Multiple sequence alignment - TraesCS1B01G129100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G129100 chr1B 100.000 2417 0 0 1 2417 159161407 159163823 0.000000e+00 4464.0
1 TraesCS1B01G129100 chr1B 98.235 170 3 0 583 752 159161808 159161977 5.050000e-77 298.0
2 TraesCS1B01G129100 chr1B 94.054 185 9 2 583 765 538473319 538473135 1.830000e-71 279.0
3 TraesCS1B01G129100 chr1B 97.674 43 1 0 2107 2149 578093562 578093520 9.270000e-10 75.0
4 TraesCS1B01G129100 chr1A 90.614 1108 68 16 756 1834 110160569 110159469 0.000000e+00 1437.0
5 TraesCS1B01G129100 chr1A 94.583 240 8 3 2156 2390 110159197 110158958 1.370000e-97 366.0
6 TraesCS1B01G129100 chr1A 91.630 227 16 2 1688 1912 110159445 110159220 6.490000e-81 311.0
7 TraesCS1B01G129100 chr1A 89.764 127 11 2 1919 2044 354304736 354304611 6.920000e-36 161.0
8 TraesCS1B01G129100 chr1A 89.600 125 13 0 1924 2048 490084771 490084895 2.490000e-35 159.0
9 TraesCS1B01G129100 chr1A 94.828 58 3 0 2092 2149 213252988 213253045 9.200000e-15 91.6
10 TraesCS1B01G129100 chr5D 89.960 757 62 7 751 1497 324779539 324780291 0.000000e+00 965.0
11 TraesCS1B01G129100 chr5D 80.889 225 22 12 1533 1738 324782019 324782241 8.950000e-35 158.0
12 TraesCS1B01G129100 chr5D 91.489 47 4 0 2107 2153 135243840 135243794 5.580000e-07 65.8
13 TraesCS1B01G129100 chr5B 89.737 760 62 8 753 1497 377207448 377208206 0.000000e+00 957.0
14 TraesCS1B01G129100 chr5B 95.812 573 21 3 1 571 398622515 398621944 0.000000e+00 922.0
15 TraesCS1B01G129100 chr5B 92.740 551 31 6 2 544 144584817 144585366 0.000000e+00 787.0
16 TraesCS1B01G129100 chr5B 96.471 170 6 0 583 752 398622113 398621944 5.090000e-72 281.0
17 TraesCS1B01G129100 chr5B 96.450 169 6 0 585 753 203359448 203359280 1.830000e-71 279.0
18 TraesCS1B01G129100 chr5B 91.667 120 9 1 1919 2038 425086904 425087022 5.350000e-37 165.0
19 TraesCS1B01G129100 chr5B 96.552 58 2 0 2092 2149 494729506 494729449 1.980000e-16 97.1
20 TraesCS1B01G129100 chr5B 95.000 60 3 0 2092 2151 596909706 596909647 7.110000e-16 95.3
21 TraesCS1B01G129100 chr5B 94.643 56 3 0 2092 2147 606025761 606025706 1.190000e-13 87.9
22 TraesCS1B01G129100 chr7B 95.979 572 22 1 1 571 613639577 613640148 0.000000e+00 928.0
23 TraesCS1B01G129100 chr7B 93.548 62 4 0 2092 2153 22889982 22890043 2.560000e-15 93.5
24 TraesCS1B01G129100 chr2B 95.660 576 24 1 1 575 130013314 130012739 0.000000e+00 924.0
25 TraesCS1B01G129100 chr2B 94.828 580 28 2 1 578 698001476 698002055 0.000000e+00 904.0
26 TraesCS1B01G129100 chr2B 94.415 573 30 2 1 572 742727274 742726703 0.000000e+00 880.0
27 TraesCS1B01G129100 chr2B 96.471 170 6 0 583 752 224841570 224841401 5.090000e-72 281.0
28 TraesCS1B01G129100 chr2B 92.241 116 9 0 1923 2038 467863060 467863175 5.350000e-37 165.0
29 TraesCS1B01G129100 chr5A 88.976 762 55 16 754 1497 423030157 423030907 0.000000e+00 915.0
30 TraesCS1B01G129100 chr5A 91.736 121 9 1 1929 2048 309202008 309202128 1.490000e-37 167.0
31 TraesCS1B01G129100 chr4B 95.105 572 24 4 1 571 629371266 629371834 0.000000e+00 898.0
32 TraesCS1B01G129100 chr4B 94.316 563 30 2 1 562 17057987 17057426 0.000000e+00 861.0
33 TraesCS1B01G129100 chr4B 96.450 169 6 0 583 751 28687803 28687971 1.830000e-71 279.0
34 TraesCS1B01G129100 chr4B 92.982 114 7 1 1926 2038 195627845 195627958 5.350000e-37 165.0
35 TraesCS1B01G129100 chr4B 91.597 119 8 2 1921 2038 113961110 113961227 1.920000e-36 163.0
36 TraesCS1B01G129100 chr1D 94.526 548 23 3 751 1297 107614676 107614135 0.000000e+00 839.0
37 TraesCS1B01G129100 chr1D 91.902 531 27 6 1284 1798 107598766 107598236 0.000000e+00 728.0
38 TraesCS1B01G129100 chr1D 93.981 216 11 1 2153 2366 107598149 107597934 2.320000e-85 326.0
39 TraesCS1B01G129100 chr1D 91.667 120 9 1 1926 2044 411982273 411982154 5.350000e-37 165.0
40 TraesCS1B01G129100 chr1D 90.400 125 11 1 1921 2044 288702859 288702735 1.920000e-36 163.0
41 TraesCS1B01G129100 chr1D 90.909 121 10 1 1929 2048 11354616 11354736 6.920000e-36 161.0
42 TraesCS1B01G129100 chr1D 91.453 117 8 2 1924 2038 238940210 238940326 2.490000e-35 159.0
43 TraesCS1B01G129100 chr1D 94.118 68 2 1 1849 1914 107598234 107598167 4.250000e-18 102.0
44 TraesCS1B01G129100 chr1D 95.833 48 2 0 2102 2149 2116425 2116378 7.160000e-11 78.7
45 TraesCS1B01G129100 chr1D 90.000 60 4 2 2095 2152 259665850 259665791 2.580000e-10 76.8
46 TraesCS1B01G129100 chr1D 100.000 34 0 0 2116 2149 433981204 433981171 2.010000e-06 63.9
47 TraesCS1B01G129100 chr1D 100.000 34 0 0 2116 2149 434036190 434036157 2.010000e-06 63.9
48 TraesCS1B01G129100 chr6B 96.755 339 11 0 1 339 508146801 508146463 1.250000e-157 566.0
49 TraesCS1B01G129100 chr6B 95.942 345 13 1 228 571 19969555 19969899 2.100000e-155 558.0
50 TraesCS1B01G129100 chr6B 95.906 171 7 0 583 753 19969730 19969900 6.580000e-71 278.0
51 TraesCS1B01G129100 chr6B 94.915 59 3 0 2092 2150 538953901 538953959 2.560000e-15 93.5
52 TraesCS1B01G129100 chrUn 95.942 345 13 1 228 571 359047867 359048211 2.100000e-155 558.0
53 TraesCS1B01G129100 chrUn 95.906 171 7 0 583 753 359048042 359048212 6.580000e-71 278.0
54 TraesCS1B01G129100 chrUn 90.833 120 10 1 1926 2044 173546704 173546585 2.490000e-35 159.0
55 TraesCS1B01G129100 chrUn 90.083 121 11 1 1925 2044 358754083 358753963 3.220000e-34 156.0
56 TraesCS1B01G129100 chrUn 90.598 117 10 1 1929 2044 61801606 61801490 1.160000e-33 154.0
57 TraesCS1B01G129100 chrUn 91.228 114 9 1 1926 2038 303873098 303873211 1.160000e-33 154.0
58 TraesCS1B01G129100 chrUn 90.000 120 11 1 1926 2044 408256321 408256202 1.160000e-33 154.0
59 TraesCS1B01G129100 chrUn 89.831 118 11 1 1928 2044 99869011 99868894 1.500000e-32 150.0
60 TraesCS1B01G129100 chrUn 90.435 115 10 1 1931 2044 130470882 130470768 1.500000e-32 150.0
61 TraesCS1B01G129100 chrUn 89.831 118 11 1 1928 2044 159566796 159566679 1.500000e-32 150.0
62 TraesCS1B01G129100 chrUn 90.351 114 10 1 1926 2038 97388489 97388602 5.380000e-32 148.0
63 TraesCS1B01G129100 chrUn 95.349 43 2 0 2107 2149 20108415 20108457 4.310000e-08 69.4
64 TraesCS1B01G129100 chr3A 79.374 703 101 30 884 1546 601537569 601536871 2.830000e-124 455.0
