AutoCloner

Multiple sequence alignment - TraesCS1B01G127100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G127100	chr1B	100.000	2474	0	0	1	2474	155744717	155747190	0.000000e+00	4569
1	TraesCS1B01G127100	chr1B	91.716	169	9	1	1688	1856	623937188	623937025	1.910000e-56	230
2	TraesCS1B01G127100	chr6B	93.812	1713	92	8	1	1703	457228263	457229971	0.000000e+00	2564
3	TraesCS1B01G127100	chr6B	91.455	1732	119	12	1	1705	89608168	89606439	0.000000e+00	2351
4	TraesCS1B01G127100	chr3D	94.664	1668	63	5	61	1705	81833244	81834908	0.000000e+00	2564
5	TraesCS1B01G127100	chr3D	94.631	149	8	0	1708	1856	441197551	441197699	5.320000e-57	231
6	TraesCS1B01G127100	chr3D	90.341	176	12	1	1682	1857	6289170	6289340	2.480000e-55	226
7	TraesCS1B01G127100	chr2D	91.270	1913	104	23	1	1856	88299268	88301174	0.000000e+00	2549
8	TraesCS1B01G127100	chr3B	93.558	1692	88	6	33	1705	804610169	804611858	0.000000e+00	2501
9	TraesCS1B01G127100	chr3B	94.631	149	8	0	1706	1854	804611896	804612044	5.320000e-57	231
10	TraesCS1B01G127100	chr7B	94.004	1651	91	5	61	1705	43687149	43688797	0.000000e+00	2494
11	TraesCS1B01G127100	chr7B	93.375	317	20	1	1390	1705	621906520	621906836	3.730000e-128	468
12	TraesCS1B01G127100	chr7B	93.421	228	15	0	1478	1705	126963899	126964126	3.050000e-89	339
13	TraesCS1B01G127100	chr7D	92.016	1766	77	10	1	1705	433075700	433077462	0.000000e+00	2422
14	TraesCS1B01G127100	chr7D	90.286	175	12	1	1682	1856	182493761	182493930	8.900000e-55	224
15	TraesCS1B01G127100	chr7D	89.941	169	12	1	1688	1856	535799560	535799397	1.930000e-51	213
16	TraesCS1B01G127100	chr2B	92.184	1740	95	17	1	1709	116318064	116319793	0.000000e+00	2422
17	TraesCS1B01G127100	chr6D	90.126	1742	109	27	1	1705	446604832	446603117	0.000000e+00	2206
18	TraesCS1B01G127100	chr1D	89.914	1745	117	25	1	1707	369900347	369902070	0.000000e+00	2193
19	TraesCS1B01G127100	chr1D	90.545	624	27	17	1856	2474	97534757	97534161	0.000000e+00	797
20	TraesCS1B01G127100	chr1D	90.805	174	10	2	1688	1860	429021707	429021875	6.880000e-56	228
21	TraesCS1B01G127100	chr7A	94.156	154	9	0	1703	1856	221706502	221706655	4.110000e-58	235
22	TraesCS1B01G127100	chr5B	90.116	172	12	1	1688	1859	103528127	103527961	4.140000e-53	219
23	TraesCS1B01G127100	chr4D	90.533	169	11	1	1688	1856	116523004	116522841	4.140000e-53	219

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G127100	chr1B	155744717	155747190	2473	False	4569	4569	100.0000	1	2474	1	chr1B.!!$F1	2473
