Multiple sequence alignment - TraesCS1B01G125400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G125400 chr1B 100.000 4050 0 0 1 4050 152525570 152521521 0.000000e+00 7480.0
1 TraesCS1B01G125400 chr1B 84.720 661 65 17 1499 2140 22894700 22895343 2.660000e-176 628.0
2 TraesCS1B01G125400 chr1B 86.425 442 45 4 3267 3699 152502426 152501991 1.700000e-128 470.0
3 TraesCS1B01G125400 chr1B 83.969 262 33 5 3758 4019 152501772 152501520 4.040000e-60 243.0
4 TraesCS1B01G125400 chr1B 100.000 34 0 0 4015 4048 152450963 152450930 3.380000e-06 63.9
5 TraesCS1B01G125400 chr1A 87.238 2954 194 90 420 3270 95182796 95185669 0.000000e+00 3197.0
6 TraesCS1B01G125400 chr1A 91.018 167 9 3 3267 3432 95185810 95185971 1.890000e-53 220.0
7 TraesCS1B01G125400 chr1D 86.750 2151 148 67 466 2523 99800867 99802973 0.000000e+00 2266.0
8 TraesCS1B01G125400 chr1D 90.981 754 56 9 2523 3270 99803719 99804466 0.000000e+00 1005.0
9 TraesCS1B01G125400 chr1D 86.427 361 22 13 1445 1778 19790932 19791292 1.780000e-98 370.0
10 TraesCS1B01G125400 chr1D 94.152 171 10 0 3877 4047 99805119 99805289 1.120000e-65 261.0
11 TraesCS1B01G125400 chr1D 87.143 210 23 4 5 212 115319758 115319965 6.770000e-58 235.0
12 TraesCS1B01G125400 chr1D 85.714 210 29 1 1 209 430807288 430807497 1.890000e-53 220.0
13 TraesCS1B01G125400 chr1D 85.646 209 29 1 5 212 119198530 119198322 6.820000e-53 219.0
14 TraesCS1B01G125400 chr1D 75.758 297 32 26 3510 3799 99804781 99805044 3.310000e-21 113.0
15 TraesCS1B01G125400 chr1D 90.541 74 7 0 271 344 99800713 99800786 9.260000e-17 99.0
16 TraesCS1B01G125400 chr2D 85.994 2142 184 53 1183 3270 646417625 646419704 0.000000e+00 2187.0
17 TraesCS1B01G125400 chr2D 90.559 286 15 5 1505 1778 140467437 140467722 6.400000e-98 368.0
18 TraesCS1B01G125400 chr2D 82.353 153 15 7 980 1132 646417467 646417607 5.500000e-24 122.0
19 TraesCS1B01G125400 chr2D 86.869 99 13 0 752 850 646417263 646417361 1.190000e-20 111.0
20 TraesCS1B01G125400 chr2A 83.463 2183 176 71 969 3079 773230940 773228871 0.000000e+00 1860.0
21 TraesCS1B01G125400 chr2A 87.440 207 23 3 8 212 377162069 377161864 6.770000e-58 235.0
22 TraesCS1B01G125400 chr2A 84.848 99 11 3 755 849 773231143 773231045 3.330000e-16 97.1
23 TraesCS1B01G125400 chr2B 86.748 1630 131 36 1498 3079 789265306 789263714 0.000000e+00 1735.0
24 TraesCS1B01G125400 chr2B 83.755 277 24 11 980 1256 789265871 789265616 4.040000e-60 243.0
25 TraesCS1B01G125400 chr3B 84.853 614 58 15 1505 2098 350128815 350128217 1.620000e-163 586.0
26 TraesCS1B01G125400 chr3B 81.789 313 31 10 2095 2407 350032334 350032048 5.230000e-59 239.0
27 TraesCS1B01G125400 chr5A 87.368 285 21 7 1505 1779 60211961 60211682 3.040000e-81 313.0
28 TraesCS1B01G125400 chr5A 87.081 209 26 1 5 212 533572679 533572887 6.770000e-58 235.0
29 TraesCS1B01G125400 chr5B 87.365 277 17 11 1501 1775 468897313 468897573 6.580000e-78 302.0
30 TraesCS1B01G125400 chr6A 86.786 280 19 11 1501 1778 496045799 496045536 3.060000e-76 296.0
31 TraesCS1B01G125400 chr5D 88.517 209 23 1 5 212 232143821 232143613 6.720000e-63 252.0
32 TraesCS1B01G125400 chr5D 86.603 209 27 1 5 212 266287724 266287516 3.150000e-56 230.0
33 TraesCS1B01G125400 chr5D 86.473 207 25 3 5 209 329657563 329657768 1.460000e-54 224.0
34 TraesCS1B01G125400 chr6D 85.646 209 29 1 5 212 267731409 267731201 6.820000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G125400 chr1B 152521521 152525570 4049 True 7480.000000 7480 100.0000 1 4050 1 chr1B.!!$R2 4049
1 TraesCS1B01G125400 chr1B 22894700 22895343 643 False 628.000000 628 84.7200 1499 2140 1 chr1B.!!$F1 641
2 TraesCS1B01G125400 chr1B 152501520 152502426 906 True 356.500000 470 85.1970 3267 4019 2 chr1B.!!$R3 752
3 TraesCS1B01G125400 chr1A 95182796 95185971 3175 False 1708.500000 3197 89.1280 420 3432 2 chr1A.!!$F1 3012
4 TraesCS1B01G125400 chr1D 99800713 99805289 4576 False 748.800000 2266 87.6364 271 4047 5 chr1D.!!$F4 3776
5 TraesCS1B01G125400 chr2D 646417263 646419704 2441 False 806.666667 2187 85.0720 752 3270 3 chr2D.!!$F2 2518
6 TraesCS1B01G125400 chr2A 773228871 773231143 2272 True 978.550000 1860 84.1555 755 3079 2 chr2A.!!$R2 2324
7 TraesCS1B01G125400 chr2B 789263714 789265871 2157 True 989.000000 1735 85.2515 980 3079 2 chr2B.!!$R1 2099
8 TraesCS1B01G125400 chr3B 350128217 350128815 598 True 586.000000 586 84.8530 1505 2098 1 chr3B.!!$R2 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.032815 TTGAACCACGATGTCGCTGA 59.967 50.0 1.77 0.00 44.43 4.26 F
415 416 0.035630 CAGGCCTCCCTCTTCAACAG 60.036 60.0 0.00 0.00 40.33 3.16 F
654 659 0.108019 GGTTTGGTCCGACTTCAGGT 59.892 55.0 0.00 0.00 0.00 4.00 F
1906 2182 0.392461 TTCTGCGAGGTACCCATTGC 60.392 55.0 8.74 7.38 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1925 0.177604 GGGGATCAGTCAGCTGTCAG 59.822 60.0 14.67 5.21 43.05 3.51 R
1705 1926 0.252421 AGGGGATCAGTCAGCTGTCA 60.252 55.0 14.67 0.00 43.05 3.58 R
2365 2682 0.375106 GCCTGAAGACAATGCTACGC 59.625 55.0 0.00 0.00 0.00 4.42 R
3453 4700 0.250597 AGCTGCACATCTGTCAAGCA 60.251 50.0 1.02 5.46 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.431942 CGTTAAGCGTGCGGACCT 60.432 61.111 0.00 0.00 35.54 3.85
24 25 2.025418 CGTTAAGCGTGCGGACCTT 61.025 57.895 13.48 13.48 35.54 3.50
25 26 0.733566 CGTTAAGCGTGCGGACCTTA 60.734 55.000 11.87 11.87 35.54 2.69
26 27 1.648504 GTTAAGCGTGCGGACCTTAT 58.351 50.000 15.08 0.00 0.00 1.73
27 28 2.795681 CGTTAAGCGTGCGGACCTTATA 60.796 50.000 15.08 7.16 35.54 0.98
28 29 3.387397 GTTAAGCGTGCGGACCTTATAT 58.613 45.455 15.08 0.00 0.00 0.86
29 30 1.865865 AAGCGTGCGGACCTTATATG 58.134 50.000 0.00 0.00 0.00 1.78
30 31 0.750850 AGCGTGCGGACCTTATATGT 59.249 50.000 0.00 0.00 0.00 2.29
31 32 1.138266 AGCGTGCGGACCTTATATGTT 59.862 47.619 0.00 0.00 0.00 2.71
32 33 1.525619 GCGTGCGGACCTTATATGTTC 59.474 52.381 0.00 0.00 0.00 3.18
33 34 1.784856 CGTGCGGACCTTATATGTTCG 59.215 52.381 0.00 0.41 37.77 3.95
34 35 2.542205 CGTGCGGACCTTATATGTTCGA 60.542 50.000 0.00 0.00 36.84 3.71
35 36 3.050619 GTGCGGACCTTATATGTTCGAG 58.949 50.000 7.57 0.00 36.84 4.04
36 37 2.953648 TGCGGACCTTATATGTTCGAGA 59.046 45.455 7.57 0.00 36.84 4.04
37 38 3.382227 TGCGGACCTTATATGTTCGAGAA 59.618 43.478 7.57 0.00 36.84 2.87
38 39 4.038763 TGCGGACCTTATATGTTCGAGAAT 59.961 41.667 7.57 0.00 36.84 2.40
39 40 4.621886 GCGGACCTTATATGTTCGAGAATC 59.378 45.833 7.57 0.00 36.84 2.52
40 41 5.769367 CGGACCTTATATGTTCGAGAATCA 58.231 41.667 0.00 0.00 36.84 2.57
41 42 6.390721 CGGACCTTATATGTTCGAGAATCAT 58.609 40.000 0.00 0.00 36.84 2.45
42 43 6.309009 CGGACCTTATATGTTCGAGAATCATG 59.691 42.308 0.00 0.00 36.84 3.07
43 44 7.155328 GGACCTTATATGTTCGAGAATCATGT 58.845 38.462 0.00 6.87 33.17 3.21
44 45 8.304596 GGACCTTATATGTTCGAGAATCATGTA 58.695 37.037 0.00 6.21 33.17 2.29
45 46 9.347934 GACCTTATATGTTCGAGAATCATGTAG 57.652 37.037 0.00 0.00 33.17 2.74
46 47 9.078990 ACCTTATATGTTCGAGAATCATGTAGA 57.921 33.333 0.00 0.00 33.17 2.59
47 48 9.347934 CCTTATATGTTCGAGAATCATGTAGAC 57.652 37.037 0.00 0.00 33.17 2.59
48 49 9.899226 CTTATATGTTCGAGAATCATGTAGACA 57.101 33.333 0.00 0.00 33.17 3.41
60 61 3.610040 ATGTAGACATGACCGAAGCAA 57.390 42.857 0.00 0.00 34.83 3.91
61 62 3.610040 TGTAGACATGACCGAAGCAAT 57.390 42.857 0.00 0.00 0.00 3.56
62 63 3.937814 TGTAGACATGACCGAAGCAATT 58.062 40.909 0.00 0.00 0.00 2.32
63 64 3.932710 TGTAGACATGACCGAAGCAATTC 59.067 43.478 0.00 0.00 0.00 2.17
64 65 3.340814 AGACATGACCGAAGCAATTCT 57.659 42.857 0.00 0.00 0.00 2.40
