Multiple sequence alignment - TraesCS1B01G124500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G124500 chr1B 100.000 3725 0 0 1 3725 151072667 151068943 0.000000e+00 6879.0
1 TraesCS1B01G124500 chr1B 100.000 189 0 0 3997 4185 151068671 151068483 2.390000e-92 350.0
2 TraesCS1B01G124500 chr1B 83.966 237 20 8 3490 3717 570280255 570280482 1.180000e-50 211.0
3 TraesCS1B01G124500 chr1D 89.618 3323 184 70 227 3490 100660204 100663424 0.000000e+00 4076.0
4 TraesCS1B01G124500 chr1D 93.158 190 11 2 3997 4185 79442080 79442268 1.150000e-70 278.0
5 TraesCS1B01G124500 chr1A 89.050 3096 173 66 240 3263 104923012 104920011 0.000000e+00 3687.0
6 TraesCS1B01G124500 chr1A 93.684 190 9 2 3997 4185 545923892 545923705 8.860000e-72 281.0
7 TraesCS1B01G124500 chr1A 94.054 185 10 1 4001 4185 425728140 425728323 3.190000e-71 279.0
8 TraesCS1B01G124500 chr1A 87.552 241 20 4 3486 3725 425727856 425728087 1.920000e-68 270.0
9 TraesCS1B01G124500 chr1A 84.232 241 23 7 3490 3723 435856761 435856529 1.960000e-53 220.0
10 TraesCS1B01G124500 chr1A 82.051 117 12 5 572 679 259016074 259016190 1.600000e-14 91.6
11 TraesCS1B01G124500 chr1A 95.455 44 1 1 181 224 348401550 348401592 7.510000e-08 69.4
12 TraesCS1B01G124500 chr2D 84.988 1259 178 10 1961 3213 602451724 602450471 0.000000e+00 1267.0
13 TraesCS1B01G124500 chr2D 78.322 1144 232 13 1962 3100 651648800 651649932 0.000000e+00 725.0
14 TraesCS1B01G124500 chr2D 94.054 185 9 2 4001 4185 348188371 348188553 3.190000e-71 279.0
15 TraesCS1B01G124500 chr2D 93.158 190 11 2 3997 4185 206197925 206197737 1.150000e-70 278.0
16 TraesCS1B01G124500 chr2D 86.857 175 21 2 1703 1876 602451908 602451735 1.190000e-45 195.0
17 TraesCS1B01G124500 chr2D 89.831 59 6 0 1201 1259 602453287 602453229 4.490000e-10 76.8
18 TraesCS1B01G124500 chr2B 84.909 1259 179 11 1961 3213 732568654 732567401 0.000000e+00 1262.0
19 TraesCS1B01G124500 chr2B 77.715 534 91 23 1353 1876 732569180 732568665 6.800000e-78 302.0
20 TraesCS1B01G124500 chr2B 86.066 244 20 5 3489 3725 165502545 165502309 2.500000e-62 250.0
21 TraesCS1B01G124500 chr2B 85.593 236 24 4 3490 3723 34433846 34433619 5.410000e-59 239.0
22 TraesCS1B01G124500 chr2B 78.322 286 24 10 470 717 439363750 439364035 2.610000e-32 150.0
23 TraesCS1B01G124500 chr2A 77.942 1147 237 13 1962 3103 776022994 776021859 0.000000e+00 702.0
24 TraesCS1B01G124500 chr2A 78.445 283 22 11 470 713 702387957 702388239 9.370000e-32 148.0
25 TraesCS1B01G124500 chr2A 88.060 67 8 0 1201 1267 734925504 734925438 3.470000e-11 80.5
26 TraesCS1B01G124500 chrUn 77.787 1148 237 15 1962 3103 23653088 23651953 0.000000e+00 691.0
27 TraesCS1B01G124500 chr4D 76.303 844 161 33 2187 3009 428717520 428718345 8.370000e-112 414.0
28 TraesCS1B01G124500 chr4D 73.613 811 181 29 2166 2961 428941608 428940816 8.860000e-72 281.0
29 TraesCS1B01G124500 chr4D 93.548 186 11 1 3997 4182 337942727 337942911 4.120000e-70 276.0
30 TraesCS1B01G124500 chr4B 76.005 821 162 31 2208 3009 526736876 526736072 3.920000e-105 392.0
31 TraesCS1B01G124500 chr4B 73.246 841 192 27 2137 2962 526274995 526275817 4.120000e-70 276.0
32 TraesCS1B01G124500 chr4B 87.288 236 20 4 3490 3723 661535176 661534949 1.150000e-65 261.0
33 TraesCS1B01G124500 chr4B 84.874 238 24 5 3490 3725 667405627 667405400 3.250000e-56 230.0
34 TraesCS1B01G124500 chr4B 93.023 43 2 1 3490 3532 661231930 661231971 1.260000e-05 62.1
35 TraesCS1B01G124500 chr4A 75.213 823 165 32 2208 3009 37784988 37784184 1.850000e-93 353.0
36 TraesCS1B01G124500 chr4A 94.022 184 10 1 4002 4185 185194841 185194659 1.150000e-70 278.0
37 TraesCS1B01G124500 chr4A 85.774 239 23 6 3490 3725 700752063 700752293 4.180000e-60 243.0
38 TraesCS1B01G124500 chr6B 93.684 190 10 2 3997 4185 12738696 12738884 2.460000e-72 283.0
39 TraesCS1B01G124500 chr6B 86.555 238 22 4 3490 3725 12738387 12738616 1.930000e-63 254.0
40 TraesCS1B01G124500 chr6B 95.556 45 1 1 180 224 716319829 716319786 2.090000e-08 71.3
41 TraesCS1B01G124500 chr7D 94.054 185 9 2 4001 4185 618685948 618686130 3.190000e-71 279.0
42 TraesCS1B01G124500 chr7D 85.656 244 19 8 3490 3725 20724130 20723895 4.180000e-60 243.0
43 TraesCS1B01G124500 chr7D 83.966 237 21 11 3490 3723 615225817 615225595 1.180000e-50 211.0
44 TraesCS1B01G124500 chr5D 87.755 245 20 4 3481 3723 375320536 375320772 1.150000e-70 278.0
45 TraesCS1B01G124500 chr5D 88.235 238 18 7 3490 3725 550472294 550472523 4.120000e-70 276.0
46 TraesCS1B01G124500 chr5D 87.342 237 21 6 3490 3725 550473374 550473602 3.210000e-66 263.0
47 TraesCS1B01G124500 chr5D 86.975 238 20 5 3490 3725 537916766 537916994 1.490000e-64 257.0
48 TraesCS1B01G124500 chr5D 77.108 166 29 7 3490 3654 486744260 486744103 2.070000e-13 87.9
49 TraesCS1B01G124500 chr7B 85.714 259 24 6 3472 3725 290928934 290928684 1.150000e-65 261.0
50 TraesCS1B01G124500 chr3B 87.234 235 20 4 3490 3723 423171241 423171016 4.150000e-65 259.0
51 TraesCS1B01G124500 chr5A 83.197 244 25 9 3490 3725 473057286 473057051 4.240000e-50 209.0
52 TraesCS1B01G124500 chr5A 83.333 240 24 7 3490 3721 683596928 683596697 1.520000e-49 207.0
53 TraesCS1B01G124500 chr5A 97.826 46 0 1 179 224 12258625 12258581 1.250000e-10 78.7
54 TraesCS1B01G124500 chr5A 93.878 49 2 1 180 228 52174400 52174353 5.800000e-09 73.1
55 TraesCS1B01G124500 chr6A 81.967 244 28 7 3490 3725 504353255 504353020 4.270000e-45 193.0
56 TraesCS1B01G124500 chr6A 78.746 287 18 14 470 713 28259390 28259104 7.250000e-33 152.0