65 TraesCS1B01G129100 chr3A 92.373 118 8 1 1922 2038 585605631 585605748 1.490000e-37 167.0
66 TraesCS1B01G129100 chr3A 91.129 124 9 2 1916 2038 649811828 649811950 1.490000e-37 167.0
67 TraesCS1B01G129100 chr3A 91.935 62 5 0 2092 2153 616474259 616474320 1.190000e-13 87.9
68 TraesCS1B01G129100 chr3B 78.769 650 105 23 886 1520 607415765 607416396 2.890000e-109 405.0
69 TraesCS1B01G129100 chr4A 97.059 170 5 0 583 752 704473877 704473708 1.090000e-73 287.0
70 TraesCS1B01G129100 chr7D 94.068 118 6 1 1922 2038 513817731 513817848 6.870000e-41 178.0
71 TraesCS1B01G129100 chr7A 92.373 118 7 2 1923 2038 320981166 320981283 1.490000e-37 167.0
72 TraesCS1B01G129100 chr7A 89.394 132 11 3 1916 2044 62993157 62993026 1.920000e-36 163.0
73 TraesCS1B01G129100 chr7A 94.737 57 3 0 2093 2149 526516756 526516812 3.310000e-14 89.8
74 TraesCS1B01G129100 chr4D 93.636 110 7 0 1929 2038 15371633 15371742 5.350000e-37 165.0
75 TraesCS1B01G129100 chr4D 92.424 66 5 0 2092 2157 81988180 81988115 7.110000e-16 95.3
76 TraesCS1B01G129100 chr4D 93.333 60 4 0 2092 2151 454780689 454780748 3.310000e-14 89.8
77 TraesCS1B01G129100 chr4D 89.655 58 4 2 2096 2153 81988236 81988291 3.330000e-09 73.1
78 TraesCS1B01G129100 chr4D 89.655 58 3 3 2093 2149 430882959 430882904 1.200000e-08 71.3
79 TraesCS1B01G129100 chr2D 92.982 114 7 1 1926 2038 224015365 224015478 5.350000e-37 165.0
80 TraesCS1B01G129100 chr2D 91.667 120 9 1 1926 2044 563625225 563625106 5.350000e-37 165.0
81 TraesCS1B01G129100 chr2D 92.063 63 5 0 2092 2154 33902278 33902340 3.310000e-14 89.8
82 TraesCS1B01G129100 chr2D 93.103 58 4 0 2092 2149 46927518 46927575 4.280000e-13 86.1
83 TraesCS1B01G129100 chr6D 92.241 116 7 2 1926 2039 439684867 439684752 1.920000e-36 163.0
84 TraesCS1B01G129100 chr6D 89.764 127 12 1 1926 2051 389700708 389700582 6.920000e-36 161.0
85 TraesCS1B01G129100 chr6D 92.105 114 8 1 1926 2038 31468027 31467914 2.490000e-35 159.0
86 TraesCS1B01G129100 chr6D 90.833 120 10 1 1926 2044 265779311 265779192 2.490000e-35 159.0
87 TraesCS1B01G129100 chr6D 92.727 110 8 0 1929 2038 302057022 302057131 2.490000e-35 159.0
88 TraesCS1B01G129100 chr6D 90.833 120 10 1 1926 2044 349141790 349141671 2.490000e-35 159.0
89 TraesCS1B01G129100 chr6D 92.105 114 8 1 1926 2038 355973688 355973801 2.490000e-35 159.0
90 TraesCS1B01G129100 chr6D 89.683 126 11 2 1921 2044 392897148 392897023 2.490000e-35 159.0
91 TraesCS1B01G129100 chr6D 92.105 114 8 1 1926 2038 417993070 417993183 2.490000e-35 159.0
92 TraesCS1B01G129100 chr6D 92.105 114 8 1 1926 2038 419319365 419319478 2.490000e-35 159.0
93 TraesCS1B01G129100 chr6D 90.164 122 10 2 1918 2038 367533947 367534067 8.950000e-35 158.0
94 TraesCS1B01G129100 chr6D 87.234 141 12 5 1910 2048 382579809 382579945 3.220000e-34 156.0
95 TraesCS1B01G129100 chr6D 88.976 127 13 1 1926 2051 444746645 444746519 3.220000e-34 156.0
96 TraesCS1B01G129100 chr6D 94.444 54 3 0 2096 2149 454801252 454801199 1.540000e-12 84.2
97 TraesCS1B01G129100 chr3D 96.000 50 2 0 2092 2141 87324690 87324739 5.540000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G129100 chr1B 159161407 159163823 2416 False 2381.000000 4464 99.117500 1 2417 2 chr1B.!!$F1 2416
1 TraesCS1B01G129100 chr1A 110158958 110160569 1611 True 704.666667 1437 92.275667 756 2390 3 chr1A.!!$R2 1634
2 TraesCS1B01G129100 chr5D 324779539 324782241 2702 False 561.500000 965 85.424500 751 1738 2 chr5D.!!$F1 987
3 TraesCS1B01G129100 chr5B 377207448 377208206 758 False 957.000000 957 89.737000 753 1497 1 chr5B.!!$F2 744
4 TraesCS1B01G129100 chr5B 144584817 144585366 549 False 787.000000 787 92.740000 2 544 1 chr5B.!!$F1 542
5 TraesCS1B01G129100 chr5B 398621944 398622515 571 True 601.500000 922 96.141500 1 752 2 chr5B.!!$R5 751
6 TraesCS1B01G129100 chr7B 613639577 613640148 571 False 928.000000 928 95.979000 1 571 1 chr7B.!!$F2 570
7 TraesCS1B01G129100 chr2B 130012739 130013314 575 True 924.000000 924 95.660000 1 575 1 chr2B.!!$R1 574
8 TraesCS1B01G129100 chr2B 698001476 698002055 579 False 904.000000 904 94.828000 1 578 1 chr2B.!!$F2 577
9 TraesCS1B01G129100 chr2B 742726703 742727274 571 True 880.000000 880 94.415000 1 572 1 chr2B.!!$R3 571
10 TraesCS1B01G129100 chr5A 423030157 423030907 750 False 915.000000 915 88.976000 754 1497 1 chr5A.!!$F2 743
11 TraesCS1B01G129100 chr4B 629371266 629371834 568 False 898.000000 898 95.105000 1 571 1 chr4B.!!$F4 570
12 TraesCS1B01G129100 chr4B 17057426 17057987 561 True 861.000000 861 94.316000 1 562 1 chr4B.!!$R1 561
13 TraesCS1B01G129100 chr1D 107614135 107614676 541 True 839.000000 839 94.526000 751 1297 1 chr1D.!!$R2 546
14 TraesCS1B01G129100 chr1D 107597934 107598766 832 True 385.333333 728 93.333667 1284 2366 3 chr1D.!!$R8 1082
15 TraesCS1B01G129100 chr3A 601536871 601537569 698 True 455.000000 455 79.374000 884 1546 1 chr3A.!!$R1 662
16 TraesCS1B01G129100 chr3B 607415765 607416396 631 False 405.000000 405 78.769000 886 1520 1 chr3B.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 642 0.040067 GTGGTGAAGCGAAAAGGCAG 60.04 55.0 0.0 0.0 34.64 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2391 4396 0.548031 CATGGTGTATGGCCTGAGGT 59.452 55.0 3.32 0.0 32.95 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 2.671619 CATCGTGCGGGGTTTGGT 60.672 61.111 0.00 0.00 0.00 3.67
305 306 8.648698 TGATGATAAGAAAGGGAAAATCACAA 57.351 30.769 0.00 0.00 0.00 3.33
457 467 2.282180 GCGAAAAGGCAGGTGGGA 60.282 61.111 0.00 0.00 0.00 4.37
458 468 2.335712 GCGAAAAGGCAGGTGGGAG 61.336 63.158 0.00 0.00 0.00 4.30
459 469 1.675641 CGAAAAGGCAGGTGGGAGG 60.676 63.158 0.00 0.00 0.00 4.30
460 470 1.304464 GAAAAGGCAGGTGGGAGGG 60.304 63.158 0.00 0.00 0.00 4.30
461 471 1.778383 AAAAGGCAGGTGGGAGGGA 60.778 57.895 0.00 0.00 0.00 4.20
462 472 1.793820 AAAAGGCAGGTGGGAGGGAG 61.794 60.000 0.00 0.00 0.00 4.30
463 473 2.713111 AAAGGCAGGTGGGAGGGAGA 62.713 60.000 0.00 0.00 0.00 3.71
464 474 3.403558 GGCAGGTGGGAGGGAGAC 61.404 72.222 0.00 0.00 0.00 3.36
465 475 3.775654 GCAGGTGGGAGGGAGACG 61.776 72.222 0.00 0.00 0.00 4.18
466 476 2.037367 CAGGTGGGAGGGAGACGA 59.963 66.667 0.00 0.00 0.00 4.20
467 477 1.609501 CAGGTGGGAGGGAGACGAA 60.610 63.158 0.00 0.00 0.00 3.85