65 66 3.265791 AGACATGACCGAAGCAATTCTC 58.734 45.455 0.00 0.00 0.00 2.87
66 67 3.055530 AGACATGACCGAAGCAATTCTCT 60.056 43.478 0.00 0.00 0.00 3.10
67 68 3.005554 ACATGACCGAAGCAATTCTCTG 58.994 45.455 0.00 0.00 0.00 3.35
68 69 2.099141 TGACCGAAGCAATTCTCTGG 57.901 50.000 0.00 0.00 0.00 3.86
69 70 1.347707 TGACCGAAGCAATTCTCTGGT 59.652 47.619 0.00 0.00 35.61 4.00
70 71 2.003301 GACCGAAGCAATTCTCTGGTC 58.997 52.381 0.00 0.00 39.92 4.02
71 72 1.347707 ACCGAAGCAATTCTCTGGTCA 59.652 47.619 0.00 0.00 29.24 4.02
72 73 2.224523 ACCGAAGCAATTCTCTGGTCAA 60.225 45.455 0.00 0.00 29.24 3.18
73 74 3.012518 CCGAAGCAATTCTCTGGTCAAT 58.987 45.455 0.00 0.00 0.00 2.57
74 75 4.191544 CCGAAGCAATTCTCTGGTCAATA 58.808 43.478 0.00 0.00 0.00 1.90
75 76 4.635765 CCGAAGCAATTCTCTGGTCAATAA 59.364 41.667 0.00 0.00 0.00 1.40
76 77 5.123820 CCGAAGCAATTCTCTGGTCAATAAA 59.876 40.000 0.00 0.00 0.00 1.40
77 78 6.349280 CCGAAGCAATTCTCTGGTCAATAAAA 60.349 38.462 0.00 0.00 0.00 1.52
78 79 7.083858 CGAAGCAATTCTCTGGTCAATAAAAA 58.916 34.615 0.00 0.00 0.00 1.94
95 96 1.680338 AAAATAGCGGACCTGGATGC 58.320 50.000 0.00 0.60 0.00 3.91
96 97 0.179018 AAATAGCGGACCTGGATGCC 60.179 55.000 0.00 0.00 0.00 4.40
97 98 2.056906 AATAGCGGACCTGGATGCCC 62.057 60.000 0.00 0.00 0.00 5.36
98 99 3.993865 TAGCGGACCTGGATGCCCA 62.994 63.158 0.00 0.00 40.95 5.36
99 100 4.195334 GCGGACCTGGATGCCCAT 62.195 66.667 0.00 0.00 42.59 4.00
100 101 2.818169 GCGGACCTGGATGCCCATA 61.818 63.158 0.00 0.00 42.59 2.74
101 102 2.069776 CGGACCTGGATGCCCATAT 58.930 57.895 0.00 0.00 42.59 1.78
102 103 0.401738 CGGACCTGGATGCCCATATT 59.598 55.000 0.00 0.00 42.59 1.28
103 104 1.883638 CGGACCTGGATGCCCATATTG 60.884 57.143 0.00 0.00 42.59 1.90
104 105 1.548582 GGACCTGGATGCCCATATTGG 60.549 57.143 0.00 0.00 42.59 3.16
105 106 1.145738 GACCTGGATGCCCATATTGGT 59.854 52.381 0.00 0.00 42.59 3.67
106 107 1.575304 ACCTGGATGCCCATATTGGTT 59.425 47.619 0.00 0.00 42.59 3.67
107 108 2.242043 CCTGGATGCCCATATTGGTTC 58.758 52.381 0.00 0.00 42.59 3.62
108 109 2.242043 CTGGATGCCCATATTGGTTCC 58.758 52.381 8.97 8.97 42.59 3.62
109 110 1.133199 TGGATGCCCATATTGGTTCCC 60.133 52.381 11.86 4.44 37.58 3.97
110 111 1.133199 GGATGCCCATATTGGTTCCCA 60.133 52.381 5.95 0.00 35.17 4.37
111 112 1.963515 GATGCCCATATTGGTTCCCAC 59.036 52.381 0.00 0.00 35.17 4.61
112 113 0.707024 TGCCCATATTGGTTCCCACA 59.293 50.000 0.00 0.00 35.17 4.17
113 114 1.290431 TGCCCATATTGGTTCCCACAT 59.710 47.619 0.00 0.00 35.17 3.21
114 115 2.515853 TGCCCATATTGGTTCCCACATA 59.484 45.455 0.00 0.00 35.17 2.29
115 116 3.141838 TGCCCATATTGGTTCCCACATAT 59.858 43.478 0.00 0.00 35.17 1.78
116 117 4.159557 GCCCATATTGGTTCCCACATATT 58.840 43.478 0.00 0.00 35.17 1.28
117 118 4.592778 GCCCATATTGGTTCCCACATATTT 59.407 41.667 0.00 0.00 35.17 1.40
118 119 5.511202 GCCCATATTGGTTCCCACATATTTG 60.511 44.000 0.00 0.00 35.17 2.32
119 120 5.837979 CCCATATTGGTTCCCACATATTTGA 59.162 40.000 0.00 0.00 35.17 2.69
120 121 6.239289 CCCATATTGGTTCCCACATATTTGAC 60.239 42.308 0.00 0.00 35.17 3.18
121 122 4.981806 ATTGGTTCCCACATATTTGACG 57.018 40.909 0.00 0.00 30.78 4.35
122 123 3.704800 TGGTTCCCACATATTTGACGA 57.295 42.857 0.00 0.00 0.00 4.20
123 124 4.022413 TGGTTCCCACATATTTGACGAA 57.978 40.909 0.00 0.00 0.00 3.85
124 125 4.006989 TGGTTCCCACATATTTGACGAAG 58.993 43.478 0.00 0.00 0.00 3.79
125 126 4.258543 GGTTCCCACATATTTGACGAAGA 58.741 43.478 0.00 0.00 0.00 2.87
126 127 4.881850 GGTTCCCACATATTTGACGAAGAT 59.118 41.667 0.00 0.00 0.00 2.40
127 128 5.007724 GGTTCCCACATATTTGACGAAGATC 59.992 44.000 0.00 0.00 0.00 2.75
128 129 5.614324 TCCCACATATTTGACGAAGATCT 57.386 39.130 0.00 0.00 0.00 2.75
129 130 5.989477 TCCCACATATTTGACGAAGATCTT 58.011 37.500 7.95 7.95 0.00 2.40
130 131 6.414732 TCCCACATATTTGACGAAGATCTTT 58.585 36.000 9.87 0.00 0.00 2.52
131 132 6.884295 TCCCACATATTTGACGAAGATCTTTT 59.116 34.615 9.87 0.00 0.00 2.27
132 133 8.044309 TCCCACATATTTGACGAAGATCTTTTA 58.956 33.333 9.87 0.00 0.00 1.52
133 134 8.840321 CCCACATATTTGACGAAGATCTTTTAT 58.160 33.333 9.87 0.00 0.00 1.40
134 135 9.869844 CCACATATTTGACGAAGATCTTTTATC 57.130 33.333 9.87 8.30 0.00 1.75
140 141 8.601845 TTTGACGAAGATCTTTTATCAGTTGA 57.398 30.769 9.87 0.00 0.00 3.18
141 142 8.601845 TTGACGAAGATCTTTTATCAGTTGAA 57.398 30.769 9.87 0.00 0.00 2.69
142 143 8.018677 TGACGAAGATCTTTTATCAGTTGAAC 57.981 34.615 9.87 0.00 0.00 3.18
143 144 7.117812 TGACGAAGATCTTTTATCAGTTGAACC 59.882 37.037 9.87 0.00 0.00 3.62
144 145 6.934645 ACGAAGATCTTTTATCAGTTGAACCA 59.065 34.615 9.87 0.00 0.00 3.67
145 146 7.095187 ACGAAGATCTTTTATCAGTTGAACCAC 60.095 37.037 9.87 0.00 0.00 4.16
146 147 6.727824 AGATCTTTTATCAGTTGAACCACG 57.272 37.500 0.00 0.00 0.00 4.94
147 148 6.464222 AGATCTTTTATCAGTTGAACCACGA 58.536 36.000 0.00 0.00 0.00 4.35
148 149 7.106239 AGATCTTTTATCAGTTGAACCACGAT 58.894 34.615 0.00 0.00 0.00 3.73
149 150 6.480524 TCTTTTATCAGTTGAACCACGATG 57.519 37.500 0.00 0.00 0.00 3.84
150 151 5.995282 TCTTTTATCAGTTGAACCACGATGT 59.005 36.000 0.00 0.00 0.00 3.06
151 152 5.856126 TTTATCAGTTGAACCACGATGTC 57.144 39.130 0.00 0.00 0.00 3.06
152 153 1.778334 TCAGTTGAACCACGATGTCG 58.222 50.000 0.11 0.11 46.33 4.35
153 154 0.163788 CAGTTGAACCACGATGTCGC 59.836 55.000 1.77 0.00 44.43 5.19
154 155 0.033504 AGTTGAACCACGATGTCGCT 59.966 50.000 1.77 0.00 44.43 4.93
155 156 0.163788 GTTGAACCACGATGTCGCTG 59.836 55.000 1.77 0.84 44.43 5.18
156 157 0.032815 TTGAACCACGATGTCGCTGA 59.967 50.000 1.77 0.00 44.43 4.26
157 158 0.246360 TGAACCACGATGTCGCTGAT 59.754 50.000 1.77 0.00 44.43 2.90
158 159 1.337728 TGAACCACGATGTCGCTGATT 60.338 47.619 1.77 0.00 44.43 2.57
159 160 1.324736 GAACCACGATGTCGCTGATTC 59.675 52.381 1.77 0.21 44.43 2.52
160 161 0.802222 ACCACGATGTCGCTGATTCG 60.802 55.000 1.77 10.10 44.43 3.34
161 162 1.270968 CACGATGTCGCTGATTCGC 59.729 57.895 1.77 0.00 44.43 4.70
169 170 3.406559 GCTGATTCGCGTAACCCC 58.593 61.111 5.77 0.00 0.00 4.95
170 171 2.522638 GCTGATTCGCGTAACCCCG 61.523 63.158 5.77 0.00 0.00 5.73
171 172 1.153706 CTGATTCGCGTAACCCCGT 60.154 57.895 5.77 0.00 0.00 5.28
172 173 0.101040 CTGATTCGCGTAACCCCGTA 59.899 55.000 5.77 0.00 0.00 4.02
173 174 0.746063 TGATTCGCGTAACCCCGTAT 59.254 50.000 5.77 0.00 0.00 3.06
174 175 1.134226 GATTCGCGTAACCCCGTATG 58.866 55.000 5.77 0.00 0.00 2.39
175 176 0.877213 ATTCGCGTAACCCCGTATGC 60.877 55.000 5.77 0.00 33.43 3.14
176 177 2.202770 CGCGTAACCCCGTATGCA 60.203 61.111 0.00 0.00 36.03 3.96
177 178 1.810441 CGCGTAACCCCGTATGCAA 60.810 57.895 0.00 0.00 36.03 4.08
178 179 1.155424 CGCGTAACCCCGTATGCAAT 61.155 55.000 0.00 0.00 36.03 3.56
179 180 1.018910 GCGTAACCCCGTATGCAATT 58.981 50.000 0.00 0.00 36.25 2.32
180 181 1.402613 GCGTAACCCCGTATGCAATTT 59.597 47.619 0.00 0.00 36.25 1.82
181 182 2.540157 GCGTAACCCCGTATGCAATTTC 60.540 50.000 0.00 0.00 36.25 2.17
182 183 2.032426 CGTAACCCCGTATGCAATTTCC 59.968 50.000 0.00 0.00 0.00 3.13
183 184 2.525105 AACCCCGTATGCAATTTCCT 57.475 45.000 0.00 0.00 0.00 3.36
184 185 2.525105 ACCCCGTATGCAATTTCCTT 57.475 45.000 0.00 0.00 0.00 3.36
185 186 2.815158 ACCCCGTATGCAATTTCCTTT 58.185 42.857 0.00 0.00 0.00 3.11
186 187 2.495669 ACCCCGTATGCAATTTCCTTTG 59.504 45.455 0.00 0.00 0.00 2.77
187 188 2.757868 CCCCGTATGCAATTTCCTTTGA 59.242 45.455 0.00 0.00 0.00 2.69
188 189 3.428862 CCCCGTATGCAATTTCCTTTGAC 60.429 47.826 0.00 0.00 0.00 3.18
189 190 3.443681 CCCGTATGCAATTTCCTTTGACT 59.556 43.478 0.00 0.00 0.00 3.41
190 191 4.638421 CCCGTATGCAATTTCCTTTGACTA 59.362 41.667 0.00 0.00 0.00 2.59
