Multiple sequence alignment - TraesCS1B01G129800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G129800 chr1B 100.000 3381 0 0 1 3381 160311019 160307639 0.000000e+00 6244.0
1 TraesCS1B01G129800 chr1B 97.161 317 5 3 1 314 268591847 268592162 1.790000e-147 532.0
2 TraesCS1B01G129800 chr1B 95.455 308 13 1 2 308 528395445 528395752 1.090000e-134 490.0
3 TraesCS1B01G129800 chr1B 94.534 311 15 2 1 310 265969544 265969853 2.360000e-131 479.0
4 TraesCS1B01G129800 chr1D 92.051 2038 94 34 454 2464 106846749 106848745 0.000000e+00 2804.0
5 TraesCS1B01G129800 chr1D 88.759 943 67 15 2448 3381 106848901 106849813 0.000000e+00 1118.0
6 TraesCS1B01G129800 chr1A 88.875 2337 123 49 293 2554 106218696 106216422 0.000000e+00 2748.0
7 TraesCS1B01G129800 chr1A 89.163 406 27 5 2628 3030 106216086 106215695 1.090000e-134 490.0
8 TraesCS1B01G129800 chr1A 88.401 319 36 1 3029 3347 106207047 106206730 1.900000e-102 383.0
9 TraesCS1B01G129800 chr1A 73.256 258 59 10 2787 3040 216413182 216413433 6.010000e-13 86.1
10 TraesCS1B01G129800 chr6B 97.742 310 6 1 1 309 150153775 150153466 1.790000e-147 532.0
11 TraesCS1B01G129800 chr4B 97.419 310 6 2 1 309 404872392 404872084 8.310000e-146 527.0
12 TraesCS1B01G129800 chr4B 97.712 306 6 1 1 305 72884816 72884511 2.990000e-145 525.0
13 TraesCS1B01G129800 chr4A 97.134 314 6 3 1 313 164536909 164537220 8.310000e-146 527.0
14 TraesCS1B01G129800 chr7B 96.774 310 8 2 1 309 607308270 607308578 1.800000e-142 516.0
15 TraesCS1B01G129800 chr3B 96.129 310 11 1 1 309 492608038 492607729 3.890000e-139 505.0
16 TraesCS1B01G129800 chr5D 82.639 432 64 8 2955 3381 225580875 225580450 4.120000e-99 372.0
17 TraesCS1B01G129800 chr2D 86.792 53 7 0 2615 2667 380693790 380693842 3.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G129800 chr1B 160307639 160311019 3380 True 6244 6244 100.000 1 3381 1 chr1B.!!$R1 3380
1 TraesCS1B01G129800 chr1D 106846749 106849813 3064 False 1961 2804 90.405 454 3381 2 chr1D.!!$F1 2927
2 TraesCS1B01G129800 chr1A 106215695 106218696 3001 True 1619 2748 89.019 293 3030 2 chr1A.!!$R2 2737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.034574 TAATTGCCAGGCCGTGATGT 60.035 50.0 9.64 0.0 0.00 3.06 F
355 356 0.038251 TGCTGTGTAGACCTTGAGCG 60.038 55.0 0.00 0.0 0.00 5.03 F
826 860 0.039346 TTTCGGACACGTGCGTATCA 60.039 50.0 17.22 0.0 44.84 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1162 1207 0.693049 GAGCTTCTTGTTCCTCCCCA 59.307 55.000 0.00 0.0 0.00 4.96 R
1296 1341 1.002888 TGAAGCAGAGGAAAGAGCAGG 59.997 52.381 0.00 0.0 0.00 4.85 R
2605 2865 0.179134 GGAGGTGAATCACGGACTCG 60.179 60.000 7.35 0.0 43.02 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.156736 GACATGACGAACCCCAACAG 58.843 55.000 0.00 0.00 0.00 3.16
21 22 0.250727 ACATGACGAACCCCAACAGG 60.251 55.000 0.00 0.00 0.00 4.00
22 23 1.303317 ATGACGAACCCCAACAGGC 60.303 57.895 0.00 0.00 0.00 4.85
23 24 3.047877 GACGAACCCCAACAGGCG 61.048 66.667 0.00 0.00 0.00 5.52
24 25 3.524648 GACGAACCCCAACAGGCGA 62.525 63.158 0.00 0.00 0.00 5.54
25 26 2.742372 CGAACCCCAACAGGCGAG 60.742 66.667 0.00 0.00 0.00 5.03
26 27 3.056328 GAACCCCAACAGGCGAGC 61.056 66.667 0.00 0.00 0.00 5.03
27 28 3.553095 GAACCCCAACAGGCGAGCT 62.553 63.158 0.00 0.00 0.00 4.09
28 29 2.180159 GAACCCCAACAGGCGAGCTA 62.180 60.000 0.00 0.00 0.00 3.32
29 30 1.562672 AACCCCAACAGGCGAGCTAT 61.563 55.000 0.00 0.00 0.00 2.97
30 31 1.524621 CCCCAACAGGCGAGCTATG 60.525 63.158 0.00 0.00 0.00 2.23
31 32 1.524621 CCCAACAGGCGAGCTATGG 60.525 63.158 0.00 0.00 0.00 2.74
32 33 2.182842 CCAACAGGCGAGCTATGGC 61.183 63.158 4.00 4.00 39.06 4.40
37 38 4.321966 GGCGAGCTATGGCCTCCC 62.322 72.222 14.03 0.00 46.22 4.30
38 39 3.237741 GCGAGCTATGGCCTCCCT 61.238 66.667 3.32 0.00 39.73 4.20
39 40 3.055580 CGAGCTATGGCCTCCCTC 58.944 66.667 3.32 3.77 39.73 4.30
40 41 1.834378 CGAGCTATGGCCTCCCTCA 60.834 63.158 3.32 0.00 39.73 3.86
41 42 1.751563 GAGCTATGGCCTCCCTCAC 59.248 63.158 3.32 0.00 39.73 3.51
42 43 0.762461 GAGCTATGGCCTCCCTCACT 60.762 60.000 3.32 0.00 39.73 3.41
43 44 0.563173 AGCTATGGCCTCCCTCACTA 59.437 55.000 3.32 0.00 39.73 2.74
44 45 1.150986 AGCTATGGCCTCCCTCACTAT 59.849 52.381 3.32 0.00 39.73 2.12
45 46 1.277557 GCTATGGCCTCCCTCACTATG 59.722 57.143 3.32 0.00 0.00 2.23
46 47 1.277557 CTATGGCCTCCCTCACTATGC 59.722 57.143 3.32 0.00 0.00 3.14
47 48 0.401105 ATGGCCTCCCTCACTATGCT 60.401 55.000 3.32 0.00 0.00 3.79
48 49 0.621571 TGGCCTCCCTCACTATGCTT 60.622 55.000 3.32 0.00 0.00 3.91
49 50 0.179034 GGCCTCCCTCACTATGCTTG 60.179 60.000 0.00 0.00 0.00 4.01
50 51 0.543749 GCCTCCCTCACTATGCTTGT 59.456 55.000 0.00 0.00 0.00 3.16
51 52 1.474143 GCCTCCCTCACTATGCTTGTC 60.474 57.143 0.00 0.00 0.00 3.18
52 53 2.114616 CCTCCCTCACTATGCTTGTCT 58.885 52.381 0.00 0.00 0.00 3.41
53 54 2.102252 CCTCCCTCACTATGCTTGTCTC 59.898 54.545 0.00 0.00 0.00 3.36
54 55 1.751351 TCCCTCACTATGCTTGTCTCG 59.249 52.381 0.00 0.00 0.00 4.04
55 56 1.478510 CCCTCACTATGCTTGTCTCGT 59.521 52.381 0.00 0.00 0.00 4.18
56 57 2.534298 CCTCACTATGCTTGTCTCGTG 58.466 52.381 0.00 0.00 0.00 4.35
57 58 2.534298 CTCACTATGCTTGTCTCGTGG 58.466 52.381 0.00 0.00 0.00 4.94
58 59 2.164422 CTCACTATGCTTGTCTCGTGGA 59.836 50.000 0.00 0.00 0.00 4.02
59 60 2.760650 TCACTATGCTTGTCTCGTGGAT 59.239 45.455 0.00 0.00 0.00 3.41
60 61 3.951680 TCACTATGCTTGTCTCGTGGATA 59.048 43.478 0.00 0.00 0.00 2.59
61 62 4.401202 TCACTATGCTTGTCTCGTGGATAA 59.599 41.667 0.00 0.00 0.00 1.75
62 63 5.069119 TCACTATGCTTGTCTCGTGGATAAT 59.931 40.000 0.00 0.00 0.00 1.28
63 64 5.755375 CACTATGCTTGTCTCGTGGATAATT 59.245 40.000 0.00 0.00 0.00 1.40
64 65 6.258727 CACTATGCTTGTCTCGTGGATAATTT 59.741 38.462 0.00 0.00 0.00 1.82
65 66 4.944962 TGCTTGTCTCGTGGATAATTTG 57.055 40.909 0.00 0.00 0.00 2.32
66 67 3.689161 TGCTTGTCTCGTGGATAATTTGG 59.311 43.478 0.00 0.00 0.00 3.28
67 68 3.938963 GCTTGTCTCGTGGATAATTTGGA 59.061 43.478 0.00 0.00 0.00 3.53
68 69 4.394920 GCTTGTCTCGTGGATAATTTGGAA 59.605 41.667 0.00 0.00 0.00 3.53
69 70 5.066505 GCTTGTCTCGTGGATAATTTGGAAT 59.933 40.000 0.00 0.00 0.00 3.01
70 71 6.435430 TTGTCTCGTGGATAATTTGGAATG 57.565 37.500 0.00 0.00 0.00 2.67
71 72 5.739959 TGTCTCGTGGATAATTTGGAATGA 58.260 37.500 0.00 0.00 0.00 2.57
72 73 5.817296 TGTCTCGTGGATAATTTGGAATGAG 59.183 40.000 0.00 0.00 0.00 2.90
73 74 6.049149 GTCTCGTGGATAATTTGGAATGAGA 58.951 40.000 0.00 0.00 0.00 3.27
74 75 6.201806 GTCTCGTGGATAATTTGGAATGAGAG 59.798 42.308 0.00 0.00 32.03 3.20
75 76 6.098266 TCTCGTGGATAATTTGGAATGAGAGA 59.902 38.462 0.00 0.00 0.00 3.10
76 77 6.649155 TCGTGGATAATTTGGAATGAGAGAA 58.351 36.000 0.00 0.00 0.00 2.87
77 78 7.109501 TCGTGGATAATTTGGAATGAGAGAAA 58.890 34.615 0.00 0.00 0.00 2.52
78 79 7.065803 TCGTGGATAATTTGGAATGAGAGAAAC 59.934 37.037 0.00 0.00 0.00 2.78
79 80 7.189512 GTGGATAATTTGGAATGAGAGAAACG 58.810 38.462 0.00 0.00 0.00 3.60
80 81 6.183360 TGGATAATTTGGAATGAGAGAAACGC 60.183 38.462 0.00 0.00 0.00 4.84
81 82 6.038714 GGATAATTTGGAATGAGAGAAACGCT 59.961 38.462 0.00 0.00 0.00 5.07
82 83 7.226720 GGATAATTTGGAATGAGAGAAACGCTA 59.773 37.037 0.00 0.00 0.00 4.26
83 84 6.428385 AATTTGGAATGAGAGAAACGCTAG 57.572 37.500 0.00 0.00 0.00 3.42
84 85 4.801330 TTGGAATGAGAGAAACGCTAGA 57.199 40.909 0.00 0.00 0.00 2.43