468 478 1.157751 AGGTGGGAGGGAGACGAAA 59.842 57.895 0.00 0.00 0.00 3.46
469 479 0.252742 AGGTGGGAGGGAGACGAAAT 60.253 55.000 0.00 0.00 0.00 2.17
470 480 1.007963 AGGTGGGAGGGAGACGAAATA 59.992 52.381 0.00 0.00 0.00 1.40
471 481 1.835531 GGTGGGAGGGAGACGAAATAA 59.164 52.381 0.00 0.00 0.00 1.40
472 482 2.237893 GGTGGGAGGGAGACGAAATAAA 59.762 50.000 0.00 0.00 0.00 1.40
473 483 3.307904 GGTGGGAGGGAGACGAAATAAAA 60.308 47.826 0.00 0.00 0.00 1.52
474 484 3.688185 GTGGGAGGGAGACGAAATAAAAC 59.312 47.826 0.00 0.00 0.00 2.43
475 485 3.276857 GGGAGGGAGACGAAATAAAACC 58.723 50.000 0.00 0.00 0.00 3.27
476 486 3.307904 GGGAGGGAGACGAAATAAAACCA 60.308 47.826 0.00 0.00 0.00 3.67
477 487 4.329392 GGAGGGAGACGAAATAAAACCAA 58.671 43.478 0.00 0.00 0.00 3.67
478 488 4.155462 GGAGGGAGACGAAATAAAACCAAC 59.845 45.833 0.00 0.00 0.00 3.77
479 489 4.721132 AGGGAGACGAAATAAAACCAACA 58.279 39.130 0.00 0.00 0.00 3.33
480 490 5.134661 AGGGAGACGAAATAAAACCAACAA 58.865 37.500 0.00 0.00 0.00 2.83
481 491 5.595133 AGGGAGACGAAATAAAACCAACAAA 59.405 36.000 0.00 0.00 0.00 2.83
482 492 6.097129 AGGGAGACGAAATAAAACCAACAAAA 59.903 34.615 0.00 0.00 0.00 2.44
483 493 6.926826 GGGAGACGAAATAAAACCAACAAAAT 59.073 34.615 0.00 0.00 0.00 1.82
484 494 8.083462 GGGAGACGAAATAAAACCAACAAAATA 58.917 33.333 0.00 0.00 0.00 1.40
485 495 9.465985 GGAGACGAAATAAAACCAACAAAATAA 57.534 29.630 0.00 0.00 0.00 1.40
493 503 9.989869 AATAAAACCAACAAAATAAAACCAACG 57.010 25.926 0.00 0.00 0.00 4.10
494 504 7.668525 AAAACCAACAAAATAAAACCAACGA 57.331 28.000 0.00 0.00 0.00 3.85
495 505 7.668525 AAACCAACAAAATAAAACCAACGAA 57.331 28.000 0.00 0.00 0.00 3.85
496 506 7.668525 AACCAACAAAATAAAACCAACGAAA 57.331 28.000 0.00 0.00 0.00 3.46
497 507 7.297229 ACCAACAAAATAAAACCAACGAAAG 57.703 32.000 0.00 0.00 0.00 2.62
510 520 2.806608 ACGAAAGTAGTGAGGCGAAA 57.193 45.000 0.00 0.00 46.88 3.46
511 521 3.314541 ACGAAAGTAGTGAGGCGAAAT 57.685 42.857 0.00 0.00 46.88 2.17
512 522 4.445452 ACGAAAGTAGTGAGGCGAAATA 57.555 40.909 0.00 0.00 46.88 1.40
513 523 4.813027 ACGAAAGTAGTGAGGCGAAATAA 58.187 39.130 0.00 0.00 46.88 1.40
514 524 5.232463 ACGAAAGTAGTGAGGCGAAATAAA 58.768 37.500 0.00 0.00 46.88 1.40
515 525 5.697633 ACGAAAGTAGTGAGGCGAAATAAAA 59.302 36.000 0.00 0.00 46.88 1.52
516 526 6.013689 CGAAAGTAGTGAGGCGAAATAAAAC 58.986 40.000 0.00 0.00 0.00 2.43
517 527 5.874895 AAGTAGTGAGGCGAAATAAAACC 57.125 39.130 0.00 0.00 0.00 3.27
518 528 4.901868 AGTAGTGAGGCGAAATAAAACCA 58.098 39.130 0.00 0.00 0.00 3.67
519 529 4.935808 AGTAGTGAGGCGAAATAAAACCAG 59.064 41.667 0.00 0.00 0.00 4.00
520 530 2.488153 AGTGAGGCGAAATAAAACCAGC 59.512 45.455 0.00 0.00 0.00 4.85
521 531 2.227865 GTGAGGCGAAATAAAACCAGCA 59.772 45.455 0.00 0.00 0.00 4.41
522 532 2.887783 TGAGGCGAAATAAAACCAGCAA 59.112 40.909 0.00 0.00 0.00 3.91
523 533 3.319405 TGAGGCGAAATAAAACCAGCAAA 59.681 39.130 0.00 0.00 0.00 3.68
524 534 4.202161 TGAGGCGAAATAAAACCAGCAAAA 60.202 37.500 0.00 0.00 0.00 2.44
525 535 4.698575 AGGCGAAATAAAACCAGCAAAAA 58.301 34.783 0.00 0.00 0.00 1.94
543 553 4.888038 AAAAATAACCGGCGGACTATTC 57.112 40.909 35.78 0.00 0.00 1.75
544 554 3.547054 AAATAACCGGCGGACTATTCA 57.453 42.857 35.78 9.05 0.00 2.57
545 555 2.521105 ATAACCGGCGGACTATTCAC 57.479 50.000 35.78 0.00 0.00 3.18
546 556 0.461135 TAACCGGCGGACTATTCACC 59.539 55.000 35.78 0.00 0.00 4.02
547 557 1.546589 AACCGGCGGACTATTCACCA 61.547 55.000 35.78 0.00 0.00 4.17
548 558 1.219664 CCGGCGGACTATTCACCAA 59.780 57.895 24.41 0.00 0.00 3.67
549 559 1.087771 CCGGCGGACTATTCACCAAC 61.088 60.000 24.41 0.00 0.00 3.77
550 560 0.108329 CGGCGGACTATTCACCAACT 60.108 55.000 0.00 0.00 0.00 3.16
551 561 1.369625 GGCGGACTATTCACCAACTG 58.630 55.000 0.00 0.00 0.00 3.16
552 562 0.727398 GCGGACTATTCACCAACTGC 59.273 55.000 0.00 0.00 0.00 4.40
553 563 1.676014 GCGGACTATTCACCAACTGCT 60.676 52.381 0.00 0.00 0.00 4.24
554 564 2.271800 CGGACTATTCACCAACTGCTC 58.728 52.381 0.00 0.00 0.00 4.26
555 565 2.633488 GGACTATTCACCAACTGCTCC 58.367 52.381 0.00 0.00 0.00 4.70
556 566 2.027192 GGACTATTCACCAACTGCTCCA 60.027 50.000 0.00 0.00 0.00 3.86
557 567 3.370953 GGACTATTCACCAACTGCTCCAT 60.371 47.826 0.00 0.00 0.00 3.41
558 568 4.265073 GACTATTCACCAACTGCTCCATT 58.735 43.478 0.00 0.00 0.00 3.16
559 569 5.428253 GACTATTCACCAACTGCTCCATTA 58.572 41.667 0.00 0.00 0.00 1.90
560 570 5.431765 ACTATTCACCAACTGCTCCATTAG 58.568 41.667 0.00 0.00 0.00 1.73
561 571 2.787473 TCACCAACTGCTCCATTAGG 57.213 50.000 0.00 0.00 0.00 2.69
562 572 2.265367 TCACCAACTGCTCCATTAGGA 58.735 47.619 0.00 0.00 43.21 2.94
577 587 7.409408 TCCATTAGGAGTAGAGATTAGGAGT 57.591 40.000 0.00 0.00 39.61 3.85
578 588 8.521519 TCCATTAGGAGTAGAGATTAGGAGTA 57.478 38.462 0.00 0.00 39.61 2.59
579 589 8.607713 TCCATTAGGAGTAGAGATTAGGAGTAG 58.392 40.741 0.00 0.00 39.61 2.57
580 590 8.607713 CCATTAGGAGTAGAGATTAGGAGTAGA 58.392 40.741 0.00 0.00 36.89 2.59
581 591 9.667107 CATTAGGAGTAGAGATTAGGAGTAGAG 57.333 40.741 0.00 0.00 0.00 2.43
582 592 9.624037 ATTAGGAGTAGAGATTAGGAGTAGAGA 57.376 37.037 0.00 0.00 0.00 3.10
583 593 9.624037 TTAGGAGTAGAGATTAGGAGTAGAGAT 57.376 37.037 0.00 0.00 0.00 2.75
585 595 9.799223 AGGAGTAGAGATTAGGAGTAGAGATAT 57.201 37.037 0.00 0.00 0.00 1.63
586 596 9.832445 GGAGTAGAGATTAGGAGTAGAGATATG 57.168 40.741 0.00 0.00 0.00 1.78
587 597 9.832445 GAGTAGAGATTAGGAGTAGAGATATGG 57.168 40.741 0.00 0.00 0.00 2.74
588 598 9.346515 AGTAGAGATTAGGAGTAGAGATATGGT 57.653 37.037 0.00 0.00 0.00 3.55
591 601 9.969001 AGAGATTAGGAGTAGAGATATGGTAAC 57.031 37.037 0.00 0.00 0.00 2.50
592 602 9.969001 GAGATTAGGAGTAGAGATATGGTAACT 57.031 37.037 0.00 0.00 37.61 2.24
598 608 7.830201 AGGAGTAGAGATATGGTAACTAATCCG 59.170 40.741 0.00 0.00 46.18 4.18
599 609 7.828223 GGAGTAGAGATATGGTAACTAATCCGA 59.172 40.741 0.00 0.00 38.11 4.55
600 610 9.398538 GAGTAGAGATATGGTAACTAATCCGAT 57.601 37.037 0.00 0.00 37.61 4.18
601 611 9.179909 AGTAGAGATATGGTAACTAATCCGATG 57.820 37.037 0.00 0.00 37.61 3.84
602 612 7.411486 AGAGATATGGTAACTAATCCGATGG 57.589 40.000 0.00 0.00 37.61 3.51
603 613 6.381420 AGAGATATGGTAACTAATCCGATGGG 59.619 42.308 0.00 0.00 37.61 4.00
604 614 6.023603 AGATATGGTAACTAATCCGATGGGT 58.976 40.000 0.00 0.00 37.61 4.51