1	TraesCS1B01G127100	chr6B	457228263	457229971	1708	False	2564	2564	93.8120	1	1703	1	chr6B.!!$F1	1702
2	TraesCS1B01G127100	chr6B	89606439	89608168	1729	True	2351	2351	91.4550	1	1705	1	chr6B.!!$R1	1704
3	TraesCS1B01G127100	chr3D	81833244	81834908	1664	False	2564	2564	94.6640	61	1705	1	chr3D.!!$F2	1644
4	TraesCS1B01G127100	chr2D	88299268	88301174	1906	False	2549	2549	91.2700	1	1856	1	chr2D.!!$F1	1855
5	TraesCS1B01G127100	chr3B	804610169	804612044	1875	False	1366	2501	94.0945	33	1854	2	chr3B.!!$F1	1821
6	TraesCS1B01G127100	chr7B	43687149	43688797	1648	False	2494	2494	94.0040	61	1705	1	chr7B.!!$F1	1644
7	TraesCS1B01G127100	chr7D	433075700	433077462	1762	False	2422	2422	92.0160	1	1705	1	chr7D.!!$F2	1704
8	TraesCS1B01G127100	chr2B	116318064	116319793	1729	False	2422	2422	92.1840	1	1709	1	chr2B.!!$F1	1708
9	TraesCS1B01G127100	chr6D	446603117	446604832	1715	True	2206	2206	90.1260	1	1705	1	chr6D.!!$R1	1704
10	TraesCS1B01G127100	chr1D	369900347	369902070	1723	False	2193	2193	89.9140	1	1707	1	chr1D.!!$F1	1706
11	TraesCS1B01G127100	chr1D	97534161	97534757	596	True	797	797	90.5450	1856	2474	1	chr1D.!!$R1	618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
293	335	0.173708	GCGGAGTCAAGGTCGATCTT	59.826	55.0	4.73	4.73	0.0	2.40	F
523	568	0.299895	GCGAATGATGTCAGCTGTCG	59.700	55.0	14.67	14.43	0.0	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1162	1242	0.250467	ATGCACTCAAGCTTCGGTGT	60.250	50.0	21.75	7.63	34.99	4.16	R
1669	1773	0.321996	TGTATGCAACGCCTGGTGTA	59.678	50.0	14.17	0.00	0.00	2.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	2.643304	GGGGAATGGGGAATAGAGGTAC	59.357	54.545	0.00	0.00	0.00	3.34
52	55	5.013079	TGGGGAATAGAGGTACATAAGCATG	59.987	44.000	0.00	0.00	38.21	4.06
56	59	7.178628	GGGAATAGAGGTACATAAGCATGTAGA	59.821	40.741	0.00	0.00	45.97	2.59
57	60	8.247562	GGAATAGAGGTACATAAGCATGTAGAG	58.752	40.741	0.00	0.00	45.97	2.43
58	61	7.710676	ATAGAGGTACATAAGCATGTAGAGG	57.289	40.000	0.00	0.00	45.97	3.69
239	272	2.237143	TGGCCTTCATCTTCTTCATCGT	59.763	45.455	3.32	0.00	0.00	3.73
245	278	1.590238	CATCTTCTTCATCGTCGTGCC	59.410	52.381	0.00	0.00	0.00	5.01
282	324	4.710167	TCGTCCTCGGCGGAGTCA	62.710	66.667	18.79	3.59	44.20	3.41
293	335	0.173708	GCGGAGTCAAGGTCGATCTT	59.826	55.000	4.73	4.73	0.00	2.40
353	398	1.003233	GCACCGCTTCTTCCTCCTT	60.003	57.895	0.00	0.00	0.00	3.36
517	562	1.442526	GGCCCAGCGAATGATGTCAG	61.443	60.000	0.00	0.00	0.00	3.51