85 86 4.377839 TGGAATGAGAGAAACGCTAGAG 57.622 45.455 0.00 0.00 0.00 2.43
86 87 3.764434 TGGAATGAGAGAAACGCTAGAGT 59.236 43.478 0.00 0.00 0.00 3.24
87 88 4.948004 TGGAATGAGAGAAACGCTAGAGTA 59.052 41.667 0.00 0.00 0.00 2.59
88 89 5.594725 TGGAATGAGAGAAACGCTAGAGTAT 59.405 40.000 0.00 0.00 0.00 2.12
89 90 6.096987 TGGAATGAGAGAAACGCTAGAGTATT 59.903 38.462 0.00 0.00 0.00 1.89
90 91 6.981559 GGAATGAGAGAAACGCTAGAGTATTT 59.018 38.462 0.00 0.00 0.00 1.40
91 92 7.168469 GGAATGAGAGAAACGCTAGAGTATTTC 59.832 40.741 0.00 1.20 0.00 2.17
92 93 5.570344 TGAGAGAAACGCTAGAGTATTTCG 58.430 41.667 0.00 0.00 36.41 3.46
93 94 4.352887 AGAGAAACGCTAGAGTATTTCGC 58.647 43.478 0.00 3.30 36.41 4.70
94 95 3.445857 AGAAACGCTAGAGTATTTCGCC 58.554 45.455 0.00 0.00 36.41 5.54
95 96 2.953466 AACGCTAGAGTATTTCGCCA 57.047 45.000 0.00 0.00 0.00 5.69
96 97 2.205307 ACGCTAGAGTATTTCGCCAC 57.795 50.000 0.00 0.00 0.00 5.01
97 98 1.475280 ACGCTAGAGTATTTCGCCACA 59.525 47.619 0.00 0.00 0.00 4.17
98 99 2.094390 ACGCTAGAGTATTTCGCCACAA 60.094 45.455 0.00 0.00 0.00 3.33
99 100 2.927477 CGCTAGAGTATTTCGCCACAAA 59.073 45.455 0.00 0.00 0.00 2.83
100 101 3.369756 CGCTAGAGTATTTCGCCACAAAA 59.630 43.478 0.00 0.00 0.00 2.44
101 102 4.492570 CGCTAGAGTATTTCGCCACAAAAG 60.493 45.833 0.00 0.00 0.00 2.27
102 103 4.392138 GCTAGAGTATTTCGCCACAAAAGT 59.608 41.667 0.00 0.00 0.00 2.66
103 104 4.749245 AGAGTATTTCGCCACAAAAGTG 57.251 40.909 0.00 0.00 0.00 3.16
104 105 3.058224 AGAGTATTTCGCCACAAAAGTGC 60.058 43.478 0.00 0.00 0.00 4.40
110 111 4.999939 CCACAAAAGTGCGCCGCC 63.000 66.667 6.63 0.00 0.00 6.13
111 112 3.964875 CACAAAAGTGCGCCGCCT 61.965 61.111 6.63 0.00 0.00 5.52
112 113 2.281208 ACAAAAGTGCGCCGCCTA 60.281 55.556 6.63 0.00 0.00 3.93
113 114 2.175811 CAAAAGTGCGCCGCCTAC 59.824 61.111 6.63 0.00 0.00 3.18
114 115 2.281208 AAAAGTGCGCCGCCTACA 60.281 55.556 6.63 0.00 0.00 2.74
115 116 1.894756 AAAAGTGCGCCGCCTACAA 60.895 52.632 6.63 0.00 0.00 2.41
116 117 1.852067 AAAAGTGCGCCGCCTACAAG 61.852 55.000 6.63 0.00 0.00 3.16
121 122 3.195698 CGCCGCCTACAAGCCTTC 61.196 66.667 0.00 0.00 0.00 3.46
122 123 2.269241 GCCGCCTACAAGCCTTCT 59.731 61.111 0.00 0.00 0.00 2.85
123 124 1.815840 GCCGCCTACAAGCCTTCTC 60.816 63.158 0.00 0.00 0.00 2.87
124 125 1.153349 CCGCCTACAAGCCTTCTCC 60.153 63.158 0.00 0.00 0.00 3.71
125 126 1.596934 CGCCTACAAGCCTTCTCCA 59.403 57.895 0.00 0.00 0.00 3.86
126 127 0.036388 CGCCTACAAGCCTTCTCCAA 60.036 55.000 0.00 0.00 0.00 3.53
127 128 1.454201 GCCTACAAGCCTTCTCCAAC 58.546 55.000 0.00 0.00 0.00 3.77
128 129 1.003696 GCCTACAAGCCTTCTCCAACT 59.996 52.381 0.00 0.00 0.00 3.16
129 130 2.553247 GCCTACAAGCCTTCTCCAACTT 60.553 50.000 0.00 0.00 0.00 2.66
130 131 3.077359 CCTACAAGCCTTCTCCAACTTG 58.923 50.000 0.00 0.00 43.99 3.16
131 132 2.736670 ACAAGCCTTCTCCAACTTGT 57.263 45.000 1.58 1.58 45.86 3.16
134 135 4.489679 CAAGCCTTCTCCAACTTGTAAC 57.510 45.455 0.00 0.00 35.81 2.50
135 136 3.141767 AGCCTTCTCCAACTTGTAACC 57.858 47.619 0.00 0.00 0.00 2.85
136 137 1.804748 GCCTTCTCCAACTTGTAACCG 59.195 52.381 0.00 0.00 0.00 4.44
137 138 2.549349 GCCTTCTCCAACTTGTAACCGA 60.549 50.000 0.00 0.00 0.00 4.69
138 139 3.868754 GCCTTCTCCAACTTGTAACCGAT 60.869 47.826 0.00 0.00 0.00 4.18
139 140 3.684788 CCTTCTCCAACTTGTAACCGATG 59.315 47.826 0.00 0.00 0.00 3.84
140 141 4.562757 CCTTCTCCAACTTGTAACCGATGA 60.563 45.833 0.00 0.00 0.00 2.92
141 142 4.188247 TCTCCAACTTGTAACCGATGAG 57.812 45.455 0.00 0.00 0.00 2.90
143 144 1.737793 CCAACTTGTAACCGATGAGGC 59.262 52.381 0.00 0.00 46.52 4.70
144 145 2.422597 CAACTTGTAACCGATGAGGCA 58.577 47.619 0.00 0.00 46.52 4.75
145 146 2.811431 CAACTTGTAACCGATGAGGCAA 59.189 45.455 0.00 0.00 46.52 4.52
146 147 3.134574 ACTTGTAACCGATGAGGCAAA 57.865 42.857 0.00 0.00 46.52 3.68
147 148 3.074412 ACTTGTAACCGATGAGGCAAAG 58.926 45.455 0.00 0.00 46.52 2.77
148 149 1.448985 TGTAACCGATGAGGCAAAGC 58.551 50.000 0.00 0.00 46.52 3.51
149 150 1.003118 TGTAACCGATGAGGCAAAGCT 59.997 47.619 0.00 0.00 46.52 3.74
150 151 2.084546 GTAACCGATGAGGCAAAGCTT 58.915 47.619 0.00 0.00 46.52 3.74
151 152 1.620822 AACCGATGAGGCAAAGCTTT 58.379 45.000 5.69 5.69 46.52 3.51
152 153 0.883833 ACCGATGAGGCAAAGCTTTG 59.116 50.000 30.70 30.70 46.52 2.77
153 154 0.171903 CCGATGAGGCAAAGCTTTGG 59.828 55.000 34.02 18.65 38.57 3.28
154 155 0.171903 CGATGAGGCAAAGCTTTGGG 59.828 55.000 34.02 15.55 38.57 4.12
155 156 1.260544 GATGAGGCAAAGCTTTGGGT 58.739 50.000 34.02 1.54 38.57 4.51
156 157 2.446435 GATGAGGCAAAGCTTTGGGTA 58.554 47.619 34.02 4.81 38.57 3.69
157 158 2.603075 TGAGGCAAAGCTTTGGGTAT 57.397 45.000 34.02 8.04 38.57 2.73
158 159 2.446435 TGAGGCAAAGCTTTGGGTATC 58.554 47.619 34.02 19.90 38.57 2.24
159 160 1.751351 GAGGCAAAGCTTTGGGTATCC 59.249 52.381 34.02 26.35 38.57 2.59
160 161 0.455815 GGCAAAGCTTTGGGTATCCG 59.544 55.000 34.02 12.12 38.57 4.18
161 162 0.179137 GCAAAGCTTTGGGTATCCGC 60.179 55.000 34.02 17.60 38.57 5.54
162 163 0.455815 CAAAGCTTTGGGTATCCGCC 59.544 55.000 28.12 0.00 34.59 6.13
163 164 1.029947 AAAGCTTTGGGTATCCGCCG 61.030 55.000 11.80 0.00 35.24 6.46
164 165 2.886730 AAGCTTTGGGTATCCGCCGG 62.887 60.000 0.00 0.00 35.24 6.13
165 166 2.900337 CTTTGGGTATCCGCCGGC 60.900 66.667 19.07 19.07 35.24 6.13
166 167 4.841861 TTTGGGTATCCGCCGGCG 62.842 66.667 41.00 41.00 39.44 6.46
170 171 4.289245 GGTATCCGCCGGCGCTAA 62.289 66.667 42.39 28.85 38.24 3.09
171 172 2.733593 GTATCCGCCGGCGCTAAG 60.734 66.667 42.39 28.48 38.24 2.18
172 173 2.908428 TATCCGCCGGCGCTAAGA 60.908 61.111 42.39 32.57 38.24 2.10
173 174 2.491897 TATCCGCCGGCGCTAAGAA 61.492 57.895 42.39 21.94 38.24 2.52
174 175 1.812686 TATCCGCCGGCGCTAAGAAT 61.813 55.000 42.39 26.33 38.24 2.40
175 176 2.660258 ATCCGCCGGCGCTAAGAATT 62.660 55.000 42.39 17.45 38.24 2.17
176 177 2.469516 CCGCCGGCGCTAAGAATTT 61.470 57.895 42.39 0.00 38.24 1.82
177 178 1.155424 CCGCCGGCGCTAAGAATTTA 61.155 55.000 42.39 0.00 38.24 1.40
178 179 0.232303 CGCCGGCGCTAAGAATTTAG 59.768 55.000 38.48 5.12 39.44 1.85
179 180 0.586802 GCCGGCGCTAAGAATTTAGG 59.413 55.000 12.58 0.00 37.37 2.69
180 181 1.226746 CCGGCGCTAAGAATTTAGGG 58.773 55.000 7.64 6.92 46.81 3.53
181 182 1.202604 CCGGCGCTAAGAATTTAGGGA 60.203 52.381 7.64 0.00 46.97 4.20
182 183 2.557317 CGGCGCTAAGAATTTAGGGAA 58.443 47.619 7.64 0.00 46.97 3.97
183 184 2.287103 CGGCGCTAAGAATTTAGGGAAC 59.713 50.000 7.64 6.18 46.97 3.62
184 185 3.275999 GGCGCTAAGAATTTAGGGAACA 58.724 45.455 7.64 0.00 46.97 3.18
185 186 3.883489 GGCGCTAAGAATTTAGGGAACAT 59.117 43.478 7.64 0.00 46.97 2.71
186 187 4.338400 GGCGCTAAGAATTTAGGGAACATT 59.662 41.667 7.64 0.00 46.97 2.71
187 188 5.273944 GCGCTAAGAATTTAGGGAACATTG 58.726 41.667 13.47 0.00 46.97 2.82
188 189 5.163652 GCGCTAAGAATTTAGGGAACATTGT 60.164 40.000 13.47 0.00 46.97 2.71
189 190 6.037830 GCGCTAAGAATTTAGGGAACATTGTA 59.962 38.462 13.47 0.00 46.97 2.41
190 191 7.414762 GCGCTAAGAATTTAGGGAACATTGTAA 60.415 37.037 13.47 0.00 46.97 2.41
191 192 8.621286 CGCTAAGAATTTAGGGAACATTGTAAT 58.379 33.333 5.70 0.00 46.97 1.89
196 197 8.621286 AGAATTTAGGGAACATTGTAATAAGCG 58.379 33.333 0.00 0.00 0.00 4.68
197 198 8.514330 AATTTAGGGAACATTGTAATAAGCGA 57.486 30.769 0.00 0.00 0.00 4.93
