.65 0.00 45.42 3.58
1844 2004 3.071312 AGCTTAGCTACCGACTCTAGCTA 59.929 47.826 4.30 3.53 44.24 3.32
1845 2005 2.158726 AGCTTAGCTACCGACTCTAGCT 60.159 50.000 4.30 6.50 46.95 3.32
1846 2006 2.223745 AGCTTAGCTACCGACTCTAGC 58.776 52.381 4.30 0.00 36.99 3.42
1847 2007 4.885413 TCTAGCTTAGCTACCGACTCTAG 58.115 47.826 10.21 0.00 40.44 2.43
1848 2008 4.800249 GCTCTAGCTTAGCTACCGACTCTA 60.800 50.000 10.21 0.00 40.44 2.43
1849 2009 3.735591 CTCTAGCTTAGCTACCGACTCT 58.264 50.000 10.21 0.00 40.44 3.24
1850 2010 2.224784 GCTCTAGCTTAGCTACCGACTC 59.775 54.545 10.21 0.00 40.44 3.36
1851 2011 2.223745 GCTCTAGCTTAGCTACCGACT 58.776 52.381 10.21 0.00 40.44 4.18
1852 2012 2.691984 GCTCTAGCTTAGCTACCGAC 57.308 55.000 10.21 0.00 40.44 4.79
1864 2024 1.407258 ACTGACCAATCGAGCTCTAGC 59.593 52.381 12.85 0.00 42.49 3.42
1865 2025 2.685388 TGACTGACCAATCGAGCTCTAG 59.315 50.000 12.85 0.00 0.00 2.43
1866 2026 2.723273 TGACTGACCAATCGAGCTCTA 58.277 47.619 12.85 0.00 0.00 2.43
1867 2027 1.550327 TGACTGACCAATCGAGCTCT 58.450 50.000 12.85 0.00 0.00 4.09
1868 2028 2.593346 ATGACTGACCAATCGAGCTC 57.407 50.000 2.73 2.73 0.00 4.09
1869 2029 2.736719 CGAATGACTGACCAATCGAGCT 60.737 50.000 0.00 0.00 40.72 4.09
1870 2030 1.590238 CGAATGACTGACCAATCGAGC 59.410 52.381 0.00 0.00 40.72 5.03
1871 2031 2.159240 TCCGAATGACTGACCAATCGAG 60.159 50.000 11.54 5.05 40.72 4.04
1872 2032 1.822371 TCCGAATGACTGACCAATCGA 59.178 47.619 11.54 0.00 40.72 3.59
1873 2033 1.927174 GTCCGAATGACTGACCAATCG 59.073 52.381 0.00 0.00 41.03 3.34
1874 2034 2.673368 GTGTCCGAATGACTGACCAATC 59.327 50.000 0.00 0.00 44.75 2.67
1875 2035 2.699954 GTGTCCGAATGACTGACCAAT 58.300 47.619 0.00 0.00 44.75 3.16
1876 2036 1.604438 CGTGTCCGAATGACTGACCAA 60.604 52.381 0.00 0.00 44.75 3.67
1877 2037 0.038618 CGTGTCCGAATGACTGACCA 60.039 55.000 0.00 0.00 44.75 4.02
1878 2038 0.736325 CCGTGTCCGAATGACTGACC 60.736 60.000 0.00 0.00 44.75 4.02
1903 2063 4.839121 ACAGTCTGCCGTATAATTTTGGA 58.161 39.130 0.00 0.00 0.00 3.53
1904 2064 5.815740 AGTACAGTCTGCCGTATAATTTTGG 59.184 40.000 0.00 0.00 0.00 3.28
1910 2070 3.129813 CACCAGTACAGTCTGCCGTATAA 59.870 47.826 0.00 0.00 34.47 0.98
1911 2071 2.686405 CACCAGTACAGTCTGCCGTATA 59.314 50.000 0.00 0.00 34.47 1.47
1933 2093 8.400947 CAAACCATTGACATTTATCAGGTAGAG 58.599 37.037 0.00 0.00 38.94 2.43
1934 2094 7.888021 ACAAACCATTGACATTTATCAGGTAGA 59.112 33.333 0.00 0.00 38.94 2.59