521	566	3.849002	AGCGAATGATGTCAGCTGT	57.151	47.368	14.67	0.00	36.73	4.40
523	568	0.299895	GCGAATGATGTCAGCTGTCG	59.700	55.000	14.67	14.43	0.00	4.35
863	920	2.099405	GAGGAGGAGAAGAGTGACAGG	58.901	57.143	0.00	0.00	0.00	4.00
906	963	4.880696	GCTCTTCAATAAGCCATGAACTCT	59.119	41.667	0.00	0.00	32.46	3.24
907	964	5.220815	GCTCTTCAATAAGCCATGAACTCTG	60.221	44.000	0.00	0.00	32.46	3.35
965	1038	1.001641	GCAATGAGGTGCTCCCAGT	60.002	57.895	0.00	0.00	41.51	4.00
985	1058	1.021202	CGTTGACAACAAGGGCAAGA	58.979	50.000	18.09	0.00	37.97	3.02
1189	1269	0.682209	GCTTGAGTGCATCCCCATGT	60.682	55.000	0.00	0.00	31.86	3.21
1203	1283	0.987294	CCATGTCCCTGGACTTCACT	59.013	55.000	16.81	0.00	44.80	3.41
1591	1694	8.824756	AAGTAGTGATCCTCTGTTTATACTCA	57.175	34.615	0.00	0.00	0.00	3.41
1667	1771	4.583073	CACCAACTAGCCAAAAAGGTTACT	59.417	41.667	0.00	0.00	40.61	2.24
1669	1773	6.433093	CACCAACTAGCCAAAAAGGTTACTAT	59.567	38.462	0.00	0.00	40.61	2.12
1705	1809	0.752054	ACAACCAAACACCATGCCTG	59.248	50.000	0.00	0.00	0.00	4.85
1737	1878	0.913934	TGCCCATGCAGGTAAGAGGA	60.914	55.000	0.00	0.00	44.23	3.71
1801	1942	0.387929	CATTTGCATAGCCAGGCTGG	59.612	55.000	29.44	29.44	40.10	4.85
1840	1981	0.108804	GCAGCTACTGTTGGCTACGA	60.109	55.000	7.45	0.00	37.00	3.43
1866	2007	2.554032	CAAACACGCCCAAGATTCTCTT	59.446	45.455	0.00	0.00	37.14	2.85
1874	2015	2.205022	CAAGATTCTCTTGCCCACCA	57.795	50.000	4.10	0.00	46.03	4.17
1921	2062	2.836154	GGTGGCTGGGTTGAGTCA	59.164	61.111	0.00	0.00	0.00	3.41
1944	2085	2.878406	ACAAGTGAACAACAATCCTCCG	59.122	45.455	0.00	0.00	0.00	4.63
1948	2089	2.737252	GTGAACAACAATCCTCCGAGTC	59.263	50.000	0.00	0.00	0.00	3.36
1954	2095	1.821753	ACAATCCTCCGAGTCTGAGTG	59.178	52.381	10.29	5.27	0.00	3.51
1962	2103	1.272490	CCGAGTCTGAGTGCCACTTAA	59.728	52.381	0.00	0.00	0.00	1.85
2043	2184	2.224670	TGGCGTAAAATGAGAAGTGGGT	60.225	45.455	0.00	0.00	0.00	4.51
2065	2206	6.801862	GGGTGAGAAAAGATTATGAAACAACG	59.198	38.462	0.00	0.00	0.00	4.10
2068	2209	7.534239	GTGAGAAAAGATTATGAAACAACGTCC	59.466	37.037	0.00	0.00	0.00	4.79
2096	2237	2.497273	TCAAGATTGAGCATCTCGGACA	59.503	45.455	0.00	0.00	41.93	4.02
2125	2266	4.648762	AGATCTCGAAGATGAAGGTGATGT	59.351	41.667	0.00	0.00	34.53	3.06
2127	2268	5.152623	TCTCGAAGATGAAGGTGATGTTT	57.847	39.130	0.00	0.00	33.89	2.83
2128	2269	5.551233	TCTCGAAGATGAAGGTGATGTTTT	58.449	37.500	0.00	0.00	33.89	2.43
2129	2270	5.997746	TCTCGAAGATGAAGGTGATGTTTTT	59.002	36.000	0.00	0.00	33.89	1.94