57 TraesCS1B01G124500 chr5B 79.152 283 20 15 470 713 507811462 507811744 4.330000e-35 159.0
58 TraesCS1B01G124500 chr5B 94.231 52 3 0 628 679 518471987 518472038 3.470000e-11 80.5
59 TraesCS1B01G124500 chr5B 95.652 46 0 2 180 224 16339772 16339816 5.800000e-09 73.1
60 TraesCS1B01G124500 chr5B 95.652 46 1 1 180 225 469493492 469493448 5.800000e-09 73.1
61 TraesCS1B01G124500 chr5B 100.000 37 0 0 183 219 437565788 437565824 7.510000e-08 69.4
62 TraesCS1B01G124500 chr5B 93.478 46 2 1 180 225 469802638 469802594 2.700000e-07 67.6
63 TraesCS1B01G124500 chr3A 78.723 282 21 11 470 713 711532005 711532285 7.250000e-33 152.0
64 TraesCS1B01G124500 chr7A 79.412 136 18 7 3490 3624 130192426 130192552 2.070000e-13 87.9
65 TraesCS1B01G124500 chr3D 97.778 45 0 1 180 224 587944956 587944913 4.490000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G124500 chr1B 151068483 151072667 4184 True 3614.500000 6879 100.000000 1 4185 2 chr1B.!!$R1 4184
1 TraesCS1B01G124500 chr1D 100660204 100663424 3220 False 4076.000000 4076 89.618000 227 3490 1 chr1D.!!$F2 3263
2 TraesCS1B01G124500 chr1A 104920011 104923012 3001 True 3687.000000 3687 89.050000 240 3263 1 chr1A.!!$R1 3023
3 TraesCS1B01G124500 chr2D 651648800 651649932 1132 False 725.000000 725 78.322000 1962 3100 1 chr2D.!!$F2 1138
4 TraesCS1B01G124500 chr2D 602450471 602453287 2816 True 512.933333 1267 87.225333 1201 3213 3 chr2D.!!$R2 2012
5 TraesCS1B01G124500 chr2B 732567401 732569180 1779 True 782.000000 1262 81.312000 1353 3213 2 chr2B.!!$R3 1860
6 TraesCS1B01G124500 chr2A 776021859 776022994 1135 True 702.000000 702 77.942000 1962 3103 1 chr2A.!!$R2 1141
7 TraesCS1B01G124500 chrUn 23651953 23653088 1135 True 691.000000 691 77.787000 1962 3103 1 chrUn.!!$R1 1141
8 TraesCS1B01G124500 chr4D 428717520 428718345 825 False 414.000000 414 76.303000 2187 3009 1 chr4D.!!$F2 822
9 TraesCS1B01G124500 chr4D 428940816 428941608 792 True 281.000000 281 73.613000 2166 2961 1 chr4D.!!$R1 795
10 TraesCS1B01G124500 chr4B 526736072 526736876 804 True 392.000000 392 76.005000 2208 3009 1 chr4B.!!$R1 801
11 TraesCS1B01G124500 chr4B 526274995 526275817 822 False 276.000000 276 73.246000 2137 2962 1 chr4B.!!$F1 825
12 TraesCS1B01G124500 chr4A 37784184 37784988 804 True 353.000000 353 75.213000 2208 3009 1 chr4A.!!$R1 801
13 TraesCS1B01G124500 chr5D 550472294 550473602 1308 False 269.500000 276 87.788500 3490 3725 2 chr5D.!!$F3 235

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.034477 GATCCATGTGTCGGGGGTTT 60.034 55.0 0.00 0.0 0.00 3.27 F
136 137 0.183971 TGTGTCGGGGGTTTGTGATT 59.816 50.0 0.00 0.0 0.00 2.57 F
138 139 0.183971 TGTCGGGGGTTTGTGATTGT 59.816 50.0 0.00 0.0 0.00 2.71 F
1193 1251 0.035056 CGCATCTCTGTTTCCCCCTT 60.035 55.0 0.00 0.0 0.00 3.95 F
1197 1255 0.110486 TCTCTGTTTCCCCCTTGCAC 59.890 55.0 0.00 0.0 0.00 4.57 F
1876 2855 0.174617 GAGCTCTTCTTCGAGGTGGG 59.825 60.0 6.43 0.0 41.44 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1232 0.035056 AAGGGGGAAACAGAGATGCG 60.035 55.000 0.00 0.00 0.00 4.73 R
1188 1246 0.039618 ACCCTACAATGTGCAAGGGG 59.960 55.000 20.46 13.89 44.25 4.79 R
1388 2305 0.676466 TGATGCCGCCTTTGTACAGG 60.676 55.000 0.00 0.00 36.95 4.00 R
2780 3775 2.142761 TGAGCCAGATGGGGATCCG 61.143 63.158 5.45 0.00 42.69 4.18 R
2783 3778 2.446848 CGGTGAGCCAGATGGGGAT 61.447 63.158 0.12 0.00 37.04 3.85 R
3331 4327 0.172803 GACGCAACGGGTCATCTACT 59.827 55.000 6.33 0.00 43.51 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.713288 CAACGTCGATATTAGGAAGGCA 58.287 45.455 0.00 0.00 0.00 4.75
22 23 4.307432 CAACGTCGATATTAGGAAGGCAT 58.693 43.478 0.00 0.00 0.00 4.40
23 24 4.175787 ACGTCGATATTAGGAAGGCATC 57.824 45.455 0.00 0.00 0.00 3.91
32 33 3.490890 GAAGGCATCCACGACTGC 58.509 61.111 0.00 0.00 37.66 4.40
33 34 1.078848 GAAGGCATCCACGACTGCT 60.079 57.895 0.00 0.00 38.45 4.24
34 35 0.674895 GAAGGCATCCACGACTGCTT 60.675 55.000 0.00 0.00 38.45 3.91
35 36 0.957395 AAGGCATCCACGACTGCTTG 60.957 55.000 0.00 0.00 38.45 4.01
36 37 1.375908 GGCATCCACGACTGCTTGA 60.376 57.895 0.00 0.00 38.45 3.02
37 38 0.745845 GGCATCCACGACTGCTTGAT 60.746 55.000 0.00 0.00 38.45 2.57
38 39 0.376152 GCATCCACGACTGCTTGATG 59.624 55.000 0.00 0.00 35.49 3.07
39 40 2.008543 GCATCCACGACTGCTTGATGA 61.009 52.381 0.00 0.00 35.49 2.92
40 41 2.349590 CATCCACGACTGCTTGATGAA 58.650 47.619 0.00 0.00 0.00 2.57
41 42 2.768253 TCCACGACTGCTTGATGAAT 57.232 45.000 0.00 0.00 0.00 2.57
42 43 2.349590 TCCACGACTGCTTGATGAATG 58.650 47.619 0.00 0.00 0.00 2.67
43 44 1.202110 CCACGACTGCTTGATGAATGC 60.202 52.381 0.00 0.00 0.00 3.56
44 45 1.465777 CACGACTGCTTGATGAATGCA 59.534 47.619 0.00 0.00 35.30 3.96
45 46 1.466167 ACGACTGCTTGATGAATGCAC 59.534 47.619 0.00 0.00 32.91 4.57
46 47 1.202110 CGACTGCTTGATGAATGCACC 60.202 52.381 0.00 0.00 32.91 5.01
47 48 0.806868 ACTGCTTGATGAATGCACCG 59.193 50.000 0.00 0.00 32.91 4.94
48 49 0.806868 CTGCTTGATGAATGCACCGT 59.193 50.000 0.00 0.00 32.91 4.83
49 50 0.804364 TGCTTGATGAATGCACCGTC 59.196 50.000 0.00 0.00 0.00 4.79
50 51 0.247814 GCTTGATGAATGCACCGTCG 60.248 55.000 0.00 0.00 0.00 5.12
51 52 1.358877 CTTGATGAATGCACCGTCGA 58.641 50.000 0.00 0.00 0.00 4.20
52 53 1.935873 CTTGATGAATGCACCGTCGAT 59.064 47.619 0.00 0.00 0.00 3.59
53 54 2.022764 TGATGAATGCACCGTCGATT 57.977 45.000 0.00 0.00 0.00 3.34
54 55 1.665169 TGATGAATGCACCGTCGATTG 59.335 47.619 0.00 0.00 0.00 2.67
55 56 1.003545 GATGAATGCACCGTCGATTGG 60.004 52.381 5.21 5.21 0.00 3.16
56 57 0.321210 TGAATGCACCGTCGATTGGT 60.321 50.000 6.49 6.49 41.47 3.67
61 62 2.741092 ACCGTCGATTGGTGCTGT 59.259 55.556 11.11 0.00 38.60 4.40