198 199 7.548196 TTTAGGGAACATTGTAATAAGCGAG 57.452 36.000 0.00 0.00 0.00 5.03
199 200 5.099042 AGGGAACATTGTAATAAGCGAGT 57.901 39.130 0.00 0.00 0.00 4.18
200 201 6.229936 AGGGAACATTGTAATAAGCGAGTA 57.770 37.500 0.00 0.00 0.00 2.59
201 202 6.646267 AGGGAACATTGTAATAAGCGAGTAA 58.354 36.000 0.00 0.00 0.00 2.24
202 203 7.280356 AGGGAACATTGTAATAAGCGAGTAAT 58.720 34.615 0.00 0.00 0.00 1.89
203 204 7.773690 AGGGAACATTGTAATAAGCGAGTAATT 59.226 33.333 0.00 0.00 0.00 1.40
204 205 7.855904 GGGAACATTGTAATAAGCGAGTAATTG 59.144 37.037 0.00 0.00 0.00 2.32
205 206 7.376072 GGAACATTGTAATAAGCGAGTAATTGC 59.624 37.037 0.00 0.00 0.00 3.56
206 207 6.725246 ACATTGTAATAAGCGAGTAATTGCC 58.275 36.000 0.00 0.00 0.00 4.52
207 208 6.317642 ACATTGTAATAAGCGAGTAATTGCCA 59.682 34.615 0.00 0.00 0.00 4.92
208 209 5.984233 TGTAATAAGCGAGTAATTGCCAG 57.016 39.130 0.00 0.00 0.00 4.85
209 210 4.814234 TGTAATAAGCGAGTAATTGCCAGG 59.186 41.667 0.00 0.00 0.00 4.45
210 211 1.663695 TAAGCGAGTAATTGCCAGGC 58.336 50.000 3.66 3.66 0.00 4.85
211 212 1.032114 AAGCGAGTAATTGCCAGGCC 61.032 55.000 9.64 0.00 0.00 5.19
212 213 2.823829 GCGAGTAATTGCCAGGCCG 61.824 63.158 9.64 4.12 0.00 6.13
213 214 1.449601 CGAGTAATTGCCAGGCCGT 60.450 57.895 9.64 0.00 0.00 5.68
214 215 1.705337 CGAGTAATTGCCAGGCCGTG 61.705 60.000 9.64 0.00 0.00 4.94
215 216 0.392461 GAGTAATTGCCAGGCCGTGA 60.392 55.000 9.64 0.00 0.00 4.35
216 217 0.255890 AGTAATTGCCAGGCCGTGAT 59.744 50.000 9.64 0.00 0.00 3.06
217 218 0.381801 GTAATTGCCAGGCCGTGATG 59.618 55.000 9.64 0.00 0.00 3.07
218 219 0.034574 TAATTGCCAGGCCGTGATGT 60.035 50.000 9.64 0.00 0.00 3.06
219 220 1.597797 AATTGCCAGGCCGTGATGTG 61.598 55.000 9.64 0.00 0.00 3.21
220 221 2.769652 ATTGCCAGGCCGTGATGTGT 62.770 55.000 9.64 0.00 0.00 3.72
221 222 3.434319 GCCAGGCCGTGATGTGTG 61.434 66.667 0.00 0.00 0.00 3.82
222 223 2.032528 CCAGGCCGTGATGTGTGT 59.967 61.111 0.00 0.00 0.00 3.72
223 224 1.600636 CCAGGCCGTGATGTGTGTT 60.601 57.895 0.00 0.00 0.00 3.32
224 225 1.575922 CAGGCCGTGATGTGTGTTG 59.424 57.895 0.00 0.00 0.00 3.33
225 226 1.600636 AGGCCGTGATGTGTGTTGG 60.601 57.895 0.00 0.00 0.00 3.77
226 227 2.625823 GGCCGTGATGTGTGTTGGG 61.626 63.158 0.00 0.00 0.00 4.12
227 228 1.896660 GCCGTGATGTGTGTTGGGT 60.897 57.895 0.00 0.00 0.00 4.51
228 229 1.852067 GCCGTGATGTGTGTTGGGTC 61.852 60.000 0.00 0.00 0.00 4.46
229 230 0.533978 CCGTGATGTGTGTTGGGTCA 60.534 55.000 0.00 0.00 0.00 4.02
230 231 0.867746 CGTGATGTGTGTTGGGTCAG 59.132 55.000 0.00 0.00 0.00 3.51
231 232 1.238439 GTGATGTGTGTTGGGTCAGG 58.762 55.000 0.00 0.00 0.00 3.86
232 233 0.843309 TGATGTGTGTTGGGTCAGGT 59.157 50.000 0.00 0.00 0.00 4.00
233 234 1.202758 TGATGTGTGTTGGGTCAGGTC 60.203 52.381 0.00 0.00 0.00 3.85
234 235 1.072331 GATGTGTGTTGGGTCAGGTCT 59.928 52.381 0.00 0.00 0.00 3.85
235 236 0.916086 TGTGTGTTGGGTCAGGTCTT 59.084 50.000 0.00 0.00 0.00 3.01
236 237 1.308998 GTGTGTTGGGTCAGGTCTTG 58.691 55.000 0.00 0.00 0.00 3.02
237 238 0.916086 TGTGTTGGGTCAGGTCTTGT 59.084 50.000 0.00 0.00 0.00 3.16
238 239 2.120312 TGTGTTGGGTCAGGTCTTGTA 58.880 47.619 0.00 0.00 0.00 2.41
239 240 2.506231 TGTGTTGGGTCAGGTCTTGTAA 59.494 45.455 0.00 0.00 0.00 2.41
240 241 2.876550 GTGTTGGGTCAGGTCTTGTAAC 59.123 50.000 0.00 0.00 0.00 2.50
241 242 2.506231 TGTTGGGTCAGGTCTTGTAACA 59.494 45.455 0.00 0.00 0.00 2.41
242 243 2.876550 GTTGGGTCAGGTCTTGTAACAC 59.123 50.000 0.00 0.00 0.00 3.32
243 244 2.404559 TGGGTCAGGTCTTGTAACACT 58.595 47.619 0.00 0.00 0.00 3.55
244 245 2.367567 TGGGTCAGGTCTTGTAACACTC 59.632 50.000 0.00 0.00 0.00 3.51
245 246 2.289506 GGGTCAGGTCTTGTAACACTCC 60.290 54.545 0.00 0.00 0.00 3.85
246 247 2.367567 GGTCAGGTCTTGTAACACTCCA 59.632 50.000 0.00 0.00 0.00 3.86
247 248 3.181458 GGTCAGGTCTTGTAACACTCCAA 60.181 47.826 0.00 0.00 0.00 3.53
248 249 4.448210 GTCAGGTCTTGTAACACTCCAAA 58.552 43.478 0.00 0.00 0.00 3.28
249 250 4.879545 GTCAGGTCTTGTAACACTCCAAAA 59.120 41.667 0.00 0.00 0.00 2.44
250 251 4.879545 TCAGGTCTTGTAACACTCCAAAAC 59.120 41.667 0.00 0.00 0.00 2.43
251 252 4.638421 CAGGTCTTGTAACACTCCAAAACA 59.362 41.667 0.00 0.00 0.00 2.83
252 253 4.638865 AGGTCTTGTAACACTCCAAAACAC 59.361 41.667 0.00 0.00 0.00 3.32
253 254 4.638865 GGTCTTGTAACACTCCAAAACACT 59.361 41.667 0.00 0.00 0.00 3.55
254 255 5.220796 GGTCTTGTAACACTCCAAAACACTC 60.221 44.000 0.00 0.00 0.00 3.51
255 256 5.585047 GTCTTGTAACACTCCAAAACACTCT 59.415 40.000 0.00 0.00 0.00 3.24
256 257 6.759827 GTCTTGTAACACTCCAAAACACTCTA 59.240 38.462 0.00 0.00 0.00 2.43
257 258 7.441458 GTCTTGTAACACTCCAAAACACTCTAT 59.559 37.037 0.00 0.00 0.00 1.98
258 259 7.656137 TCTTGTAACACTCCAAAACACTCTATC 59.344 37.037 0.00 0.00 0.00 2.08
259 260 6.228258 TGTAACACTCCAAAACACTCTATCC 58.772 40.000 0.00 0.00 0.00 2.59
260 261 5.568620 AACACTCCAAAACACTCTATCCT 57.431 39.130 0.00 0.00 0.00 3.24
261 262 5.568620 ACACTCCAAAACACTCTATCCTT 57.431 39.130 0.00 0.00 0.00 3.36
262 263 5.552178 ACACTCCAAAACACTCTATCCTTC 58.448 41.667 0.00 0.00 0.00 3.46
263 264 5.308237 ACACTCCAAAACACTCTATCCTTCT 59.692 40.000 0.00 0.00 0.00 2.85
264 265 5.872070 CACTCCAAAACACTCTATCCTTCTC 59.128 44.000 0.00 0.00 0.00 2.87
265 266 5.544176 ACTCCAAAACACTCTATCCTTCTCA 59.456 40.000 0.00 0.00 0.00 3.27
266 267 6.214412 ACTCCAAAACACTCTATCCTTCTCAT 59.786 38.462 0.00 0.00 0.00 2.90
267 268 7.020827 TCCAAAACACTCTATCCTTCTCATT 57.979 36.000 0.00 0.00 0.00 2.57
268 269 7.461749 TCCAAAACACTCTATCCTTCTCATTT 58.538 34.615 0.00 0.00 0.00 2.32
269 270 8.602424 TCCAAAACACTCTATCCTTCTCATTTA 58.398 33.333 0.00 0.00 0.00 1.40
270 271 9.231297 CCAAAACACTCTATCCTTCTCATTTAA 57.769 33.333 0.00 0.00 0.00 1.52
282 283 9.857656 ATCCTTCTCATTTAATAGATGAGCAAA 57.142 29.630 13.99 5.67 46.40 3.68
283 284 9.857656 TCCTTCTCATTTAATAGATGAGCAAAT 57.142 29.630 13.99 0.00 46.40 2.32
291 292 8.931385 TTTAATAGATGAGCAAATCTTTTGCC 57.069 30.769 18.48 11.95 45.98 4.52
292 293 6.786967 AATAGATGAGCAAATCTTTTGCCT 57.213 33.333 18.48 12.05 45.98 4.75
293 294 4.715527 AGATGAGCAAATCTTTTGCCTC 57.284 40.909 18.48 15.32 45.98 4.70
294 295 4.342359 AGATGAGCAAATCTTTTGCCTCT 58.658 39.130 18.48 15.16 45.98 3.69
295 296 3.928727 TGAGCAAATCTTTTGCCTCTG 57.071 42.857 18.48 0.00 45.98 3.35
296 297 3.225104 TGAGCAAATCTTTTGCCTCTGT 58.775 40.909 18.48 2.95 45.98 3.41
297 298 3.638160 TGAGCAAATCTTTTGCCTCTGTT 59.362 39.130 18.48 2.31 45.98 3.16
298 299 4.099881 TGAGCAAATCTTTTGCCTCTGTTT 59.900 37.500 18.48 1.67 45.98 2.83
299 300 4.625028 AGCAAATCTTTTGCCTCTGTTTC 58.375 39.130 18.48 0.00 45.98 2.78
300 301 3.426525 GCAAATCTTTTGCCTCTGTTTCG 59.573 43.478 12.74 0.00 39.38 3.46
301 302 4.792704 GCAAATCTTTTGCCTCTGTTTCGA 60.793 41.667 12.74 0.00 39.38 3.71
302 303 5.280945 CAAATCTTTTGCCTCTGTTTCGAA 58.719 37.500 0.00 0.00 0.00 3.71
303 304 5.514274 AATCTTTTGCCTCTGTTTCGAAA 57.486 34.783 6.47 6.47 0.00 3.46
304 305 4.974368 TCTTTTGCCTCTGTTTCGAAAA 57.026 36.364 13.10 2.56 0.00 2.29
305 306 5.317733 TCTTTTGCCTCTGTTTCGAAAAA 57.682 34.783 13.10 6.34 0.00 1.94
328 329 3.807631 AACGCAAGACAGCCGAGCA 62.808 57.895 0.00 0.00 43.62 4.26
336 337 3.425713 CAGCCGAGCACAACGCAT 61.426 61.111 0.00 0.00 46.13 4.73
354 355 2.005451 CATGCTGTGTAGACCTTGAGC 58.995 52.381 0.00 0.00 0.00 4.26