1936 2098 7.888021 AGACAAACCATTGACATTTATCAGGTA 59.112 33.333 0.00 0.00 38.94 3.08
1937 2099 6.721208 AGACAAACCATTGACATTTATCAGGT 59.279 34.615 0.00 0.00 38.94 4.00
1938 2100 7.161773 AGACAAACCATTGACATTTATCAGG 57.838 36.000 0.00 0.00 38.94 3.86
1966 2128 4.116747 TGCGACCACAAATTTGACTTTT 57.883 36.364 24.64 0.00 0.00 2.27
1967 2129 3.791973 TGCGACCACAAATTTGACTTT 57.208 38.095 24.64 5.70 0.00 2.66
1968 2130 3.641648 CATGCGACCACAAATTTGACTT 58.358 40.909 24.64 7.46 0.00 3.01
1969 2131 2.607771 GCATGCGACCACAAATTTGACT 60.608 45.455 24.64 6.00 0.00 3.41
1970 2132 1.720852 GCATGCGACCACAAATTTGAC 59.279 47.619 24.64 11.13 0.00 3.18
1971 2133 1.339291 TGCATGCGACCACAAATTTGA 59.661 42.857 24.64 0.36 0.00 2.69
1972 2134 1.722464 CTGCATGCGACCACAAATTTG 59.278 47.619 16.67 16.67 0.00 2.32
1973 2135 1.936203 GCTGCATGCGACCACAAATTT 60.936 47.619 14.09 0.00 0.00 1.82
1974 2136 0.388907 GCTGCATGCGACCACAAATT 60.389 50.000 14.09 0.00 0.00 1.82
1975 2137 1.213537 GCTGCATGCGACCACAAAT 59.786 52.632 14.09 0.00 0.00 2.32
1976 2138 2.192187 TGCTGCATGCGACCACAAA 61.192 52.632 14.09 0.00 46.63 2.83
1977 2139 2.594013 TGCTGCATGCGACCACAA 60.594 55.556 14.09 0.00 46.63 3.33
1978 2140 3.356267 GTGCTGCATGCGACCACA 61.356 61.111 22.41 10.79 46.63 4.17
1979 2141 4.450122 CGTGCTGCATGCGACCAC 62.450 66.667 14.09 17.32 46.63 4.16
2034 2196 2.048127 ACGTTCAGGCTCGCCTTC 60.048 61.111 7.93 1.46 45.70 3.46
2155 2317 1.730501 CAGAGCATGTGTGGTACCTG 58.269 55.000 14.36 3.40 35.91 4.00
2156 2318 0.036010 GCAGAGCATGTGTGGTACCT 60.036 55.000 14.36 0.00 35.91 3.08
2157 2319 0.036010 AGCAGAGCATGTGTGGTACC 60.036 55.000 4.43 4.43 35.91 3.34
2158 2320 1.066573 AGAGCAGAGCATGTGTGGTAC 60.067 52.381 0.00 0.00 35.91 3.34
2159 2321 1.269958 AGAGCAGAGCATGTGTGGTA 58.730 50.000 0.00 0.00 35.91 3.25
2160 2322 1.066573 GTAGAGCAGAGCATGTGTGGT 60.067 52.381 0.00 0.00 39.13 4.16
2161 2323 1.066645 TGTAGAGCAGAGCATGTGTGG 60.067 52.381 0.00 0.00 0.00 4.17
2162 2324 2.375173 TGTAGAGCAGAGCATGTGTG 57.625 50.000 0.00 0.00 0.00 3.82
2175 2337 2.992543 GTTGCTGACTTGCTCTGTAGAG 59.007 50.000 4.53 4.53 44.75 2.43
2176 2338 2.365293 TGTTGCTGACTTGCTCTGTAGA 59.635 45.455 0.00 0.00 0.00 2.59
2177 2339 2.478134 GTGTTGCTGACTTGCTCTGTAG 59.522 50.000 0.00 0.00 0.00 2.74
2178 2340 2.158971 TGTGTTGCTGACTTGCTCTGTA 60.159 45.455 0.00 0.00 0.00 2.74
2179 2341 1.303309 GTGTTGCTGACTTGCTCTGT 58.697 50.000 0.00 0.00 0.00 3.41