191 192 5.220854 CCCGTATGCAATTTCCTTTGACTAG 60.221 44.000 0.00 0.00 0.00 2.57
192 193 5.266242 CGTATGCAATTTCCTTTGACTAGC 58.734 41.667 0.00 0.00 0.00 3.42
193 194 3.829886 TGCAATTTCCTTTGACTAGCG 57.170 42.857 0.00 0.00 0.00 4.26
194 195 3.407698 TGCAATTTCCTTTGACTAGCGA 58.592 40.909 0.00 0.00 0.00 4.93
195 196 4.009675 TGCAATTTCCTTTGACTAGCGAT 58.990 39.130 0.00 0.00 0.00 4.58
196 197 5.182487 TGCAATTTCCTTTGACTAGCGATA 58.818 37.500 0.00 0.00 0.00 2.92
197 198 5.822519 TGCAATTTCCTTTGACTAGCGATAT 59.177 36.000 0.00 0.00 0.00 1.63
198 199 6.138761 GCAATTTCCTTTGACTAGCGATATG 58.861 40.000 0.00 0.00 0.00 1.78
199 200 6.238484 GCAATTTCCTTTGACTAGCGATATGT 60.238 38.462 0.00 0.00 0.00 2.29
200 201 7.679638 GCAATTTCCTTTGACTAGCGATATGTT 60.680 37.037 0.00 0.00 0.00 2.71
201 202 8.826710 CAATTTCCTTTGACTAGCGATATGTTA 58.173 33.333 0.00 0.00 0.00 2.41
202 203 7.766219 TTTCCTTTGACTAGCGATATGTTAC 57.234 36.000 0.00 0.00 0.00 2.50
203 204 6.710597 TCCTTTGACTAGCGATATGTTACT 57.289 37.500 0.00 0.00 0.00 2.24
204 205 7.108841 TCCTTTGACTAGCGATATGTTACTT 57.891 36.000 0.00 0.00 0.00 2.24
205 206 6.978659 TCCTTTGACTAGCGATATGTTACTTG 59.021 38.462 0.00 0.00 0.00 3.16
206 207 6.292381 CCTTTGACTAGCGATATGTTACTTGC 60.292 42.308 0.00 0.00 0.00 4.01
207 208 4.617959 TGACTAGCGATATGTTACTTGCC 58.382 43.478 0.00 0.00 0.00 4.52
208 209 3.988517 GACTAGCGATATGTTACTTGCCC 59.011 47.826 0.00 0.00 0.00 5.36
209 210 1.865865 AGCGATATGTTACTTGCCCG 58.134 50.000 0.00 0.00 0.00 6.13
210 211 1.411246 AGCGATATGTTACTTGCCCGA 59.589 47.619 0.00 0.00 0.00 5.14
211 212 1.792949 GCGATATGTTACTTGCCCGAG 59.207 52.381 0.00 0.00 0.00 4.63
212 213 2.802057 GCGATATGTTACTTGCCCGAGT 60.802 50.000 0.00 0.00 0.00 4.18
213 214 3.551454 GCGATATGTTACTTGCCCGAGTA 60.551 47.826 0.00 0.00 0.00 2.59
214 215 4.227538 CGATATGTTACTTGCCCGAGTAG 58.772 47.826 0.00 0.00 33.91 2.57
215 216 4.023450 CGATATGTTACTTGCCCGAGTAGA 60.023 45.833 0.00 0.00 33.91 2.59
216 217 5.506815 CGATATGTTACTTGCCCGAGTAGAA 60.507 44.000 0.00 0.00 33.91 2.10
217 218 4.546829 ATGTTACTTGCCCGAGTAGAAA 57.453 40.909 0.00 0.00 33.91 2.52
218 219 3.921677 TGTTACTTGCCCGAGTAGAAAG 58.078 45.455 0.00 0.00 33.91 2.62
219 220 3.575256 TGTTACTTGCCCGAGTAGAAAGA 59.425 43.478 0.00 0.00 33.91 2.52
220 221 4.222145 TGTTACTTGCCCGAGTAGAAAGAT 59.778 41.667 0.00 0.00 33.91 2.40
221 222 3.528597 ACTTGCCCGAGTAGAAAGATC 57.471 47.619 0.00 0.00 0.00 2.75
222 223 2.168728 ACTTGCCCGAGTAGAAAGATCC 59.831 50.000 0.00 0.00 0.00 3.36
223 224 1.860641 TGCCCGAGTAGAAAGATCCA 58.139 50.000 0.00 0.00 0.00 3.41
224 225 2.398588 TGCCCGAGTAGAAAGATCCAT 58.601 47.619 0.00 0.00 0.00 3.41
225 226 2.365617 TGCCCGAGTAGAAAGATCCATC 59.634 50.000 0.00 0.00 0.00 3.51
226 227 2.365617 GCCCGAGTAGAAAGATCCATCA 59.634 50.000 0.00 0.00 0.00 3.07
227 228 3.007398 GCCCGAGTAGAAAGATCCATCAT 59.993 47.826 0.00 0.00 0.00 2.45
228 229 4.564041 CCCGAGTAGAAAGATCCATCATG 58.436 47.826 0.00 0.00 0.00 3.07
229 230 4.039730 CCCGAGTAGAAAGATCCATCATGT 59.960 45.833 0.00 0.00 0.00 3.21
230 231 5.226396 CCGAGTAGAAAGATCCATCATGTC 58.774 45.833 0.00 0.00 0.00 3.06
231 232 5.221322 CCGAGTAGAAAGATCCATCATGTCA 60.221 44.000 0.00 0.00 0.00 3.58
232 233 6.453943 CGAGTAGAAAGATCCATCATGTCAT 58.546 40.000 0.00 0.00 0.00 3.06
233 234 6.365518 CGAGTAGAAAGATCCATCATGTCATG 59.634 42.308 6.47 6.47 0.00 3.07
234 235 7.134362 AGTAGAAAGATCCATCATGTCATGT 57.866 36.000 12.54 0.00 0.00 3.21
235 236 6.990939 AGTAGAAAGATCCATCATGTCATGTG 59.009 38.462 12.54 9.82 0.00 3.21
236 237 4.579340 AGAAAGATCCATCATGTCATGTGC 59.421 41.667 12.54 0.00 0.00 4.57
237 238 3.570912 AGATCCATCATGTCATGTGCA 57.429 42.857 12.54 0.00 0.00 4.57
238 239 4.100279 AGATCCATCATGTCATGTGCAT 57.900 40.909 12.54 2.67 0.00 3.96
239 240 4.470602 AGATCCATCATGTCATGTGCATT 58.529 39.130 12.54 0.00 0.00 3.56
240 241 4.519350 AGATCCATCATGTCATGTGCATTC 59.481 41.667 12.54 6.30 0.00 2.67
241 242 2.614983 TCCATCATGTCATGTGCATTCG 59.385 45.455 12.54 0.00 0.00 3.34
242 243 2.356695 CCATCATGTCATGTGCATTCGT 59.643 45.455 12.54 0.00 0.00 3.85
243 244 3.359654 CATCATGTCATGTGCATTCGTG 58.640 45.455 12.54 0.00 0.00 4.35
244 245 2.425539 TCATGTCATGTGCATTCGTGT 58.574 42.857 12.54 0.00 0.00 4.49
245 246 3.594134 TCATGTCATGTGCATTCGTGTA 58.406 40.909 12.54 0.00 0.00 2.90
246 247 4.190772 TCATGTCATGTGCATTCGTGTAT 58.809 39.130 12.54 0.00 0.00 2.29
247 248 4.034279 TCATGTCATGTGCATTCGTGTATG 59.966 41.667 12.54 0.60 0.00 2.39
248 249 2.677337 TGTCATGTGCATTCGTGTATGG 59.323 45.455 0.00 0.00 0.00 2.74
249 250 2.935849 GTCATGTGCATTCGTGTATGGA 59.064 45.455 0.00 0.00 0.00 3.41
250 251 2.935849 TCATGTGCATTCGTGTATGGAC 59.064 45.455 10.71 10.71 44.32 4.02
251 252 1.732941 TGTGCATTCGTGTATGGACC 58.267 50.000 13.47 0.00 43.68 4.46
252 253 1.002544 TGTGCATTCGTGTATGGACCA 59.997 47.619 0.00 0.00 43.68 4.02
253 254 2.080693 GTGCATTCGTGTATGGACCAA 58.919 47.619 0.00 0.00 39.94 3.67
254 255 2.095853 GTGCATTCGTGTATGGACCAAG 59.904 50.000 0.00 0.00 39.94 3.61
255 256 2.290008 TGCATTCGTGTATGGACCAAGT 60.290 45.455 0.00 0.00 0.00 3.16
256 257 2.095853 GCATTCGTGTATGGACCAAGTG 59.904 50.000 0.00 0.00 0.00 3.16
257 258 1.803334 TTCGTGTATGGACCAAGTGC 58.197 50.000 0.00 0.00 0.00 4.40
258 259 0.682292 TCGTGTATGGACCAAGTGCA 59.318 50.000 0.00 0.00 38.41 4.57
259 260 0.796312 CGTGTATGGACCAAGTGCAC 59.204 55.000 9.40 9.40 36.59 4.57
260 261 0.796312 GTGTATGGACCAAGTGCACG 59.204 55.000 12.01 0.00 36.59 5.34
261 262 0.321210 TGTATGGACCAAGTGCACGG 60.321 55.000 12.01 10.34 36.59 4.94
262 263 1.376683 TATGGACCAAGTGCACGGC 60.377 57.895 12.01 0.00 36.59 5.68
263 264 2.813226 TATGGACCAAGTGCACGGCC 62.813 60.000 12.01 9.85 36.59 6.13
283 284 4.334118 TGATGCCCTGCTGCGTGT 62.334 61.111 0.00 0.00 0.00 4.49
284 285 3.807538 GATGCCCTGCTGCGTGTG 61.808 66.667 0.00 0.00 0.00 3.82
322 323 0.248054 CGGTATTGCCAATGTGCGTC 60.248 55.000 0.00 0.00 36.97 5.19
331 332 0.865111 CAATGTGCGTCGGTGAAGAA 59.135 50.000 0.00 0.00 0.00 2.52
344 345 1.317431 TGAAGAACCGCGGCTAGCTA 61.317 55.000 28.58 5.16 45.59 3.32
356 357 0.755686 GCTAGCTAGCTGGTGATGGT 59.244 55.000 33.71 0.00 45.62 3.55
357 358 1.139853 GCTAGCTAGCTGGTGATGGTT 59.860 52.381 33.71 0.00 45.62 3.67
367 368 2.171635 GTGATGGTTCACGGCTTCC 58.828 57.895 0.00 0.00 42.66 3.46
368 369 0.605319 GTGATGGTTCACGGCTTCCA 60.605 55.000 0.00 0.00 42.66 3.53
372 373 0.605319 TGGTTCACGGCTTCCATCAC 60.605 55.000 0.00 0.00 0.00 3.06
373 374 1.305930 GGTTCACGGCTTCCATCACC 61.306 60.000 0.00 0.00 0.00 4.02
374 375 0.321653 GTTCACGGCTTCCATCACCT 60.322 55.000 0.00 0.00 0.00 4.00
375 376 0.036388 TTCACGGCTTCCATCACCTC 60.036 55.000 0.00 0.00 0.00 3.85
376 377 1.191489 TCACGGCTTCCATCACCTCA 61.191 55.000 0.00 0.00 0.00 3.86
378 379 1.817099 CGGCTTCCATCACCTCAGC 60.817 63.158 0.00 0.00 0.00 4.26
379 380 1.606531 GGCTTCCATCACCTCAGCT 59.393 57.895 0.00 0.00 0.00 4.24
380 381 0.463474 GGCTTCCATCACCTCAGCTC 60.463 60.000 0.00 0.00 0.00 4.09
381 382 0.463474 GCTTCCATCACCTCAGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
382 383 0.179089 CTTCCATCACCTCAGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
383 384 1.617018 TTCCATCACCTCAGCTCCGG 61.617 60.000 0.00 0.00 0.00 5.14
384 385 2.362369 CCATCACCTCAGCTCCGGT 61.362 63.158 0.00 0.00 0.00 5.28
388 389 4.136978 ACCTCAGCTCCGGTGATT 57.863 55.556 7.92 0.00 39.36 2.57
389 390 1.901085 ACCTCAGCTCCGGTGATTC 59.099 57.895 7.92 0.00 39.36 2.52
390 391 0.616111 ACCTCAGCTCCGGTGATTCT 60.616 55.000 7.92 0.00 39.36 2.40