355 356 0.038251 TGCTGTGTAGACCTTGAGCG 60.038 55.000 0.00 0.00 0.00 5.03
369 370 3.579709 CTTGAGCGTAACATGAGTCAGT 58.420 45.455 0.00 0.00 0.00 3.41
384 385 0.534877 TCAGTGCTTGACCGCAACAT 60.535 50.000 0.00 0.00 42.32 2.71
390 391 0.387622 CTTGACCGCAACATTGGCAG 60.388 55.000 0.00 0.00 0.00 4.85
406 407 1.807886 CAGGCAATGCAAGAGAGCC 59.192 57.895 7.79 9.39 45.54 4.70
407 408 2.796651 GGCAATGCAAGAGAGCCG 59.203 61.111 7.79 0.00 35.42 5.52
408 409 1.746615 GGCAATGCAAGAGAGCCGA 60.747 57.895 7.79 0.00 35.42 5.54
409 410 1.712977 GGCAATGCAAGAGAGCCGAG 61.713 60.000 7.79 0.00 35.42 4.63
410 411 1.720301 CAATGCAAGAGAGCCGAGC 59.280 57.895 0.00 0.00 0.00 5.03
413 414 2.047844 GCAAGAGAGCCGAGCACA 60.048 61.111 0.00 0.00 0.00 4.57
414 415 2.386660 GCAAGAGAGCCGAGCACAC 61.387 63.158 0.00 0.00 0.00 3.82
415 416 2.091112 CAAGAGAGCCGAGCACACG 61.091 63.158 0.00 0.00 0.00 4.49
426 427 2.556287 GCACACGGCTAACAGCAC 59.444 61.111 0.00 0.00 44.75 4.40
427 428 2.250939 GCACACGGCTAACAGCACA 61.251 57.895 0.00 0.00 44.75 4.57
428 429 1.577328 GCACACGGCTAACAGCACAT 61.577 55.000 0.00 0.00 44.75 3.21
429 430 0.874390 CACACGGCTAACAGCACATT 59.126 50.000 0.00 0.00 44.75 2.71
443 444 3.082698 GCACATTGCAACAGTCAGAAA 57.917 42.857 0.00 0.00 44.26 2.52
445 446 3.243643 GCACATTGCAACAGTCAGAAAAC 59.756 43.478 0.00 0.00 44.26 2.43
555 578 3.761481 CGAAGCAGCAGTCCTTTTG 57.239 52.632 0.00 0.00 0.00 2.44
627 654 2.701006 CGGTCGTGCGGCTATTTG 59.299 61.111 0.00 0.00 0.00 2.32
641 668 3.628942 GGCTATTTGTGTGATGCATCTGA 59.371 43.478 26.32 10.84 0.00 3.27
642 669 4.261072 GGCTATTTGTGTGATGCATCTGAG 60.261 45.833 26.32 12.48 0.00 3.35
643 670 4.261072 GCTATTTGTGTGATGCATCTGAGG 60.261 45.833 26.32 8.76 0.00 3.86
671 698 1.300080 CCGCTTGCTGGGTTGTTTG 60.300 57.895 0.00 0.00 0.00 2.93
808 842 3.764237 TCTAAGCCGTGTCCTTCTTTT 57.236 42.857 0.00 0.00 0.00 2.27
809 843 4.081322 TCTAAGCCGTGTCCTTCTTTTT 57.919 40.909 0.00 0.00 0.00 1.94
821 855 0.302288 TTCTTTTTCGGACACGTGCG 59.698 50.000 17.22 12.54 45.95 5.34
822 856 0.806884 TCTTTTTCGGACACGTGCGT 60.807 50.000 17.22 0.00 44.84 5.24
823 857 0.854062 CTTTTTCGGACACGTGCGTA 59.146 50.000 17.22 2.90 44.84 4.42
824 858 1.458064 CTTTTTCGGACACGTGCGTAT 59.542 47.619 17.22 0.00 44.84 3.06
825 859 1.062258 TTTTCGGACACGTGCGTATC 58.938 50.000 17.22 5.30 44.84 2.24
826 860 0.039346 TTTCGGACACGTGCGTATCA 60.039 50.000 17.22 0.00 44.84 2.15
827 861 0.730155 TTCGGACACGTGCGTATCAC 60.730 55.000 17.22 0.00 44.84 3.06
840 874 1.401148 CGTATCACGAGGCTAATCCCG 60.401 57.143 0.00 0.00 46.05 5.14
841 875 1.884579 GTATCACGAGGCTAATCCCGA 59.115 52.381 0.00 0.00 34.18 5.14
854 889 2.178876 ATCCCGACGTGCCACATTGA 62.179 55.000 0.00 0.00 0.00 2.57
1012 1047 4.058124 GTTCATCACACTTCACTGCAGTA 58.942 43.478 21.20 3.71 0.00 2.74
1030 1065 4.521062 CAAGGCCTCGGCTCTCGG 62.521 72.222 5.23 0.00 37.50 4.63
1042 1077 1.391157 GCTCTCGGCAGACTCCTCAT 61.391 60.000 0.00 0.00 41.35 2.90
1046 1081 1.220206 CGGCAGACTCCTCATTGCT 59.780 57.895 0.00 0.00 36.79 3.91
1096 1134 0.461693 GCGCTGCTCCTGAAAGAGAT 60.462 55.000 0.00 0.00 35.82 2.75
1098 1136 2.739932 GCGCTGCTCCTGAAAGAGATAA 60.740 50.000 0.00 0.00 35.82 1.75
1099 1137 3.122297 CGCTGCTCCTGAAAGAGATAAG 58.878 50.000 0.00 0.00 35.82 1.73
1100 1138 3.181482 CGCTGCTCCTGAAAGAGATAAGA 60.181 47.826 0.00 0.00 35.82 2.10
1103 1148 5.821995 GCTGCTCCTGAAAGAGATAAGAAAT 59.178 40.000 0.00 0.00 35.82 2.17
1253 1298 3.110178 GAACGGTTCCTCCACGCG 61.110 66.667 3.53 3.53 35.57 6.01
1269 1314 2.031516 GCGCTGCACATGTGAGTCT 61.032 57.895 29.80 0.00 0.00 3.24
1272 1317 1.023513 GCTGCACATGTGAGTCTCCC 61.024 60.000 29.80 10.07 0.00 4.30
1273 1318 0.738762 CTGCACATGTGAGTCTCCCG 60.739 60.000 29.80 3.09 0.00 5.14
1274 1319 2.103042 GCACATGTGAGTCTCCCGC 61.103 63.158 29.80 6.64 0.00 6.13
1275 1320 1.593787 CACATGTGAGTCTCCCGCT 59.406 57.895 21.64 0.00 0.00 5.52
1276 1321 0.459237 CACATGTGAGTCTCCCGCTC 60.459 60.000 21.64 0.00 0.00 5.03
1277 1322 1.226802 CATGTGAGTCTCCCGCTCG 60.227 63.158 0.00 0.00 35.85 5.03
1278 1323 3.069980 ATGTGAGTCTCCCGCTCGC 62.070 63.158 0.00 0.00 42.11 5.03
1279 1324 4.500116 GTGAGTCTCCCGCTCGCC 62.500 72.222 0.00 0.00 37.48 5.54
1296 1341 3.827898 CGCCTCTCCCTCGGTCAC 61.828 72.222 0.00 0.00 0.00 3.67
1311 1356 1.338579 GGTCACCTGCTCTTTCCTCTG 60.339 57.143 0.00 0.00 0.00 3.35
1312 1357 0.322975 TCACCTGCTCTTTCCTCTGC 59.677 55.000 0.00 0.00 0.00 4.26
1313 1358 0.324285 CACCTGCTCTTTCCTCTGCT 59.676 55.000 0.00 0.00 0.00 4.24
1314 1359 1.063183 ACCTGCTCTTTCCTCTGCTT 58.937 50.000 0.00 0.00 0.00 3.91
1316 1361 1.002888 CCTGCTCTTTCCTCTGCTTCA 59.997 52.381 0.00 0.00 0.00 3.02
1872 1925 3.129813 ACTTCACATGCACATTGCCATAG 59.870 43.478 0.00 0.00 44.23 2.23
1897 1950 3.628646 ATCACCTCGCTGGCCCAAC 62.629 63.158 0.00 0.00 40.22 3.77
1936 1989 5.615925 AACTTATCCTTTCTCGTGCCTAT 57.384 39.130 0.00 0.00 0.00 2.57
1937 1990 6.726490 AACTTATCCTTTCTCGTGCCTATA 57.274 37.500 0.00 0.00 0.00 1.31
2004 2057 1.935327 GCCTAGGACTCTGCGAACGT 61.935 60.000 14.75 0.00 0.00 3.99
2178 2231 9.582431 TTAGTTTGGATTAGTCTTATTCACTCG 57.418 33.333 0.00 0.00 0.00 4.18
2193 2274 2.289820 TCACTCGCTTAGGCTATGTACG 59.710 50.000 8.95 5.46 36.09 3.67
2257 2338 8.885494 AATCAGACTTCACTCTATTTCATAGC 57.115 34.615 0.00 0.00 32.85 2.97
2259 2340 7.261325 TCAGACTTCACTCTATTTCATAGCAC 58.739 38.462 0.00 0.00 32.85 4.40
2260 2341 7.038048 CAGACTTCACTCTATTTCATAGCACA 58.962 38.462 0.00 0.00 32.85 4.57
2268 2355 7.009999 CACTCTATTTCATAGCACACAGAGAAC 59.990 40.741 0.00 0.00 33.95 3.01
2324 2412 3.063510 CATTATCTGCATCACCCCGAT 57.936 47.619 0.00 0.00 33.27 4.18
2516 2776 6.016777 GCAAGACCAATTTTTCTCTCTCTTCA 60.017 38.462 0.00 0.00 0.00 3.02
2534 2794 7.587629 TCTCTTCAAACTCAAACATTATGCAG 58.412 34.615 0.00 0.00 0.00 4.41
2535 2795 7.229306 TCTCTTCAAACTCAAACATTATGCAGT 59.771 33.333 0.00 0.00 0.00 4.40
2542 2802 7.744087 ACTCAAACATTATGCAGTAGTTTCA 57.256 32.000 0.00 0.00 30.68 2.69
2562 2822 4.828829 TCATCTCCTTTTTCGTCCCTAAC 58.171 43.478 0.00 0.00 0.00 2.34
2564 2824 3.245441 TCTCCTTTTTCGTCCCTAACCT 58.755 45.455 0.00 0.00 0.00 3.50
2605 2865 3.603365 CCCCCAAACTTCATCGGC 58.397 61.111 0.00 0.00 0.00 5.54
2632 3154 1.274703 TGATTCACCTCCCCTCTGCC 61.275 60.000 0.00 0.00 0.00 4.85
2640 3162 4.044439 CCCCTCTGCCTGCTGCTT 62.044 66.667 0.00 0.00 42.00 3.91
2669 3191 3.739613 GGCGGGGAGGGGAATGTT 61.740 66.667 0.00 0.00 0.00 2.71
2691 3213 4.538490 TTAGGCCCCTAACTGAAGAATTCA 59.462 41.667 8.44 0.00 41.99 2.57
2729 3256 1.208535 CCAGTTAAGCACCCATACCGA 59.791 52.381 0.00 0.00 0.00 4.69
2751 3278 6.320171 CGATTCAAGAGAATTCAAATGCAGT 58.680 36.000 8.44 0.00 44.30 4.40
2828 3356 1.296722 CGTGTCCGACGTCGATCTC 60.297 63.158 37.65 25.42 43.50 2.75
2835 3363 0.853419 CGACGTCGATCTCAGATCGA 59.147 55.000 31.61 31.61 46.69 3.59
2852 3380 3.653256 TCGAACGACTGATAGTCTTCG 57.347 47.619 22.63 22.63 45.71 3.79
2862 3390 2.223502 TGATAGTCTTCGTCATGTCGCC 60.224 50.000 7.51 0.00 0.00 5.54
2903 3431 8.354711 AGGGAACTATTCATTTTCTTCTTTCC 57.645 34.615 0.00 0.00 40.61 3.13
2950 3478 8.638873 TGTAATGGCTTATAAGAAAGAGATCGA 58.361 33.333 16.85 0.00 0.00 3.59
2961 3489 5.013547 AGAAAGAGATCGACCAAGAGAAGA 58.986 41.667 0.00 0.00 0.00 2.87