62 63 1.374252 ACCGTCGATTGGTGCTGTC 60.374 57.895 11.11 0.00 38.60 3.51
63 64 2.100631 CCGTCGATTGGTGCTGTCC 61.101 63.158 0.00 0.00 0.00 4.02
64 65 2.444624 CGTCGATTGGTGCTGTCCG 61.445 63.158 0.00 0.00 0.00 4.79
65 66 1.080093 GTCGATTGGTGCTGTCCGA 60.080 57.895 0.00 0.00 0.00 4.55
66 67 0.460284 GTCGATTGGTGCTGTCCGAT 60.460 55.000 0.00 0.00 34.56 4.18
67 68 0.460109 TCGATTGGTGCTGTCCGATG 60.460 55.000 0.00 0.00 32.23 3.84
68 69 0.740868 CGATTGGTGCTGTCCGATGT 60.741 55.000 0.00 0.00 32.23 3.06
69 70 0.729116 GATTGGTGCTGTCCGATGTG 59.271 55.000 0.00 0.00 32.23 3.21
70 71 0.036732 ATTGGTGCTGTCCGATGTGT 59.963 50.000 0.00 0.00 31.00 3.72
71 72 0.179032 TTGGTGCTGTCCGATGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
72 73 0.884259 TGGTGCTGTCCGATGTGTTG 60.884 55.000 0.00 0.00 0.00 3.33
73 74 1.577328 GGTGCTGTCCGATGTGTTGG 61.577 60.000 0.00 0.00 0.00 3.77
74 75 0.884704 GTGCTGTCCGATGTGTTGGT 60.885 55.000 0.00 0.00 0.00 3.67
75 76 0.602638 TGCTGTCCGATGTGTTGGTC 60.603 55.000 0.00 0.00 0.00 4.02
76 77 0.320771 GCTGTCCGATGTGTTGGTCT 60.321 55.000 0.00 0.00 0.00 3.85
77 78 1.067142 GCTGTCCGATGTGTTGGTCTA 60.067 52.381 0.00 0.00 0.00 2.59
78 79 2.418746 GCTGTCCGATGTGTTGGTCTAT 60.419 50.000 0.00 0.00 0.00 1.98
79 80 3.190079 CTGTCCGATGTGTTGGTCTATG 58.810 50.000 0.00 0.00 0.00 2.23
80 81 2.565391 TGTCCGATGTGTTGGTCTATGT 59.435 45.455 0.00 0.00 0.00 2.29
81 82 3.764972 TGTCCGATGTGTTGGTCTATGTA 59.235 43.478 0.00 0.00 0.00 2.29
82 83 4.404394 TGTCCGATGTGTTGGTCTATGTAT 59.596 41.667 0.00 0.00 0.00 2.29
83 84 5.105106 TGTCCGATGTGTTGGTCTATGTATT 60.105 40.000 0.00 0.00 0.00 1.89
84 85 5.234329 GTCCGATGTGTTGGTCTATGTATTG 59.766 44.000 0.00 0.00 0.00 1.90
85 86 5.105106 TCCGATGTGTTGGTCTATGTATTGT 60.105 40.000 0.00 0.00 0.00 2.71
86 87 5.584649 CCGATGTGTTGGTCTATGTATTGTT 59.415 40.000 0.00 0.00 0.00 2.83
87 88 6.093495 CCGATGTGTTGGTCTATGTATTGTTT 59.907 38.462 0.00 0.00 0.00 2.83
88 89 7.361713 CCGATGTGTTGGTCTATGTATTGTTTT 60.362 37.037 0.00 0.00 0.00 2.43
89 90 8.020819 CGATGTGTTGGTCTATGTATTGTTTTT 58.979 33.333 0.00 0.00 0.00 1.94
107 108 4.985538 TTTTTGGGTACGTTTGTGATGT 57.014 36.364 0.00 0.00 0.00 3.06
108 109 3.972950 TTTGGGTACGTTTGTGATGTG 57.027 42.857 0.00 0.00 0.00 3.21
109 110 1.885560 TGGGTACGTTTGTGATGTGG 58.114 50.000 0.00 0.00 0.00 4.17
110 111 1.141254 TGGGTACGTTTGTGATGTGGT 59.859 47.619 0.00 0.00 0.00 4.16
111 112 1.533731 GGGTACGTTTGTGATGTGGTG 59.466 52.381 0.00 0.00 0.00 4.17
112 113 2.485903 GGTACGTTTGTGATGTGGTGA 58.514 47.619 0.00 0.00 0.00 4.02
113 114 3.071479 GGTACGTTTGTGATGTGGTGAT 58.929 45.455 0.00 0.00 0.00 3.06
114 115 3.124636 GGTACGTTTGTGATGTGGTGATC 59.875 47.826 0.00 0.00 0.00 2.92
115 116 2.151202 ACGTTTGTGATGTGGTGATCC 58.849 47.619 0.00 0.00 0.00 3.36
116 117 2.150390 CGTTTGTGATGTGGTGATCCA 58.850 47.619 0.00 0.00 42.05 3.41
117 118 2.749076 CGTTTGTGATGTGGTGATCCAT 59.251 45.455 0.00 0.00 46.20 3.41
118 119 3.426560 CGTTTGTGATGTGGTGATCCATG 60.427 47.826 0.00 0.00 46.20 3.66
119 120 3.438216 TTGTGATGTGGTGATCCATGT 57.562 42.857 0.00 0.00 46.20 3.21
120 121 2.713877 TGTGATGTGGTGATCCATGTG 58.286 47.619 0.00 0.00 46.20 3.21
121 122 2.040145 TGTGATGTGGTGATCCATGTGT 59.960 45.455 0.00 0.00 46.20 3.72
122 123 2.679837 GTGATGTGGTGATCCATGTGTC 59.320 50.000 0.00 0.00 46.20 3.67
123 124 1.935873 GATGTGGTGATCCATGTGTCG 59.064 52.381 0.00 0.00 46.20 4.35
124 125 0.036483 TGTGGTGATCCATGTGTCGG 60.036 55.000 0.00 0.00 46.20 4.79
125 126 0.744414 GTGGTGATCCATGTGTCGGG 60.744 60.000 0.00 0.00 46.20 5.14
126 127 1.153168 GGTGATCCATGTGTCGGGG 60.153 63.158 0.00 0.00 0.00 5.73
127 128 1.153168 GTGATCCATGTGTCGGGGG 60.153 63.158 0.00 0.00 0.00 5.40
128 129 1.615124 TGATCCATGTGTCGGGGGT 60.615 57.895 0.00 0.00 0.00 4.95
129 130 1.204786 TGATCCATGTGTCGGGGGTT 61.205 55.000 0.00 0.00 0.00 4.11
130 131 0.034477 GATCCATGTGTCGGGGGTTT 60.034 55.000 0.00 0.00 0.00 3.27
131 132 0.323360 ATCCATGTGTCGGGGGTTTG 60.323 55.000 0.00 0.00 0.00 2.93
132 133 1.228429 CCATGTGTCGGGGGTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
133 134 1.523154 CCATGTGTCGGGGGTTTGTG 61.523 60.000 0.00 0.00 0.00 3.33
134 135 0.536233 CATGTGTCGGGGGTTTGTGA 60.536 55.000 0.00 0.00 0.00 3.58
135 136 0.404040 ATGTGTCGGGGGTTTGTGAT 59.596 50.000 0.00 0.00 0.00 3.06
136 137 0.183971 TGTGTCGGGGGTTTGTGATT 59.816 50.000 0.00 0.00 0.00 2.57
137 138 0.596082 GTGTCGGGGGTTTGTGATTG 59.404 55.000 0.00 0.00 0.00 2.67
138 139 0.183971 TGTCGGGGGTTTGTGATTGT 59.816 50.000 0.00 0.00 0.00 2.71
139 140 1.420514 TGTCGGGGGTTTGTGATTGTA 59.579 47.619 0.00 0.00 0.00 2.41
140 141 2.081462 GTCGGGGGTTTGTGATTGTAG 58.919 52.381 0.00 0.00 0.00 2.74
141 142 0.808755 CGGGGGTTTGTGATTGTAGC 59.191 55.000 0.00 0.00 0.00 3.58
142 143 1.884497 CGGGGGTTTGTGATTGTAGCA 60.884 52.381 0.00 0.00 0.00 3.49
143 144 2.456577 GGGGGTTTGTGATTGTAGCAT 58.543 47.619 0.00 0.00 0.00 3.79
144 145 2.166254 GGGGGTTTGTGATTGTAGCATG 59.834 50.000 0.00 0.00 0.00 4.06
145 146 2.825532 GGGGTTTGTGATTGTAGCATGT 59.174 45.455 0.00 0.00 0.00 3.21
146 147 3.258123 GGGGTTTGTGATTGTAGCATGTT 59.742 43.478 0.00 0.00 0.00 2.71
147 148 4.485163 GGGTTTGTGATTGTAGCATGTTC 58.515 43.478 0.00 0.00 0.00 3.18
148 149 4.485163 GGTTTGTGATTGTAGCATGTTCC 58.515 43.478 0.00 0.00 0.00 3.62
149 150 4.022416 GGTTTGTGATTGTAGCATGTTCCA 60.022 41.667 0.00 0.00 0.00 3.53
150 151 5.508825 GGTTTGTGATTGTAGCATGTTCCAA 60.509 40.000 0.00 0.00 0.00 3.53
151 152 5.375417 TTGTGATTGTAGCATGTTCCAAG 57.625 39.130 0.00 0.00 0.00 3.61