391 392 0.539051 CCTCAGCTCCGGTGATTCTT 59.461 55.000 7.92 0.00 39.36 2.52
392 393 1.472376 CCTCAGCTCCGGTGATTCTTC 60.472 57.143 7.92 0.00 39.36 2.87
393 394 1.205655 CTCAGCTCCGGTGATTCTTCA 59.794 52.381 7.92 0.00 39.36 3.02
394 395 1.205655 TCAGCTCCGGTGATTCTTCAG 59.794 52.381 7.92 0.00 35.04 3.02
395 396 0.539051 AGCTCCGGTGATTCTTCAGG 59.461 55.000 7.92 0.00 30.85 3.86
396 397 1.092345 GCTCCGGTGATTCTTCAGGC 61.092 60.000 7.92 0.00 30.85 4.85
397 398 0.250234 CTCCGGTGATTCTTCAGGCA 59.750 55.000 0.00 0.00 30.85 4.75
398 399 0.250234 TCCGGTGATTCTTCAGGCAG 59.750 55.000 0.00 0.00 30.85 4.85
399 400 0.745845 CCGGTGATTCTTCAGGCAGG 60.746 60.000 0.00 0.00 30.85 4.85
400 401 1.372087 CGGTGATTCTTCAGGCAGGC 61.372 60.000 0.00 0.00 30.85 4.85
401 402 1.034292 GGTGATTCTTCAGGCAGGCC 61.034 60.000 0.97 0.97 30.85 5.19
403 404 0.254178 TGATTCTTCAGGCAGGCCTC 59.746 55.000 10.50 0.00 46.28 4.70
404 405 0.465278 GATTCTTCAGGCAGGCCTCC 60.465 60.000 10.50 7.83 46.28 4.30
405 406 1.931007 ATTCTTCAGGCAGGCCTCCC 61.931 60.000 3.72 3.72 46.28 4.30
406 407 3.013932 CTTCAGGCAGGCCTCCCT 61.014 66.667 10.44 10.44 46.28 4.20
407 408 3.011517 TTCAGGCAGGCCTCCCTC 61.012 66.667 14.22 0.00 46.28 4.30
408 409 3.569361 TTCAGGCAGGCCTCCCTCT 62.569 63.158 14.22 0.00 46.28 3.69
409 410 3.013932 CAGGCAGGCCTCCCTCTT 61.014 66.667 14.22 0.00 46.28 2.85
410 411 2.690510 AGGCAGGCCTCCCTCTTC 60.691 66.667 10.44 0.00 44.43 2.87
411 412 3.011517 GGCAGGCCTCCCTCTTCA 61.012 66.667 5.06 0.00 40.33 3.02
412 413 2.606587 GGCAGGCCTCCCTCTTCAA 61.607 63.158 5.06 0.00 40.33 2.69
413 414 1.377856 GCAGGCCTCCCTCTTCAAC 60.378 63.158 0.00 0.00 40.33 3.18
414 415 2.069776 CAGGCCTCCCTCTTCAACA 58.930 57.895 0.00 0.00 40.33 3.33
415 416 0.035630 CAGGCCTCCCTCTTCAACAG 60.036 60.000 0.00 0.00 40.33 3.16
416 417 1.377856 GGCCTCCCTCTTCAACAGC 60.378 63.158 0.00 0.00 0.00 4.40
419 420 1.210478 GCCTCCCTCTTCAACAGCATA 59.790 52.381 0.00 0.00 0.00 3.14
494 499 4.331968 TGGAAAATCAGTTTATGAGGCGT 58.668 39.130 0.00 0.00 42.53 5.68
497 502 5.007724 GGAAAATCAGTTTATGAGGCGTAGG 59.992 44.000 0.00 0.00 42.53 3.18
501 506 3.119245 TCAGTTTATGAGGCGTAGGACAC 60.119 47.826 0.00 0.00 32.77 3.67
506 511 1.445582 GAGGCGTAGGACACAACGG 60.446 63.158 0.00 0.00 39.46 4.44
516 521 2.058829 GACACAACGGCCACACAAGG 62.059 60.000 2.24 0.00 0.00 3.61
517 522 1.821759 CACAACGGCCACACAAGGA 60.822 57.895 2.24 0.00 0.00 3.36
605 610 0.460284 GATACCCTGTCGTGGTGCAG 60.460 60.000 0.00 0.00 36.57 4.41
653 658 0.396811 AGGTTTGGTCCGACTTCAGG 59.603 55.000 0.00 0.00 0.00 3.86
654 659 0.108019 GGTTTGGTCCGACTTCAGGT 59.892 55.000 0.00 0.00 0.00 4.00
656 661 1.070289 GTTTGGTCCGACTTCAGGTCT 59.930 52.381 0.00 0.00 42.44 3.85
657 662 1.420430 TTGGTCCGACTTCAGGTCTT 58.580 50.000 0.00 0.00 42.44 3.01
658 663 0.966920 TGGTCCGACTTCAGGTCTTC 59.033 55.000 0.00 0.00 42.44 2.87
659 664 0.966920 GGTCCGACTTCAGGTCTTCA 59.033 55.000 0.00 0.00 42.44 3.02
660 665 1.067495 GGTCCGACTTCAGGTCTTCAG 60.067 57.143 0.00 0.00 42.44 3.02
661 666 0.603569 TCCGACTTCAGGTCTTCAGC 59.396 55.000 0.00 0.00 42.44 4.26
663 668 0.605589 CGACTTCAGGTCTTCAGCCT 59.394 55.000 0.00 0.00 42.44 4.58
664 669 1.403514 CGACTTCAGGTCTTCAGCCTC 60.404 57.143 0.00 0.00 42.44 4.70
665 670 1.620819 GACTTCAGGTCTTCAGCCTCA 59.379 52.381 0.00 0.00 41.46 3.86
666 671 1.622811 ACTTCAGGTCTTCAGCCTCAG 59.377 52.381 0.00 0.00 33.31 3.35
667 672 0.979665 TTCAGGTCTTCAGCCTCAGG 59.020 55.000 0.00 0.00 33.31 3.86
690 707 0.961753 GAATCATTTCCCCCGGATGC 59.038 55.000 0.73 0.00 0.00 3.91
769 786 4.790962 TCCCGACTCCCGTCCTCG 62.791 72.222 0.00 0.00 36.82 4.63
828 845 4.008933 GTCGCTGACACCTGCCCT 62.009 66.667 4.20 0.00 34.24 5.19
1055 1125 4.119363 GCTCATCCCCAGCAGCCA 62.119 66.667 0.00 0.00 36.82 4.75
1383 1477 1.071471 CACCAAGCTCCTCACCGTT 59.929 57.895 0.00 0.00 0.00 4.44
1414 1508 0.806102 CTGGCATGTAAGGACGGACG 60.806 60.000 0.00 0.00 0.00 4.79
1415 1509 1.520787 GGCATGTAAGGACGGACGG 60.521 63.158 0.00 0.00 0.00 4.79
1416 1510 1.514087 GCATGTAAGGACGGACGGA 59.486 57.895 0.00 0.00 0.00 4.69
1417 1511 0.804933 GCATGTAAGGACGGACGGAC 60.805 60.000 0.00 0.00 0.00 4.79
1418 1512 0.524816 CATGTAAGGACGGACGGACG 60.525 60.000 0.00 0.00 40.31 4.79
1419 1513 1.660560 ATGTAAGGACGGACGGACGG 61.661 60.000 6.00 0.00 38.39 4.79
1420 1514 2.040544 GTAAGGACGGACGGACGGA 61.041 63.158 6.00 0.00 38.39 4.69
1421 1515 2.040544 TAAGGACGGACGGACGGAC 61.041 63.158 6.00 0.00 38.39 4.79
1447 1541 5.125417 TCCTCGATTGATTCCAACCAAAATC 59.875 40.000 0.00 0.00 34.72 2.17
1461 1560 2.680339 CCAAAATCGCCTCTTCTCTTCC 59.320 50.000 0.00 0.00 0.00 3.46
1471 1665 4.794655 GCCTCTTCTCTTCCACTAATAGCG 60.795 50.000 0.00 0.00 0.00 4.26
1478 1672 2.820059 TCCACTAATAGCGAGCCATG 57.180 50.000 0.00 0.00 0.00 3.66
1492 1686 3.178267 GAGCCATGATCTCGATCGATTC 58.822 50.000 19.78 18.07 40.63 2.52
1528 1740 6.331369 TGTTTCTCTTGATTGGATTTGGTC 57.669 37.500 0.00 0.00 0.00 4.02
1658 1874 1.436336 CGGCGTCGTCTATTCCCTT 59.564 57.895 0.00 0.00 0.00 3.95
1703 1924 1.224592 CCAATCCAGTTCCCCCTCG 59.775 63.158 0.00 0.00 0.00 4.63
1704 1925 1.452108 CAATCCAGTTCCCCCTCGC 60.452 63.158 0.00 0.00 0.00 5.03
1705 1926 1.616628 AATCCAGTTCCCCCTCGCT 60.617 57.895 0.00 0.00 0.00 4.93
1706 1927 1.915078 AATCCAGTTCCCCCTCGCTG 61.915 60.000 0.00 0.00 0.00 5.18
1707 1928 2.822643 ATCCAGTTCCCCCTCGCTGA 62.823 60.000 0.00 0.00 0.00 4.26
1708 1929 2.266055 CAGTTCCCCCTCGCTGAC 59.734 66.667 0.00 0.00 0.00 3.51
1709 1930 2.203788 AGTTCCCCCTCGCTGACA 60.204 61.111 0.00 0.00 0.00 3.58
1796 2068 4.060205 GCTTACAGTGTTACGAAGGGAAA 58.940 43.478 0.00 0.00 0.00 3.13
1906 2182 0.392461 TTCTGCGAGGTACCCATTGC 60.392 55.000 8.74 7.38 0.00 3.56
1934 2218 1.473278 AGCCTGACTCGTACTACAAGC 59.527 52.381 0.00 0.00 0.00 4.01
1978 2268 3.693085 ACTGACATGAATGCATCCACTTC 59.307 43.478 0.00 0.00 30.68 3.01
1991 2281 1.003580 TCCACTTCCTTGCATCAGTCC 59.996 52.381 0.00 0.00 0.00 3.85
2000 2290 1.067295 TGCATCAGTCCTTGTTCCCT 58.933 50.000 0.00 0.00 0.00 4.20
2114 2404 0.617535 TCCTTCGCTGGGAATCTCCA 60.618 55.000 7.65 0.00 38.64 3.86
2183 2473 9.243637 CTTACTGTAAGCATCACTAATCTTCTC 57.756 37.037 14.08 0.00 37.60 2.87
2229 2530 5.705905 GGTTGTGCCAGACTAAGTATCTTTT 59.294 40.000 0.00 0.00 37.17 2.27
2268 2569 6.595326 TGAATGCTGACGATCTTAGTTTCATT 59.405 34.615 0.00 0.00 0.00 2.57
2355 2672 4.919168 TGCATTTTGCTTCTTCATTCTTCG 59.081 37.500 0.75 0.00 45.31 3.79
2365 2682 6.462949 GCTTCTTCATTCTTCGTTTATTGACG 59.537 38.462 0.00 0.00 44.06 4.35
2413 2734 2.365408 ACACTAGAAACTACAGGCGC 57.635 50.000 0.00 0.00 0.00 6.53
2445 2766 9.737844 AACGGGTGTAAATTAACTAAATAAGGA 57.262 29.630 0.00 0.00 0.00 3.36
2446 2767 9.737844 ACGGGTGTAAATTAACTAAATAAGGAA 57.262 29.630 0.00 0.00 0.00 3.36
2484 2816 7.819644 TCTGATACACCATTGTGAAAGAATTG 58.180 34.615 3.55 0.00 45.76 2.32
2491 2823 2.603075 TGTGAAAGAATTGGGGGAGG 57.397 50.000 0.00 0.00 0.00 4.30
2492 2824 1.186200 GTGAAAGAATTGGGGGAGGC 58.814 55.000 0.00 0.00 0.00 4.70
2545 3625 9.466497 AAATGTGATTGATAGGATTAGTTGTGT 57.534 29.630 0.00 0.00 0.00 3.72
2581 3667 4.712122 ATTGTACATTACCTTTTGCCCG 57.288 40.909 0.00 0.00 0.00 6.13
2616 3702 8.879342 TCTTGCTACTCATTATTAGAAAGCTC 57.121 34.615 0.00 0.00 32.71 4.09
2662 3749 1.273986 TGCAGGCTGGATGGAAGCTA 61.274 55.000 17.64 0.00 40.64 3.32
2686 3773 3.857093 GGCCATTTGCACACTTAATTACG 59.143 43.478 0.00 0.00 43.89 3.18
2767 3854 3.596214 GGTCACCATCTTGTCAACGTAT 58.404 45.455 0.00 0.00 0.00 3.06
2820 3910 6.108687 TCACAGAATTACTCATGCTACCAAG 58.891 40.000 0.00 0.00 0.00 3.61