2165	2306	2.901975	TGAGAAGCCTCACGCCTAT	58.098	52.632	0.00	0.00	44.01	2.57
2166	2307	2.067365	TGAGAAGCCTCACGCCTATA	57.933	50.000	0.00	0.00	44.01	1.31
2167	2308	2.598565	TGAGAAGCCTCACGCCTATAT	58.401	47.619	0.00	0.00	44.01	0.86
2168	2309	2.558795	TGAGAAGCCTCACGCCTATATC	59.441	50.000	0.00	0.00	44.01	1.63
2169	2310	2.823154	GAGAAGCCTCACGCCTATATCT	59.177	50.000	0.00	0.00	39.24	1.98
2170	2311	2.823154	AGAAGCCTCACGCCTATATCTC	59.177	50.000	0.00	0.00	38.78	2.75
2171	2312	1.169577	AGCCTCACGCCTATATCTCG	58.830	55.000	0.00	0.00	38.78	4.04
2172	2313	0.456995	GCCTCACGCCTATATCTCGC	60.457	60.000	0.00	0.00	0.00	5.03
2173	2314	0.171455	CCTCACGCCTATATCTCGCC	59.829	60.000	0.00	0.00	0.00	5.54
2174	2315	0.171455	CTCACGCCTATATCTCGCCC	59.829	60.000	0.00	0.00	0.00	6.13
2175	2316	0.538746	TCACGCCTATATCTCGCCCA	60.539	55.000	0.00	0.00	0.00	5.36
2176	2317	0.109086	CACGCCTATATCTCGCCCAG	60.109	60.000	0.00	0.00	0.00	4.45
2177	2318	0.251209	ACGCCTATATCTCGCCCAGA	60.251	55.000	0.00	0.00	34.78	3.86
2178	2319	1.107114	CGCCTATATCTCGCCCAGAT	58.893	55.000	0.00	0.00	44.73	2.90
2179	2320	1.202348	CGCCTATATCTCGCCCAGATG	60.202	57.143	3.50	0.00	42.37	2.90
2180	2321	2.103373	GCCTATATCTCGCCCAGATGA	58.897	52.381	3.50	0.00	42.37	2.92
2321	2462	3.799420	GTGGATAGAGAGATTGCGTGAAC	59.201	47.826	0.00	0.00	0.00	3.18
2322	2463	3.447229	TGGATAGAGAGATTGCGTGAACA	59.553	43.478	0.00	0.00	0.00	3.18
2333	2474	0.665835	GCGTGAACACCATGACCAAA	59.334	50.000	0.00	0.00	33.60	3.28
2342	2487	2.811431	CACCATGACCAAAACGCTTCTA	59.189	45.455	0.00	0.00	0.00	2.10
2380	2525	4.377370	TGAGGAACACATGTGCGG	57.623	55.556	25.68	2.62	0.00	5.69
2381	2526	1.751563	TGAGGAACACATGTGCGGA	59.248	52.632	25.68	1.25	0.00	5.54
2396	2541	1.605058	GCGGAGGAGTGTAGGCTTGA	61.605	60.000	0.00	0.00	0.00	3.02
2401	2546	3.057174	GGAGGAGTGTAGGCTTGATATCG	60.057	52.174	0.00	0.00	0.00	2.92
2447	2592	6.836007	AGAGAAAGGAACAAAAGTGAAGGATT	59.164	34.615	0.00	0.00	0.00	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	1.299942	TCTATTCCCCATTCCCCTCCA	59.700	52.381	0.00	0.00	0.00	3.86
43	44	8.580720	AGTATGAACTACCTCTACATGCTTATG	58.419	37.037	0.00	0.00	32.03	1.90
217	247	3.273434	CGATGAAGAAGATGAAGGCCAA	58.727	45.455	5.01	0.00	0.00	4.52
282	324	1.749634	CGTACCTGGAAGATCGACCTT	59.250	52.381	0.00	0.00	34.07	3.50
333	375	1.302511	GGAGGAAGAAGCGGTGCAA	60.303	57.895	0.00	0.00	0.00	4.08
353	398	1.048724	CATCGGTGGGGAGCCTAAGA	61.049	60.000	0.00	0.00	0.00	2.10
537	584	1.519455	GACGCTGATTCCTGACCCG	60.519	63.158	0.00	0.00	0.00	5.28