152 153 4.650734 TGTGATTGTAGCATGTTCCAAGA 58.349 39.130 0.00 0.00 0.00 3.02
153 154 5.255687 TGTGATTGTAGCATGTTCCAAGAT 58.744 37.500 0.00 0.00 0.00 2.40
154 155 5.711506 TGTGATTGTAGCATGTTCCAAGATT 59.288 36.000 0.00 0.00 0.00 2.40
155 156 6.883756 TGTGATTGTAGCATGTTCCAAGATTA 59.116 34.615 0.00 0.00 0.00 1.75
156 157 7.392953 TGTGATTGTAGCATGTTCCAAGATTAA 59.607 33.333 0.00 0.00 0.00 1.40
157 158 7.912250 GTGATTGTAGCATGTTCCAAGATTAAG 59.088 37.037 0.00 0.00 0.00 1.85
158 159 7.828717 TGATTGTAGCATGTTCCAAGATTAAGA 59.171 33.333 0.00 0.00 0.00 2.10
159 160 8.757982 ATTGTAGCATGTTCCAAGATTAAGAT 57.242 30.769 0.00 0.00 0.00 2.40
160 161 9.851686 ATTGTAGCATGTTCCAAGATTAAGATA 57.148 29.630 0.00 0.00 0.00 1.98
161 162 8.662781 TGTAGCATGTTCCAAGATTAAGATAC 57.337 34.615 0.00 0.00 0.00 2.24
162 163 8.264347 TGTAGCATGTTCCAAGATTAAGATACA 58.736 33.333 0.00 0.00 0.00 2.29
163 164 9.277783 GTAGCATGTTCCAAGATTAAGATACAT 57.722 33.333 0.00 0.00 0.00 2.29
164 165 8.757982 AGCATGTTCCAAGATTAAGATACATT 57.242 30.769 0.00 0.00 0.00 2.71
165 166 8.627403 AGCATGTTCCAAGATTAAGATACATTG 58.373 33.333 0.00 0.00 0.00 2.82
166 167 8.623903 GCATGTTCCAAGATTAAGATACATTGA 58.376 33.333 0.00 0.00 0.00 2.57
177 178 9.875675 GATTAAGATACATTGAATTGAGAGTGC 57.124 33.333 0.00 0.00 0.00 4.40
178 179 8.791327 TTAAGATACATTGAATTGAGAGTGCA 57.209 30.769 0.00 0.00 0.00 4.57
179 180 7.876936 AAGATACATTGAATTGAGAGTGCAT 57.123 32.000 0.00 0.00 0.00 3.96
180 181 7.876936 AGATACATTGAATTGAGAGTGCATT 57.123 32.000 0.00 0.00 0.00 3.56
181 182 8.289939 AGATACATTGAATTGAGAGTGCATTT 57.710 30.769 0.00 0.00 0.00 2.32
182 183 8.746530 AGATACATTGAATTGAGAGTGCATTTT 58.253 29.630 0.00 0.00 0.00 1.82
183 184 9.362539 GATACATTGAATTGAGAGTGCATTTTT 57.637 29.630 0.00 0.00 0.00 1.94
206 207 7.489574 TTTTGAATTGTTTGGATTGCTTACC 57.510 32.000 0.00 0.00 0.00 2.85
207 208 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
208 209 5.537188 TGAATTGTTTGGATTGCTTACCAC 58.463 37.500 0.00 0.00 35.81 4.16
209 210 5.069648 TGAATTGTTTGGATTGCTTACCACA 59.930 36.000 0.00 0.00 35.81 4.17
210 211 5.743636 ATTGTTTGGATTGCTTACCACAT 57.256 34.783 0.00 0.00 35.81 3.21
211 212 4.517952 TGTTTGGATTGCTTACCACATG 57.482 40.909 0.00 0.00 35.81 3.21
212 213 3.894427 TGTTTGGATTGCTTACCACATGT 59.106 39.130 0.00 0.00 35.81 3.21
213 214 5.073428 TGTTTGGATTGCTTACCACATGTA 58.927 37.500 0.00 0.00 35.81 2.29
214 215 5.714333 TGTTTGGATTGCTTACCACATGTAT 59.286 36.000 0.00 0.00 35.81 2.29
215 216 6.127758 TGTTTGGATTGCTTACCACATGTATC 60.128 38.462 0.00 0.00 35.81 2.24
216 217 5.109500 TGGATTGCTTACCACATGTATCA 57.891 39.130 0.00 0.00 0.00 2.15
217 218 4.881273 TGGATTGCTTACCACATGTATCAC 59.119 41.667 0.00 0.00 0.00 3.06
218 219 4.024893 GGATTGCTTACCACATGTATCACG 60.025 45.833 0.00 0.00 0.00 4.35
219 220 3.603158 TGCTTACCACATGTATCACGT 57.397 42.857 0.00 0.00 0.00 4.49
220 221 3.932822 TGCTTACCACATGTATCACGTT 58.067 40.909 0.00 0.00 0.00 3.99
221 222 3.682377 TGCTTACCACATGTATCACGTTG 59.318 43.478 0.00 0.00 0.00 4.10
222 223 3.063452 GCTTACCACATGTATCACGTTGG 59.937 47.826 0.00 0.00 0.00 3.77
223 224 2.851263 ACCACATGTATCACGTTGGT 57.149 45.000 0.00 0.00 0.00 3.67
224 225 3.965379 ACCACATGTATCACGTTGGTA 57.035 42.857 0.00 0.00 0.00 3.25
225 226 4.481368 ACCACATGTATCACGTTGGTAT 57.519 40.909 0.00 0.00 0.00 2.73
233 234 6.656314 TGTATCACGTTGGTATGAATTGAC 57.344 37.500 0.00 0.00 0.00 3.18
250 251 6.543465 TGAATTGACAGTGCCCTAAGAATATG 59.457 38.462 0.00 0.00 0.00 1.78
251 252 5.692115 TTGACAGTGCCCTAAGAATATGA 57.308 39.130 0.00 0.00 0.00 2.15
259 260 5.180868 GTGCCCTAAGAATATGAGAATGCAG 59.819 44.000 0.00 0.00 0.00 4.41
264 265 8.512956 CCCTAAGAATATGAGAATGCAGAATTG 58.487 37.037 0.00 0.00 0.00 2.32
269 270 8.577296 AGAATATGAGAATGCAGAATTGATTGG 58.423 33.333 0.00 0.00 0.00 3.16
270 271 4.994907 TGAGAATGCAGAATTGATTGGG 57.005 40.909 0.00 0.00 0.00 4.12
278 279 6.713762 TGCAGAATTGATTGGGTATTTAGG 57.286 37.500 0.00 0.00 0.00 2.69
317 318 3.008157 TGTCCGGTTGATTAGCTACCAAA 59.992 43.478 0.00 0.00 41.74 3.28
322 323 5.048294 CCGGTTGATTAGCTACCAAACTTTT 60.048 40.000 16.53 0.00 41.74 2.27
323 324 6.149807 CCGGTTGATTAGCTACCAAACTTTTA 59.850 38.462 16.53 0.00 41.74 1.52
482 483 4.768583 AGGACTTGATCTTCTGAAGCATC 58.231 43.478 12.54 14.91 0.00 3.91
507 508 6.183360 CGTCAAGTCTTTCCGATTCTAGACTA 60.183 42.308 0.00 0.00 44.79 2.59
526 527 4.910585 GCAGGTCGGCGTATGGGG 62.911 72.222 6.85 0.00 0.00 4.96
537 538 1.567504 CGTATGGGGACTTAGTTGCG 58.432 55.000 0.00 0.00 0.00 4.85
538 539 1.135527 CGTATGGGGACTTAGTTGCGA 59.864 52.381 0.00 0.00 0.00 5.10
539 540 2.417651 CGTATGGGGACTTAGTTGCGAA 60.418 50.000 0.00 0.00 0.00 4.70
540 541 2.403252 ATGGGGACTTAGTTGCGAAG 57.597 50.000 0.00 0.00 0.00 3.79
541 542 1.344065 TGGGGACTTAGTTGCGAAGA 58.656 50.000 0.00 0.00 0.00 2.87
542 543 1.906574 TGGGGACTTAGTTGCGAAGAT 59.093 47.619 0.00 0.00 0.00 2.40
543 544 2.304761 TGGGGACTTAGTTGCGAAGATT 59.695 45.455 0.00 0.00 0.00 2.40
545 546 4.020039 TGGGGACTTAGTTGCGAAGATTAA 60.020 41.667 0.00 0.00 0.00 1.40
546 547 4.939439 GGGGACTTAGTTGCGAAGATTAAA 59.061 41.667 0.00 0.00 0.00 1.52
547 548 5.064834 GGGGACTTAGTTGCGAAGATTAAAG 59.935 44.000 0.00 0.00 0.00 1.85
549 550 5.447413 GGACTTAGTTGCGAAGATTAAAGCC 60.447 44.000 0.00 0.00 0.00 4.35
550 551 4.395231 ACTTAGTTGCGAAGATTAAAGCCC 59.605 41.667 0.00 0.00 0.00 5.19
551 552 2.790433 AGTTGCGAAGATTAAAGCCCA 58.210 42.857 0.00 0.00 0.00 5.36
553 554 2.192664 TGCGAAGATTAAAGCCCACA 57.807 45.000 0.00 0.00 0.00 4.17
554 555 2.722094 TGCGAAGATTAAAGCCCACAT 58.278 42.857 0.00 0.00 0.00 3.21