605 615 6.500751 AGATATGGTAACTAATCCGATGGGTT 59.499 38.462 0.00 5.10 37.61 4.11
606 616 4.847990 TGGTAACTAATCCGATGGGTTT 57.152 40.909 0.00 0.00 37.61 3.27
607 617 5.954153 TGGTAACTAATCCGATGGGTTTA 57.046 39.130 0.00 0.00 37.61 2.01
608 618 6.503560 TGGTAACTAATCCGATGGGTTTAT 57.496 37.500 0.00 0.00 37.61 1.40
609 619 6.292923 TGGTAACTAATCCGATGGGTTTATG 58.707 40.000 0.00 0.00 37.61 1.90
610 620 6.126710 TGGTAACTAATCCGATGGGTTTATGT 60.127 38.462 0.00 0.00 37.61 2.29
611 621 6.204108 GGTAACTAATCCGATGGGTTTATGTG 59.796 42.308 0.00 0.00 29.38 3.21
612 622 4.714632 ACTAATCCGATGGGTTTATGTGG 58.285 43.478 0.00 0.00 29.38 4.17
613 623 2.656947 ATCCGATGGGTTTATGTGGG 57.343 50.000 0.00 0.00 33.83 4.61
614 624 1.291109 TCCGATGGGTTTATGTGGGT 58.709 50.000 0.00 0.00 33.83 4.51
615 625 1.065053 TCCGATGGGTTTATGTGGGTG 60.065 52.381 0.00 0.00 33.83 4.61
616 626 1.388547 CGATGGGTTTATGTGGGTGG 58.611 55.000 0.00 0.00 0.00 4.61
617 627 1.340600 CGATGGGTTTATGTGGGTGGT 60.341 52.381 0.00 0.00 0.00 4.16
618 628 2.099405 GATGGGTTTATGTGGGTGGTG 58.901 52.381 0.00 0.00 0.00 4.17
619 629 1.149986 TGGGTTTATGTGGGTGGTGA 58.850 50.000 0.00 0.00 0.00 4.02
620 630 1.499438 TGGGTTTATGTGGGTGGTGAA 59.501 47.619 0.00 0.00 0.00 3.18
621 631 2.167662 GGGTTTATGTGGGTGGTGAAG 58.832 52.381 0.00 0.00 0.00 3.02
622 632 1.544246 GGTTTATGTGGGTGGTGAAGC 59.456 52.381 0.00 0.00 0.00 3.86
623 633 1.199097 GTTTATGTGGGTGGTGAAGCG 59.801 52.381 0.00 0.00 0.00 4.68
624 634 0.687920 TTATGTGGGTGGTGAAGCGA 59.312 50.000 0.00 0.00 0.00 4.93
625 635 0.687920 TATGTGGGTGGTGAAGCGAA 59.312 50.000 0.00 0.00 0.00 4.70
626 636 0.179004 ATGTGGGTGGTGAAGCGAAA 60.179 50.000 0.00 0.00 0.00 3.46
627 637 0.394488 TGTGGGTGGTGAAGCGAAAA 60.394 50.000 0.00 0.00 0.00 2.29
628 638 0.310854 GTGGGTGGTGAAGCGAAAAG 59.689 55.000 0.00 0.00 0.00 2.27
629 639 0.821711 TGGGTGGTGAAGCGAAAAGG 60.822 55.000 0.00 0.00 0.00 3.11
630 640 1.285950 GGTGGTGAAGCGAAAAGGC 59.714 57.895 0.00 0.00 0.00 4.35
631 641 1.452145 GGTGGTGAAGCGAAAAGGCA 61.452 55.000 0.00 0.00 34.64 4.75
632 642 0.040067 GTGGTGAAGCGAAAAGGCAG 60.040 55.000 0.00 0.00 34.64 4.85
633 643 1.172180 TGGTGAAGCGAAAAGGCAGG 61.172 55.000 0.00 0.00 34.64 4.85
634 644 1.172812 GGTGAAGCGAAAAGGCAGGT 61.173 55.000 0.00 0.00 34.64 4.00
635 645 0.040067 GTGAAGCGAAAAGGCAGGTG 60.040 55.000 0.00 0.00 34.64 4.00
636 646 1.172180 TGAAGCGAAAAGGCAGGTGG 61.172 55.000 0.00 0.00 34.64 4.61
637 647 1.866853 GAAGCGAAAAGGCAGGTGGG 61.867 60.000 0.00 0.00 34.64 4.61
735 745 2.699954 CGGACTATTCACCAACTGCTT 58.300 47.619 0.00 0.00 0.00 3.91
760 770 7.934313 TCATTAGGAGTAGAGATACTAGGCAT 58.066 38.462 0.00 0.00 0.00 4.40
779 791 4.932146 GCATGAGGCCGTTGTAAAATAAT 58.068 39.130 0.00 0.00 36.11 1.28
787 799 6.710744 AGGCCGTTGTAAAATAATAGAGGATG 59.289 38.462 0.00 0.00 0.00 3.51
906 921 9.763465 CATTTTAATGCCAAAGATTTGATTCAC 57.237 29.630 6.87 0.00 40.55 3.18
907 922 7.903995 TTTAATGCCAAAGATTTGATTCACC 57.096 32.000 6.87 0.00 40.55 4.02
936 953 9.991388 CTCTCTATATAAACGACTATACAAGGC 57.009 37.037 0.00 0.00 0.00 4.35
947 964 5.010719 CGACTATACAAGGCCCAGAGATTAA 59.989 44.000 0.00 0.00 0.00 1.40
996 1017 7.787028 AGAAATAAGCTATTCTCCGTCTCTTT 58.213 34.615 4.07 0.00 30.16 2.52
998 1019 3.172229 AGCTATTCTCCGTCTCTTTGC 57.828 47.619 0.00 0.00 0.00 3.68
1017 1038 0.974010 CCATGGCACCCAAGAGCAAT 60.974 55.000 0.00 0.00 36.95 3.56
1197 1228 8.437443 TTGCGTCCGTAAATTTATTAACAAAG 57.563 30.769 0.31 0.00 0.00 2.77
1316 1378 3.699894 AGCTCCAGTGTGCTCCCG 61.700 66.667 2.49 0.00 36.65 5.14
1356 1418 3.848301 TTGCCAGACCGCATGCAGT 62.848 57.895 19.57 13.31 38.87 4.40
1394 1456 2.159099 CGACTGGAGCCTACTGCAATAA 60.159 50.000 0.00 0.00 44.39 1.40
1535 3324 4.528206 TGTCATGCGGTCCAGATCTATTAT 59.472 41.667 0.00 0.00 0.00 1.28
1583 3372 4.032786 TCGCATGTCACAAATATCTTCACG 59.967 41.667 0.00 0.00 0.00 4.35
1639 3447 2.145397 TCTTCGTGCTCCTACAGGAT 57.855 50.000 0.00 0.00 44.46 3.24
1686 3494 8.297470 AGCATTGGTATGATCACAAGTTAAAT 57.703 30.769 0.00 0.00 33.37 1.40
1746 3743 7.776030 TCCTAGAGATTGTAAGAACAGTAGGAG 59.224 40.741 0.00 0.00 36.83 3.69
1787 3784 6.092670 TCAAGATGGTCTCATGAAAACGATTC 59.907 38.462 0.00 0.00 32.98 2.52
1798 3795 8.555166 TCATGAAAACGATTCTAAAAACACAC 57.445 30.769 0.00 0.00 0.00 3.82
1799 3796 7.646130 TCATGAAAACGATTCTAAAAACACACC 59.354 33.333 0.00 0.00 0.00 4.16
1803 3800 4.855531 ACGATTCTAAAAACACACCAAGC 58.144 39.130 0.00 0.00 0.00 4.01
1816 3813 2.289945 ACACCAAGCTCAGACCATCTTC 60.290 50.000 0.00 0.00 0.00 2.87
1827 3824 2.510382 AGACCATCTTCTCTCTCGGGTA 59.490 50.000 0.00 0.00 0.00 3.69
1862 3859 6.998074 TCCCTATAATAGCACCAATGAAACTG 59.002 38.462 0.00 0.00 0.00 3.16
1878 3877 7.757097 ATGAAACTGTTACGCTACTAGAATG 57.243 36.000 0.00 0.00 0.00 2.67
1937 3936 8.989131 TGCTTGGTATAAATATATACTCCCTCC 58.011 37.037 6.10 0.00 42.32 4.30
1938 3937 8.142551 GCTTGGTATAAATATATACTCCCTCCG 58.857 40.741 6.10 0.00 42.32 4.63
1939 3938 9.198475 CTTGGTATAAATATATACTCCCTCCGT 57.802 37.037 6.10 0.00 42.32 4.69
1940 3939 9.551339 TTGGTATAAATATATACTCCCTCCGTT 57.449 33.333 6.10 0.00 42.32 4.44
1941 3940 9.193806 TGGTATAAATATATACTCCCTCCGTTC 57.806 37.037 6.10 0.00 42.32 3.95
1942 3941 8.637099 GGTATAAATATATACTCCCTCCGTTCC 58.363 40.741 6.10 0.00 42.32 3.62
1943 3942 9.418839 GTATAAATATATACTCCCTCCGTTCCT 57.581 37.037 0.00 0.00 40.42 3.36
1946 3945 8.731591 AAATATATACTCCCTCCGTTCCTAAA 57.268 34.615 0.00 0.00 0.00 1.85
1947 3946 8.912614 AATATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
1950 3949 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
1951 3950 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1952 3951 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1953 3952 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1954 3953 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1955 3954 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1956 3955 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1957 3956 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1958 3957 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1959 3958 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1974 3973 9.898152 ATTTGTCTTTTTAAAGGTTCAAATGGA 57.102 25.926 19.57 6.66 38.70 3.41