2834 3924 3.501445 GCTACCAAGCCTCATCATTCATC 59.499 47.826 0.00 0.00 43.40 2.92
2908 3998 7.804147 AGAAATCTGAAGCAAGGATCTTAGAT 58.196 34.615 0.00 0.00 0.00 1.98
2991 4087 5.649831 AGAAATAAGTTCAGCCTTGTCATCC 59.350 40.000 0.00 0.00 38.86 3.51
3043 4142 6.414732 TCTTTCTTCTTTTCAGGACAACTCA 58.585 36.000 0.00 0.00 0.00 3.41
3127 4226 4.093850 GCTTCGTTACGTTGGGATTGTATT 59.906 41.667 4.24 0.00 0.00 1.89
3158 4257 3.703001 ATAGTTAGTTGCCAGTGCTGT 57.297 42.857 0.00 0.00 38.71 4.40
3234 4336 8.439286 CAAAACCGAAAAAGAAATTGTCTCAAA 58.561 29.630 0.00 0.00 34.56 2.69
3278 4523 3.880047 ATGAGTTGTGCATTTGATGGG 57.120 42.857 0.00 0.00 0.00 4.00
3298 4543 4.210331 GGGCATATGTCTGAACAAAGGAT 58.790 43.478 7.36 0.00 39.30 3.24
3299 4544 4.646492 GGGCATATGTCTGAACAAAGGATT 59.354 41.667 7.36 0.00 39.30 3.01
3300 4545 5.221126 GGGCATATGTCTGAACAAAGGATTC 60.221 44.000 7.36 0.00 39.30 2.52
3301 4546 5.357878 GGCATATGTCTGAACAAAGGATTCA 59.642 40.000 4.29 0.00 39.30 2.57
3305 4550 4.206375 TGTCTGAACAAAGGATTCAAGCA 58.794 39.130 0.00 0.00 35.70 3.91
3359 4604 9.743057 CACAACTCTTAACCAACATTTTCATAA 57.257 29.630 0.00 0.00 0.00 1.90
3401 4648 6.094742 TCTGCACAAGTAGAGAAGTAGAGATG 59.905 42.308 0.00 0.00 32.42 2.90
3432 4679 2.031258 TGGCATGTATACCACCGTTG 57.969 50.000 0.00 0.00 0.00 4.10
3453 4700 6.409234 CGTTGTGGGATTATATATATGCCCCT 60.409 42.308 19.97 0.00 34.64 4.79
3454 4701 6.514012 TGTGGGATTATATATATGCCCCTG 57.486 41.667 19.97 0.00 34.64 4.45
3471 4718 2.250646 TGCTTGACAGATGTGCAGC 58.749 52.632 0.00 6.17 32.83 5.25
3476 4723 2.484742 TGACAGATGTGCAGCTCAAT 57.515 45.000 0.32 0.00 0.00 2.57
3480 4727 5.861727 TGACAGATGTGCAGCTCAATATAT 58.138 37.500 0.32 0.00 0.00 0.86
3481 4728 5.699458 TGACAGATGTGCAGCTCAATATATG 59.301 40.000 0.32 0.00 0.00 1.78
3482 4729 4.454847 ACAGATGTGCAGCTCAATATATGC 59.545 41.667 0.32 0.00 39.14 3.14
3483 4730 4.008330 AGATGTGCAGCTCAATATATGCC 58.992 43.478 0.32 0.00 37.89 4.40
3484 4731 2.145536 TGTGCAGCTCAATATATGCCG 58.854 47.619 0.00 0.00 37.89 5.69
3486 4733 0.449388 GCAGCTCAATATATGCCGCC 59.551 55.000 0.00 0.00 32.49 6.13
3493 4742 3.950794 ATATATGCCGCCCACGCCG 62.951 63.158 0.00 0.00 38.22 6.46
3511 4760 0.178767 CGGGACCATGAGAGCATCAA 59.821 55.000 0.00 0.00 42.53 2.57
3528 4777 5.867716 AGCATCAAATTTCATGAAGCTGAAC 59.132 36.000 6.20 11.15 46.55 3.18
3582 4831 0.959372 CAAGGAGTGGAGGCAAGCTG 60.959 60.000 0.00 0.00 0.00 4.24
3601 4850 0.671251 GGTGCTGGAGGAGTAGATCG 59.329 60.000 0.00 0.00 0.00 3.69
3612 4861 2.930682 GGAGTAGATCGTTTTGTGAGGC 59.069 50.000 0.00 0.00 0.00 4.70
3628 4877 4.520111 TGTGAGGCGTTAGTTTAGTGAGTA 59.480 41.667 0.00 0.00 0.00 2.59
3649 4898 4.904590 TTGGTGGGTGTTGGCGGG 62.905 66.667 0.00 0.00 0.00 6.13
3659 4908 2.034843 TTGGCGGGCTTGCACATA 59.965 55.556 2.38 0.00 36.28 2.29
3685 4941 6.701145 TGCAAACACCTCTTGTAAATGTTA 57.299 33.333 0.00 0.00 37.51 2.41
3693 4949 8.837389 ACACCTCTTGTAAATGTTAACTTCTTC 58.163 33.333 7.22 0.00 36.32 2.87
3701 4957 9.847224 TGTAAATGTTAACTTCTTCCTTCTTCT 57.153 29.630 7.22 0.00 0.00 2.85
3729 4985 8.980481 AAAGTTCTATGGTTTCTCTTGAGAAA 57.020 30.769 18.48 18.48 35.67 2.52
3766 5189 4.807304 CCATGCATGAAAACTTTGATAGGC 59.193 41.667 28.31 0.00 0.00 3.93
3800 5223 5.453339 GGCTAGTTATGGCTGACTGATACAA 60.453 44.000 0.00 0.00 32.55 2.41
3812 5235 6.128526 GCTGACTGATACAACTTTACAACTCC 60.129 42.308 0.00 0.00 0.00 3.85
3816 5239 6.270231 ACTGATACAACTTTACAACTCCTCCT 59.730 38.462 0.00 0.00 0.00 3.69
3819 5242 3.714798 ACAACTTTACAACTCCTCCTGGA 59.285 43.478 0.00 0.00 40.69 3.86
3844 5267 2.028925 CAACGGGCTTGGGCAAAC 59.971 61.111 0.00 0.00 40.87 2.93
3845 5268 2.123468 AACGGGCTTGGGCAAACT 60.123 55.556 0.00 0.00 40.87 2.66
3846 5269 2.200337 AACGGGCTTGGGCAAACTC 61.200 57.895 0.00 0.00 40.87 3.01
3852 5275 1.971695 CTTGGGCAAACTCGACCCC 60.972 63.158 5.64 0.32 43.54 4.95
3856 5279 2.342648 GCAAACTCGACCCCTCGT 59.657 61.111 0.00 0.00 41.02 4.18
3858 5281 0.175073 GCAAACTCGACCCCTCGTAT 59.825 55.000 0.00 0.00 41.02 3.06
3867 5290 1.959282 GACCCCTCGTATATGTCCGTT 59.041 52.381 0.00 0.00 0.00 4.44
3869 5292 1.958579 CCCCTCGTATATGTCCGTTGA 59.041 52.381 0.00 0.00 0.00 3.18
3898 5321 0.312416 CACGGATAAGAGGAGCTCGG 59.688 60.000 7.83 0.00 35.36 4.63
3941 5364 7.925622 TGCAATCATCTCCCTCATATCTAAAT 58.074 34.615 0.00 0.00 0.00 1.40
3944 5367 9.820725 CAATCATCTCCCTCATATCTAAATCTC 57.179 37.037 0.00 0.00 0.00 2.75
3951 5374 8.748179 TCCCTCATATCTAAATCTCCAAATCT 57.252 34.615 0.00 0.00 0.00 2.40
3986 5409 8.522003 TCATGCAATGTAGATTAACACAACATT 58.478 29.630 0.00 0.00 46.80 2.71
4026 5449 8.896744 CAGTTCATTTCATACAACCAGACATAT 58.103 33.333 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.648504 ATAAGGTCCGCACGCTTAAC 58.351 50.000 0.00 0.00 0.00 2.01
8 9 3.181473 ACATATAAGGTCCGCACGCTTAA 60.181 43.478 0.00 0.00 0.00 1.85
9 10 2.363038 ACATATAAGGTCCGCACGCTTA 59.637 45.455 0.00 0.00 0.00 3.09
10 11 1.138266 ACATATAAGGTCCGCACGCTT 59.862 47.619 0.00 0.00 0.00 4.68
11 12 0.750850 ACATATAAGGTCCGCACGCT 59.249 50.000 0.00 0.00 0.00 5.07
12 13 1.525619 GAACATATAAGGTCCGCACGC 59.474 52.381 0.00 0.00 0.00 5.34
13 14 1.784856 CGAACATATAAGGTCCGCACG 59.215 52.381 0.00 0.00 0.00 5.34
14 15 3.050619 CTCGAACATATAAGGTCCGCAC 58.949 50.000 0.00 0.00 0.00 5.34
15 16 2.953648 TCTCGAACATATAAGGTCCGCA 59.046 45.455 0.00 0.00 0.00 5.69
16 17 3.637998 TCTCGAACATATAAGGTCCGC 57.362 47.619 0.00 0.00 0.00 5.54
17 18 5.769367 TGATTCTCGAACATATAAGGTCCG 58.231 41.667 0.00 0.00 0.00 4.79
18 19 7.155328 ACATGATTCTCGAACATATAAGGTCC 58.845 38.462 0.00 0.00 0.00 4.46
19 20 9.347934 CTACATGATTCTCGAACATATAAGGTC 57.652 37.037 0.00 0.00 0.00 3.85
20 21 9.078990 TCTACATGATTCTCGAACATATAAGGT 57.921 33.333 0.00 0.00 0.00 3.50
21 22 9.347934 GTCTACATGATTCTCGAACATATAAGG 57.652 37.037 0.00 0.00 0.00 2.69
22 23 9.899226 TGTCTACATGATTCTCGAACATATAAG 57.101 33.333 0.00 0.00 0.00 1.73
38 39 9.672670 AGAATTGCTTCGGTCATGTCTACATGA 62.673 40.741 19.31 19.31 45.87 3.07
39 40 7.616815 AGAATTGCTTCGGTCATGTCTACATG 61.617 42.308 15.47 15.47 43.80 3.21
40 41 3.610040 TTGCTTCGGTCATGTCTACAT 57.390 42.857 0.00 0.00 36.96 2.29
41 42 3.610040 ATTGCTTCGGTCATGTCTACA 57.390 42.857 0.00 0.00 0.00 2.74
42 43 4.184629 AGAATTGCTTCGGTCATGTCTAC 58.815 43.478 0.00 0.00 36.45 2.59
43 44 4.160439 AGAGAATTGCTTCGGTCATGTCTA 59.840 41.667 0.00 0.00 36.45 2.59
44 45 3.055530 AGAGAATTGCTTCGGTCATGTCT 60.056 43.478 0.00 0.00 36.45 3.41
45 46 3.063180 CAGAGAATTGCTTCGGTCATGTC 59.937 47.826 0.00 0.00 36.45 3.06
46 47 3.005554 CAGAGAATTGCTTCGGTCATGT 58.994 45.455 0.00 0.00 36.45 3.21
47 48 2.353889 CCAGAGAATTGCTTCGGTCATG 59.646 50.000 0.00 0.00 36.45 3.07
48 49 2.026822 ACCAGAGAATTGCTTCGGTCAT 60.027 45.455 0.00 0.00 36.45 3.06
49 50 1.347707 ACCAGAGAATTGCTTCGGTCA 59.652 47.619 0.00 0.00 36.45 4.02
50 51 2.003301 GACCAGAGAATTGCTTCGGTC 58.997 52.381 0.00 0.00 39.53 4.79
51 52 1.347707 TGACCAGAGAATTGCTTCGGT 59.652 47.619 0.00 0.00 36.45 4.69
52 53 2.099141 TGACCAGAGAATTGCTTCGG 57.901 50.000 0.00 0.00 36.45 4.30
53 54 5.801350 TTATTGACCAGAGAATTGCTTCG 57.199 39.130 0.00 0.00 36.45 3.79
75 76 2.024414 GCATCCAGGTCCGCTATTTTT 58.976 47.619 0.00 0.00 0.00 1.94
76 77 1.680338 GCATCCAGGTCCGCTATTTT 58.320 50.000 0.00 0.00 0.00 1.82
77 78 0.179018 GGCATCCAGGTCCGCTATTT 60.179 55.000 0.00 0.00 0.00 1.40
78 79 1.451936 GGCATCCAGGTCCGCTATT 59.548 57.895 0.00 0.00 0.00 1.73
79 80 2.520536 GGGCATCCAGGTCCGCTAT 61.521 63.158 0.00 0.00 0.00 2.97