555 556 2.423185 TGCGAAGATTAAAGCCCACATG 59.577 45.455 0.00 0.00 0.00 3.21
556 557 2.796032 GCGAAGATTAAAGCCCACATGC 60.796 50.000 0.00 0.00 0.00 4.06
557 558 2.684881 CGAAGATTAAAGCCCACATGCT 59.315 45.455 0.00 0.00 45.43 3.79
564 565 3.815133 AGCCCACATGCTTATCAGG 57.185 52.632 0.00 0.00 38.85 3.86
565 566 1.216064 AGCCCACATGCTTATCAGGA 58.784 50.000 0.00 0.00 38.85 3.86
566 567 1.565759 AGCCCACATGCTTATCAGGAA 59.434 47.619 0.00 0.00 38.85 3.36
567 568 1.952296 GCCCACATGCTTATCAGGAAG 59.048 52.381 0.00 0.00 0.00 3.46
569 570 3.749954 GCCCACATGCTTATCAGGAAGAT 60.750 47.826 0.00 0.00 40.86 2.40
570 571 4.467769 CCCACATGCTTATCAGGAAGATT 58.532 43.478 0.00 0.00 38.19 2.40
584 585 7.437713 TCAGGAAGATTAGAGCAAAATAGGA 57.562 36.000 0.00 0.00 0.00 2.94
597 598 7.559170 AGAGCAAAATAGGATAGCAGATTGTTT 59.441 33.333 0.00 0.00 0.00 2.83
607 608 7.725397 AGGATAGCAGATTGTTTGGCATTATAA 59.275 33.333 0.00 0.00 0.00 0.98
608 609 8.359642 GGATAGCAGATTGTTTGGCATTATAAA 58.640 33.333 0.00 0.00 0.00 1.40
609 610 9.403110 GATAGCAGATTGTTTGGCATTATAAAG 57.597 33.333 0.00 0.00 0.00 1.85
613 614 7.545265 GCAGATTGTTTGGCATTATAAAGTCAA 59.455 33.333 3.72 3.72 0.00 3.18
614 615 9.590451 CAGATTGTTTGGCATTATAAAGTCAAT 57.410 29.630 8.41 4.53 0.00 2.57
615 616 9.590451 AGATTGTTTGGCATTATAAAGTCAATG 57.410 29.630 8.41 0.00 35.64 2.82
616 617 9.585099 GATTGTTTGGCATTATAAAGTCAATGA 57.415 29.630 8.41 0.00 34.69 2.57
618 619 7.319646 TGTTTGGCATTATAAAGTCAATGACC 58.680 34.615 10.12 0.85 39.07 4.02
620 621 4.578516 TGGCATTATAAAGTCAATGACCGG 59.421 41.667 10.12 0.00 39.07 5.28
621 622 4.537015 GCATTATAAAGTCAATGACCGGC 58.463 43.478 10.12 0.00 34.69 6.13
622 623 4.556699 GCATTATAAAGTCAATGACCGGCC 60.557 45.833 10.12 0.00 34.69 6.13
623 624 2.799126 ATAAAGTCAATGACCGGCCA 57.201 45.000 10.12 0.00 32.18 5.36
624 625 1.816074 TAAAGTCAATGACCGGCCAC 58.184 50.000 10.12 0.00 32.18 5.01
625 626 1.234615 AAAGTCAATGACCGGCCACG 61.235 55.000 10.12 0.00 40.55 4.94
626 627 3.799755 GTCAATGACCGGCCACGC 61.800 66.667 0.00 0.00 39.22 5.34
705 717 5.083821 TGGAATAAAACTCCCTTTTCCCTG 58.916 41.667 0.00 0.00 33.84 4.45
706 718 5.162925 TGGAATAAAACTCCCTTTTCCCTGA 60.163 40.000 0.00 0.00 33.84 3.86
707 719 5.778241 GGAATAAAACTCCCTTTTCCCTGAA 59.222 40.000 0.00 0.00 33.84 3.02
748 760 7.535258 CCATAAGTAGCACGATTTTAATGCATC 59.465 37.037 0.00 0.00 41.97 3.91
750 762 3.338818 AGCACGATTTTAATGCATCCG 57.661 42.857 0.00 0.00 41.97 4.18
773 795 3.635373 CACATAATGCATCCTCTTGCCTT 59.365 43.478 0.00 0.00 42.06 4.35
782 804 0.674895 CCTCTTGCCTTGTCTTCCGG 60.675 60.000 0.00 0.00 0.00 5.14
803 825 5.285651 CGGTTGAGCCAAAGATTTGTTTTA 58.714 37.500 4.71 0.00 36.45 1.52
877 911 2.016318 CCTTGGCATTATCAAGCACGA 58.984 47.619 0.00 0.00 40.00 4.35
907 941 5.871396 ACCCTATGCCTATATATTCACCG 57.129 43.478 0.00 0.00 0.00 4.94
908 942 4.654262 ACCCTATGCCTATATATTCACCGG 59.346 45.833 0.00 0.00 0.00 5.28
909 943 4.899457 CCCTATGCCTATATATTCACCGGA 59.101 45.833 9.46 0.00 0.00 5.14
910 944 5.221461 CCCTATGCCTATATATTCACCGGAC 60.221 48.000 9.46 0.00 0.00 4.79
911 945 5.362717 CCTATGCCTATATATTCACCGGACA 59.637 44.000 9.46 0.00 0.00 4.02
912 946 5.957771 ATGCCTATATATTCACCGGACAT 57.042 39.130 9.46 0.00 0.00 3.06
913 947 7.232737 CCTATGCCTATATATTCACCGGACATA 59.767 40.741 9.46 0.92 0.00 2.29
914 948 7.618019 ATGCCTATATATTCACCGGACATAT 57.382 36.000 9.46 9.12 0.00 1.78
915 949 7.432148 TGCCTATATATTCACCGGACATATT 57.568 36.000 9.46 1.37 0.00 1.28
916 950 7.497595 TGCCTATATATTCACCGGACATATTC 58.502 38.462 9.46 0.00 0.00 1.75
917 951 7.125053 TGCCTATATATTCACCGGACATATTCA 59.875 37.037 9.46 0.00 0.00 2.57
918 952 7.438459 GCCTATATATTCACCGGACATATTCAC 59.562 40.741 9.46 0.00 0.00 3.18
919 953 7.926555 CCTATATATTCACCGGACATATTCACC 59.073 40.741 9.46 0.00 0.00 4.02
941 996 3.082548 TCTCTCCGTCAAGTAGAAGTGG 58.917 50.000 0.00 0.00 0.00 4.00
948 1003 4.051922 CGTCAAGTAGAAGTGGCATATCC 58.948 47.826 0.00 0.00 0.00 2.59
952 1007 3.928754 AGTAGAAGTGGCATATCCCTGA 58.071 45.455 0.00 0.00 0.00 3.86
1016 1074 2.555732 ACCATGGGGAAATTGCTCAT 57.444 45.000 18.09 0.00 38.05 2.90
1072 1130 6.169557 AGTTTTCCCAAGTTCATTTTACCC 57.830 37.500 0.00 0.00 0.00 3.69
1114 1172 1.029681 GGAAGTTCCTTGCGGTTTGT 58.970 50.000 15.09 0.00 32.53 2.83
1118 1176 2.645802 AGTTCCTTGCGGTTTGTTGTA 58.354 42.857 0.00 0.00 0.00 2.41
1119 1177 2.356695 AGTTCCTTGCGGTTTGTTGTAC 59.643 45.455 0.00 0.00 0.00 2.90
1120 1178 2.335316 TCCTTGCGGTTTGTTGTACT 57.665 45.000 0.00 0.00 0.00 2.73
1121 1179 3.472283 TCCTTGCGGTTTGTTGTACTA 57.528 42.857 0.00 0.00 0.00 1.82
1122 1180 4.010667 TCCTTGCGGTTTGTTGTACTAT 57.989 40.909 0.00 0.00 0.00 2.12
1123 1181 5.149973 TCCTTGCGGTTTGTTGTACTATA 57.850 39.130 0.00 0.00 0.00 1.31
1161 1219 6.542005 TCACCGATTGCACATTGTAAGATATT 59.458 34.615 0.00 0.00 0.00 1.28
1169 1227 7.874940 TGCACATTGTAAGATATTCTAATGGC 58.125 34.615 11.53 11.45 31.64 4.40
1172 1230 8.011673 CACATTGTAAGATATTCTAATGGCGTG 58.988 37.037 11.53 0.00 31.64 5.34
1173 1231 7.931407 ACATTGTAAGATATTCTAATGGCGTGA 59.069 33.333 11.53 0.00 31.64 4.35
1174 1232 7.709269 TTGTAAGATATTCTAATGGCGTGAC 57.291 36.000 0.00 0.00 0.00 3.67
1175 1233 5.918576 TGTAAGATATTCTAATGGCGTGACG 59.081 40.000 0.00 0.00 0.00 4.35
1188 1246 0.716108 CGTGACGCATCTCTGTTTCC 59.284 55.000 0.00 0.00 0.00 3.13
1189 1247 1.079503 GTGACGCATCTCTGTTTCCC 58.920 55.000 0.00 0.00 0.00 3.97
1190 1248 0.036388 TGACGCATCTCTGTTTCCCC 60.036 55.000 0.00 0.00 0.00 4.81
1191 1249 0.744771 GACGCATCTCTGTTTCCCCC 60.745 60.000 0.00 0.00 0.00 5.40