3004 3532 2.183555 CCTAGGCCGTCGTGTTCC 59.816 66.667 0.00 0.00 0.00 3.62
3041 3569 2.258286 GCCTTCGCGGTGCAAAAT 59.742 55.556 6.13 0.00 34.25 1.82
3053 3581 5.514914 CGCGGTGCAAAATCTAATACAAATT 59.485 36.000 0.00 0.00 0.00 1.82
3069 3597 2.038863 AATTCCCCAAGTTTTCCCCC 57.961 50.000 0.00 0.00 0.00 5.40
3070 3598 1.176182 ATTCCCCAAGTTTTCCCCCT 58.824 50.000 0.00 0.00 0.00 4.79
3076 3604 2.567169 CCCAAGTTTTCCCCCTGAATTC 59.433 50.000 0.00 0.00 31.67 2.17
3087 3615 2.154462 CCCTGAATTCGCTCTTGTGTT 58.846 47.619 0.04 0.00 0.00 3.32
3130 3658 1.066358 AGGCAGTAGTTCGGGCTTAAC 60.066 52.381 0.00 0.00 43.50 2.01
3151 3679 5.599999 ACAAAGTGGTATCTAGAGCGATT 57.400 39.130 0.00 0.00 0.00 3.34
3167 3695 1.982073 GATTGGTTCTTGGAGGCGCG 61.982 60.000 0.00 0.00 0.00 6.86
3198 3726 2.626780 GCGAGCAAGGTTGGGGTTC 61.627 63.158 0.00 0.00 0.00 3.62
3219 3747 3.780850 TCTCCCTGGTAAAAATCCTCCTC 59.219 47.826 0.00 0.00 0.00 3.71
3227 3755 4.405036 GGTAAAAATCCTCCTCCGTCTAGT 59.595 45.833 0.00 0.00 0.00 2.57
3229 3757 4.739587 AAAATCCTCCTCCGTCTAGTTC 57.260 45.455 0.00 0.00 0.00 3.01
3277 3805 2.002586 CTGGTGGCATTAGACAGTTCG 58.997 52.381 0.00 0.00 29.33 3.95
3298 3826 1.895131 GGTGTTAGAAGTGGTCGGGTA 59.105 52.381 0.00 0.00 0.00 3.69
3347 3875 1.158007 AAAATCACACCCACCCTCCT 58.842 50.000 0.00 0.00 0.00 3.69
3348 3876 0.698818 AAATCACACCCACCCTCCTC 59.301 55.000 0.00 0.00 0.00 3.71
3350 3878 0.716591 ATCACACCCACCCTCCTCTA 59.283 55.000 0.00 0.00 0.00 2.43
3351 3879 0.041238 TCACACCCACCCTCCTCTAG 59.959 60.000 0.00 0.00 0.00 2.43
3353 3881 1.306141 CACCCACCCTCCTCTAGCA 60.306 63.158 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.250727 CCTGTTGGGGTTCGTCATGT 60.251 55.000 0.00 0.00 0.00 3.21
7 8 3.530910 CTCGCCTGTTGGGGTTCGT 62.531 63.158 0.00 0.00 45.40 3.85
8 9 2.742372 CTCGCCTGTTGGGGTTCG 60.742 66.667 0.00 0.00 45.40 3.95
11 12 1.995626 ATAGCTCGCCTGTTGGGGT 60.996 57.895 0.00 0.00 45.40 4.95
12 13 1.524621 CATAGCTCGCCTGTTGGGG 60.525 63.158 0.00 0.00 46.42 4.96
14 15 2.182842 GCCATAGCTCGCCTGTTGG 61.183 63.158 0.00 0.00 35.50 3.77
20 21 4.321966 GGGAGGCCATAGCTCGCC 62.322 72.222 5.01 10.66 46.09 5.54
21 22 3.233259 GAGGGAGGCCATAGCTCGC 62.233 68.421 5.01 0.92 39.73 5.03
22 23 1.834378 TGAGGGAGGCCATAGCTCG 60.834 63.158 5.01 0.00 39.73 5.03
23 24 0.762461 AGTGAGGGAGGCCATAGCTC 60.762 60.000 5.01 0.00 39.73 4.09
24 25 0.563173 TAGTGAGGGAGGCCATAGCT 59.437 55.000 5.01 0.00 39.73 3.32
25 26 1.277557 CATAGTGAGGGAGGCCATAGC 59.722 57.143 5.01 0.00 38.76 2.97
26 27 1.277557 GCATAGTGAGGGAGGCCATAG 59.722 57.143 5.01 0.00 0.00 2.23
27 28 1.132721 AGCATAGTGAGGGAGGCCATA 60.133 52.381 5.01 0.00 0.00 2.74
28 29 0.401105 AGCATAGTGAGGGAGGCCAT 60.401 55.000 5.01 0.00 0.00 4.40
29 30 0.621571 AAGCATAGTGAGGGAGGCCA 60.622 55.000 5.01 0.00 0.00 5.36
30 31 0.179034 CAAGCATAGTGAGGGAGGCC 60.179 60.000 0.00 0.00 0.00 5.19
31 32 0.543749 ACAAGCATAGTGAGGGAGGC 59.456 55.000 0.00 0.00 0.00 4.70
32 33 2.102252 GAGACAAGCATAGTGAGGGAGG 59.898 54.545 0.00 0.00 0.00 4.30
33 34 2.223688 CGAGACAAGCATAGTGAGGGAG 60.224 54.545 0.00 0.00 0.00 4.30
34 35 1.751351 CGAGACAAGCATAGTGAGGGA 59.249 52.381 0.00 0.00 0.00 4.20
35 36 1.478510 ACGAGACAAGCATAGTGAGGG 59.521 52.381 0.00 0.00 0.00 4.30
36 37 2.534298 CACGAGACAAGCATAGTGAGG 58.466 52.381 0.00 0.00 0.00 3.86
37 38 2.164422 TCCACGAGACAAGCATAGTGAG 59.836 50.000 0.00 0.00 0.00 3.51
38 39 2.167662 TCCACGAGACAAGCATAGTGA 58.832 47.619 0.00 0.00 0.00 3.41
39 40 2.654749 TCCACGAGACAAGCATAGTG 57.345 50.000 0.00 0.00 0.00 2.74
40 41 5.537300 ATTATCCACGAGACAAGCATAGT 57.463 39.130 0.00 0.00 0.00 2.12
41 42 6.293081 CCAAATTATCCACGAGACAAGCATAG 60.293 42.308 0.00 0.00 0.00 2.23
42 43 5.527214 CCAAATTATCCACGAGACAAGCATA 59.473 40.000 0.00 0.00 0.00 3.14
43 44 4.336433 CCAAATTATCCACGAGACAAGCAT 59.664 41.667 0.00 0.00 0.00 3.79
44 45 3.689161 CCAAATTATCCACGAGACAAGCA 59.311 43.478 0.00 0.00 0.00 3.91
45 46 3.938963 TCCAAATTATCCACGAGACAAGC 59.061 43.478 0.00 0.00 0.00 4.01
46 47 6.316140 TCATTCCAAATTATCCACGAGACAAG 59.684 38.462 0.00 0.00 0.00 3.16
47 48 6.176896 TCATTCCAAATTATCCACGAGACAA 58.823 36.000 0.00 0.00 0.00 3.18
48 49 5.739959 TCATTCCAAATTATCCACGAGACA 58.260 37.500 0.00 0.00 0.00 3.41
49 50 6.049149 TCTCATTCCAAATTATCCACGAGAC 58.951 40.000 0.00 0.00 0.00 3.36
50 51 6.098266 TCTCTCATTCCAAATTATCCACGAGA 59.902 38.462 0.00 0.00 0.00 4.04
51 52 6.283694 TCTCTCATTCCAAATTATCCACGAG 58.716 40.000 0.00 0.00 0.00 4.18
52 53 6.233905 TCTCTCATTCCAAATTATCCACGA 57.766 37.500 0.00 0.00 0.00 4.35
53 54 6.925610 TTCTCTCATTCCAAATTATCCACG 57.074 37.500 0.00 0.00 0.00 4.94
54 55 7.189512 CGTTTCTCTCATTCCAAATTATCCAC 58.810 38.462 0.00 0.00 0.00 4.02
55 56 6.183360 GCGTTTCTCTCATTCCAAATTATCCA 60.183 38.462 0.00 0.00 0.00 3.41
56 57 6.038714 AGCGTTTCTCTCATTCCAAATTATCC 59.961 38.462 0.00 0.00 0.00 2.59
57 58 7.020914 AGCGTTTCTCTCATTCCAAATTATC 57.979 36.000 0.00 0.00 0.00 1.75
58 59 7.987458 TCTAGCGTTTCTCTCATTCCAAATTAT 59.013 33.333 0.00 0.00 0.00 1.28
59 60 7.327975 TCTAGCGTTTCTCTCATTCCAAATTA 58.672 34.615 0.00 0.00 0.00 1.40
60 61 6.173339 TCTAGCGTTTCTCTCATTCCAAATT 58.827 36.000 0.00 0.00 0.00 1.82
61 62 5.734720 TCTAGCGTTTCTCTCATTCCAAAT 58.265 37.500 0.00 0.00 0.00 2.32
62 63 5.147330 TCTAGCGTTTCTCTCATTCCAAA 57.853 39.130 0.00 0.00 0.00 3.28
63 64 4.220821 ACTCTAGCGTTTCTCTCATTCCAA 59.779 41.667 0.00 0.00 0.00 3.53
64 65 3.764434 ACTCTAGCGTTTCTCTCATTCCA 59.236 43.478 0.00 0.00 0.00 3.53
65 66 4.379339 ACTCTAGCGTTTCTCTCATTCC 57.621 45.455 0.00 0.00 0.00 3.01
66 67 7.096803 CGAAATACTCTAGCGTTTCTCTCATTC 60.097 40.741 0.00 0.00 0.00 2.67
67 68 6.693545 CGAAATACTCTAGCGTTTCTCTCATT 59.306 38.462 0.00 0.00 0.00 2.57
68 69 6.202937 CGAAATACTCTAGCGTTTCTCTCAT 58.797 40.000 0.00 0.00 0.00 2.90
69 70 5.570344 CGAAATACTCTAGCGTTTCTCTCA 58.430 41.667 0.00 0.00 0.00 3.27
70 71 4.438471 GCGAAATACTCTAGCGTTTCTCTC 59.562 45.833 0.00 0.00 0.00 3.20
71 72 4.352887 GCGAAATACTCTAGCGTTTCTCT 58.647 43.478 0.00 0.00 0.00 3.10
72 73 3.486474 GGCGAAATACTCTAGCGTTTCTC 59.514 47.826 0.00 0.00 0.00 2.87
73 74 3.119245 TGGCGAAATACTCTAGCGTTTCT 60.119 43.478 0.00 0.00 0.00 2.52
74 75 3.000022 GTGGCGAAATACTCTAGCGTTTC 60.000 47.826 0.00 0.00 0.00 2.78
75 76 2.928116 GTGGCGAAATACTCTAGCGTTT 59.072 45.455 0.00 0.00 0.00 3.60
76 77 2.094390 TGTGGCGAAATACTCTAGCGTT 60.094 45.455 0.00 0.00 0.00 4.84
77 78 1.475280 TGTGGCGAAATACTCTAGCGT 59.525 47.619 0.00 0.00 0.00 5.07
78 79 2.203800 TGTGGCGAAATACTCTAGCG 57.796 50.000 0.00 0.00 0.00 4.26
79 80 4.392138 ACTTTTGTGGCGAAATACTCTAGC 59.608 41.667 0.00 0.00 0.00 3.42
80 81 5.858475 CACTTTTGTGGCGAAATACTCTAG 58.142 41.667 0.00 0.00 46.16 2.43
81 82 5.856126 CACTTTTGTGGCGAAATACTCTA 57.144 39.130 0.00 0.00 46.16 2.43
82 83 4.749245 CACTTTTGTGGCGAAATACTCT 57.251 40.909 0.00 0.00 46.16 3.24
95 96 2.281208 TAGGCGGCGCACTTTTGT 60.281 55.556 34.36 10.56 0.00 2.83
96 97 2.123988 TTGTAGGCGGCGCACTTTTG 62.124 55.000 34.36 0.00 0.00 2.44
97 98 1.852067 CTTGTAGGCGGCGCACTTTT 61.852 55.000 34.36 15.00 0.00 2.27
98 99 2.281208 TTGTAGGCGGCGCACTTT 60.281 55.556 34.36 17.55 0.00 2.66
99 100 2.742372 CTTGTAGGCGGCGCACTT 60.742 61.111 34.36 20.14 0.00 3.16