906	963	0.473755	ATGGAGTCAGGCACAACACA	59.526	50.000	0.00	0.00	0.00	3.72
907	964	0.877071	CATGGAGTCAGGCACAACAC	59.123	55.000	0.00	0.00	0.00	3.32
965	1038	1.021202	CTTGCCCTTGTTGTCAACGA	58.979	50.000	11.03	8.28	0.00	3.85
985	1058	0.835971	GGCATTGGGTGAAGGGGTTT	60.836	55.000	0.00	0.00	0.00	3.27
1162	1242	0.250467	ATGCACTCAAGCTTCGGTGT	60.250	50.000	21.75	7.63	34.99	4.16
1189	1269	1.623811	GTGCTTAGTGAAGTCCAGGGA	59.376	52.381	0.00	0.00	34.90	4.20
1591	1694	3.087031	AGCACACATCATAAGCAAAGCT	58.913	40.909	0.00	0.00	42.56	3.74
1667	1771	2.168728	TGTATGCAACGCCTGGTGTATA	59.831	45.455	14.17	5.33	0.00	1.47
1669	1773	0.321996	TGTATGCAACGCCTGGTGTA	59.678	50.000	14.17	0.00	0.00	2.90
1730	1871	1.340017	GGTTGCCTGCATGTCCTCTTA	60.340	52.381	0.00	0.00	0.00	2.10
1737	1878	0.829333	TTGTTTGGTTGCCTGCATGT	59.171	45.000	0.00	0.00	0.00	3.21
1801	1942	2.223665	GCATTGCATAGCCTTCTCAACC	60.224	50.000	3.15	0.00	0.00	3.77
1840	1981	0.681564	TCTTGGGCGTGTTTGGTTGT	60.682	50.000	0.00	0.00	0.00	3.32
1866	2007	1.074775	GACACTCCAATGGTGGGCA	59.925	57.895	3.13	0.00	46.01	5.36
1909	2050	3.278574	TCACTTGTTTGACTCAACCCAG	58.721	45.455	0.00	0.00	0.00	4.45
1921	2062	4.202010	CGGAGGATTGTTGTTCACTTGTTT	60.202	41.667	0.00	0.00	0.00	2.83
1944	2085	3.681897	CACATTAAGTGGCACTCAGACTC	59.318	47.826	22.31	0.00	44.69	3.36
2008	2149	8.902806	TCATTTTACGCCATATTCTCATTTCTT	58.097	29.630	0.00	0.00	0.00	2.52
2016	2157	6.260936	CCACTTCTCATTTTACGCCATATTCT	59.739	38.462	0.00	0.00	0.00	2.40
2022	2163	2.224670	ACCCACTTCTCATTTTACGCCA	60.225	45.455	0.00	0.00	0.00	5.69
2043	2184	7.227711	TGGACGTTGTTTCATAATCTTTTCTCA	59.772	33.333	0.00	0.00	0.00	3.27
2065	2206	2.679349	GCTCAATCTTGACCTCCTGGAC	60.679	54.545	0.00	0.00	37.04	4.02
2068	2209	2.775911	TGCTCAATCTTGACCTCCTG	57.224	50.000	0.00	0.00	32.90	3.86
2092	2233	4.920640	TCTTCGAGATCTATGGTTGTCC	57.079	45.455	0.00	0.00	0.00	4.02
2096	2237	5.600484	ACCTTCATCTTCGAGATCTATGGTT	59.400	40.000	0.00	0.00	31.32	3.67
2160	2301	2.100584	CTCATCTGGGCGAGATATAGGC	59.899	54.545	11.87	0.00	39.64	3.93
2161	2302	3.625853	TCTCATCTGGGCGAGATATAGG	58.374	50.000	11.87	0.18	39.64	2.57
2162	2303	4.522114	TCTCTCATCTGGGCGAGATATAG	58.478	47.826	11.87	12.05	39.64	1.31
2163	2304	4.576330	TCTCTCATCTGGGCGAGATATA	57.424	45.455	11.87	2.98	39.64	0.86
2165	2306	2.959465	TCTCTCATCTGGGCGAGATA	57.041	50.000	11.87	0.00	39.64	1.98
2166	2307	2.079170	TTCTCTCATCTGGGCGAGAT	57.921	50.000	6.15	6.15	42.70	2.75