1192 1250 1.201429 ACGCATCTCTGTTTCCCCCT 61.201 55.000 0.00 0.00 0.00 4.79
1193 1251 0.035056 CGCATCTCTGTTTCCCCCTT 60.035 55.000 0.00 0.00 0.00 3.95
1194 1252 1.467920 GCATCTCTGTTTCCCCCTTG 58.532 55.000 0.00 0.00 0.00 3.61
1195 1253 1.467920 CATCTCTGTTTCCCCCTTGC 58.532 55.000 0.00 0.00 0.00 4.01
1196 1254 1.075601 ATCTCTGTTTCCCCCTTGCA 58.924 50.000 0.00 0.00 0.00 4.08
1197 1255 0.110486 TCTCTGTTTCCCCCTTGCAC 59.890 55.000 0.00 0.00 0.00 4.57
1198 1256 0.178992 CTCTGTTTCCCCCTTGCACA 60.179 55.000 0.00 0.00 0.00 4.57
1199 1257 0.482446 TCTGTTTCCCCCTTGCACAT 59.518 50.000 0.00 0.00 0.00 3.21
1267 1325 6.954232 AGCATTAAGGCAAGTAGTACCTTTA 58.046 36.000 15.35 2.70 40.98 1.85
1268 1326 7.399634 AGCATTAAGGCAAGTAGTACCTTTAA 58.600 34.615 15.35 0.00 40.98 1.52
1269 1327 8.053355 AGCATTAAGGCAAGTAGTACCTTTAAT 58.947 33.333 15.35 0.00 40.98 1.40
1270 1328 8.683615 GCATTAAGGCAAGTAGTACCTTTAATT 58.316 33.333 7.33 0.00 40.98 1.40
1339 2002 8.375506 TCCTTCTTCTTATCTTGCAACTAAAGA 58.624 33.333 0.00 1.75 38.01 2.52
1355 2018 9.034544 GCAACTAAAGAATGTTGTTTTCATCTT 57.965 29.630 0.00 0.00 0.00 2.40
1388 2305 4.971125 GGCAGCCCGATACGAGCC 62.971 72.222 0.00 0.00 34.71 4.70
1406 2323 1.376609 CCCTGTACAAAGGCGGCATC 61.377 60.000 13.08 0.00 35.85 3.91
1409 2326 1.745087 CTGTACAAAGGCGGCATCATT 59.255 47.619 13.08 0.00 0.00 2.57
1592 2509 1.006162 GACCACCACTACTCCCTCTCT 59.994 57.143 0.00 0.00 0.00 3.10
1648 2615 8.323854 CGTCATTTACTTGTGATCTTGTGATAG 58.676 37.037 0.00 0.00 32.19 2.08
1653 2620 9.639601 TTTACTTGTGATCTTGTGATAGTACTG 57.360 33.333 5.39 0.00 32.19 2.74
1655 2622 8.349568 ACTTGTGATCTTGTGATAGTACTGTA 57.650 34.615 5.39 0.00 32.19 2.74
1876 2855 0.174617 GAGCTCTTCTTCGAGGTGGG 59.825 60.000 6.43 0.00 41.44 4.61
1878 2857 1.183549 GCTCTTCTTCGAGGTGGGTA 58.816 55.000 0.00 0.00 0.00 3.69
1881 2860 3.292460 CTCTTCTTCGAGGTGGGTAGAT 58.708 50.000 0.00 0.00 0.00 1.98
1892 2875 5.359194 AGGTGGGTAGATTGATTACACAG 57.641 43.478 0.00 0.00 35.25 3.66
1893 2876 4.164221 AGGTGGGTAGATTGATTACACAGG 59.836 45.833 0.00 0.00 35.25 4.00
1910 2893 2.223711 ACAGGAATTGTTCAACGCCAAC 60.224 45.455 7.78 0.00 36.31 3.77
1911 2894 1.339929 AGGAATTGTTCAACGCCAACC 59.660 47.619 7.78 0.00 0.00 3.77
1913 2896 2.482142 GGAATTGTTCAACGCCAACCAA 60.482 45.455 0.00 0.00 0.00 3.67
1918 2901 1.339929 GTTCAACGCCAACCAAGGAAT 59.660 47.619 0.00 0.00 0.00 3.01
1919 2902 1.698506 TCAACGCCAACCAAGGAATT 58.301 45.000 0.00 0.00 0.00 2.17
1920 2903 2.865079 TCAACGCCAACCAAGGAATTA 58.135 42.857 0.00 0.00 0.00 1.40
1921 2904 2.817258 TCAACGCCAACCAAGGAATTAG 59.183 45.455 0.00 0.00 0.00 1.73
1922 2905 2.556622 CAACGCCAACCAAGGAATTAGT 59.443 45.455 0.00 0.00 0.00 2.24
1923 2906 3.706600 ACGCCAACCAAGGAATTAGTA 57.293 42.857 0.00 0.00 0.00 1.82
1924 2907 4.230745 ACGCCAACCAAGGAATTAGTAT 57.769 40.909 0.00 0.00 0.00 2.12
1925 2908 4.196971 ACGCCAACCAAGGAATTAGTATC 58.803 43.478 0.00 0.00 0.00 2.24
1926 2909 4.080526 ACGCCAACCAAGGAATTAGTATCT 60.081 41.667 0.00 0.00 0.00 1.98
1927 2910 4.511826 CGCCAACCAAGGAATTAGTATCTC 59.488 45.833 0.00 0.00 0.00 2.75
1928 2911 5.685075 CGCCAACCAAGGAATTAGTATCTCT 60.685 44.000 0.00 0.00 0.00 3.10
1929 2912 6.462487 CGCCAACCAAGGAATTAGTATCTCTA 60.462 42.308 0.00 0.00 0.00 2.43
1930 2913 7.280356 GCCAACCAAGGAATTAGTATCTCTAA 58.720 38.462 0.00 0.00 41.98 2.10
1931 2914 7.226918 GCCAACCAAGGAATTAGTATCTCTAAC 59.773 40.741 0.00 0.00 40.80 2.34
2396 3379 4.329545 GGGTGAAGCCGCTGGACA 62.330 66.667 0.00 0.00 38.44 4.02
2503 3486 2.747686 GAGAACCTCCACGGGCAA 59.252 61.111 0.00 0.00 36.97 4.52
2657 3643 0.944311 CAGCAAGTACGTCGCCAAGT 60.944 55.000 0.00 0.00 0.00 3.16
3081 4076 2.202440 CGTCCACGGCGAGTACAG 60.202 66.667 16.62 0.00 35.37 2.74
3302 4298 5.282055 TCTTCAGAAATATCATCGCCACT 57.718 39.130 0.00 0.00 0.00 4.00
3305 4301 4.371786 TCAGAAATATCATCGCCACTGAC 58.628 43.478 0.00 0.00 0.00 3.51
3307 4303 2.154854 AATATCATCGCCACTGACGG 57.845 50.000 0.00 0.00 0.00 4.79
3331 4327 2.716424 ACCTCTTTGATGGGGAGAACAA 59.284 45.455 0.00 0.00 0.00 2.83
3332 4328 3.245052 ACCTCTTTGATGGGGAGAACAAG 60.245 47.826 0.00 0.00 0.00 3.16
3340 4336 4.162320 TGATGGGGAGAACAAGTAGATGAC 59.838 45.833 0.00 0.00 0.00 3.06
3350 4346 0.172803 AGTAGATGACCCGTTGCGTC 59.827 55.000 0.00 0.00 0.00 5.19
3351 4347 0.804933 GTAGATGACCCGTTGCGTCC 60.805 60.000 0.00 0.00 0.00 4.79
3364 4360 1.123077 TGCGTCCTTGGCATAGAGAT 58.877 50.000 0.00 0.00 35.04 2.75
3387 4383 2.287915 CACTGCAGCACGAAAGTTAAGT 59.712 45.455 15.27 0.00 46.40 2.24
3429 4425 7.254658 GCAACTAAGAAGTTAAGCAACACTGTA 60.255 37.037 0.00 0.00 44.28 2.74
3455 4451 3.441572 AGCATGTCTAACAAATGTCTGCC 59.558 43.478 0.00 0.00 0.00 4.85
3471 4467 4.353489 TGTCTGCCATATAAATCATCCCCA 59.647 41.667 0.00 0.00 0.00 4.96
3502 4498 5.551760 TTAGCATGAACTAGCAAAAGAGC 57.448 39.130 0.00 0.00 0.00 4.09
3512 4508 1.847890 GCAAAAGAGCCCGTGCGTTA 61.848 55.000 0.00 0.00 44.33 3.18
3517 4513 1.957186 GAGCCCGTGCGTTACAACA 60.957 57.895 0.00 0.00 44.33 3.33
3520 4516 2.322081 CCCGTGCGTTACAACAGGG 61.322 63.158 7.01 7.01 40.66 4.45
3521 4517 1.301087 CCGTGCGTTACAACAGGGA 60.301 57.895 7.96 0.00 43.01 4.20
3526 4522 3.549221 CGTGCGTTACAACAGGGAAAAAT 60.549 43.478 0.00 0.00 0.00 1.82
3528 4524 5.521544 GTGCGTTACAACAGGGAAAAATAA 58.478 37.500 0.00 0.00 0.00 1.40
3538 4534 8.478877 ACAACAGGGAAAAATAAATAACACACA 58.521 29.630 0.00 0.00 0.00 3.72
3549 4545 5.934935 AAATAACACACACTCTTAACCCG 57.065 39.130 0.00 0.00 0.00 5.28
3554 4550 3.181458 ACACACACTCTTAACCCGACAAT 60.181 43.478 0.00 0.00 0.00 2.71
3559 4555 4.020573 ACACTCTTAACCCGACAATCATCA 60.021 41.667 0.00 0.00 0.00 3.07