104 105 3.195698 GAAGGCTTGTAGGCGGCG 61.196 66.667 3.46 0.51 46.58 6.46
105 106 1.815840 GAGAAGGCTTGTAGGCGGC 60.816 63.158 3.46 0.00 46.58 6.53
106 107 1.153349 GGAGAAGGCTTGTAGGCGG 60.153 63.158 3.46 0.00 46.58 6.13
107 108 0.036388 TTGGAGAAGGCTTGTAGGCG 60.036 55.000 3.46 0.00 46.58 5.52
108 109 1.003696 AGTTGGAGAAGGCTTGTAGGC 59.996 52.381 3.46 0.00 41.73 3.93
109 110 3.077359 CAAGTTGGAGAAGGCTTGTAGG 58.923 50.000 3.46 0.00 35.09 3.18
110 111 3.744660 ACAAGTTGGAGAAGGCTTGTAG 58.255 45.455 3.46 0.00 46.39 2.74
111 112 3.857157 ACAAGTTGGAGAAGGCTTGTA 57.143 42.857 3.46 0.00 46.39 2.41
112 113 2.736670 ACAAGTTGGAGAAGGCTTGT 57.263 45.000 3.46 0.00 44.36 3.16
113 114 3.253432 GGTTACAAGTTGGAGAAGGCTTG 59.747 47.826 3.46 0.00 42.65 4.01
114 115 3.487372 GGTTACAAGTTGGAGAAGGCTT 58.513 45.455 7.96 0.00 0.00 4.35
115 116 2.550208 CGGTTACAAGTTGGAGAAGGCT 60.550 50.000 7.96 0.00 0.00 4.58
116 117 1.804748 CGGTTACAAGTTGGAGAAGGC 59.195 52.381 7.96 0.00 0.00 4.35
117 118 3.396260 TCGGTTACAAGTTGGAGAAGG 57.604 47.619 7.96 0.00 0.00 3.46
118 119 4.566004 TCATCGGTTACAAGTTGGAGAAG 58.434 43.478 7.96 0.00 0.00 2.85
119 120 4.562757 CCTCATCGGTTACAAGTTGGAGAA 60.563 45.833 7.96 0.00 0.00 2.87
120 121 3.056107 CCTCATCGGTTACAAGTTGGAGA 60.056 47.826 7.96 0.00 0.00 3.71
121 122 3.262420 CCTCATCGGTTACAAGTTGGAG 58.738 50.000 7.96 1.53 0.00 3.86
122 123 2.614481 GCCTCATCGGTTACAAGTTGGA 60.614 50.000 7.96 0.00 34.25 3.53
123 124 1.737793 GCCTCATCGGTTACAAGTTGG 59.262 52.381 7.96 0.00 34.25 3.77
124 125 2.422597 TGCCTCATCGGTTACAAGTTG 58.577 47.619 0.00 0.00 34.25 3.16
125 126 2.851263 TGCCTCATCGGTTACAAGTT 57.149 45.000 0.00 0.00 34.25 2.66
126 127 2.851263 TTGCCTCATCGGTTACAAGT 57.149 45.000 0.00 0.00 34.25 3.16
127 128 2.159517 GCTTTGCCTCATCGGTTACAAG 60.160 50.000 0.00 0.00 34.25 3.16
128 129 1.810151 GCTTTGCCTCATCGGTTACAA 59.190 47.619 0.00 0.00 34.25 2.41
129 130 1.003118 AGCTTTGCCTCATCGGTTACA 59.997 47.619 0.00 0.00 34.25 2.41
130 131 1.739067 AGCTTTGCCTCATCGGTTAC 58.261 50.000 0.00 0.00 34.25 2.50
131 132 2.487762 CAAAGCTTTGCCTCATCGGTTA 59.512 45.455 25.26 0.00 34.25 2.85
132 133 1.270550 CAAAGCTTTGCCTCATCGGTT 59.729 47.619 25.26 0.00 34.25 4.44
133 134 0.883833 CAAAGCTTTGCCTCATCGGT 59.116 50.000 25.26 0.00 34.25 4.69
134 135 0.171903 CCAAAGCTTTGCCTCATCGG 59.828 55.000 29.93 12.85 36.86 4.18
135 136 0.171903 CCCAAAGCTTTGCCTCATCG 59.828 55.000 29.93 16.02 36.86 3.84
136 137 1.260544 ACCCAAAGCTTTGCCTCATC 58.739 50.000 29.93 0.00 36.86 2.92
137 138 2.603075 TACCCAAAGCTTTGCCTCAT 57.397 45.000 29.93 16.05 36.86 2.90
138 139 2.446435 GATACCCAAAGCTTTGCCTCA 58.554 47.619 29.93 16.18 36.86 3.86
139 140 1.751351 GGATACCCAAAGCTTTGCCTC 59.249 52.381 29.93 21.13 36.86 4.70
140 141 1.852633 GGATACCCAAAGCTTTGCCT 58.147 50.000 29.93 19.51 36.86 4.75
141 142 0.455815 CGGATACCCAAAGCTTTGCC 59.544 55.000 29.93 23.32 36.86 4.52
142 143 0.179137 GCGGATACCCAAAGCTTTGC 60.179 55.000 29.93 17.29 36.86 3.68
143 144 0.455815 GGCGGATACCCAAAGCTTTG 59.544 55.000 28.69 28.69 37.90 2.77
144 145 1.029947 CGGCGGATACCCAAAGCTTT 61.030 55.000 5.69 5.69 0.00 3.51
145 146 1.451387 CGGCGGATACCCAAAGCTT 60.451 57.895 0.00 0.00 0.00 3.74
146 147 2.189521 CGGCGGATACCCAAAGCT 59.810 61.111 0.00 0.00 0.00 3.74
147 148 2.900337 CCGGCGGATACCCAAAGC 60.900 66.667 24.41 0.00 0.00 3.51
148 149 2.900337 GCCGGCGGATACCCAAAG 60.900 66.667 33.44 0.00 0.00 2.77
149 150 4.841861 CGCCGGCGGATACCCAAA 62.842 66.667 40.50 0.00 35.56 3.28
153 154 4.289245 TTAGCGCCGGCGGATACC 62.289 66.667 45.81 30.39 46.35 2.73
154 155 2.688526 TTCTTAGCGCCGGCGGATAC 62.689 60.000 45.81 30.77 46.35 2.24
155 156 1.812686 ATTCTTAGCGCCGGCGGATA 61.813 55.000 45.81 28.12 46.35 2.59
156 157 2.660258 AATTCTTAGCGCCGGCGGAT 62.660 55.000 45.81 29.19 46.35 4.18
157 158 2.862674 AAATTCTTAGCGCCGGCGGA 62.863 55.000 45.81 32.58 46.35 5.54
158 159 1.155424 TAAATTCTTAGCGCCGGCGG 61.155 55.000 45.81 30.87 46.35 6.13
159 160 0.232303 CTAAATTCTTAGCGCCGGCG 59.768 55.000 43.13 43.13 46.35 6.46
160 161 0.586802 CCTAAATTCTTAGCGCCGGC 59.413 55.000 19.07 19.07 34.29 6.13
161 162 1.202604 TCCCTAAATTCTTAGCGCCGG 60.203 52.381 2.29 0.00 34.29 6.13
162 163 2.234300 TCCCTAAATTCTTAGCGCCG 57.766 50.000 2.29 0.00 34.29 6.46
163 164 3.275999 TGTTCCCTAAATTCTTAGCGCC 58.724 45.455 2.29 0.00 34.29 6.53
164 165 5.163652 ACAATGTTCCCTAAATTCTTAGCGC 60.164 40.000 0.00 0.00 34.29 5.92
165 166 6.436843 ACAATGTTCCCTAAATTCTTAGCG 57.563 37.500 0.00 0.00 34.29 4.26
170 171 8.621286 CGCTTATTACAATGTTCCCTAAATTCT 58.379 33.333 0.00 0.00 0.00 2.40
171 172 8.617809 TCGCTTATTACAATGTTCCCTAAATTC 58.382 33.333 0.00 0.00 0.00 2.17
172 173 8.514330 TCGCTTATTACAATGTTCCCTAAATT 57.486 30.769 0.00 0.00 0.00 1.82
173 174 7.773690 ACTCGCTTATTACAATGTTCCCTAAAT 59.226 33.333 0.00 0.00 0.00 1.40
174 175 7.107542 ACTCGCTTATTACAATGTTCCCTAAA 58.892 34.615 0.00 0.00 0.00 1.85
175 176 6.646267 ACTCGCTTATTACAATGTTCCCTAA 58.354 36.000 0.00 0.00 0.00 2.69
176 177 6.229936 ACTCGCTTATTACAATGTTCCCTA 57.770 37.500 0.00 0.00 0.00 3.53
177 178 5.099042 ACTCGCTTATTACAATGTTCCCT 57.901 39.130 0.00 0.00 0.00 4.20
178 179 6.913873 TTACTCGCTTATTACAATGTTCCC 57.086 37.500 0.00 0.00 0.00 3.97
179 180 7.376072 GCAATTACTCGCTTATTACAATGTTCC 59.624 37.037 0.00 0.00 0.00 3.62
180 181 7.376072 GGCAATTACTCGCTTATTACAATGTTC 59.624 37.037 0.00 0.00 0.00 3.18
181 182 7.148154 TGGCAATTACTCGCTTATTACAATGTT 60.148 33.333 0.00 0.00 0.00 2.71
182 183 6.317642 TGGCAATTACTCGCTTATTACAATGT 59.682 34.615 0.00 0.00 0.00 2.71
183 184 6.724263 TGGCAATTACTCGCTTATTACAATG 58.276 36.000 0.00 0.00 0.00 2.82
184 185 6.017109 CCTGGCAATTACTCGCTTATTACAAT 60.017 38.462 0.00 0.00 0.00 2.71
185 186 5.295787 CCTGGCAATTACTCGCTTATTACAA 59.704 40.000 0.00 0.00 0.00 2.41
186 187 4.814234 CCTGGCAATTACTCGCTTATTACA 59.186 41.667 0.00 0.00 0.00 2.41
187 188 4.319549 GCCTGGCAATTACTCGCTTATTAC 60.320 45.833 15.17 0.00 0.00 1.89
188 189 3.813166 GCCTGGCAATTACTCGCTTATTA 59.187 43.478 15.17 0.00 0.00 0.98
189 190 2.618709 GCCTGGCAATTACTCGCTTATT 59.381 45.455 15.17 0.00 0.00 1.40
190 191 2.222027 GCCTGGCAATTACTCGCTTAT 58.778 47.619 15.17 0.00 0.00 1.73
191 192 1.663695 GCCTGGCAATTACTCGCTTA 58.336 50.000 15.17 0.00 0.00 3.09
192 193 1.032114 GGCCTGGCAATTACTCGCTT 61.032 55.000 22.05 0.00 0.00 4.68
193 194 1.452108 GGCCTGGCAATTACTCGCT 60.452 57.895 22.05 0.00 0.00 4.93
194 195 2.823829 CGGCCTGGCAATTACTCGC 61.824 63.158 22.05 0.00 0.00 5.03
195 196 1.449601 ACGGCCTGGCAATTACTCG 60.450 57.895 22.05 14.86 0.00 4.18
196 197 0.392461 TCACGGCCTGGCAATTACTC 60.392 55.000 22.05 0.00 0.00 2.59
197 198 0.255890 ATCACGGCCTGGCAATTACT 59.744 50.000 22.05 0.00 0.00 2.24
198 199 0.381801 CATCACGGCCTGGCAATTAC 59.618 55.000 22.05 0.93 0.00 1.89
199 200 0.034574 ACATCACGGCCTGGCAATTA 60.035 50.000 22.05 3.09 0.00 1.40
200 201 1.304381 ACATCACGGCCTGGCAATT 60.304 52.632 22.05 0.00 0.00 2.32
201 202 2.048023 CACATCACGGCCTGGCAAT 61.048 57.895 22.05 4.32 0.00 3.56
202 203 2.672651 CACATCACGGCCTGGCAA 60.673 61.111 22.05 2.73 0.00 4.52
203 204 3.952508 ACACATCACGGCCTGGCA 61.953 61.111 22.05 0.00 0.00 4.92
204 205 3.434319 CACACATCACGGCCTGGC 61.434 66.667 11.05 11.05 0.00 4.85