1975 3974 8.710835 TTGTCTTTTTAAAGGTTCAAATGGAC 57.289 30.769 2.63 0.00 36.67 4.02
1976 3975 8.073467 TGTCTTTTTAAAGGTTCAAATGGACT 57.927 30.769 2.63 0.00 36.67 3.85
1977 3976 9.191479 TGTCTTTTTAAAGGTTCAAATGGACTA 57.809 29.630 2.63 0.00 36.67 2.59
1978 3977 9.459640 GTCTTTTTAAAGGTTCAAATGGACTAC 57.540 33.333 2.63 0.00 36.67 2.73
1979 3978 8.635328 TCTTTTTAAAGGTTCAAATGGACTACC 58.365 33.333 2.63 0.00 36.67 3.18
1980 3979 8.417884 CTTTTTAAAGGTTCAAATGGACTACCA 58.582 33.333 0.00 0.00 40.21 3.25
2031 4030 7.944729 AAAGTGTATATCCACTCATTTTGCT 57.055 32.000 0.91 0.00 44.74 3.91
2032 4031 7.559590 AAGTGTATATCCACTCATTTTGCTC 57.440 36.000 0.91 0.00 44.74 4.26
2033 4032 6.058183 AGTGTATATCCACTCATTTTGCTCC 58.942 40.000 0.00 0.00 41.84 4.70
2034 4033 5.050091 GTGTATATCCACTCATTTTGCTCCG 60.050 44.000 0.00 0.00 32.50 4.63
2035 4034 2.496899 ATCCACTCATTTTGCTCCGT 57.503 45.000 0.00 0.00 0.00 4.69
2036 4035 3.627395 ATCCACTCATTTTGCTCCGTA 57.373 42.857 0.00 0.00 0.00 4.02
2037 4036 3.627395 TCCACTCATTTTGCTCCGTAT 57.373 42.857 0.00 0.00 0.00 3.06
2038 4037 4.746535 TCCACTCATTTTGCTCCGTATA 57.253 40.909 0.00 0.00 0.00 1.47
2039 4038 5.092554 TCCACTCATTTTGCTCCGTATAA 57.907 39.130 0.00 0.00 0.00 0.98
2040 4039 5.492895 TCCACTCATTTTGCTCCGTATAAA 58.507 37.500 0.00 0.00 0.00 1.40
2041 4040 5.584649 TCCACTCATTTTGCTCCGTATAAAG 59.415 40.000 0.00 0.00 0.00 1.85
2042 4041 5.354234 CCACTCATTTTGCTCCGTATAAAGT 59.646 40.000 0.00 0.00 0.00 2.66
2043 4042 6.456988 CCACTCATTTTGCTCCGTATAAAGTC 60.457 42.308 0.00 0.00 0.00 3.01
2044 4043 6.313905 CACTCATTTTGCTCCGTATAAAGTCT 59.686 38.462 0.00 0.00 0.00 3.24
2045 4044 6.879458 ACTCATTTTGCTCCGTATAAAGTCTT 59.121 34.615 0.00 0.00 0.00 3.01
2046 4045 7.390718 ACTCATTTTGCTCCGTATAAAGTCTTT 59.609 33.333 2.81 2.81 0.00 2.52
2047 4046 8.106247 TCATTTTGCTCCGTATAAAGTCTTTT 57.894 30.769 2.51 0.00 0.00 2.27
2048 4047 8.573035 TCATTTTGCTCCGTATAAAGTCTTTTT 58.427 29.630 2.51 0.00 0.00 1.94
2076 4075 5.259832 GGAAAGCTCCGTATGTAGTTACT 57.740 43.478 0.00 0.00 30.03 2.24
2077 4076 5.658468 GGAAAGCTCCGTATGTAGTTACTT 58.342 41.667 0.00 0.00 30.03 2.24
2078 4077 5.519206 GGAAAGCTCCGTATGTAGTTACTTG 59.481 44.000 0.00 0.00 30.03 3.16
2079 4078 5.656213 AAGCTCCGTATGTAGTTACTTGT 57.344 39.130 0.00 0.00 0.00 3.16
2080 4079 5.656213 AGCTCCGTATGTAGTTACTTGTT 57.344 39.130 0.00 0.00 0.00 2.83
2081 4080 6.034161 AGCTCCGTATGTAGTTACTTGTTT 57.966 37.500 0.00 0.00 0.00 2.83
2082 4081 6.461640 AGCTCCGTATGTAGTTACTTGTTTT 58.538 36.000 0.00 0.00 0.00 2.43
2083 4082 6.932960 AGCTCCGTATGTAGTTACTTGTTTTT 59.067 34.615 0.00 0.00 0.00 1.94
2105 4104 7.989416 TTTTTGAGGGGTATGTAGTTACTTG 57.011 36.000 0.00 0.00 0.00 3.16
2106 4105 6.691255 TTTGAGGGGTATGTAGTTACTTGT 57.309 37.500 0.00 0.00 0.00 3.16
2107 4106 6.691255 TTGAGGGGTATGTAGTTACTTGTT 57.309 37.500 0.00 0.00 0.00 2.83
2108 4107 6.045072 TGAGGGGTATGTAGTTACTTGTTG 57.955 41.667 0.00 0.00 0.00 3.33
2109 4108 5.781306 TGAGGGGTATGTAGTTACTTGTTGA 59.219 40.000 0.00 0.00 0.00 3.18
2110 4109 6.270463 TGAGGGGTATGTAGTTACTTGTTGAA 59.730 38.462 0.00 0.00 0.00 2.69
2111 4110 7.081857 AGGGGTATGTAGTTACTTGTTGAAA 57.918 36.000 0.00 0.00 0.00 2.69
2112 4111 7.519927 AGGGGTATGTAGTTACTTGTTGAAAA 58.480 34.615 0.00 0.00 0.00 2.29
2146 4145 9.780186 AAGATAAATATTTAGAAACGGAGGGAG 57.220 33.333 13.15 0.00 0.00 4.30
2147 4146 8.935741 AGATAAATATTTAGAAACGGAGGGAGT 58.064 33.333 13.15 0.00 0.00 3.85
2149 4148 9.993454 ATAAATATTTAGAAACGGAGGGAGTAC 57.007 33.333 13.15 0.00 0.00 2.73
2150 4149 7.427989 AATATTTAGAAACGGAGGGAGTACA 57.572 36.000 0.00 0.00 0.00 2.90
2151 4150 5.952347 ATTTAGAAACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
2173 4172 1.399440 CCATTCCAACGCAGACATGAG 59.601 52.381 0.00 0.00 0.00 2.90
2178 4177 2.560981 TCCAACGCAGACATGAGAAGTA 59.439 45.455 0.00 0.00 0.00 2.24
2218 4220 3.347958 TTTCAGAACGGTGTTCATTGC 57.652 42.857 11.81 0.00 0.00 3.56
2252 4254 1.377725 ACTCGCTTGATGGGCCAAG 60.378 57.895 11.89 4.47 44.67 3.61
2339 4343 0.177141 GGATAACTACACAGCCGCCA 59.823 55.000 0.00 0.00 0.00 5.69
2354 4358 2.586245 CCAGCTGCGGAGGAATCA 59.414 61.111 8.66 0.00 0.00 2.57
2387 4392 3.251004 GCTTCCTGTTCAGTTAGTGTTGG 59.749 47.826 0.00 0.00 0.00 3.77
2390 4395 1.531149 CTGTTCAGTTAGTGTTGGGCG 59.469 52.381 0.00 0.00 0.00 6.13
2391 4396 1.139256 TGTTCAGTTAGTGTTGGGCGA 59.861 47.619 0.00 0.00 0.00 5.54
2392 4397 1.529865 GTTCAGTTAGTGTTGGGCGAC 59.470 52.381 0.00 0.00 0.00 5.19
2405 4410 2.900273 GCGACCTCAGGCCATACA 59.100 61.111 5.01 0.00 0.00 2.29
2406 4411 1.521681 GCGACCTCAGGCCATACAC 60.522 63.158 5.01 0.00 0.00 2.90
2407 4412 1.144057 CGACCTCAGGCCATACACC 59.856 63.158 5.01 0.00 0.00 4.16
2408 4413 1.613317 CGACCTCAGGCCATACACCA 61.613 60.000 5.01 0.00 0.00 4.17
2409 4414 0.839946 GACCTCAGGCCATACACCAT 59.160 55.000 5.01 0.00 0.00 3.55
2410 4415 0.548031 ACCTCAGGCCATACACCATG 59.452 55.000 5.01 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 1.101635 CCTCTCGACCGCTCCATACA 61.102 60.000 0.00 0.00 0.00 2.29
153 154 0.471211 ACCCTCTCGTTTGACCTCCA 60.471 55.000 0.00 0.00 0.00 3.86
416 426 1.340600 ACCACCCACATAAACCCATCG 60.341 52.381 0.00 0.00 0.00 3.84
457 467 4.721132 TGTTGGTTTTATTTCGTCTCCCT 58.279 39.130 0.00 0.00 0.00 4.20
458 468 5.441709 TTGTTGGTTTTATTTCGTCTCCC 57.558 39.130 0.00 0.00 0.00 4.30
459 469 7.940178 ATTTTGTTGGTTTTATTTCGTCTCC 57.060 32.000 0.00 0.00 0.00 3.71
467 477 9.989869 CGTTGGTTTTATTTTGTTGGTTTTATT 57.010 25.926 0.00 0.00 0.00 1.40
468 478 9.379791 TCGTTGGTTTTATTTTGTTGGTTTTAT 57.620 25.926 0.00 0.00 0.00 1.40
469 479 8.767478 TCGTTGGTTTTATTTTGTTGGTTTTA 57.233 26.923 0.00 0.00 0.00 1.52
470 480 7.668525 TCGTTGGTTTTATTTTGTTGGTTTT 57.331 28.000 0.00 0.00 0.00 2.43
471 481 7.668525 TTCGTTGGTTTTATTTTGTTGGTTT 57.331 28.000 0.00 0.00 0.00 3.27
472 482 7.388224 ACTTTCGTTGGTTTTATTTTGTTGGTT 59.612 29.630 0.00 0.00 0.00 3.67
473 483 6.874664 ACTTTCGTTGGTTTTATTTTGTTGGT 59.125 30.769 0.00 0.00 0.00 3.67
474 484 7.297229 ACTTTCGTTGGTTTTATTTTGTTGG 57.703 32.000 0.00 0.00 0.00 3.77
475 485 9.078753 ACTACTTTCGTTGGTTTTATTTTGTTG 57.921 29.630 0.00 0.00 0.00 3.33
476 486 9.078753 CACTACTTTCGTTGGTTTTATTTTGTT 57.921 29.630 0.00 0.00 0.00 2.83