80 81 3.161450 GGGCATCCAGGTCCGCTA 61.161 66.667 0.00 0.00 0.00 4.26
104 105 5.817816 AGATCTTCGTCAAATATGTGGGAAC 59.182 40.000 0.00 0.00 0.00 3.62
105 106 5.989477 AGATCTTCGTCAAATATGTGGGAA 58.011 37.500 0.00 0.00 0.00 3.97
106 107 5.614324 AGATCTTCGTCAAATATGTGGGA 57.386 39.130 0.00 0.00 0.00 4.37
107 108 6.683974 AAAGATCTTCGTCAAATATGTGGG 57.316 37.500 8.78 0.00 0.00 4.61
108 109 9.869844 GATAAAAGATCTTCGTCAAATATGTGG 57.130 33.333 8.78 0.00 0.00 4.17
114 115 9.219603 TCAACTGATAAAAGATCTTCGTCAAAT 57.780 29.630 8.78 2.72 0.00 2.32
115 116 8.601845 TCAACTGATAAAAGATCTTCGTCAAA 57.398 30.769 8.78 0.00 0.00 2.69
116 117 8.495949 GTTCAACTGATAAAAGATCTTCGTCAA 58.504 33.333 8.78 0.00 0.00 3.18
117 118 7.117812 GGTTCAACTGATAAAAGATCTTCGTCA 59.882 37.037 8.78 11.83 0.00 4.35
118 119 7.117812 TGGTTCAACTGATAAAAGATCTTCGTC 59.882 37.037 8.78 7.92 0.00 4.20
119 120 6.934645 TGGTTCAACTGATAAAAGATCTTCGT 59.065 34.615 8.78 2.61 0.00 3.85
120 121 7.237173 GTGGTTCAACTGATAAAAGATCTTCG 58.763 38.462 8.78 0.00 0.00 3.79
121 122 7.117812 TCGTGGTTCAACTGATAAAAGATCTTC 59.882 37.037 8.78 0.00 0.00 2.87
122 123 6.934645 TCGTGGTTCAACTGATAAAAGATCTT 59.065 34.615 0.88 0.88 0.00 2.40
123 124 6.464222 TCGTGGTTCAACTGATAAAAGATCT 58.536 36.000 0.00 0.00 0.00 2.75
124 125 6.721571 TCGTGGTTCAACTGATAAAAGATC 57.278 37.500 0.00 0.00 0.00 2.75
125 126 6.655003 ACATCGTGGTTCAACTGATAAAAGAT 59.345 34.615 0.00 0.00 0.00 2.40
126 127 5.995282 ACATCGTGGTTCAACTGATAAAAGA 59.005 36.000 0.00 0.00 0.00 2.52
127 128 6.241207 ACATCGTGGTTCAACTGATAAAAG 57.759 37.500 0.00 0.00 0.00 2.27
128 129 5.107259 CGACATCGTGGTTCAACTGATAAAA 60.107 40.000 0.00 0.00 34.11 1.52
129 130 4.387559 CGACATCGTGGTTCAACTGATAAA 59.612 41.667 0.00 0.00 34.11 1.40
130 131 3.924073 CGACATCGTGGTTCAACTGATAA 59.076 43.478 0.00 0.00 34.11 1.75
131 132 3.507786 CGACATCGTGGTTCAACTGATA 58.492 45.455 0.00 0.00 34.11 2.15
132 133 2.337583 CGACATCGTGGTTCAACTGAT 58.662 47.619 0.00 0.00 34.11 2.90
133 134 1.778334 CGACATCGTGGTTCAACTGA 58.222 50.000 0.00 0.00 34.11 3.41
134 135 0.163788 GCGACATCGTGGTTCAACTG 59.836 55.000 2.85 0.00 42.22 3.16
135 136 0.033504 AGCGACATCGTGGTTCAACT 59.966 50.000 2.85 0.00 42.22 3.16
136 137 0.163788 CAGCGACATCGTGGTTCAAC 59.836 55.000 2.85 0.00 42.22 3.18
137 138 0.032815 TCAGCGACATCGTGGTTCAA 59.967 50.000 2.85 0.00 42.22 2.69
138 139 0.246360 ATCAGCGACATCGTGGTTCA 59.754 50.000 2.85 0.00 42.22 3.18
139 140 1.324736 GAATCAGCGACATCGTGGTTC 59.675 52.381 11.39 11.39 42.22 3.62
140 141 1.359848 GAATCAGCGACATCGTGGTT 58.640 50.000 2.85 3.06 42.22 3.67
141 142 0.802222 CGAATCAGCGACATCGTGGT 60.802 55.000 2.85 0.00 42.22 4.16
142 143 1.920051 CGAATCAGCGACATCGTGG 59.080 57.895 2.85 0.00 42.22 4.94
143 144 1.270968 GCGAATCAGCGACATCGTG 59.729 57.895 2.85 0.93 42.22 4.35
144 145 3.693245 GCGAATCAGCGACATCGT 58.307 55.556 2.85 0.00 42.22 3.73
152 153 3.406559 GGGGTTACGCGAATCAGC 58.593 61.111 15.93 2.41 0.00 4.26
160 161 1.018910 AATTGCATACGGGGTTACGC 58.981 50.000 0.00 0.00 37.37 4.42
161 162 2.032426 GGAAATTGCATACGGGGTTACG 59.968 50.000 0.00 0.00 40.31 3.18
162 163 3.284617 AGGAAATTGCATACGGGGTTAC 58.715 45.455 0.00 0.00 0.00 2.50
163 164 3.655615 AGGAAATTGCATACGGGGTTA 57.344 42.857 0.00 0.00 0.00 2.85
164 165 2.525105 AGGAAATTGCATACGGGGTT 57.475 45.000 0.00 0.00 0.00 4.11
165 166 2.495669 CAAAGGAAATTGCATACGGGGT 59.504 45.455 0.00 0.00 0.00 4.95
166 167 2.757868 TCAAAGGAAATTGCATACGGGG 59.242 45.455 0.00 0.00 0.00 5.73
167 168 3.443681 AGTCAAAGGAAATTGCATACGGG 59.556 43.478 0.00 0.00 0.00 5.28
168 169 4.701956 AGTCAAAGGAAATTGCATACGG 57.298 40.909 0.00 0.00 0.00 4.02
169 170 5.266242 GCTAGTCAAAGGAAATTGCATACG 58.734 41.667 0.00 0.00 0.00 3.06
170 171 5.064707 TCGCTAGTCAAAGGAAATTGCATAC 59.935 40.000 0.00 0.00 0.00 2.39
171 172 5.182487 TCGCTAGTCAAAGGAAATTGCATA 58.818 37.500 0.00 0.00 0.00 3.14
172 173 4.009675 TCGCTAGTCAAAGGAAATTGCAT 58.990 39.130 0.00 0.00 0.00 3.96
173 174 3.407698 TCGCTAGTCAAAGGAAATTGCA 58.592 40.909 0.00 0.00 0.00 4.08
174 175 4.622701 ATCGCTAGTCAAAGGAAATTGC 57.377 40.909 0.00 0.00 0.00 3.56
175 176 7.251704 ACATATCGCTAGTCAAAGGAAATTG 57.748 36.000 0.00 0.00 0.00 2.32
176 177 7.865706 AACATATCGCTAGTCAAAGGAAATT 57.134 32.000 0.00 0.00 0.00 1.82
177 178 8.204836 AGTAACATATCGCTAGTCAAAGGAAAT 58.795 33.333 0.00 0.00 0.00 2.17
178 179 7.553334 AGTAACATATCGCTAGTCAAAGGAAA 58.447 34.615 0.00 0.00 0.00 3.13
179 180 7.108841 AGTAACATATCGCTAGTCAAAGGAA 57.891 36.000 0.00 0.00 0.00 3.36
180 181 6.710597 AGTAACATATCGCTAGTCAAAGGA 57.289 37.500 0.00 0.00 0.00 3.36
181 182 6.292381 GCAAGTAACATATCGCTAGTCAAAGG 60.292 42.308 0.00 0.00 0.00 3.11
182 183 6.292381 GGCAAGTAACATATCGCTAGTCAAAG 60.292 42.308 0.00 0.00 0.00 2.77
183 184 5.522460 GGCAAGTAACATATCGCTAGTCAAA 59.478 40.000 0.00 0.00 0.00 2.69
184 185 5.047847 GGCAAGTAACATATCGCTAGTCAA 58.952 41.667 0.00 0.00 0.00 3.18
185 186 4.500887 GGGCAAGTAACATATCGCTAGTCA 60.501 45.833 0.00 0.00 0.00 3.41
186 187 3.988517 GGGCAAGTAACATATCGCTAGTC 59.011 47.826 0.00 0.00 0.00 2.59
187 188 3.552273 CGGGCAAGTAACATATCGCTAGT 60.552 47.826 0.00 0.00 0.00 2.57
188 189 2.987149 CGGGCAAGTAACATATCGCTAG 59.013 50.000 0.00 0.00 0.00 3.42
189 190 2.624364 TCGGGCAAGTAACATATCGCTA 59.376 45.455 0.00 0.00 0.00 4.26
190 191 1.411246 TCGGGCAAGTAACATATCGCT 59.589 47.619 0.00 0.00 0.00 4.93
191 192 1.792949 CTCGGGCAAGTAACATATCGC 59.207 52.381 0.00 0.00 0.00 4.58
192 193 3.093717 ACTCGGGCAAGTAACATATCG 57.906 47.619 0.00 0.00 0.00 2.92
193 194 5.449107 TCTACTCGGGCAAGTAACATATC 57.551 43.478 1.39 0.00 31.56 1.63
194 195 5.864418 TTCTACTCGGGCAAGTAACATAT 57.136 39.130 1.39 0.00 31.56 1.78
195 196 5.419788 TCTTTCTACTCGGGCAAGTAACATA 59.580 40.000 1.39 0.00 31.56 2.29
196 197 4.222145 TCTTTCTACTCGGGCAAGTAACAT 59.778 41.667 1.39 0.00 31.56 2.71
197 198 3.575256 TCTTTCTACTCGGGCAAGTAACA 59.425 43.478 1.39 0.00 31.56 2.41
198 199 4.184079 TCTTTCTACTCGGGCAAGTAAC 57.816 45.455 1.39 0.00 31.56 2.50
199 200 4.142004 GGATCTTTCTACTCGGGCAAGTAA 60.142 45.833 0.00 0.00 31.56 2.24
200 201 3.383825 GGATCTTTCTACTCGGGCAAGTA 59.616 47.826 0.00 0.00 0.00 2.24
201 202 2.168728 GGATCTTTCTACTCGGGCAAGT 59.831 50.000 0.00 0.00 0.00 3.16
202 203 2.168521 TGGATCTTTCTACTCGGGCAAG 59.831 50.000 0.00 0.00 0.00 4.01
203 204 2.184533 TGGATCTTTCTACTCGGGCAA 58.815 47.619 0.00 0.00 0.00 4.52
204 205 1.860641 TGGATCTTTCTACTCGGGCA 58.139 50.000 0.00 0.00 0.00 5.36
205 206 2.365617 TGATGGATCTTTCTACTCGGGC 59.634 50.000 0.00 0.00 0.00 6.13
206 207 4.039730 ACATGATGGATCTTTCTACTCGGG 59.960 45.833 0.00 0.00 0.00 5.14
207 208 5.207110 ACATGATGGATCTTTCTACTCGG 57.793 43.478 0.00 0.00 0.00 4.63
208 209 5.836347 TGACATGATGGATCTTTCTACTCG 58.164 41.667 0.00 0.00 0.00 4.18
209 210 7.171167 CACATGACATGATGGATCTTTCTACTC 59.829 40.741 22.19 0.00 0.00 2.59
210 211 6.990939 CACATGACATGATGGATCTTTCTACT 59.009 38.462 22.19 0.00 0.00 2.57
211 212 6.293298 GCACATGACATGATGGATCTTTCTAC 60.293 42.308 22.19 0.00 0.00 2.59
212 213 5.761726 GCACATGACATGATGGATCTTTCTA 59.238 40.000 22.19 0.00 0.00 2.10
213 214 4.579340 GCACATGACATGATGGATCTTTCT 59.421 41.667 22.19 0.00 0.00 2.52
214 215 4.337274 TGCACATGACATGATGGATCTTTC 59.663 41.667 22.19 3.43 0.00 2.62
215 216 4.274978 TGCACATGACATGATGGATCTTT 58.725 39.130 22.19 0.00 0.00 2.52
216 217 3.893521 TGCACATGACATGATGGATCTT 58.106 40.909 22.19 0.00 0.00 2.40
217 218 3.570912 TGCACATGACATGATGGATCT 57.429 42.857 22.19 0.00 0.00 2.75
218 219 4.612939 CGAATGCACATGACATGATGGATC 60.613 45.833 22.19 12.29 0.00 3.36