2180 2342 1.302366 TGTGTTGCTGACTTGCTCTG 58.698 50.000 0.00 0.00 0.00 3.35
2181 2343 1.878088 CATGTGTTGCTGACTTGCTCT 59.122 47.619 0.00 0.00 0.00 4.09
2182 2344 2.327081 CATGTGTTGCTGACTTGCTC 57.673 50.000 0.00 0.00 0.00 4.26
2193 2355 6.148315 TCAGAAGATTACAAGAGCATGTGTTG 59.852 38.462 0.00 0.00 35.49 3.33
2194 2356 6.233434 TCAGAAGATTACAAGAGCATGTGTT 58.767 36.000 0.00 0.00 34.75 3.32
2195 2357 5.798132 TCAGAAGATTACAAGAGCATGTGT 58.202 37.500 0.00 0.00 34.75 3.72
2196 2358 6.732531 TTCAGAAGATTACAAGAGCATGTG 57.267 37.500 0.00 0.00 34.75 3.21
2197 2359 7.497249 GGTATTCAGAAGATTACAAGAGCATGT 59.503 37.037 0.00 0.00 34.06 3.21
2198 2360 7.496920 TGGTATTCAGAAGATTACAAGAGCATG 59.503 37.037 0.00 0.00 34.06 4.06
2199 2361 7.497249 GTGGTATTCAGAAGATTACAAGAGCAT 59.503 37.037 0.00 0.00 34.06 3.79
2200 2362 6.818644 GTGGTATTCAGAAGATTACAAGAGCA 59.181 38.462 0.00 0.00 34.06 4.26
2201 2363 7.044798 AGTGGTATTCAGAAGATTACAAGAGC 58.955 38.462 0.00 0.00 34.06 4.09
2211 2373 9.647918 AGATACAGATTAGTGGTATTCAGAAGA 57.352 33.333 0.00 0.00 0.00 2.87
2212 2374 9.906660 GAGATACAGATTAGTGGTATTCAGAAG 57.093 37.037 0.00 0.00 0.00 2.85
2213 2375 8.861086 GGAGATACAGATTAGTGGTATTCAGAA 58.139 37.037 0.00 0.00 0.00 3.02
2214 2376 7.451877 GGGAGATACAGATTAGTGGTATTCAGA 59.548 40.741 0.00 0.00 0.00 3.27
2215 2377 7.453126 AGGGAGATACAGATTAGTGGTATTCAG 59.547 40.741 0.00 0.00 0.00 3.02
2216 2378 7.306013 AGGGAGATACAGATTAGTGGTATTCA 58.694 38.462 0.00 0.00 0.00 2.57
2217 2379 7.672239 AGAGGGAGATACAGATTAGTGGTATTC 59.328 40.741 0.00 0.00 0.00 1.75
2218 2380 7.540183 AGAGGGAGATACAGATTAGTGGTATT 58.460 38.462 0.00 0.00 0.00 1.89
2219 2381 7.109901 AGAGGGAGATACAGATTAGTGGTAT 57.890 40.000 0.00 0.00 0.00 2.73
2220 2382 6.532119 AGAGGGAGATACAGATTAGTGGTA 57.468 41.667 0.00 0.00 0.00 3.25
2221 2383 5.411103 AGAGGGAGATACAGATTAGTGGT 57.589 43.478 0.00 0.00 0.00 4.16
2222 2384 5.600484 ACAAGAGGGAGATACAGATTAGTGG 59.400 44.000 0.00 0.00 0.00 4.00
2223 2385 6.322456 TGACAAGAGGGAGATACAGATTAGTG 59.678 42.308 0.00 0.00 0.00 2.74
2224 2386 6.436027 TGACAAGAGGGAGATACAGATTAGT 58.564 40.000 0.00 0.00 0.00 2.24
2225 2387 6.968263 TGACAAGAGGGAGATACAGATTAG 57.032 41.667 0.00 0.00 0.00 1.73
2226 2388 7.921041 AATGACAAGAGGGAGATACAGATTA 57.079 36.000 0.00 0.00 0.00 1.75
2227 2389 6.821616 AATGACAAGAGGGAGATACAGATT 57.178 37.500 0.00 0.00 0.00 2.40