477 487 8.460428 TCACTACTTTCGTTGGTTTTATTTTGT 58.540 29.630 0.00 0.00 0.00 2.83
478 488 8.844441 TCACTACTTTCGTTGGTTTTATTTTG 57.156 30.769 0.00 0.00 0.00 2.44
479 489 8.132995 CCTCACTACTTTCGTTGGTTTTATTTT 58.867 33.333 0.00 0.00 0.00 1.82
480 490 7.645402 CCTCACTACTTTCGTTGGTTTTATTT 58.355 34.615 0.00 0.00 0.00 1.40
481 491 6.293790 GCCTCACTACTTTCGTTGGTTTTATT 60.294 38.462 0.00 0.00 0.00 1.40
482 492 5.180680 GCCTCACTACTTTCGTTGGTTTTAT 59.819 40.000 0.00 0.00 0.00 1.40
483 493 4.512571 GCCTCACTACTTTCGTTGGTTTTA 59.487 41.667 0.00 0.00 0.00 1.52
484 494 3.314357 GCCTCACTACTTTCGTTGGTTTT 59.686 43.478 0.00 0.00 0.00 2.43
485 495 2.876550 GCCTCACTACTTTCGTTGGTTT 59.123 45.455 0.00 0.00 0.00 3.27
486 496 2.490991 GCCTCACTACTTTCGTTGGTT 58.509 47.619 0.00 0.00 0.00 3.67
487 497 1.604693 CGCCTCACTACTTTCGTTGGT 60.605 52.381 0.00 0.00 0.00 3.67
488 498 1.068474 CGCCTCACTACTTTCGTTGG 58.932 55.000 0.00 0.00 0.00 3.77
489 499 2.060326 TCGCCTCACTACTTTCGTTG 57.940 50.000 0.00 0.00 0.00 4.10
490 500 2.806608 TTCGCCTCACTACTTTCGTT 57.193 45.000 0.00 0.00 0.00 3.85
491 501 2.806608 TTTCGCCTCACTACTTTCGT 57.193 45.000 0.00 0.00 0.00 3.85
492 502 5.773239 TTTATTTCGCCTCACTACTTTCG 57.227 39.130 0.00 0.00 0.00 3.46
493 503 6.072893 TGGTTTTATTTCGCCTCACTACTTTC 60.073 38.462 0.00 0.00 0.00 2.62
494 504 5.766174 TGGTTTTATTTCGCCTCACTACTTT 59.234 36.000 0.00 0.00 0.00 2.66
495 505 5.310451 TGGTTTTATTTCGCCTCACTACTT 58.690 37.500 0.00 0.00 0.00 2.24
496 506 4.901868 TGGTTTTATTTCGCCTCACTACT 58.098 39.130 0.00 0.00 0.00 2.57
497 507 4.436986 GCTGGTTTTATTTCGCCTCACTAC 60.437 45.833 0.00 0.00 0.00 2.73
498 508 3.687698 GCTGGTTTTATTTCGCCTCACTA 59.312 43.478 0.00 0.00 0.00 2.74
499 509 2.488153 GCTGGTTTTATTTCGCCTCACT 59.512 45.455 0.00 0.00 0.00 3.41
500 510 2.227865 TGCTGGTTTTATTTCGCCTCAC 59.772 45.455 0.00 0.00 0.00 3.51
501 511 2.509569 TGCTGGTTTTATTTCGCCTCA 58.490 42.857 0.00 0.00 0.00 3.86
502 512 3.569250 TTGCTGGTTTTATTTCGCCTC 57.431 42.857 0.00 0.00 0.00 4.70
503 513 4.329462 TTTTGCTGGTTTTATTTCGCCT 57.671 36.364 0.00 0.00 0.00 5.52
522 532 4.095334 GTGAATAGTCCGCCGGTTATTTTT 59.905 41.667 1.63 0.00 0.00 1.94
523 533 3.624410 GTGAATAGTCCGCCGGTTATTTT 59.376 43.478 1.63 0.00 0.00 1.82
524 534 3.200483 GTGAATAGTCCGCCGGTTATTT 58.800 45.455 1.63 0.00 0.00 1.40
525 535 2.484241 GGTGAATAGTCCGCCGGTTATT 60.484 50.000 1.63 9.07 0.00 1.40
526 536 1.069668 GGTGAATAGTCCGCCGGTTAT 59.930 52.381 1.63 0.00 0.00 1.89
527 537 0.461135 GGTGAATAGTCCGCCGGTTA 59.539 55.000 1.63 0.00 0.00 2.85
528 538 1.219935 GGTGAATAGTCCGCCGGTT 59.780 57.895 1.63 0.00 0.00 4.44
529 539 1.546589 TTGGTGAATAGTCCGCCGGT 61.547 55.000 1.63 0.00 37.01 5.28
530 540 1.087771 GTTGGTGAATAGTCCGCCGG 61.088 60.000 0.00 0.00 37.01 6.13
531 541 0.108329 AGTTGGTGAATAGTCCGCCG 60.108 55.000 0.00 0.00 37.01 6.46
532 542 1.369625 CAGTTGGTGAATAGTCCGCC 58.630 55.000 0.00 0.00 34.88 6.13
533 543 0.727398 GCAGTTGGTGAATAGTCCGC 59.273 55.000 0.00 0.00 0.00 5.54
534 544 2.271800 GAGCAGTTGGTGAATAGTCCG 58.728 52.381 0.00 0.00 0.00 4.79
535 545 2.027192 TGGAGCAGTTGGTGAATAGTCC 60.027 50.000 0.00 0.00 0.00 3.85
536 546 3.334583 TGGAGCAGTTGGTGAATAGTC 57.665 47.619 0.00 0.00 0.00 2.59
537 547 4.307032 AATGGAGCAGTTGGTGAATAGT 57.693 40.909 0.00 0.00 0.00 2.12
538 548 4.818546 CCTAATGGAGCAGTTGGTGAATAG 59.181 45.833 0.00 0.00 34.57 1.73
539 549 4.473196 TCCTAATGGAGCAGTTGGTGAATA 59.527 41.667 0.00 0.00 37.46 1.75
540 550 3.266772 TCCTAATGGAGCAGTTGGTGAAT 59.733 43.478 0.00 0.00 37.46 2.57
541 551 2.642311 TCCTAATGGAGCAGTTGGTGAA 59.358 45.455 0.00 0.00 37.46 3.18
542 552 2.265367 TCCTAATGGAGCAGTTGGTGA 58.735 47.619 0.00 0.00 37.46 4.02
543 553 2.787473 TCCTAATGGAGCAGTTGGTG 57.213 50.000 0.00 0.00 37.46 4.17
553 563 7.409408 ACTCCTAATCTCTACTCCTAATGGA 57.591 40.000 0.00 0.00 40.69 3.41
554 564 8.607713 TCTACTCCTAATCTCTACTCCTAATGG 58.392 40.741 0.00 0.00 0.00 3.16
555 565 9.667107 CTCTACTCCTAATCTCTACTCCTAATG 57.333 40.741 0.00 0.00 0.00 1.90
556 566 9.624037 TCTCTACTCCTAATCTCTACTCCTAAT 57.376 37.037 0.00 0.00 0.00 1.73
557 567 9.624037 ATCTCTACTCCTAATCTCTACTCCTAA 57.376 37.037 0.00 0.00 0.00 2.69
559 569 9.799223 ATATCTCTACTCCTAATCTCTACTCCT 57.201 37.037 0.00 0.00 0.00 3.69
560 570 9.832445 CATATCTCTACTCCTAATCTCTACTCC 57.168 40.741 0.00 0.00 0.00 3.85
561 571 9.832445 CCATATCTCTACTCCTAATCTCTACTC 57.168 40.741 0.00 0.00 0.00 2.59
562 572 9.346515 ACCATATCTCTACTCCTAATCTCTACT 57.653 37.037 0.00 0.00 0.00 2.57
565 575 9.969001 GTTACCATATCTCTACTCCTAATCTCT 57.031 37.037 0.00 0.00 0.00 3.10
566 576 9.969001 AGTTACCATATCTCTACTCCTAATCTC 57.031 37.037 0.00 0.00 0.00 2.75
572 582 7.830201 CGGATTAGTTACCATATCTCTACTCCT 59.170 40.741 0.00 0.00 32.21 3.69
573 583 7.828223 TCGGATTAGTTACCATATCTCTACTCC 59.172 40.741 0.00 0.00 31.55 3.85
574 584 8.789825 TCGGATTAGTTACCATATCTCTACTC 57.210 38.462 0.00 0.00 0.00 2.59
575 585 9.179909 CATCGGATTAGTTACCATATCTCTACT 57.820 37.037 0.00 0.00 0.00 2.57
576 586 8.407064 CCATCGGATTAGTTACCATATCTCTAC 58.593 40.741 0.00 0.00 0.00 2.59
577 587 7.560262 CCCATCGGATTAGTTACCATATCTCTA 59.440 40.741 0.00 0.00 0.00 2.43
578 588 6.381420 CCCATCGGATTAGTTACCATATCTCT 59.619 42.308 0.00 0.00 0.00 3.10
579 589 6.154706 ACCCATCGGATTAGTTACCATATCTC 59.845 42.308 0.00 0.00 0.00 2.75
580 590 6.023603 ACCCATCGGATTAGTTACCATATCT 58.976 40.000 0.00 0.00 0.00 1.98
581 591 6.295719 ACCCATCGGATTAGTTACCATATC 57.704 41.667 0.00 0.00 0.00 1.63
582 592 6.697641 AACCCATCGGATTAGTTACCATAT 57.302 37.500 1.54 0.00 0.00 1.78
583 593 6.503560 AAACCCATCGGATTAGTTACCATA 57.496 37.500 3.53 0.00 0.00 2.74
584 594 5.382664 AAACCCATCGGATTAGTTACCAT 57.617 39.130 3.53 0.00 0.00 3.55
585 595 4.847990 AAACCCATCGGATTAGTTACCA 57.152 40.909 3.53 0.00 0.00 3.25
586 596 6.204108 CACATAAACCCATCGGATTAGTTACC 59.796 42.308 3.53 0.00 30.62 2.85
587 597 6.204108 CCACATAAACCCATCGGATTAGTTAC 59.796 42.308 3.53 0.00 30.62 2.50
588 598 6.292923 CCACATAAACCCATCGGATTAGTTA 58.707 40.000 3.53 0.00 30.62 2.24
589 599 5.130350 CCACATAAACCCATCGGATTAGTT 58.870 41.667 0.00 0.00 30.62 2.24
590 600 4.445735 CCCACATAAACCCATCGGATTAGT 60.446 45.833 0.00 0.00 30.62 2.24
591 601 4.072131 CCCACATAAACCCATCGGATTAG 58.928 47.826 0.00 0.00 30.62 1.73