205 206 1.600636 AACACACATCACGGCCTGG 60.601 57.895 0.00 0.00 0.00 4.45
206 207 1.575922 CAACACACATCACGGCCTG 59.424 57.895 0.00 0.00 0.00 4.85
207 208 1.600636 CCAACACACATCACGGCCT 60.601 57.895 0.00 0.00 0.00 5.19
208 209 2.625823 CCCAACACACATCACGGCC 61.626 63.158 0.00 0.00 0.00 6.13
209 210 1.852067 GACCCAACACACATCACGGC 61.852 60.000 0.00 0.00 0.00 5.68
210 211 0.533978 TGACCCAACACACATCACGG 60.534 55.000 0.00 0.00 0.00 4.94
211 212 0.867746 CTGACCCAACACACATCACG 59.132 55.000 0.00 0.00 0.00 4.35
212 213 1.238439 CCTGACCCAACACACATCAC 58.762 55.000 0.00 0.00 0.00 3.06
213 214 0.843309 ACCTGACCCAACACACATCA 59.157 50.000 0.00 0.00 0.00 3.07
214 215 1.072331 AGACCTGACCCAACACACATC 59.928 52.381 0.00 0.00 0.00 3.06
215 216 1.140312 AGACCTGACCCAACACACAT 58.860 50.000 0.00 0.00 0.00 3.21
216 217 0.916086 AAGACCTGACCCAACACACA 59.084 50.000 0.00 0.00 0.00 3.72
217 218 1.308998 CAAGACCTGACCCAACACAC 58.691 55.000 0.00 0.00 0.00 3.82
218 219 0.916086 ACAAGACCTGACCCAACACA 59.084 50.000 0.00 0.00 0.00 3.72
219 220 2.876550 GTTACAAGACCTGACCCAACAC 59.123 50.000 0.00 0.00 0.00 3.32
220 221 2.506231 TGTTACAAGACCTGACCCAACA 59.494 45.455 0.00 0.00 0.00 3.33
221 222 2.876550 GTGTTACAAGACCTGACCCAAC 59.123 50.000 0.00 0.00 0.00 3.77
222 223 2.775384 AGTGTTACAAGACCTGACCCAA 59.225 45.455 0.00 0.00 0.00 4.12
223 224 2.367567 GAGTGTTACAAGACCTGACCCA 59.632 50.000 0.00 0.00 0.00 4.51
224 225 2.289506 GGAGTGTTACAAGACCTGACCC 60.290 54.545 0.00 0.00 0.00 4.46
225 226 2.367567 TGGAGTGTTACAAGACCTGACC 59.632 50.000 0.00 0.00 0.00 4.02
226 227 3.746045 TGGAGTGTTACAAGACCTGAC 57.254 47.619 0.00 0.00 0.00 3.51
227 228 4.764050 TTTGGAGTGTTACAAGACCTGA 57.236 40.909 0.00 0.00 0.00 3.86
228 229 4.638421 TGTTTTGGAGTGTTACAAGACCTG 59.362 41.667 0.00 0.00 32.55 4.00
229 230 4.638865 GTGTTTTGGAGTGTTACAAGACCT 59.361 41.667 0.00 0.00 32.55 3.85
230 231 4.638865 AGTGTTTTGGAGTGTTACAAGACC 59.361 41.667 0.00 0.00 32.55 3.85
231 232 5.585047 AGAGTGTTTTGGAGTGTTACAAGAC 59.415 40.000 0.00 0.00 33.70 3.01
232 233 5.741011 AGAGTGTTTTGGAGTGTTACAAGA 58.259 37.500 0.00 0.00 0.00 3.02
233 234 7.095187 GGATAGAGTGTTTTGGAGTGTTACAAG 60.095 40.741 0.00 0.00 0.00 3.16
234 235 6.708949 GGATAGAGTGTTTTGGAGTGTTACAA 59.291 38.462 0.00 0.00 0.00 2.41
235 236 6.042781 AGGATAGAGTGTTTTGGAGTGTTACA 59.957 38.462 0.00 0.00 0.00 2.41
236 237 6.465084 AGGATAGAGTGTTTTGGAGTGTTAC 58.535 40.000 0.00 0.00 0.00 2.50
237 238 6.681729 AGGATAGAGTGTTTTGGAGTGTTA 57.318 37.500 0.00 0.00 0.00 2.41
238 239 5.568620 AGGATAGAGTGTTTTGGAGTGTT 57.431 39.130 0.00 0.00 0.00 3.32
239 240 5.308237 AGAAGGATAGAGTGTTTTGGAGTGT 59.692 40.000 0.00 0.00 0.00 3.55
240 241 5.799213 AGAAGGATAGAGTGTTTTGGAGTG 58.201 41.667 0.00 0.00 0.00 3.51
241 242 5.544176 TGAGAAGGATAGAGTGTTTTGGAGT 59.456 40.000 0.00 0.00 0.00 3.85
242 243 6.042638 TGAGAAGGATAGAGTGTTTTGGAG 57.957 41.667 0.00 0.00 0.00 3.86
243 244 6.627087 ATGAGAAGGATAGAGTGTTTTGGA 57.373 37.500 0.00 0.00 0.00 3.53
244 245 7.693969 AAATGAGAAGGATAGAGTGTTTTGG 57.306 36.000 0.00 0.00 0.00 3.28
265 266 9.538508 GGCAAAAGATTTGCTCATCTATTAAAT 57.461 29.630 22.59 0.00 44.36 1.40
266 267 8.752187 AGGCAAAAGATTTGCTCATCTATTAAA 58.248 29.630 22.59 0.00 44.36 1.52
267 268 8.297470 AGGCAAAAGATTTGCTCATCTATTAA 57.703 30.769 22.59 0.00 44.36 1.40
268 269 7.776969 AGAGGCAAAAGATTTGCTCATCTATTA 59.223 33.333 22.59 0.00 44.36 0.98
269 270 6.606395 AGAGGCAAAAGATTTGCTCATCTATT 59.394 34.615 22.59 5.57 44.36 1.73
270 271 6.039493 CAGAGGCAAAAGATTTGCTCATCTAT 59.961 38.462 22.59 9.48 44.36 1.98
271 272 5.356190 CAGAGGCAAAAGATTTGCTCATCTA 59.644 40.000 22.59 0.00 44.36 1.98
272 273 4.158025 CAGAGGCAAAAGATTTGCTCATCT 59.842 41.667 22.59 19.44 44.36 2.90
273 274 4.082354 ACAGAGGCAAAAGATTTGCTCATC 60.082 41.667 22.59 18.03 44.36 2.92
274 275 3.830755 ACAGAGGCAAAAGATTTGCTCAT 59.169 39.130 22.59 12.13 44.36 2.90
275 276 3.225104 ACAGAGGCAAAAGATTTGCTCA 58.775 40.909 22.59 0.00 44.36 4.26
276 277 3.930634 ACAGAGGCAAAAGATTTGCTC 57.069 42.857 22.59 17.85 44.36 4.26
277 278 4.625028 GAAACAGAGGCAAAAGATTTGCT 58.375 39.130 22.59 11.85 44.36 3.91
278 279 3.426525 CGAAACAGAGGCAAAAGATTTGC 59.573 43.478 17.18 17.18 44.22 3.68
279 280 4.858935 TCGAAACAGAGGCAAAAGATTTG 58.141 39.130 0.00 0.00 0.00 2.32
280 281 5.514274 TTCGAAACAGAGGCAAAAGATTT 57.486 34.783 0.00 0.00 0.00 2.17
281 282 5.514274 TTTCGAAACAGAGGCAAAAGATT 57.486 34.783 6.47 0.00 0.00 2.40
282 283 5.514274 TTTTCGAAACAGAGGCAAAAGAT 57.486 34.783 10.79 0.00 0.00 2.40
283 284 4.974368 TTTTCGAAACAGAGGCAAAAGA 57.026 36.364 10.79 0.00 0.00 2.52
304 305 1.797348 CGGCTGTCTTGCGTTGTTTTT 60.797 47.619 0.00 0.00 0.00 1.94
305 306 0.248458 CGGCTGTCTTGCGTTGTTTT 60.248 50.000 0.00 0.00 0.00 2.43
306 307 1.092921 TCGGCTGTCTTGCGTTGTTT 61.093 50.000 0.00 0.00 0.00 2.83
307 308 1.498865 CTCGGCTGTCTTGCGTTGTT 61.499 55.000 0.00 0.00 0.00 2.83
308 309 1.956170 CTCGGCTGTCTTGCGTTGT 60.956 57.895 0.00 0.00 0.00 3.32
309 310 2.856032 CTCGGCTGTCTTGCGTTG 59.144 61.111 0.00 0.00 0.00 4.10
310 311 3.044305 GCTCGGCTGTCTTGCGTT 61.044 61.111 0.00 0.00 0.00 4.84
311 312 4.299547 TGCTCGGCTGTCTTGCGT 62.300 61.111 0.00 0.00 0.00 5.24
316 317 2.356313 CGTTGTGCTCGGCTGTCT 60.356 61.111 0.00 0.00 0.00 3.41
328 329 1.148310 GTCTACACAGCATGCGTTGT 58.852 50.000 24.67 24.67 42.53 3.32
336 337 0.038251 CGCTCAAGGTCTACACAGCA 60.038 55.000 0.00 0.00 0.00 4.41
354 355 3.317150 TCAAGCACTGACTCATGTTACG 58.683 45.455 0.00 0.00 0.00 3.18
369 370 1.659233 CCAATGTTGCGGTCAAGCA 59.341 52.632 0.00 0.00 46.54 3.91
390 391 1.712977 CTCGGCTCTCTTGCATTGCC 61.713 60.000 6.12 0.00 40.14 4.52
409 410 1.577328 ATGTGCTGTTAGCCGTGTGC 61.577 55.000 0.00 0.00 41.51 4.57
410 411 0.874390 AATGTGCTGTTAGCCGTGTG 59.126 50.000 0.00 0.00 41.51 3.82
413 414 0.888736 TGCAATGTGCTGTTAGCCGT 60.889 50.000 1.43 0.00 45.31 5.68
414 415 0.240678 TTGCAATGTGCTGTTAGCCG 59.759 50.000 0.00 0.00 45.31 5.52
415 416 1.000385 TGTTGCAATGTGCTGTTAGCC 60.000 47.619 0.59 0.00 45.31 3.93
416 417 2.287788 ACTGTTGCAATGTGCTGTTAGC 60.288 45.455 0.59 0.00 45.31 3.09
417 418 3.003585 TGACTGTTGCAATGTGCTGTTAG 59.996 43.478 0.59 0.00 45.31 2.34
418 419 2.948315 TGACTGTTGCAATGTGCTGTTA 59.052 40.909 0.59 0.00 45.31 2.41
419 420 1.750206 TGACTGTTGCAATGTGCTGTT 59.250 42.857 0.59 0.00 45.31 3.16
420 421 1.335810 CTGACTGTTGCAATGTGCTGT 59.664 47.619 0.59 0.00 45.31 4.40
421 422 1.605232 TCTGACTGTTGCAATGTGCTG 59.395 47.619 0.59 0.00 45.31 4.41
422 423 1.971481 TCTGACTGTTGCAATGTGCT 58.029 45.000 0.59 0.00 45.31 4.40
423 424 2.780065 TTCTGACTGTTGCAATGTGC 57.220 45.000 0.59 0.00 45.29 4.57
424 425 3.483196 CGTTTTCTGACTGTTGCAATGTG 59.517 43.478 0.59 0.00 0.00 3.21
425 426 3.694734 CGTTTTCTGACTGTTGCAATGT 58.305 40.909 0.59 4.96 0.00 2.71
426 427 2.468777 GCGTTTTCTGACTGTTGCAATG 59.531 45.455 0.59 1.21 0.00 2.82
427 428 2.358898 AGCGTTTTCTGACTGTTGCAAT 59.641 40.909 0.59 0.00 0.00 3.56
428 429 1.742831 AGCGTTTTCTGACTGTTGCAA 59.257 42.857 0.00 0.00 0.00 4.08
429 430 1.063912 CAGCGTTTTCTGACTGTTGCA 59.936 47.619 0.00 0.00 36.19 4.08
562 585 1.593006 AGACTGTTGCTTCGTTGTTCG 59.407 47.619 0.00 0.00 41.41 3.95
627 654 2.105006 ACACCTCAGATGCATCACAC 57.895 50.000 27.81 1.90 0.00 3.82