2228 2390 6.821616 AAATGACAAGAGGGAGATACAGAT 57.178 37.500 0.00 0.00 0.00 2.90
2229 2391 6.627087 AAAATGACAAGAGGGAGATACAGA 57.373 37.500 0.00 0.00 0.00 3.41
2230 2392 6.763610 GGTAAAATGACAAGAGGGAGATACAG 59.236 42.308 0.00 0.00 0.00 2.74
2231 2393 6.443849 AGGTAAAATGACAAGAGGGAGATACA 59.556 38.462 0.00 0.00 0.00 2.29
2232 2394 6.890293 AGGTAAAATGACAAGAGGGAGATAC 58.110 40.000 0.00 0.00 0.00 2.24
2233 2395 7.182026 TGAAGGTAAAATGACAAGAGGGAGATA 59.818 37.037 0.00 0.00 0.00 1.98
2234 2396 6.012508 TGAAGGTAAAATGACAAGAGGGAGAT 60.013 38.462 0.00 0.00 0.00 2.75
2235 2397 5.309543 TGAAGGTAAAATGACAAGAGGGAGA 59.690 40.000 0.00 0.00 0.00 3.71
2236 2398 5.560724 TGAAGGTAAAATGACAAGAGGGAG 58.439 41.667 0.00 0.00 0.00 4.30
2237 2399 5.576563 TGAAGGTAAAATGACAAGAGGGA 57.423 39.130 0.00 0.00 0.00 4.20
2238 2400 6.434028 TGAATGAAGGTAAAATGACAAGAGGG 59.566 38.462 0.00 0.00 0.00 4.30
2239 2401 7.362401 CCTGAATGAAGGTAAAATGACAAGAGG 60.362 40.741 0.00 0.00 32.17 3.69
2240 2402 7.533426 CCTGAATGAAGGTAAAATGACAAGAG 58.467 38.462 0.00 0.00 32.17 2.85
2241 2403 7.452880 CCTGAATGAAGGTAAAATGACAAGA 57.547 36.000 0.00 0.00 32.17 3.02
2254 2416 3.181526 GGGCTCACCTGAATGAAGG 57.818 57.895 0.00 0.00 43.57 3.46
2327 2589 5.801380 ACGACATCATTTGGTAAGGTTAGT 58.199 37.500 0.00 0.00 0.00 2.24
2332 2594 3.190327 TGCAACGACATCATTTGGTAAGG 59.810 43.478 0.00 0.00 0.00 2.69
2334 2596 4.837896 TTGCAACGACATCATTTGGTAA 57.162 36.364 0.00 0.00 0.00 2.85
2335 2597 4.277174 ACTTTGCAACGACATCATTTGGTA 59.723 37.500 10.27 0.00 0.00 3.25
2338 2600 5.459762 AGAAACTTTGCAACGACATCATTTG 59.540 36.000 10.27 0.00 0.00 2.32
2341 2603 4.275689 TGAGAAACTTTGCAACGACATCAT 59.724 37.500 10.27 0.00 0.00 2.45
2343 2605 4.209452 TGAGAAACTTTGCAACGACATC 57.791 40.909 10.27 4.86 0.00 3.06
2345 2607 3.006940 ACTGAGAAACTTTGCAACGACA 58.993 40.909 10.27 1.70 0.00 4.35
2346 2608 3.181510 ACACTGAGAAACTTTGCAACGAC 60.182 43.478 10.27 1.28 0.00 4.34
2347 2609 3.006940 ACACTGAGAAACTTTGCAACGA 58.993 40.909 10.27 0.00 0.00 3.85
2348 2610 3.405170 ACACTGAGAAACTTTGCAACG 57.595 42.857 0.00 0.00 0.00 4.10
2352 2614 3.546218 GGACGAACACTGAGAAACTTTGC 60.546 47.826 0.00 0.00 0.00 3.68
2355 2617 3.536956 TGGACGAACACTGAGAAACTT 57.463 42.857 0.00 0.00 0.00 2.66
2356 2618 3.069586 TCATGGACGAACACTGAGAAACT 59.930 43.478 0.00 0.00 0.00 2.66
2357 2619 3.390135 TCATGGACGAACACTGAGAAAC 58.610 45.455 0.00 0.00 0.00 2.78