592 602 3.460340 ACCCACATAAACCCATCGGATTA 59.540 43.478 0.00 0.00 31.56 1.75
593 603 2.243736 ACCCACATAAACCCATCGGATT 59.756 45.455 0.00 0.00 0.00 3.01
594 604 1.850345 ACCCACATAAACCCATCGGAT 59.150 47.619 0.00 0.00 0.00 4.18
595 605 1.065053 CACCCACATAAACCCATCGGA 60.065 52.381 0.00 0.00 0.00 4.55
596 606 1.388547 CACCCACATAAACCCATCGG 58.611 55.000 0.00 0.00 0.00 4.18
597 607 1.340600 ACCACCCACATAAACCCATCG 60.341 52.381 0.00 0.00 0.00 3.84
598 608 2.099405 CACCACCCACATAAACCCATC 58.901 52.381 0.00 0.00 0.00 3.51
599 609 1.713647 TCACCACCCACATAAACCCAT 59.286 47.619 0.00 0.00 0.00 4.00
600 610 1.149986 TCACCACCCACATAAACCCA 58.850 50.000 0.00 0.00 0.00 4.51
601 611 2.167662 CTTCACCACCCACATAAACCC 58.832 52.381 0.00 0.00 0.00 4.11
602 612 1.544246 GCTTCACCACCCACATAAACC 59.456 52.381 0.00 0.00 0.00 3.27
603 613 1.199097 CGCTTCACCACCCACATAAAC 59.801 52.381 0.00 0.00 0.00 2.01
604 614 1.072489 TCGCTTCACCACCCACATAAA 59.928 47.619 0.00 0.00 0.00 1.40
605 615 0.687920 TCGCTTCACCACCCACATAA 59.312 50.000 0.00 0.00 0.00 1.90
606 616 0.687920 TTCGCTTCACCACCCACATA 59.312 50.000 0.00 0.00 0.00 2.29
607 617 0.179004 TTTCGCTTCACCACCCACAT 60.179 50.000 0.00 0.00 0.00 3.21
608 618 0.394488 TTTTCGCTTCACCACCCACA 60.394 50.000 0.00 0.00 0.00 4.17
609 619 0.310854 CTTTTCGCTTCACCACCCAC 59.689 55.000 0.00 0.00 0.00 4.61
610 620 0.821711 CCTTTTCGCTTCACCACCCA 60.822 55.000 0.00 0.00 0.00 4.51
611 621 1.956802 CCTTTTCGCTTCACCACCC 59.043 57.895 0.00 0.00 0.00 4.61
612 622 1.285950 GCCTTTTCGCTTCACCACC 59.714 57.895 0.00 0.00 0.00 4.61
613 623 0.040067 CTGCCTTTTCGCTTCACCAC 60.040 55.000 0.00 0.00 0.00 4.16
614 624 1.172180 CCTGCCTTTTCGCTTCACCA 61.172 55.000 0.00 0.00 0.00 4.17
615 625 1.172812 ACCTGCCTTTTCGCTTCACC 61.173 55.000 0.00 0.00 0.00 4.02
616 626 0.040067 CACCTGCCTTTTCGCTTCAC 60.040 55.000 0.00 0.00 0.00 3.18
617 627 1.172180 CCACCTGCCTTTTCGCTTCA 61.172 55.000 0.00 0.00 0.00 3.02
618 628 1.581447 CCACCTGCCTTTTCGCTTC 59.419 57.895 0.00 0.00 0.00 3.86
619 629 1.903404 CCCACCTGCCTTTTCGCTT 60.903 57.895 0.00 0.00 0.00 4.68
620 630 2.282462 CCCACCTGCCTTTTCGCT 60.282 61.111 0.00 0.00 0.00 4.93
621 631 2.282180 TCCCACCTGCCTTTTCGC 60.282 61.111 0.00 0.00 0.00 4.70
622 632 1.675641 CCTCCCACCTGCCTTTTCG 60.676 63.158 0.00 0.00 0.00 3.46
623 633 1.304464 CCCTCCCACCTGCCTTTTC 60.304 63.158 0.00 0.00 0.00 2.29
624 634 1.778383 TCCCTCCCACCTGCCTTTT 60.778 57.895 0.00 0.00 0.00 2.27
625 635 2.121506 TCCCTCCCACCTGCCTTT 60.122 61.111 0.00 0.00 0.00 3.11
626 636 2.612115 CTCCCTCCCACCTGCCTT 60.612 66.667 0.00 0.00 0.00 4.35
627 637 3.615811 TCTCCCTCCCACCTGCCT 61.616 66.667 0.00 0.00 0.00 4.75
628 638 3.403558 GTCTCCCTCCCACCTGCC 61.404 72.222 0.00 0.00 0.00 4.85
629 639 3.775654 CGTCTCCCTCCCACCTGC 61.776 72.222 0.00 0.00 0.00 4.85
630 640 1.192146 TTTCGTCTCCCTCCCACCTG 61.192 60.000 0.00 0.00 0.00 4.00
631 641 0.252742 ATTTCGTCTCCCTCCCACCT 60.253 55.000 0.00 0.00 0.00 4.00
632 642 1.492764 TATTTCGTCTCCCTCCCACC 58.507 55.000 0.00 0.00 0.00 4.61
633 643 3.622166 TTTATTTCGTCTCCCTCCCAC 57.378 47.619 0.00 0.00 0.00 4.61
634 644 3.307904 GGTTTTATTTCGTCTCCCTCCCA 60.308 47.826 0.00 0.00 0.00 4.37
635 645 3.276857 GGTTTTATTTCGTCTCCCTCCC 58.723 50.000 0.00 0.00 0.00 4.30
636 646 3.946606 TGGTTTTATTTCGTCTCCCTCC 58.053 45.455 0.00 0.00 0.00 4.30
637 647 4.142966 CGTTGGTTTTATTTCGTCTCCCTC 60.143 45.833 0.00 0.00 0.00 4.30
680 690 2.488153 GCTGGTTTTATTTCGCCTCACT 59.512 45.455 0.00 0.00 0.00 3.41
735 745 7.331089 TGCCTAGTATCTCTACTCCTAATGA 57.669 40.000 0.00 0.00 39.04 2.57
760 770 6.053005 CCTCTATTATTTTACAACGGCCTCA 58.947 40.000 0.00 0.00 0.00 3.86
779 791 7.147391 TGGTTTCCAAATATGTAGCATCCTCTA 60.147 37.037 0.00 0.00 0.00 2.43
906 921 8.051535 TGTATAGTCGTTTATATAGAGAGGGGG 58.948 40.741 0.00 0.00 0.00 5.40
907 922 9.458727 TTGTATAGTCGTTTATATAGAGAGGGG 57.541 37.037 0.00 0.00 0.00 4.79
936 953 4.957684 AAGGATACGGTTAATCTCTGGG 57.042 45.455 0.00 0.00 46.39 4.45
947 964 1.480954 CTGTGTGCCTAAGGATACGGT 59.519 52.381 0.00 0.00 46.39 4.83
998 1019 0.974010 ATTGCTCTTGGGTGCCATGG 60.974 55.000 7.63 7.63 31.53 3.66
1031 1052 1.096416 AAGAACCACGAAAACCGCAA 58.904 45.000 0.00 0.00 43.32 4.85
1197 1228 9.220767 GTATGTAGGGAAAAGTATTGATGGATC 57.779 37.037 0.00 0.00 0.00 3.36
1316 1378 1.067060 GGTCTTGGCACTTTTCCACAC 59.933 52.381 0.00 0.00 32.45 3.82
1356 1418 0.975556 TCGAGGGCTTGCCACTGATA 60.976 55.000 14.04 0.00 0.00 2.15
1394 1456 2.671177 GCGCAACAGCACTGATCGT 61.671 57.895 0.30 0.00 37.05 3.73
1454 1522 7.752239 CCAATACTACATTTGAAAGAAGCTGTG 59.248 37.037 0.00 0.00 0.00 3.66
1535 3324 0.973632 TAGCAGTCTCCTCGCCAAAA 59.026 50.000 0.00 0.00 0.00 2.44
1583 3372 8.839947 ATAAACAGGTAAAAACACACGTTTAC 57.160 30.769 0.00 0.00 44.65 2.01
1639 3447 4.991153 TGCTTGTGTAACCAAACAATCA 57.009 36.364 0.00 0.00 35.82 2.57
1730 3727 3.507411 ACCTGCTCCTACTGTTCTTACA 58.493 45.455 0.00 0.00 0.00 2.41
1731 3728 5.360144 TGATACCTGCTCCTACTGTTCTTAC 59.640 44.000 0.00 0.00 0.00 2.34
1746 3743 7.945134 ACCATCTTGATTTATTTGATACCTGC 58.055 34.615 0.00 0.00 0.00 4.85
1787 3784 4.261197 GGTCTGAGCTTGGTGTGTTTTTAG 60.261 45.833 0.00 0.00 0.00 1.85
1798 3795 2.500910 AGAGAAGATGGTCTGAGCTTGG 59.499 50.000 8.47 0.00 0.00 3.61
1799 3796 3.448301 AGAGAGAAGATGGTCTGAGCTTG 59.552 47.826 8.47 0.00 0.00 4.01
1803 3800 2.618241 CCGAGAGAGAAGATGGTCTGAG 59.382 54.545 0.00 0.00 0.00 3.35
1836 3833 7.502226 CAGTTTCATTGGTGCTATTATAGGGAA 59.498 37.037 1.12 0.00 0.00 3.97
1862 3859 6.098017 AGGTCAAACATTCTAGTAGCGTAAC 58.902 40.000 0.00 0.00 0.00 2.50
1878 3877 6.445357 TTCCAAGTTCAGTTAAGGTCAAAC 57.555 37.500 0.00 0.00 0.00 2.93
1914 3913 9.551339 AACGGAGGGAGTATATATTTATACCAA 57.449 33.333 9.05 0.00 40.68 3.67
1915 3914 9.193806 GAACGGAGGGAGTATATATTTATACCA 57.806 37.037 9.05 0.00 40.68 3.25
1916 3915 8.637099 GGAACGGAGGGAGTATATATTTATACC 58.363 40.741 9.05 2.91 40.68 2.73
1917 3916 9.418839 AGGAACGGAGGGAGTATATATTTATAC 57.581 37.037 5.46 5.46 40.28 1.47
1930 3929 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1931 3930 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1933 3932 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1948 3947 9.898152 TCCATTTGAACCTTTAAAAAGACAAAT 57.102 25.926 18.08 18.08 40.25 2.32