219 220 3.252458 CGAATGCACATGACATGATGGAT 59.748 43.478 22.19 17.60 0.00 3.41
220 221 2.614983 CGAATGCACATGACATGATGGA 59.385 45.455 22.19 16.28 0.00 3.41
221 222 2.356695 ACGAATGCACATGACATGATGG 59.643 45.455 22.19 11.42 0.00 3.51
222 223 3.181504 ACACGAATGCACATGACATGATG 60.182 43.478 22.19 15.85 0.00 3.07
223 224 3.011818 ACACGAATGCACATGACATGAT 58.988 40.909 22.19 2.37 0.00 2.45
224 225 2.425539 ACACGAATGCACATGACATGA 58.574 42.857 22.19 0.00 0.00 3.07
225 226 2.905959 ACACGAATGCACATGACATG 57.094 45.000 14.02 14.02 0.00 3.21
226 227 3.313249 CCATACACGAATGCACATGACAT 59.687 43.478 0.00 0.00 0.00 3.06
227 228 2.677337 CCATACACGAATGCACATGACA 59.323 45.455 0.00 0.00 0.00 3.58
228 229 2.935849 TCCATACACGAATGCACATGAC 59.064 45.455 0.00 0.00 0.00 3.06
229 230 2.935849 GTCCATACACGAATGCACATGA 59.064 45.455 0.00 0.00 0.00 3.07
230 231 2.032054 GGTCCATACACGAATGCACATG 59.968 50.000 0.00 0.00 0.00 3.21
231 232 2.288666 GGTCCATACACGAATGCACAT 58.711 47.619 0.00 0.00 0.00 3.21
232 233 1.002544 TGGTCCATACACGAATGCACA 59.997 47.619 0.00 0.00 0.00 4.57
233 234 1.732941 TGGTCCATACACGAATGCAC 58.267 50.000 0.00 0.00 0.00 4.57
234 235 2.290008 ACTTGGTCCATACACGAATGCA 60.290 45.455 0.00 0.00 0.00 3.96
235 236 2.095853 CACTTGGTCCATACACGAATGC 59.904 50.000 0.00 0.00 0.00 3.56
236 237 2.095853 GCACTTGGTCCATACACGAATG 59.904 50.000 0.00 0.00 0.00 2.67
237 238 2.290008 TGCACTTGGTCCATACACGAAT 60.290 45.455 0.00 0.00 0.00 3.34
238 239 1.070914 TGCACTTGGTCCATACACGAA 59.929 47.619 0.00 0.00 0.00 3.85
239 240 0.682292 TGCACTTGGTCCATACACGA 59.318 50.000 0.00 0.00 0.00 4.35
240 241 0.796312 GTGCACTTGGTCCATACACG 59.204 55.000 10.32 0.00 0.00 4.49
241 242 0.796312 CGTGCACTTGGTCCATACAC 59.204 55.000 16.19 0.00 0.00 2.90
242 243 0.321210 CCGTGCACTTGGTCCATACA 60.321 55.000 16.19 0.00 0.00 2.29
243 244 1.644786 GCCGTGCACTTGGTCCATAC 61.645 60.000 16.19 0.00 0.00 2.39
244 245 1.376683 GCCGTGCACTTGGTCCATA 60.377 57.895 16.19 0.00 0.00 2.74
245 246 2.672996 GCCGTGCACTTGGTCCAT 60.673 61.111 16.19 0.00 0.00 3.41
246 247 4.947147 GGCCGTGCACTTGGTCCA 62.947 66.667 16.19 0.00 0.00 4.02
252 253 4.329545 ATCACCGGCCGTGCACTT 62.330 61.111 26.12 0.00 42.69 3.16
265 266 3.807538 CACGCAGCAGGGCATCAC 61.808 66.667 0.00 0.00 0.00 3.06
266 267 4.334118 ACACGCAGCAGGGCATCA 62.334 61.111 0.00 0.00 0.00 3.07
267 268 3.807538 CACACGCAGCAGGGCATC 61.808 66.667 0.00 0.00 0.00 3.91
281 282 0.394216 CCCGGATGATTGAAGCCACA 60.394 55.000 0.73 0.00 0.00 4.17
283 284 1.227102 CCCCGGATGATTGAAGCCA 59.773 57.895 0.73 0.00 0.00 4.75
284 285 0.819666 GTCCCCGGATGATTGAAGCC 60.820 60.000 0.73 0.00 0.00 4.35
339 340 2.466846 TGAACCATCACCAGCTAGCTA 58.533 47.619 18.86 1.28 0.00 3.32
351 352 3.175133 ATGGAAGCCGTGAACCATC 57.825 52.632 0.00 0.00 38.55 3.51
352 353 0.327924 TGATGGAAGCCGTGAACCAT 59.672 50.000 0.00 0.00 44.40 3.55
354 355 1.305930 GGTGATGGAAGCCGTGAACC 61.306 60.000 0.00 0.00 0.00 3.62
356 357 0.036388 GAGGTGATGGAAGCCGTGAA 60.036 55.000 0.00 0.00 0.00 3.18
357 358 1.191489 TGAGGTGATGGAAGCCGTGA 61.191 55.000 0.00 0.00 0.00 4.35
360 361 1.817099 GCTGAGGTGATGGAAGCCG 60.817 63.158 0.00 0.00 0.00 5.52
361 362 0.463474 GAGCTGAGGTGATGGAAGCC 60.463 60.000 0.00 0.00 34.35 4.35
362 363 0.463474 GGAGCTGAGGTGATGGAAGC 60.463 60.000 0.00 0.00 0.00 3.86
363 364 0.179089 CGGAGCTGAGGTGATGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
364 365 1.617018 CCGGAGCTGAGGTGATGGAA 61.617 60.000 0.00 0.00 0.00 3.53
365 366 2.060383 CCGGAGCTGAGGTGATGGA 61.060 63.158 0.00 0.00 0.00 3.41
366 367 2.362369 ACCGGAGCTGAGGTGATGG 61.362 63.158 9.46 0.00 39.66 3.51
367 368 3.303189 ACCGGAGCTGAGGTGATG 58.697 61.111 9.46 0.00 39.66 3.07
372 373 0.539051 AAGAATCACCGGAGCTGAGG 59.461 55.000 9.46 0.00 0.00 3.86
373 374 1.205655 TGAAGAATCACCGGAGCTGAG 59.794 52.381 9.46 0.00 0.00 3.35
374 375 1.205655 CTGAAGAATCACCGGAGCTGA 59.794 52.381 9.46 0.75 0.00 4.26
375 376 1.649664 CTGAAGAATCACCGGAGCTG 58.350 55.000 9.46 0.00 0.00 4.24
376 377 0.539051 CCTGAAGAATCACCGGAGCT 59.461 55.000 9.46 0.00 0.00 4.09
378 379 0.250234 TGCCTGAAGAATCACCGGAG 59.750 55.000 9.46 0.00 0.00 4.63
379 380 0.250234 CTGCCTGAAGAATCACCGGA 59.750 55.000 9.46 0.00 0.00 5.14
380 381 0.745845 CCTGCCTGAAGAATCACCGG 60.746 60.000 0.00 0.00 0.00 5.28
381 382 1.372087 GCCTGCCTGAAGAATCACCG 61.372 60.000 0.00 0.00 0.00 4.94
382 383 1.034292 GGCCTGCCTGAAGAATCACC 61.034 60.000 0.00 0.00 0.00 4.02
383 384 0.034670 AGGCCTGCCTGAAGAATCAC 60.035 55.000 10.51 0.00 46.22 3.06
384 385 2.391226 AGGCCTGCCTGAAGAATCA 58.609 52.632 10.51 0.00 46.22 2.57
394 395 2.606587 TTGAAGAGGGAGGCCTGCC 61.607 63.158 34.93 34.93 41.91 4.85
395 396 1.377856 GTTGAAGAGGGAGGCCTGC 60.378 63.158 17.42 17.42 0.00 4.85
396 397 0.035630 CTGTTGAAGAGGGAGGCCTG 60.036 60.000 12.00 0.00 0.00 4.85
397 398 1.846712 GCTGTTGAAGAGGGAGGCCT 61.847 60.000 3.86 3.86 0.00 5.19
398 399 1.377856 GCTGTTGAAGAGGGAGGCC 60.378 63.158 0.00 0.00 0.00 5.19
399 400 0.034670 ATGCTGTTGAAGAGGGAGGC 60.035 55.000 0.00 0.00 0.00 4.70
400 401 2.503356 AGTATGCTGTTGAAGAGGGAGG 59.497 50.000 0.00 0.00 0.00 4.30
401 402 3.902881 AGTATGCTGTTGAAGAGGGAG 57.097 47.619 0.00 0.00 0.00 4.30
402 403 4.777896 AGTAAGTATGCTGTTGAAGAGGGA 59.222 41.667 0.00 0.00 0.00 4.20
403 404 4.872691 CAGTAAGTATGCTGTTGAAGAGGG 59.127 45.833 0.00 0.00 34.87 4.30
413 414 3.925379 TGTGTGGACAGTAAGTATGCTG 58.075 45.455 0.00 0.00 44.04 4.41
414 415 4.617253 TTGTGTGGACAGTAAGTATGCT 57.383 40.909 0.00 0.00 32.26 3.79
415 416 5.682943 TTTTGTGTGGACAGTAAGTATGC 57.317 39.130 0.00 0.00 32.26 3.14
494 499 1.070105 GTGTGGCCGTTGTGTCCTA 59.930 57.895 0.00 0.00 0.00 2.94
497 502 1.355210 CTTGTGTGGCCGTTGTGTC 59.645 57.895 0.00 0.00 0.00 3.67
501 506 1.654220 CTTCCTTGTGTGGCCGTTG 59.346 57.895 0.00 0.00 0.00 4.10
506 511 0.031178 CAACTGCTTCCTTGTGTGGC 59.969 55.000 0.00 0.00 0.00 5.01
516 521 2.564721 GGTGGTGGCCAACTGCTTC 61.565 63.158 24.13 7.11 38.38 3.86
517 522 2.521708 GGTGGTGGCCAACTGCTT 60.522 61.111 24.13 0.00 38.38 3.91
541 546 2.427245 CGGAGATTCCACGCCTCCT 61.427 63.158 0.00 0.00 43.21 3.69
623 628 1.280421 GACCAAACCTCTCTGCCTCAT 59.720 52.381 0.00 0.00 0.00 2.90
661 666 1.312815 GAAATGATTCCGGCCTGAGG 58.687 55.000 0.00 0.00 0.00 3.86
663 668 3.494850 GGAAATGATTCCGGCCTGA 57.505 52.632 0.00 0.00 45.44 3.86
690 707 1.379527 GGCCAAGGGTAATCTCGTTG 58.620 55.000 0.00 0.00 0.00 4.10
721 738 4.687215 TGTGTGCTCGCCTGAGGC 62.687 66.667 14.89 14.89 46.75 4.70
1293 1381 1.787847 CATCTTGTTGCCGTCGTCC 59.212 57.895 0.00 0.00 0.00 4.79
1414 1508 1.035932 TCAATCGAGGAGGTCCGTCC 61.036 60.000 0.00 0.00 42.08 4.79
1415 1509 1.033574 ATCAATCGAGGAGGTCCGTC 58.966 55.000 0.00 0.00 42.08 4.79
1416 1510 1.409427 GAATCAATCGAGGAGGTCCGT 59.591 52.381 0.00 0.00 42.08 4.69
1417 1511 1.269831 GGAATCAATCGAGGAGGTCCG 60.270 57.143 0.00 0.00 42.08 4.79
1418 1512 1.762957 TGGAATCAATCGAGGAGGTCC 59.237 52.381 12.16 12.16 0.00 4.46
1419 1513 3.198872 GTTGGAATCAATCGAGGAGGTC 58.801 50.000 0.00 0.00 35.10 3.85
1420 1514 2.092914 GGTTGGAATCAATCGAGGAGGT 60.093 50.000 0.00 0.00 35.10 3.85
1421 1515 2.092968 TGGTTGGAATCAATCGAGGAGG 60.093 50.000 0.00 0.00 36.81 4.30
1447 1541 3.810310 ATTAGTGGAAGAGAAGAGGCG 57.190 47.619 0.00 0.00 0.00 5.52
1461 1560 4.172505 GAGATCATGGCTCGCTATTAGTG 58.827 47.826 0.00 0.00 0.00 2.74
1471 1665 2.937469 ATCGATCGAGATCATGGCTC 57.063 50.000 23.84 0.00 37.69 4.70
1658 1874 2.364973 TGGGCTATCCAGTCGCCA 60.365 61.111 0.00 0.00 45.53 5.69