2359 2621 3.744238 TTCATGGACGAACACTGAGAA 57.256 42.857 0.00 0.00 0.00 2.87
2363 2625 3.559655 TGACTTTTCATGGACGAACACTG 59.440 43.478 0.00 0.00 0.00 3.66
2382 2644 9.803315 ACAAGAATTTAACCTTCTTTTCTTGAC 57.197 29.630 22.77 0.00 46.51 3.18
2417 2680 0.998669 CGTTCTGCATCGCACACATA 59.001 50.000 0.00 0.00 33.79 2.29
2422 2685 2.391821 CGTCGTTCTGCATCGCAC 59.608 61.111 0.00 0.00 33.79 5.34
2573 2842 0.777446 CCTTCTTGGGGTCCTTCCAA 59.223 55.000 0.24 0.24 41.50 3.53
3100 3471 9.565213 CATTTTTGTTAAATTGGAGTGCAAAAA 57.435 25.926 0.00 12.49 43.54 1.94
3101 3472 7.699812 GCATTTTTGTTAAATTGGAGTGCAAAA 59.300 29.630 0.00 0.00 34.09 2.44
3102 3473 7.066766 AGCATTTTTGTTAAATTGGAGTGCAAA 59.933 29.630 0.00 0.00 0.00 3.68
3103 3474 6.541641 AGCATTTTTGTTAAATTGGAGTGCAA 59.458 30.769 0.00 0.00 0.00 4.08
3104 3475 6.054295 AGCATTTTTGTTAAATTGGAGTGCA 58.946 32.000 0.00 0.00 0.00 4.57
3105 3476 6.544038 AGCATTTTTGTTAAATTGGAGTGC 57.456 33.333 0.00 0.00 0.00 4.40
3106 3477 8.487176 GTGTAGCATTTTTGTTAAATTGGAGTG 58.513 33.333 0.00 0.00 0.00 3.51
3107 3478 8.421002 AGTGTAGCATTTTTGTTAAATTGGAGT 58.579 29.630 0.00 0.00 0.00 3.85
3108 3479 8.702438 CAGTGTAGCATTTTTGTTAAATTGGAG 58.298 33.333 0.00 0.00 0.00 3.86
3109 3480 8.417106 TCAGTGTAGCATTTTTGTTAAATTGGA 58.583 29.630 0.00 0.00 0.00 3.53
3110 3481 8.586570 TCAGTGTAGCATTTTTGTTAAATTGG 57.413 30.769 0.00 0.00 0.00 3.16
3111 3482 8.702438 CCTCAGTGTAGCATTTTTGTTAAATTG 58.298 33.333 0.00 0.00 0.00 2.32
3112 3483 8.421002 ACCTCAGTGTAGCATTTTTGTTAAATT 58.579 29.630 0.00 0.00 0.00 1.82
3113 3484 7.951591 ACCTCAGTGTAGCATTTTTGTTAAAT 58.048 30.769 0.00 0.00 0.00 1.40
3114 3485 7.341445 ACCTCAGTGTAGCATTTTTGTTAAA 57.659 32.000 0.00 0.00 0.00 1.52
3115 3486 6.952773 ACCTCAGTGTAGCATTTTTGTTAA 57.047 33.333 0.00 0.00 0.00 2.01
3116 3487 7.717875 ACTTACCTCAGTGTAGCATTTTTGTTA 59.282 33.333 0.00 0.00 0.00 2.41
3117 3488 6.546034 ACTTACCTCAGTGTAGCATTTTTGTT 59.454 34.615 0.00 0.00 0.00 2.83
3118 3489 6.062095 ACTTACCTCAGTGTAGCATTTTTGT 58.938 36.000 0.00 0.00 0.00 2.83
3119 3490 6.560253 ACTTACCTCAGTGTAGCATTTTTG 57.440 37.500 0.00 0.00 0.00 2.44
3120 3491 7.095355 CGTAACTTACCTCAGTGTAGCATTTTT 60.095 37.037 0.00 0.00 0.00 1.94
3121 3492 6.367969 CGTAACTTACCTCAGTGTAGCATTTT 59.632 38.462 0.00 0.00 0.00 1.82
3122 3493 5.867716 CGTAACTTACCTCAGTGTAGCATTT 59.132 40.000 0.00 0.00 0.00 2.32