1949 3948 9.157104 GTCCATTTGAACCTTTAAAAAGACAAA 57.843 29.630 16.37 16.37 38.28 2.83
1950 3949 8.536175 AGTCCATTTGAACCTTTAAAAAGACAA 58.464 29.630 4.01 5.23 38.28 3.18
1951 3950 8.073467 AGTCCATTTGAACCTTTAAAAAGACA 57.927 30.769 4.01 0.00 38.28 3.41
1952 3951 9.459640 GTAGTCCATTTGAACCTTTAAAAAGAC 57.540 33.333 4.01 0.00 38.28 3.01
1953 3952 8.635328 GGTAGTCCATTTGAACCTTTAAAAAGA 58.365 33.333 4.01 0.00 38.28 2.52
1954 3953 8.417884 TGGTAGTCCATTTGAACCTTTAAAAAG 58.582 33.333 0.00 0.00 39.03 2.27
1955 3954 8.307582 TGGTAGTCCATTTGAACCTTTAAAAA 57.692 30.769 0.00 0.00 39.03 1.94
1956 3955 7.899648 TGGTAGTCCATTTGAACCTTTAAAA 57.100 32.000 0.00 0.00 39.03 1.52
2010 4009 5.050091 CGGAGCAAAATGAGTGGATATACAC 60.050 44.000 10.34 10.34 41.63 2.90
2011 4010 5.056480 CGGAGCAAAATGAGTGGATATACA 58.944 41.667 0.00 0.00 0.00 2.29
2012 4011 5.057149 ACGGAGCAAAATGAGTGGATATAC 58.943 41.667 0.00 0.00 0.00 1.47
2013 4012 5.290493 ACGGAGCAAAATGAGTGGATATA 57.710 39.130 0.00 0.00 0.00 0.86
2014 4013 4.156455 ACGGAGCAAAATGAGTGGATAT 57.844 40.909 0.00 0.00 0.00 1.63
2015 4014 3.627395 ACGGAGCAAAATGAGTGGATA 57.373 42.857 0.00 0.00 0.00 2.59
2016 4015 2.496899 ACGGAGCAAAATGAGTGGAT 57.503 45.000 0.00 0.00 0.00 3.41
2017 4016 3.627395 ATACGGAGCAAAATGAGTGGA 57.373 42.857 0.00 0.00 0.00 4.02
2018 4017 5.354234 ACTTTATACGGAGCAAAATGAGTGG 59.646 40.000 0.00 0.00 0.00 4.00
2019 4018 6.313905 AGACTTTATACGGAGCAAAATGAGTG 59.686 38.462 0.00 0.00 0.00 3.51
2020 4019 6.407202 AGACTTTATACGGAGCAAAATGAGT 58.593 36.000 0.00 0.00 0.00 3.41
2021 4020 6.910536 AGACTTTATACGGAGCAAAATGAG 57.089 37.500 0.00 0.00 0.00 2.90
2022 4021 7.681939 AAAGACTTTATACGGAGCAAAATGA 57.318 32.000 0.00 0.00 0.00 2.57
2023 4022 8.742554 AAAAAGACTTTATACGGAGCAAAATG 57.257 30.769 0.00 0.00 0.00 2.32
2054 4053 5.259832 AGTAACTACATACGGAGCTTTCC 57.740 43.478 0.00 0.00 0.00 3.13
2055 4054 6.098017 ACAAGTAACTACATACGGAGCTTTC 58.902 40.000 0.00 0.00 0.00 2.62
2056 4055 6.034161 ACAAGTAACTACATACGGAGCTTT 57.966 37.500 0.00 0.00 0.00 3.51
2057 4056 5.656213 ACAAGTAACTACATACGGAGCTT 57.344 39.130 0.00 0.00 0.00 3.74
2058 4057 5.656213 AACAAGTAACTACATACGGAGCT 57.344 39.130 0.00 0.00 0.00 4.09
2059 4058 6.716898 AAAACAAGTAACTACATACGGAGC 57.283 37.500 0.00 0.00 0.00 4.70
2081 4080 7.519927 ACAAGTAACTACATACCCCTCAAAAA 58.480 34.615 0.00 0.00 0.00 1.94
2082 4081 7.081857 ACAAGTAACTACATACCCCTCAAAA 57.918 36.000 0.00 0.00 0.00 2.44
2083 4082 6.691255 ACAAGTAACTACATACCCCTCAAA 57.309 37.500 0.00 0.00 0.00 2.69
2084 4083 6.270463 TCAACAAGTAACTACATACCCCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
2085 4084 5.781306 TCAACAAGTAACTACATACCCCTCA 59.219 40.000 0.00 0.00 0.00 3.86
2086 4085 6.290294 TCAACAAGTAACTACATACCCCTC 57.710 41.667 0.00 0.00 0.00 4.30
2087 4086 6.691255 TTCAACAAGTAACTACATACCCCT 57.309 37.500 0.00 0.00 0.00 4.79
2088 4087 7.446319 AGTTTTCAACAAGTAACTACATACCCC 59.554 37.037 0.00 0.00 0.00 4.95
2089 4088 8.387190 AGTTTTCAACAAGTAACTACATACCC 57.613 34.615 0.00 0.00 0.00 3.69
2090 4089 9.269453 AGAGTTTTCAACAAGTAACTACATACC 57.731 33.333 0.00 0.00 31.41 2.73
2097 4096 9.886132 TCTTTCTAGAGTTTTCAACAAGTAACT 57.114 29.630 0.00 0.00 33.78 2.24
2120 4119 9.780186 CTCCCTCCGTTTCTAAATATTTATCTT 57.220 33.333 8.34 0.00 0.00 2.40
2121 4120 8.935741 ACTCCCTCCGTTTCTAAATATTTATCT 58.064 33.333 8.34 0.00 0.00 1.98
2123 4122 9.993454 GTACTCCCTCCGTTTCTAAATATTTAT 57.007 33.333 8.34 0.00 0.00 1.40
2124 4123 8.980596 TGTACTCCCTCCGTTTCTAAATATTTA 58.019 33.333 7.66 7.66 0.00 1.40
2125 4124 7.854337 TGTACTCCCTCCGTTTCTAAATATTT 58.146 34.615 5.89 5.89 0.00 1.40
2126 4125 7.427989 TGTACTCCCTCCGTTTCTAAATATT 57.572 36.000 0.00 0.00 0.00 1.28
2127 4126 7.613551 ATGTACTCCCTCCGTTTCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
2128 4127 7.418254 GGAATGTACTCCCTCCGTTTCTAAATA 60.418 40.741 0.00 0.00 0.00 1.40
2129 4128 5.952347 ATGTACTCCCTCCGTTTCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
2130 4129 5.337813 GGAATGTACTCCCTCCGTTTCTAAA 60.338 44.000 0.00 0.00 0.00 1.85
2131 4130 4.161001 GGAATGTACTCCCTCCGTTTCTAA 59.839 45.833 0.00 0.00 0.00 2.10
2132 4131 3.703052 GGAATGTACTCCCTCCGTTTCTA 59.297 47.826 0.00 0.00 0.00 2.10
2133 4132 2.500504 GGAATGTACTCCCTCCGTTTCT 59.499 50.000 0.00 0.00 0.00 2.52
2134 4133 2.235402 TGGAATGTACTCCCTCCGTTTC 59.765 50.000 0.00 0.00 34.22 2.78
2135 4134 2.262637 TGGAATGTACTCCCTCCGTTT 58.737 47.619 0.00 0.00 34.22 3.60
2136 4135 1.946984 TGGAATGTACTCCCTCCGTT 58.053 50.000 0.00 0.00 34.22 4.44
2137 4136 2.176247 ATGGAATGTACTCCCTCCGT 57.824 50.000 0.00 0.00 34.22 4.69
2138 4137 2.224305 GGAATGGAATGTACTCCCTCCG 60.224 54.545 0.00 0.00 34.22 4.63
2139 4138 2.777692 TGGAATGGAATGTACTCCCTCC 59.222 50.000 10.37 10.37 37.15 4.30
2140 4139 4.200092 GTTGGAATGGAATGTACTCCCTC 58.800 47.826 0.00 0.00 34.22 4.30
2141 4140 3.370527 CGTTGGAATGGAATGTACTCCCT 60.371 47.826 0.00 0.00 34.22 4.20
2142 4141 2.943033 CGTTGGAATGGAATGTACTCCC 59.057 50.000 0.00 0.00 34.22 4.30
2143 4142 2.354821 GCGTTGGAATGGAATGTACTCC 59.645 50.000 0.00 0.00 35.88 3.85
2144 4143 3.006940 TGCGTTGGAATGGAATGTACTC 58.993 45.455 0.00 0.00 0.00 2.59
2145 4144 3.009723 CTGCGTTGGAATGGAATGTACT 58.990 45.455 0.00 0.00 0.00 2.73
2146 4145 3.006940 TCTGCGTTGGAATGGAATGTAC 58.993 45.455 0.00 0.00 0.00 2.90
2147 4146 3.006940 GTCTGCGTTGGAATGGAATGTA 58.993 45.455 0.00 0.00 0.00 2.29
2148 4147 1.812571 GTCTGCGTTGGAATGGAATGT 59.187 47.619 0.00 0.00 0.00 2.71
2149 4148 1.811965 TGTCTGCGTTGGAATGGAATG 59.188 47.619 0.00 0.00 0.00 2.67
2150 4149 2.198827 TGTCTGCGTTGGAATGGAAT 57.801 45.000 0.00 0.00 0.00 3.01
2151 4150 1.811965 CATGTCTGCGTTGGAATGGAA 59.188 47.619 0.00 0.00 0.00 3.53
2354 4358 2.930562 AGGAAGCCCCAAGTCGCT 60.931 61.111 0.00 0.00 37.41 4.93
2387 4392 2.109181 GTATGGCCTGAGGTCGCC 59.891 66.667 3.32 0.00 45.92 5.54
2390 4395 0.839946 ATGGTGTATGGCCTGAGGTC 59.160 55.000 3.32 0.00 0.00 3.85
2391 4396 0.548031 CATGGTGTATGGCCTGAGGT 59.452 55.000 3.32 0.00 32.95 3.85
2392 4397 3.409201 CATGGTGTATGGCCTGAGG 57.591 57.895 3.32 0.00 32.95 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.