1703 1924 0.461693 GGGATCAGTCAGCTGTCAGC 60.462 60.000 17.48 17.48 43.05 4.26
1704 1925 0.177604 GGGGATCAGTCAGCTGTCAG 59.822 60.000 14.67 5.21 43.05 3.51
1705 1926 0.252421 AGGGGATCAGTCAGCTGTCA 60.252 55.000 14.67 0.00 43.05 3.58
1706 1927 0.908198 AAGGGGATCAGTCAGCTGTC 59.092 55.000 14.67 8.44 43.05 3.51
1707 1928 1.280421 GAAAGGGGATCAGTCAGCTGT 59.720 52.381 14.67 0.00 43.05 4.40
1708 1929 1.558756 AGAAAGGGGATCAGTCAGCTG 59.441 52.381 7.63 7.63 43.87 4.24
1709 1930 1.558756 CAGAAAGGGGATCAGTCAGCT 59.441 52.381 0.00 0.00 0.00 4.24
1749 1986 4.336713 GGAGCAACACAAAGAAGAAGAACT 59.663 41.667 0.00 0.00 0.00 3.01
1796 2068 1.337823 CGGTCAAACTCGAAGATGGGT 60.338 52.381 0.00 0.00 33.89 4.51
1934 2218 6.634035 CAGTTTACACATCAACATCACACAAG 59.366 38.462 0.00 0.00 0.00 3.16
1978 2268 1.815003 GGAACAAGGACTGATGCAAGG 59.185 52.381 0.00 0.00 0.00 3.61
1991 2281 3.897505 ACCAATCCTTGAAAGGGAACAAG 59.102 43.478 9.21 0.00 46.47 3.16
2000 2290 1.133199 ACTGCCCACCAATCCTTGAAA 60.133 47.619 0.00 0.00 0.00 2.69
2018 2308 1.893808 CGCAACCTTGACAGGCACT 60.894 57.895 0.00 0.00 45.56 4.40
2060 2350 3.265791 GAAGTAGATGCTGTTCCACAGG 58.734 50.000 6.05 0.00 46.01 4.00
2114 2404 4.229639 TGAGCTCTCTGAATATGGTGGAT 58.770 43.478 16.19 0.00 0.00 3.41
2175 2465 9.798994 GAAGCATAATTCACAATTGAGAAGATT 57.201 29.630 20.48 14.28 31.71 2.40
2181 2471 6.750501 CCACAGAAGCATAATTCACAATTGAG 59.249 38.462 13.59 4.14 31.71 3.02
2183 2473 6.392354 ACCACAGAAGCATAATTCACAATTG 58.608 36.000 3.24 3.24 32.38 2.32
2215 2516 6.590677 GTCCCAGTGTCAAAAGATACTTAGTC 59.409 42.308 0.00 0.00 0.00 2.59
2229 2530 1.543208 GCATTCACAGTCCCAGTGTCA 60.543 52.381 0.00 0.00 38.16 3.58
2249 2550 9.737427 AGTATACAATGAAACTAAGATCGTCAG 57.263 33.333 5.50 0.00 0.00 3.51
2355 2672 3.998522 ACAATGCTACGCGTCAATAAAC 58.001 40.909 18.63 0.00 0.00 2.01
2365 2682 0.375106 GCCTGAAGACAATGCTACGC 59.625 55.000 0.00 0.00 0.00 4.42
2371 2688 4.082125 ACCTAAAAGGCCTGAAGACAATG 58.918 43.478 5.69 0.00 39.63 2.82
2413 2734 6.226988 AGTTAATTTACACCCGTTAACACG 57.773 37.500 6.39 0.00 46.71 4.49
2445 2766 5.118990 GTGTATCAGATGTATGTGCACCTT 58.881 41.667 15.69 4.36 0.00 3.50
2446 2767 4.443457 GGTGTATCAGATGTATGTGCACCT 60.443 45.833 15.69 7.20 40.26 4.00
2447 2768 3.809832 GGTGTATCAGATGTATGTGCACC 59.190 47.826 15.69 0.00 37.33 5.01
2448 2769 4.441792 TGGTGTATCAGATGTATGTGCAC 58.558 43.478 10.75 10.75 0.00 4.57
2484 2816 3.866582 CACTCATCCGCCTCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
2491 2823 3.057596 TGTTTCCATTTTCACTCATCCGC 60.058 43.478 0.00 0.00 0.00 5.54
2492 2824 4.764679 TGTTTCCATTTTCACTCATCCG 57.235 40.909 0.00 0.00 0.00 4.18
2566 3652 8.710835 ATAAATAAAACGGGCAAAAGGTAATG 57.289 30.769 0.00 0.00 0.00 1.90
2662 3749 4.556592 AATTAAGTGTGCAAATGGCCAT 57.443 36.364 14.09 14.09 43.89 4.40
2686 3773 4.395959 TTCGATAGGAACCACACCATAC 57.604 45.455 0.00 0.00 0.00 2.39
2767 3854 0.321346 TGAAAGCACGATCAGAGGCA 59.679 50.000 0.00 0.00 0.00 4.75
2820 3910 6.002704 AGTAATCTTGGATGAATGATGAGGC 58.997 40.000 0.00 0.00 0.00 4.70
2908 3998 3.678806 GCGTATCTGTTGTGGAGGAATCA 60.679 47.826 0.00 0.00 0.00 2.57
3009 4105 8.465201 CCTGAAAAGAAGAAAGATAATTCCAGG 58.535 37.037 0.00 0.00 0.00 4.45
3043 4142 7.629222 GCAAAACCATGAAGTATGTGCTATCTT 60.629 37.037 0.00 0.00 34.19 2.40
3139 4238 2.104111 ACACAGCACTGGCAACTAACTA 59.896 45.455 2.21 0.00 44.61 2.24
3243 4345 6.317140 GCACAACTCATATTTTCATCAGGAGA 59.683 38.462 0.00 0.00 0.00 3.71
3258 4360 2.093869 GCCCATCAAATGCACAACTCAT 60.094 45.455 0.00 0.00 0.00 2.90
3278 4523 6.441093 TGAATCCTTTGTTCAGACATATGC 57.559 37.500 1.58 0.00 35.29 3.14
3298 4543 0.599991 ACACTCGCATCGTGCTTGAA 60.600 50.000 8.07 0.00 42.25 2.69
3299 4544 0.599991 AACACTCGCATCGTGCTTGA 60.600 50.000 8.07 0.00 42.25 3.02
3300 4545 1.067693 TAACACTCGCATCGTGCTTG 58.932 50.000 8.07 5.46 42.25 4.01
3301 4546 2.010145 ATAACACTCGCATCGTGCTT 57.990 45.000 8.07 0.00 42.25 3.91
3305 4550 4.142447 ACAGTTCTATAACACTCGCATCGT 60.142 41.667 0.00 0.00 38.12 3.73
3316 4561 9.694137 AAGAGTTGTGTTCTACAGTTCTATAAC 57.306 33.333 0.00 0.00 41.10 1.89
3401 4648 5.065218 GGTATACATGCCACAATGCTATAGC 59.935 44.000 18.18 18.18 35.55 2.97
3432 4679 5.073691 AGCAGGGGCATATATATAATCCCAC 59.926 44.000 23.49 14.06 44.61 4.61
3439 4686 5.963865 TCTGTCAAGCAGGGGCATATATATA 59.036 40.000 0.00 0.00 45.08 0.86
3453 4700 0.250597 AGCTGCACATCTGTCAAGCA 60.251 50.000 1.02 5.46 0.00 3.91
3454 4701 0.447011 GAGCTGCACATCTGTCAAGC 59.553 55.000 1.02 5.89 0.00 4.01
3471 4718 1.078709 CGTGGGCGGCATATATTGAG 58.921 55.000 12.47 0.00 0.00 3.02
3486 4733 4.838152 CTCATGGTCCCGGCGTGG 62.838 72.222 6.01 7.15 37.55 4.94
3493 4742 2.425143 TTTGATGCTCTCATGGTCCC 57.575 50.000 0.00 0.00 32.72 4.46
3494 4743 4.400251 TGAAATTTGATGCTCTCATGGTCC 59.600 41.667 0.00 0.00 32.72 4.46
3497 4746 6.144078 TCATGAAATTTGATGCTCTCATGG 57.856 37.500 12.25 0.00 40.23 3.66
3511 4760 6.751157 TGTGAATGTTCAGCTTCATGAAATT 58.249 32.000 9.88 4.38 40.72 1.82
3528 4777 6.129009 GCAGTTTAATCTTGTGCTTGTGAATG 60.129 38.462 0.00 0.00 0.00 2.67
3582 4831 0.671251 CGATCTACTCCTCCAGCACC 59.329 60.000 0.00 0.00 0.00 5.01
3601 4850 5.006941 TCACTAAACTAACGCCTCACAAAAC 59.993 40.000 0.00 0.00 0.00 2.43
3612 4861 6.143438 CACCAACACTACTCACTAAACTAACG 59.857 42.308 0.00 0.00 0.00 3.18
3628 4877 1.756561 GCCAACACCCACCAACACT 60.757 57.895 0.00 0.00 0.00 3.55
3659 4908 6.581712 ACATTTACAAGAGGTGTTTGCAAAT 58.418 32.000 16.21 0.00 41.98 2.32
3669 4925 8.218488 AGGAAGAAGTTAACATTTACAAGAGGT 58.782 33.333 8.61 0.00 0.00 3.85
3735 4991 5.121380 AGTTTTCATGCATGGGATACTCT 57.879 39.130 25.97 12.36 0.00 3.24
3738 4994 5.964758 TCAAAGTTTTCATGCATGGGATAC 58.035 37.500 25.97 18.13 0.00 2.24
3739 4995 6.795144 ATCAAAGTTTTCATGCATGGGATA 57.205 33.333 25.97 4.13 0.00 2.59
3740 4996 5.687166 ATCAAAGTTTTCATGCATGGGAT 57.313 34.783 25.97 12.63 0.00 3.85
3742 4998 5.353938 CCTATCAAAGTTTTCATGCATGGG 58.646 41.667 25.97 10.70 0.00 4.00
3744 5000 4.501559 CGCCTATCAAAGTTTTCATGCATG 59.498 41.667 21.07 21.07 0.00 4.06
3746 5002 3.505680 ACGCCTATCAAAGTTTTCATGCA 59.494 39.130 0.00 0.00 0.00 3.96
3747 5003 4.096732 ACGCCTATCAAAGTTTTCATGC 57.903 40.909 0.00 0.00 0.00 4.06
3748 5004 5.354234 AGGTACGCCTATCAAAGTTTTCATG 59.646 40.000 0.00 0.00 44.90 3.07
3749 5005 5.497474 AGGTACGCCTATCAAAGTTTTCAT 58.503 37.500 0.00 0.00 44.90 2.57
3828 5251 2.123468 AGTTTGCCCAAGCCCGTT 60.123 55.556 0.00 0.00 38.69 4.44
3830 5253 3.737172 CGAGTTTGCCCAAGCCCG 61.737 66.667 0.00 0.00 38.69 6.13
3831 5254 2.282180 TCGAGTTTGCCCAAGCCC 60.282 61.111 0.00 0.00 38.69 5.19
3832 5255 2.626780 GGTCGAGTTTGCCCAAGCC 61.627 63.158 0.00 0.00 38.69 4.35
3833 5256 2.626780 GGGTCGAGTTTGCCCAAGC 61.627 63.158 3.22 0.00 41.93 4.01
3844 5267 1.811359 GGACATATACGAGGGGTCGAG 59.189 57.143 1.09 0.00 36.85 4.04
3845 5268 1.879372 CGGACATATACGAGGGGTCGA 60.879 57.143 1.09 0.00 31.82 4.20
3846 5269 0.520404 CGGACATATACGAGGGGTCG 59.480 60.000 0.00 0.00 31.82 4.79
3869 5292 3.637229 CCTCTTATCCGTGGACTATGTGT 59.363 47.826 0.00 0.00 0.00 3.72
3875 5298 1.063567 AGCTCCTCTTATCCGTGGACT 60.064 52.381 0.00 0.00 0.00 3.85
3898 5321 1.683385 GCAGGATGGACAAATAAGGGC 59.317 52.381 0.00 0.00 35.86 5.19
3941 5364 6.126796 TGCATGACCTTGTATAGATTTGGAGA 60.127 38.462 0.00 0.00 0.00 3.71
3944 5367 6.698008 TTGCATGACCTTGTATAGATTTGG 57.302 37.500 0.00 0.00 0.00 3.28
3986 5409 6.039159 TGAAATGAACTGCTATGTGTTTGTCA 59.961 34.615 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.