3123 3494 5.047519 ACGTAACTTACCTCAGTGTAGCATT 60.048 40.000 0.00 0.00 0.00 3.56
3124 3495 4.461781 ACGTAACTTACCTCAGTGTAGCAT 59.538 41.667 0.00 0.00 0.00 3.79
3125 3496 3.822735 ACGTAACTTACCTCAGTGTAGCA 59.177 43.478 0.00 0.00 0.00 3.49
3126 3497 4.431661 ACGTAACTTACCTCAGTGTAGC 57.568 45.455 0.00 0.00 0.00 3.58
3127 3498 6.251655 AGAACGTAACTTACCTCAGTGTAG 57.748 41.667 0.00 0.00 0.00 2.74
3128 3499 5.182001 GGAGAACGTAACTTACCTCAGTGTA 59.818 44.000 0.00 0.00 0.00 2.90
3129 3500 4.022503 GGAGAACGTAACTTACCTCAGTGT 60.023 45.833 0.00 0.00 0.00 3.55
3130 3501 4.217983 AGGAGAACGTAACTTACCTCAGTG 59.782 45.833 0.00 0.00 0.00 3.66
3131 3502 4.405548 AGGAGAACGTAACTTACCTCAGT 58.594 43.478 0.00 0.00 0.00 3.41
3132 3503 4.701171 AGAGGAGAACGTAACTTACCTCAG 59.299 45.833 21.20 0.00 43.06 3.35
3133 3504 4.660168 AGAGGAGAACGTAACTTACCTCA 58.340 43.478 21.20 0.00 43.06 3.86
3134 3505 5.641783 AAGAGGAGAACGTAACTTACCTC 57.358 43.478 15.94 15.94 41.58 3.85
3135 3506 6.662663 ACATAAGAGGAGAACGTAACTTACCT 59.337 38.462 0.00 0.00 0.00 3.08
3136 3507 6.861144 ACATAAGAGGAGAACGTAACTTACC 58.139 40.000 0.00 0.00 0.00 2.85
3137 3508 9.283420 GTTACATAAGAGGAGAACGTAACTTAC 57.717 37.037 0.00 0.00 36.13 2.34
3138 3509 8.462016 GGTTACATAAGAGGAGAACGTAACTTA 58.538 37.037 0.00 0.00 38.07 2.24
3139 3510 7.178097 AGGTTACATAAGAGGAGAACGTAACTT 59.822 37.037 0.00 0.00 38.07 2.66
3140 3511 6.662663 AGGTTACATAAGAGGAGAACGTAACT 59.337 38.462 0.00 0.00 38.07 2.24
3141 3512 6.861144 AGGTTACATAAGAGGAGAACGTAAC 58.139 40.000 0.00 0.00 37.54 2.50
3142 3513 7.395489 AGAAGGTTACATAAGAGGAGAACGTAA 59.605 37.037 0.00 0.00 0.00 3.18
3143 3514 6.888632 AGAAGGTTACATAAGAGGAGAACGTA 59.111 38.462 0.00 0.00 0.00 3.57
3144 3515 5.715753 AGAAGGTTACATAAGAGGAGAACGT 59.284 40.000 0.00 0.00 0.00 3.99
3145 3516 6.210287 AGAAGGTTACATAAGAGGAGAACG 57.790 41.667 0.00 0.00 0.00 3.95
3157 3528 9.802039 TGAAGTGGTTTATTAAGAAGGTTACAT 57.198 29.630 0.00 0.00 0.00 2.29
3158 3529 9.802039 ATGAAGTGGTTTATTAAGAAGGTTACA 57.198 29.630 0.00 0.00 0.00 2.41
3160 3531 9.457436 GGATGAAGTGGTTTATTAAGAAGGTTA 57.543 33.333 0.00 0.00 0.00 2.85
3161 3532 7.396339 GGGATGAAGTGGTTTATTAAGAAGGTT 59.604 37.037 0.00 0.00 0.00 3.50
3162 3533 6.890268 GGGATGAAGTGGTTTATTAAGAAGGT 59.110 38.462 0.00 0.00 0.00 3.50
3163 3534 6.321435 GGGGATGAAGTGGTTTATTAAGAAGG 59.679 42.308 0.00 0.00 0.00 3.46
3164 3535 7.067494 CAGGGGATGAAGTGGTTTATTAAGAAG 59.933 40.741 0.00 0.00 0.00 2.85