641 668 1.528309 CAAGCGGAACCCAACACCT 60.528 57.895 0.00 0.00 0.00 4.00
642 669 3.039134 CAAGCGGAACCCAACACC 58.961 61.111 0.00 0.00 0.00 4.16
643 670 2.193536 AGCAAGCGGAACCCAACAC 61.194 57.895 0.00 0.00 0.00 3.32
671 698 3.123620 CAGCAGCTCGTTGCCTCC 61.124 66.667 0.00 0.00 45.18 4.30
808 842 0.730155 GTGATACGCACGTGTCCGAA 60.730 55.000 20.05 2.13 37.83 4.30
809 843 1.154169 GTGATACGCACGTGTCCGA 60.154 57.895 20.05 6.42 37.83 4.55
821 855 1.884579 TCGGGATTAGCCTCGTGATAC 59.115 52.381 0.00 0.00 36.66 2.24
822 856 1.884579 GTCGGGATTAGCCTCGTGATA 59.115 52.381 0.00 0.00 36.66 2.15
823 857 0.674534 GTCGGGATTAGCCTCGTGAT 59.325 55.000 0.00 0.00 36.66 3.06
824 858 1.721664 CGTCGGGATTAGCCTCGTGA 61.722 60.000 0.00 0.00 36.66 4.35
825 859 1.299165 CGTCGGGATTAGCCTCGTG 60.299 63.158 0.00 0.00 36.66 4.35
826 860 1.751927 ACGTCGGGATTAGCCTCGT 60.752 57.895 0.00 0.00 36.66 4.18
827 861 1.299165 CACGTCGGGATTAGCCTCG 60.299 63.158 0.00 0.00 36.66 4.63
828 862 1.591863 GCACGTCGGGATTAGCCTC 60.592 63.158 0.00 0.00 36.66 4.70
829 863 2.499685 GCACGTCGGGATTAGCCT 59.500 61.111 0.00 0.00 36.66 4.58
840 874 1.207593 GTGCTCAATGTGGCACGTC 59.792 57.895 13.63 0.83 46.87 4.34
841 875 3.343972 GTGCTCAATGTGGCACGT 58.656 55.556 13.77 10.33 46.87 4.49
854 889 4.540153 AGCAAGAACACACGTGCT 57.460 50.000 17.22 0.39 46.78 4.40
1012 1047 3.764466 CGAGAGCCGAGGCCTTGT 61.764 66.667 19.14 0.35 43.17 3.16
1030 1065 2.096596 GCAGCAATGAGGAGTCTGC 58.903 57.895 0.00 0.00 42.46 4.26
1042 1077 2.549064 TTCACTAGCAGAAGCAGCAA 57.451 45.000 0.00 0.00 45.49 3.91
1046 1081 4.281941 TCTCTCTTTTCACTAGCAGAAGCA 59.718 41.667 0.00 0.00 45.49 3.91
1074 1112 1.375140 CTTTCAGGAGCAGCGCTGA 60.375 57.895 40.21 16.50 39.88 4.26
1096 1134 5.650266 ACCATTGTTGCCATCGTATTTCTTA 59.350 36.000 0.00 0.00 0.00 2.10
1098 1136 4.016444 ACCATTGTTGCCATCGTATTTCT 58.984 39.130 0.00 0.00 0.00 2.52
1099 1137 4.142491 TGACCATTGTTGCCATCGTATTTC 60.142 41.667 0.00 0.00 0.00 2.17
1100 1138 3.761218 TGACCATTGTTGCCATCGTATTT 59.239 39.130 0.00 0.00 0.00 1.40
1103 1148 2.027653 TCTGACCATTGTTGCCATCGTA 60.028 45.455 0.00 0.00 0.00 3.43
1162 1207 0.693049 GAGCTTCTTGTTCCTCCCCA 59.307 55.000 0.00 0.00 0.00 4.96
1253 1298 1.023513 GGGAGACTCACATGTGCAGC 61.024 60.000 21.38 11.63 0.00 5.25
1279 1324 3.827898 GTGACCGAGGGAGAGGCG 61.828 72.222 0.00 0.00 0.00 5.52
1280 1325 3.462678 GGTGACCGAGGGAGAGGC 61.463 72.222 0.00 0.00 0.00 4.70
1281 1326 2.055042 CAGGTGACCGAGGGAGAGG 61.055 68.421 0.00 0.00 0.00 3.69
1292 1337 1.943507 GCAGAGGAAAGAGCAGGTGAC 60.944 57.143 0.00 0.00 0.00 3.67
1296 1341 1.002888 TGAAGCAGAGGAAAGAGCAGG 59.997 52.381 0.00 0.00 0.00 4.85
1311 1356 2.175878 TCAGAGCTCCAAGTTGAAGC 57.824 50.000 10.93 5.87 0.00 3.86
1312 1357 3.497640 CAGTTCAGAGCTCCAAGTTGAAG 59.502 47.826 10.93 0.00 0.00 3.02
1313 1358 3.134623 TCAGTTCAGAGCTCCAAGTTGAA 59.865 43.478 10.93 10.61 0.00 2.69
1314 1359 2.700371 TCAGTTCAGAGCTCCAAGTTGA 59.300 45.455 10.93 4.11 0.00 3.18
1316 1361 2.546795 CGTCAGTTCAGAGCTCCAAGTT 60.547 50.000 10.93 0.00 0.00 2.66
1834 1887 2.660258 AAGTGCTCACCGTGTCCACC 62.660 60.000 15.70 4.42 0.00 4.61
1872 1925 1.604185 GCCAGCGAGGTGATGATAGAC 60.604 57.143 3.61 0.00 40.61 2.59
1936 1989 3.877559 CACCACCAAGATCTGCTCAATA 58.122 45.455 0.00 0.00 0.00 1.90
1937 1990 2.719739 CACCACCAAGATCTGCTCAAT 58.280 47.619 0.00 0.00 0.00 2.57
2004 2057 5.304778 TGTCGATGAAGAAAGAAACCATGA 58.695 37.500 0.00 0.00 0.00 3.07
2154 2207 6.535508 GCGAGTGAATAAGACTAATCCAAACT 59.464 38.462 0.00 0.00 0.00 2.66
2160 2213 6.363896 GCCTAAGCGAGTGAATAAGACTAATC 59.636 42.308 0.00 0.00 0.00 1.75
2178 2231 2.884894 ACACCGTACATAGCCTAAGC 57.115 50.000 0.00 0.00 40.32 3.09
2225 2306 8.480643 AATAGAGTGAAGTCTGATTTAAACCG 57.519 34.615 0.00 0.00 0.00 4.44
2390 2478 9.010029 TGCGAAAAGAGATTTATTTTCCTTAGT 57.990 29.630 9.68 0.00 39.96 2.24
2422 2510 5.404946 CATTGTGCGAGATTTCTTTTCCAT 58.595 37.500 0.00 0.00 0.00 3.41
2483 2742 7.449704 AGAGAAAAATTGGTCTTGCTTAGTGAT 59.550 33.333 0.00 0.00 0.00 3.06
2516 2776 8.629158 TGAAACTACTGCATAATGTTTGAGTTT 58.371 29.630 10.49 7.21 37.32 2.66
2534 2794 5.121925 GGGACGAAAAAGGAGATGAAACTAC 59.878 44.000 0.00 0.00 0.00 2.73
2535 2795 5.012768 AGGGACGAAAAAGGAGATGAAACTA 59.987 40.000 0.00 0.00 0.00 2.24
2542 2802 3.844804 AGGTTAGGGACGAAAAAGGAGAT 59.155 43.478 0.00 0.00 0.00 2.75
2562 2822 2.170817 GGTTTGCCCTAGTCTCCTAAGG 59.829 54.545 0.00 0.00 0.00 2.69
2564 2824 3.200958 AGGTTTGCCCTAGTCTCCTAA 57.799 47.619 0.00 0.00 43.87 2.69
2569 2829 0.992695 GGGAAGGTTTGCCCTAGTCT 59.007 55.000 0.00 0.00 45.47 3.24
2594 2854 4.913126 GGACTCGCCGATGAAGTT 57.087 55.556 0.00 0.00 0.00 2.66
2605 2865 0.179134 GGAGGTGAATCACGGACTCG 60.179 60.000 7.35 0.00 43.02 4.18
2669 3191 4.108570 TGAATTCTTCAGTTAGGGGCCTA 58.891 43.478 0.84 0.00 34.08 3.93
2691 3213 2.088423 TGGCGAAGTGTTTGAAGTGTT 58.912 42.857 0.00 0.00 0.00 3.32
2729 3256 6.367969 GCAACTGCATTTGAATTCTCTTGAAT 59.632 34.615 19.89 0.00 41.61 2.57
2751 3278 2.419159 CCGTCAGATGGAGATCTTGCAA 60.419 50.000 1.83 0.00 36.75 4.08
2762 3289 4.530857 GTCCCGGCCGTCAGATGG 62.531 72.222 26.12 17.10 0.00 3.51
2835 3363 8.781184 CGACATGACGAAGACTATCAGTCGTT 62.781 46.154 12.27 0.00 46.02 3.85
2852 3380 2.159747 GGAAAGTAAACGGCGACATGAC 60.160 50.000 16.62 2.43 0.00 3.06
2862 3390 3.317603 TCCCTTACCGGAAAGTAAACG 57.682 47.619 9.46 0.00 32.02 3.60
2950 3478 6.426646 ACAGATTAGTTGTCTTCTCTTGGT 57.573 37.500 0.00 0.00 0.00 3.67
2961 3489 7.827729 GGTTCAACCCTATTACAGATTAGTTGT 59.172 37.037 0.00 0.00 35.87 3.32
3004 3532 3.414272 GCAATACAGAGCCAGCCG 58.586 61.111 0.00 0.00 0.00 5.52
3034 3562 7.487822 TGGGGAATTTGTATTAGATTTTGCA 57.512 32.000 0.00 0.00 0.00 4.08
3035 3563 8.040727 ACTTGGGGAATTTGTATTAGATTTTGC 58.959 33.333 0.00 0.00 0.00 3.68
3041 3569 7.179516 GGGAAAACTTGGGGAATTTGTATTAGA 59.820 37.037 0.00 0.00 0.00 2.10
3053 3581 0.703056 TCAGGGGGAAAACTTGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
3063 3591 0.991920 AAGAGCGAATTCAGGGGGAA 59.008 50.000 6.22 0.00 40.46 3.97
3065 3593 0.035056 ACAAGAGCGAATTCAGGGGG 60.035 55.000 6.22 0.00 0.00 5.40
3069 3597 5.122239 TCCAATAACACAAGAGCGAATTCAG 59.878 40.000 6.22 0.00 0.00 3.02
3070 3598 5.000591 TCCAATAACACAAGAGCGAATTCA 58.999 37.500 6.22 0.00 0.00 2.57
3076 3604 3.997021 ACTTCTCCAATAACACAAGAGCG 59.003 43.478 0.00 0.00 0.00 5.03
3087 3615 7.110155 CCTAAGGTTTAAGCACTTCTCCAATA 58.890 38.462 0.00 0.00 0.00 1.90
3130 3658 4.747108 CCAATCGCTCTAGATACCACTTTG 59.253 45.833 0.00 0.00 0.00 2.77
3167 3695 1.886777 GCTCGCCTCCAGATCTTGC 60.887 63.158 0.00 0.00 0.00 4.01
3169 3697 0.177604 CTTGCTCGCCTCCAGATCTT 59.822 55.000 0.00 0.00 0.00 2.40
3198 3726 3.117851 GGAGGAGGATTTTTACCAGGGAG 60.118 52.174 0.00 0.00 0.00 4.30
3211 3739 2.158579 GGAGAACTAGACGGAGGAGGAT 60.159 54.545 0.00 0.00 0.00 3.24
3277 3805 0.036671 CCCGACCACTTCTAACACCC 60.037 60.000 0.00 0.00 0.00 4.61
3334 3862 1.306226 GCTAGAGGAGGGTGGGTGT 60.306 63.158 0.00 0.00 0.00 4.16
3347 3875 2.671070 GCCCTGGTGCTTGCTAGA 59.329 61.111 0.00 0.00 0.00 2.43
3348 3876 2.821366 CGCCCTGGTGCTTGCTAG 60.821 66.667 5.77 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.