3560 4556 4.330074 CACTCTTAACCCGACAATCATCAC 59.670 45.833 0.00 0.00 0.00 3.06
3561 4557 4.223032 ACTCTTAACCCGACAATCATCACT 59.777 41.667 0.00 0.00 0.00 3.41
3562 4558 4.503910 TCTTAACCCGACAATCATCACTG 58.496 43.478 0.00 0.00 0.00 3.66
3563 4559 4.221924 TCTTAACCCGACAATCATCACTGA 59.778 41.667 0.00 0.00 35.41 3.41
3564 4560 3.417069 AACCCGACAATCATCACTGAA 57.583 42.857 0.00 0.00 34.37 3.02
3565 4561 2.977914 ACCCGACAATCATCACTGAAG 58.022 47.619 0.00 0.00 34.37 3.02
3614 4611 8.918202 TCCTTTATTTTAACGAGGCATCATAT 57.082 30.769 0.00 0.00 0.00 1.78
3624 4621 3.181498 CGAGGCATCATATTTGTGTTGCA 60.181 43.478 0.00 0.00 43.31 4.08
3669 4666 0.955428 GGCGATGGCTTCAGTGTTCA 60.955 55.000 0.00 0.00 39.81 3.18
3693 4690 6.677828 CACACAAATCAAAACGTGTTTGAATG 59.322 34.615 21.33 22.02 40.49 2.67
3702 4699 7.545965 TCAAAACGTGTTTGAATGTGGTTAATT 59.454 29.630 17.65 0.00 35.69 1.40
3721 4718 3.637911 TTCTAAGGCGTCTCTCTCTCT 57.362 47.619 0.00 0.00 0.00 3.10
4019 5016 3.374764 TCCAGAGGTATGCATGTGTAGT 58.625 45.455 10.16 0.00 0.00 2.73
4023 5020 5.928839 CCAGAGGTATGCATGTGTAGTTATC 59.071 44.000 10.16 0.00 0.00 1.75
4075 5073 2.494073 GGGTGTTTATTTGCAATCCGGA 59.506 45.455 6.61 6.61 0.00 5.14
4078 5076 4.035017 GTGTTTATTTGCAATCCGGATCG 58.965 43.478 19.43 7.99 0.00 3.69
4107 5105 6.199531 CCGATACGAAAGAAAAATGGATCGTA 59.800 38.462 8.08 8.08 45.94 3.43
4115 5113 7.639162 AAGAAAAATGGATCGTACGCTATAG 57.361 36.000 11.24 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.713288 TGCCTTCCTAATATCGACGTTG 58.287 45.455 0.00 0.00 0.00 4.10
1 2 4.557205 GATGCCTTCCTAATATCGACGTT 58.443 43.478 0.00 0.00 0.00 3.99
2 3 3.056749 GGATGCCTTCCTAATATCGACGT 60.057 47.826 0.00 0.00 41.78 4.34
3 4 3.056821 TGGATGCCTTCCTAATATCGACG 60.057 47.826 4.59 0.00 45.68 5.12
4 5 4.246458 GTGGATGCCTTCCTAATATCGAC 58.754 47.826 4.59 0.00 45.68 4.20
5 6 3.056821 CGTGGATGCCTTCCTAATATCGA 60.057 47.826 4.59 0.00 45.68 3.59
6 7 3.056821 TCGTGGATGCCTTCCTAATATCG 60.057 47.826 4.59 0.00 45.68 2.92
7 8 4.021016 AGTCGTGGATGCCTTCCTAATATC 60.021 45.833 4.59 0.00 45.68 1.63
8 9 3.904339 AGTCGTGGATGCCTTCCTAATAT 59.096 43.478 4.59 0.00 45.68 1.28
9 10 3.069586 CAGTCGTGGATGCCTTCCTAATA 59.930 47.826 4.59 0.00 45.68 0.98
10 11 2.119495 AGTCGTGGATGCCTTCCTAAT 58.881 47.619 4.59 0.00 45.68 1.73
11 12 1.207089 CAGTCGTGGATGCCTTCCTAA 59.793 52.381 4.59 0.00 45.68 2.69
12 13 0.824109 CAGTCGTGGATGCCTTCCTA 59.176 55.000 4.59 0.00 45.68 2.94
13 14 1.599047 CAGTCGTGGATGCCTTCCT 59.401 57.895 4.59 0.00 45.68 3.36
14 15 2.109126 GCAGTCGTGGATGCCTTCC 61.109 63.158 0.00 0.00 45.69 3.46
15 16 0.674895 AAGCAGTCGTGGATGCCTTC 60.675 55.000 0.00 0.00 43.60 3.46
16 17 0.957395 CAAGCAGTCGTGGATGCCTT 60.957 55.000 0.00 0.00 43.60 4.35
17 18 1.376424 CAAGCAGTCGTGGATGCCT 60.376 57.895 0.00 0.00 43.60 4.75
18 19 0.745845 ATCAAGCAGTCGTGGATGCC 60.746 55.000 0.00 0.00 43.60 4.40
19 20 0.376152 CATCAAGCAGTCGTGGATGC 59.624 55.000 0.00 0.00 42.87 3.91
20 21 2.014335 TCATCAAGCAGTCGTGGATG 57.986 50.000 0.00 0.00 0.00 3.51
21 22 2.768253 TTCATCAAGCAGTCGTGGAT 57.232 45.000 0.00 0.00 0.00 3.41
22 23 2.349590 CATTCATCAAGCAGTCGTGGA 58.650 47.619 0.00 0.00 0.00 4.02
23 24 1.202110 GCATTCATCAAGCAGTCGTGG 60.202 52.381 0.00 0.00 0.00 4.94
24 25 1.465777 TGCATTCATCAAGCAGTCGTG 59.534 47.619 0.00 0.00 33.75 4.35
25 26 1.466167 GTGCATTCATCAAGCAGTCGT 59.534 47.619 0.00 0.00 39.21 4.34
26 27 1.202110 GGTGCATTCATCAAGCAGTCG 60.202 52.381 0.00 0.00 39.21 4.18
27 28 1.202110 CGGTGCATTCATCAAGCAGTC 60.202 52.381 0.00 0.00 39.21 3.51
28 29 0.806868 CGGTGCATTCATCAAGCAGT 59.193 50.000 0.00 0.00 39.21 4.40
29 30 0.806868 ACGGTGCATTCATCAAGCAG 59.193 50.000 0.00 0.00 39.21 4.24
30 31 0.804364 GACGGTGCATTCATCAAGCA 59.196 50.000 0.00 0.00 35.63 3.91
31 32 0.247814 CGACGGTGCATTCATCAAGC 60.248 55.000 0.00 0.00 0.00 4.01
32 33 1.358877 TCGACGGTGCATTCATCAAG 58.641 50.000 0.00 0.00 0.00 3.02
33 34 2.022764 ATCGACGGTGCATTCATCAA 57.977 45.000 0.00 0.00 0.00 2.57
34 35 1.665169 CAATCGACGGTGCATTCATCA 59.335 47.619 0.00 0.00 0.00 3.07
35 36 1.003545 CCAATCGACGGTGCATTCATC 60.004 52.381 0.00 0.00 0.00 2.92
36 37 1.016627 CCAATCGACGGTGCATTCAT 58.983 50.000 0.00 0.00 0.00 2.57
37 38 0.321210 ACCAATCGACGGTGCATTCA 60.321 50.000 7.54 0.00 34.69 2.57
38 39 0.096976 CACCAATCGACGGTGCATTC 59.903 55.000 19.74 0.00 46.94 2.67
39 40 2.170738 CACCAATCGACGGTGCATT 58.829 52.632 19.74 0.00 46.94 3.56
40 41 3.889227 CACCAATCGACGGTGCAT 58.111 55.556 19.74 0.00 46.94 3.96
44 45 1.374252 GACAGCACCAATCGACGGT 60.374 57.895 2.47 2.47 37.16 4.83
45 46 2.100631 GGACAGCACCAATCGACGG 61.101 63.158 1.12 1.12 0.00 4.79
46 47 2.444624 CGGACAGCACCAATCGACG 61.445 63.158 0.00 0.00 0.00 5.12
47 48 0.460284 ATCGGACAGCACCAATCGAC 60.460 55.000 0.00 0.00 0.00 4.20
48 49 0.460109 CATCGGACAGCACCAATCGA 60.460 55.000 0.00 0.00 0.00 3.59
49 50 0.740868 ACATCGGACAGCACCAATCG 60.741 55.000 0.00 0.00 0.00 3.34
50 51 0.729116 CACATCGGACAGCACCAATC 59.271 55.000 0.00 0.00 0.00 2.67
51 52 0.036732 ACACATCGGACAGCACCAAT 59.963 50.000 0.00 0.00 0.00 3.16
52 53 0.179032 AACACATCGGACAGCACCAA 60.179 50.000 0.00 0.00 0.00 3.67
53 54 0.884259 CAACACATCGGACAGCACCA 60.884 55.000 0.00 0.00 0.00 4.17
54 55 1.577328 CCAACACATCGGACAGCACC 61.577 60.000 0.00 0.00 0.00 5.01
55 56 0.884704 ACCAACACATCGGACAGCAC 60.885 55.000 0.00 0.00 0.00 4.40
56 57 0.602638 GACCAACACATCGGACAGCA 60.603 55.000 0.00 0.00 0.00 4.41
57 58 0.320771 AGACCAACACATCGGACAGC 60.321 55.000 0.00 0.00 0.00 4.40