3165 3536 6.889722 CAGGGGATGAAGTGGTTTATTAAGAA 59.110 38.462 0.00 0.00 0.00 2.52
3166 3537 6.216662 TCAGGGGATGAAGTGGTTTATTAAGA 59.783 38.462 0.00 0.00 34.02 2.10
3167 3538 6.423182 TCAGGGGATGAAGTGGTTTATTAAG 58.577 40.000 0.00 0.00 34.02 1.85
3168 3539 6.395780 TCAGGGGATGAAGTGGTTTATTAA 57.604 37.500 0.00 0.00 34.02 1.40
3169 3540 6.590656 ATCAGGGGATGAAGTGGTTTATTA 57.409 37.500 0.00 0.00 42.53 0.98
3170 3541 4.946160 TCAGGGGATGAAGTGGTTTATT 57.054 40.909 0.00 0.00 34.02 1.40
3171 3542 5.472301 AATCAGGGGATGAAGTGGTTTAT 57.528 39.130 0.00 0.00 42.53 1.40
3172 3543 4.946160 AATCAGGGGATGAAGTGGTTTA 57.054 40.909 0.00 0.00 42.53 2.01
3173 3544 3.833559 AATCAGGGGATGAAGTGGTTT 57.166 42.857 0.00 0.00 42.53 3.27
3174 3545 3.075882 TGAAATCAGGGGATGAAGTGGTT 59.924 43.478 0.00 0.00 42.53 3.67
3175 3546 2.649312 TGAAATCAGGGGATGAAGTGGT 59.351 45.455 0.00 0.00 42.53 4.16
3176 3547 3.370840 TGAAATCAGGGGATGAAGTGG 57.629 47.619 0.00 0.00 42.53 4.00
3177 3548 4.157289 CACTTGAAATCAGGGGATGAAGTG 59.843 45.833 0.00 0.00 42.53 3.16
3178 3549 4.338879 CACTTGAAATCAGGGGATGAAGT 58.661 43.478 0.00 0.00 42.53 3.01
3179 3550 3.698040 CCACTTGAAATCAGGGGATGAAG 59.302 47.826 0.00 0.00 42.53 3.02
3180 3551 3.564133 CCCACTTGAAATCAGGGGATGAA 60.564 47.826 9.90 0.00 42.53 2.57
3181 3552 2.025037 CCCACTTGAAATCAGGGGATGA 60.025 50.000 9.90 0.00 43.70 2.92
3182 3553 2.381911 CCCACTTGAAATCAGGGGATG 58.618 52.381 9.90 0.00 36.34 3.51
3183 3554 1.342374 GCCCACTTGAAATCAGGGGAT 60.342 52.381 16.49 0.00 39.96 3.85
3184 3555 0.039618 GCCCACTTGAAATCAGGGGA 59.960 55.000 16.49 0.00 39.96 4.81
3185 3556 1.315257 CGCCCACTTGAAATCAGGGG 61.315 60.000 7.97 9.43 39.96 4.79
3186 3557 1.315257 CCGCCCACTTGAAATCAGGG 61.315 60.000 2.60 2.60 42.55 4.45
3187 3558 1.315257 CCCGCCCACTTGAAATCAGG 61.315 60.000 0.00 0.00 0.00 3.86
3188 3559 1.937546 GCCCGCCCACTTGAAATCAG 61.938 60.000 0.00 0.00 0.00 2.90
3189 3560 1.976474 GCCCGCCCACTTGAAATCA 60.976 57.895 0.00 0.00 0.00 2.57
3190 3561 2.710902 GGCCCGCCCACTTGAAATC 61.711 63.158 0.00 0.00 0.00 2.17
3191 3562 2.679996 GGCCCGCCCACTTGAAAT 60.680 61.111 0.00 0.00 0.00 2.17
3202 3573 1.411651 ATTAGAAGAGAGGGGCCCGC 61.412 60.000 19.88 19.88 0.00 6.13
3203 3574 1.070914 GAATTAGAAGAGAGGGGCCCG 59.929 57.143 18.95 0.00 0.00 6.13
3204 3575 2.127708 TGAATTAGAAGAGAGGGGCCC 58.872 52.381 17.12 17.12 0.00 5.80