2167	2308	1.852633	TTTCTCTCATCTGGGCGAGA	58.147	50.000	0.46	0.46	36.81	4.04
2168	2309	2.102084	TGATTTCTCTCATCTGGGCGAG	59.898	50.000	0.00	0.00	0.00	5.03
2169	2310	2.110578	TGATTTCTCTCATCTGGGCGA	58.889	47.619	0.00	0.00	0.00	5.54
2170	2311	2.609427	TGATTTCTCTCATCTGGGCG	57.391	50.000	0.00	0.00	0.00	6.13
2171	2312	3.626670	CACTTGATTTCTCTCATCTGGGC	59.373	47.826	0.00	0.00	0.00	5.36
2172	2313	4.080695	TCCACTTGATTTCTCTCATCTGGG	60.081	45.833	0.00	0.00	0.00	4.45
2173	2314	5.095145	TCCACTTGATTTCTCTCATCTGG	57.905	43.478	0.00	0.00	0.00	3.86
2174	2315	6.404708	TCTTCCACTTGATTTCTCTCATCTG	58.595	40.000	0.00	0.00	0.00	2.90
2175	2316	6.440010	TCTCTTCCACTTGATTTCTCTCATCT	59.560	38.462	0.00	0.00	0.00	2.90
2176	2317	6.638610	TCTCTTCCACTTGATTTCTCTCATC	58.361	40.000	0.00	0.00	0.00	2.92
2177	2318	6.617782	TCTCTTCCACTTGATTTCTCTCAT	57.382	37.500	0.00	0.00	0.00	2.90
2178	2319	5.568423	GCTCTCTTCCACTTGATTTCTCTCA	60.568	44.000	0.00	0.00	0.00	3.27
2179	2320	4.869861	GCTCTCTTCCACTTGATTTCTCTC	59.130	45.833	0.00	0.00	0.00	3.20
2180	2321	4.323409	GGCTCTCTTCCACTTGATTTCTCT	60.323	45.833	0.00	0.00	0.00	3.10
2253	2394	6.884472	TTGGATGACAACTCCTCCTTTATA	57.116	37.500	0.00	0.00	33.18	0.98
2321	2462	1.608590	AGAAGCGTTTTGGTCATGGTG	59.391	47.619	0.00	0.00	0.00	4.17
2322	2463	1.981256	AGAAGCGTTTTGGTCATGGT	58.019	45.000	0.00	0.00	0.00	3.55
2333	2474	4.396166	CCTCCATCACAATTTAGAAGCGTT	59.604	41.667	0.00	0.00	0.00	4.84
2342	2487	3.828451	CACCTCAACCTCCATCACAATTT	59.172	43.478	0.00	0.00	0.00	1.82
2379	2524	3.057174	CGATATCAAGCCTACACTCCTCC	60.057	52.174	3.12	0.00	0.00	4.30
2380	2525	3.821600	TCGATATCAAGCCTACACTCCTC	59.178	47.826	3.12	0.00	0.00	3.71
2381	2526	3.823873	CTCGATATCAAGCCTACACTCCT	59.176	47.826	3.12	0.00	0.00	3.69
2396	2541	1.614413	GTTTCCTCTCGGCCTCGATAT	59.386	52.381	0.00	0.00	45.04	1.63
2401	2546	2.115343	ATTTGTTTCCTCTCGGCCTC	57.885	50.000	0.00	0.00	0.00	4.70
2405	2550	6.092807	CCTTTCTCTTATTTGTTTCCTCTCGG	59.907	42.308	0.00	0.00	0.00	4.63
2406	2551	6.874134	TCCTTTCTCTTATTTGTTTCCTCTCG	59.126	38.462	0.00	0.00	0.00	4.04
2408	2553	7.998964	TGTTCCTTTCTCTTATTTGTTTCCTCT	59.001	33.333	0.00	0.00	0.00	3.69
2420	2565	7.343357	TCCTTCACTTTTGTTCCTTTCTCTTA	58.657	34.615	0.00	0.00	0.00	2.10
2439	2584	5.698104	AGCATCCATGAACATAATCCTTCA	58.302	37.500	0.00	0.00	0.00	3.02
2447	2592	3.599343	GCCGATAGCATCCATGAACATA	58.401	45.455	0.00	0.00	42.97	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.