3205 3576 3.244735 GGATGAATTAGAAGAGAGGGGCC 60.245 52.174 0.00 0.00 0.00 5.80
3206 3577 3.392616 TGGATGAATTAGAAGAGAGGGGC 59.607 47.826 0.00 0.00 0.00 5.80
3207 3578 5.636903 TTGGATGAATTAGAAGAGAGGGG 57.363 43.478 0.00 0.00 0.00 4.79
3208 3579 8.200024 TCTATTGGATGAATTAGAAGAGAGGG 57.800 38.462 0.00 0.00 0.00 4.30
3213 3584 9.109393 CCGTTTTCTATTGGATGAATTAGAAGA 57.891 33.333 0.00 0.00 0.00 2.87
3214 3585 9.109393 TCCGTTTTCTATTGGATGAATTAGAAG 57.891 33.333 0.00 0.00 0.00 2.85
3215 3586 8.889717 GTCCGTTTTCTATTGGATGAATTAGAA 58.110 33.333 0.00 0.00 32.18 2.10
3216 3587 8.044309 TGTCCGTTTTCTATTGGATGAATTAGA 58.956 33.333 0.00 0.00 32.18 2.10
3217 3588 8.208718 TGTCCGTTTTCTATTGGATGAATTAG 57.791 34.615 0.00 0.00 32.18 1.73
3218 3589 8.455682 GTTGTCCGTTTTCTATTGGATGAATTA 58.544 33.333 0.00 0.00 32.18 1.40
3219 3590 7.312899 GTTGTCCGTTTTCTATTGGATGAATT 58.687 34.615 0.00 0.00 32.18 2.17
3220 3591 6.403200 CGTTGTCCGTTTTCTATTGGATGAAT 60.403 38.462 0.00 0.00 32.18 2.57
3221 3592 5.106869 CGTTGTCCGTTTTCTATTGGATGAA 60.107 40.000 0.00 0.00 32.18 2.57
3222 3593 4.390603 CGTTGTCCGTTTTCTATTGGATGA 59.609 41.667 0.00 0.00 32.18 2.92
3223 3594 4.647964 CGTTGTCCGTTTTCTATTGGATG 58.352 43.478 0.00 0.00 32.18 3.51
3237 3608 0.582960 GTGGGTGTTAACGTTGTCCG 59.417 55.000 11.99 0.00 44.03 4.79
3261 3632 1.541379 GCGGGTTTAACTTCCACCAT 58.459 50.000 0.00 0.00 31.50 3.55
3268 3639 1.167781 CGTGTGGGCGGGTTTAACTT 61.168 55.000 0.00 0.00 0.00 2.66
3272 3643 2.030862 GACGTGTGGGCGGGTTTA 59.969 61.111 0.00 0.00 35.98 2.01
3300 3671 1.447140 GGTGACGTGGCGCAATCTA 60.447 57.895 10.83 0.00 0.00 1.98
3498 3978 4.684877 TCATGGCAATTCATGTGCAATAC 58.315 39.130 8.81 0.00 44.07 1.89
3537 4017 2.779755 TAGCCGAAACATGTCATGGT 57.220 45.000 17.08 7.75 33.60 3.55
3544 4024 7.072177 TGTAGAAGAAAATAGCCGAAACATG 57.928 36.000 0.00 0.00 0.00 3.21
3654 4185 8.354711 TGAACCATGGCAATTTTAAGTGTATA 57.645 30.769 13.04 0.00 0.00 1.47
3657 4188 5.543507 TGAACCATGGCAATTTTAAGTGT 57.456 34.783 13.04 0.00 0.00 3.55
3771 4303 8.896320 TGTCATAGTGCTTAAACTAAAGTTGA 57.104 30.769 0.00 0.00 38.44 3.18
3797 4395 3.689161 TGCCATGATGTTTACACTGTAGC 59.311 43.478 0.00 0.00 0.00 3.58
3848 4447 9.003658 CAAAACTAGACCCCATATTGATATGTC 57.996 37.037 0.00 2.44 38.73 3.06
3888 4577 6.503589 TCGGTTTTCATCATTAAATCCGTT 57.496 33.333 11.74 0.00 44.13 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.