58 59 3.190079 CATAGACCAACACATCGGACAG 58.810 50.000 0.00 0.00 0.00 3.51
59 60 2.565391 ACATAGACCAACACATCGGACA 59.435 45.455 0.00 0.00 0.00 4.02
60 61 3.247006 ACATAGACCAACACATCGGAC 57.753 47.619 0.00 0.00 0.00 4.79
61 62 5.105106 ACAATACATAGACCAACACATCGGA 60.105 40.000 0.00 0.00 0.00 4.55
62 63 5.116180 ACAATACATAGACCAACACATCGG 58.884 41.667 0.00 0.00 0.00 4.18
63 64 6.662414 AACAATACATAGACCAACACATCG 57.338 37.500 0.00 0.00 0.00 3.84
86 87 4.440250 CCACATCACAAACGTACCCAAAAA 60.440 41.667 0.00 0.00 0.00 1.94
87 88 3.066900 CCACATCACAAACGTACCCAAAA 59.933 43.478 0.00 0.00 0.00 2.44
88 89 2.619177 CCACATCACAAACGTACCCAAA 59.381 45.455 0.00 0.00 0.00 3.28
89 90 2.222886 CCACATCACAAACGTACCCAA 58.777 47.619 0.00 0.00 0.00 4.12
90 91 1.141254 ACCACATCACAAACGTACCCA 59.859 47.619 0.00 0.00 0.00 4.51
91 92 1.533731 CACCACATCACAAACGTACCC 59.466 52.381 0.00 0.00 0.00 3.69
92 93 2.485903 TCACCACATCACAAACGTACC 58.514 47.619 0.00 0.00 0.00 3.34
93 94 3.124636 GGATCACCACATCACAAACGTAC 59.875 47.826 0.00 0.00 35.97 3.67
94 95 3.244249 TGGATCACCACATCACAAACGTA 60.244 43.478 0.00 0.00 41.77 3.57
95 96 2.151202 GGATCACCACATCACAAACGT 58.849 47.619 0.00 0.00 35.97 3.99
96 97 2.150390 TGGATCACCACATCACAAACG 58.850 47.619 0.00 0.00 41.77 3.60
108 109 1.153168 CCCCGACACATGGATCACC 60.153 63.158 0.00 0.00 0.00 4.02
109 110 1.153168 CCCCCGACACATGGATCAC 60.153 63.158 0.00 0.00 0.00 3.06
110 111 1.204786 AACCCCCGACACATGGATCA 61.205 55.000 0.00 0.00 0.00 2.92
111 112 0.034477 AAACCCCCGACACATGGATC 60.034 55.000 0.00 0.00 0.00 3.36
112 113 0.323360 CAAACCCCCGACACATGGAT 60.323 55.000 0.00 0.00 0.00 3.41
113 114 1.074072 CAAACCCCCGACACATGGA 59.926 57.895 0.00 0.00 0.00 3.41
114 115 1.228429 ACAAACCCCCGACACATGG 60.228 57.895 0.00 0.00 0.00 3.66
115 116 0.536233 TCACAAACCCCCGACACATG 60.536 55.000 0.00 0.00 0.00 3.21
116 117 0.404040 ATCACAAACCCCCGACACAT 59.596 50.000 0.00 0.00 0.00 3.21
117 118 0.183971 AATCACAAACCCCCGACACA 59.816 50.000 0.00 0.00 0.00 3.72
118 119 0.596082 CAATCACAAACCCCCGACAC 59.404 55.000 0.00 0.00 0.00 3.67
119 120 0.183971 ACAATCACAAACCCCCGACA 59.816 50.000 0.00 0.00 0.00 4.35
120 121 2.081462 CTACAATCACAAACCCCCGAC 58.919 52.381 0.00 0.00 0.00 4.79
121 122 1.612199 GCTACAATCACAAACCCCCGA 60.612 52.381 0.00 0.00 0.00 5.14
122 123 0.808755 GCTACAATCACAAACCCCCG 59.191 55.000 0.00 0.00 0.00 5.73
123 124 1.917872 TGCTACAATCACAAACCCCC 58.082 50.000 0.00 0.00 0.00 5.40
124 125 2.825532 ACATGCTACAATCACAAACCCC 59.174 45.455 0.00 0.00 0.00 4.95
125 126 4.485163 GAACATGCTACAATCACAAACCC 58.515 43.478 0.00 0.00 0.00 4.11
126 127 4.022416 TGGAACATGCTACAATCACAAACC 60.022 41.667 0.00 0.00 0.00 3.27
127 128 5.119931 TGGAACATGCTACAATCACAAAC 57.880 39.130 0.00 0.00 0.00 2.93
128 129 5.534278 TCTTGGAACATGCTACAATCACAAA 59.466 36.000 0.00 0.00 39.30 2.83
129 130 5.069318 TCTTGGAACATGCTACAATCACAA 58.931 37.500 0.00 0.00 39.30 3.33
130 131 4.650734 TCTTGGAACATGCTACAATCACA 58.349 39.130 0.00 0.00 39.30 3.58
131 132 5.824904 ATCTTGGAACATGCTACAATCAC 57.175 39.130 0.00 0.00 39.30 3.06
132 133 7.828717 TCTTAATCTTGGAACATGCTACAATCA 59.171 33.333 0.00 0.00 39.30 2.57
133 134 8.213518 TCTTAATCTTGGAACATGCTACAATC 57.786 34.615 0.00 0.00 39.30 2.67
134 135 8.757982 ATCTTAATCTTGGAACATGCTACAAT 57.242 30.769 0.00 0.00 39.30 2.71
135 136 9.109393 GTATCTTAATCTTGGAACATGCTACAA 57.891 33.333 0.00 0.00 39.30 2.41
136 137 8.264347 TGTATCTTAATCTTGGAACATGCTACA 58.736 33.333 0.00 0.00 39.30 2.74
137 138 8.662781 TGTATCTTAATCTTGGAACATGCTAC 57.337 34.615 0.00 0.00 39.30 3.58
138 139 9.851686 AATGTATCTTAATCTTGGAACATGCTA 57.148 29.630 0.00 0.00 39.30 3.49
139 140 8.627403 CAATGTATCTTAATCTTGGAACATGCT 58.373 33.333 0.00 0.00 39.30 3.79
140 141 8.623903 TCAATGTATCTTAATCTTGGAACATGC 58.376 33.333 0.00 0.00 39.30 4.06
151 152 9.875675 GCACTCTCAATTCAATGTATCTTAATC 57.124 33.333 0.00 0.00 0.00 1.75
152 153 9.399797 TGCACTCTCAATTCAATGTATCTTAAT 57.600 29.630 0.00 0.00 0.00 1.40
153 154 8.791327 TGCACTCTCAATTCAATGTATCTTAA 57.209 30.769 0.00 0.00 0.00 1.85
154 155 8.969260 ATGCACTCTCAATTCAATGTATCTTA 57.031 30.769 0.00 0.00 0.00 2.10
155 156 7.876936 ATGCACTCTCAATTCAATGTATCTT 57.123 32.000 0.00 0.00 0.00 2.40
156 157 7.876936 AATGCACTCTCAATTCAATGTATCT 57.123 32.000 0.00 0.00 0.00 1.98
157 158 8.922058 AAAATGCACTCTCAATTCAATGTATC 57.078 30.769 0.00 0.00 0.00 2.24
181 182 7.554118 TGGTAAGCAATCCAAACAATTCAAAAA 59.446 29.630 0.00 0.00 0.00 1.94
182 183 7.011857 GTGGTAAGCAATCCAAACAATTCAAAA 59.988 33.333 0.00 0.00 35.38 2.44
183 184 6.481644 GTGGTAAGCAATCCAAACAATTCAAA 59.518 34.615 0.00 0.00 35.38 2.69
184 185 5.988561 GTGGTAAGCAATCCAAACAATTCAA 59.011 36.000 0.00 0.00 35.38 2.69
185 186 5.069648 TGTGGTAAGCAATCCAAACAATTCA 59.930 36.000 0.00 0.00 35.38 2.57
186 187 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
187 188 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
188 189 5.011943 ACATGTGGTAAGCAATCCAAACAAT 59.988 36.000 0.00 0.00 35.38 2.71
189 190 4.343526 ACATGTGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 35.38 2.83
190 191 3.894427 ACATGTGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 35.38 2.83
191 192 4.519540 ACATGTGGTAAGCAATCCAAAC 57.480 40.909 0.00 0.00 35.38 2.93
192 193 5.948758 TGATACATGTGGTAAGCAATCCAAA 59.051 36.000 9.11 0.00 35.14 3.28
193 194 5.356751 GTGATACATGTGGTAAGCAATCCAA 59.643 40.000 9.11 0.00 35.14 3.53
194 195 4.881273 GTGATACATGTGGTAAGCAATCCA 59.119 41.667 9.11 0.00 35.14 3.41
195 196 4.024893 CGTGATACATGTGGTAAGCAATCC 60.025 45.833 9.11 0.00 35.14 3.01
196 197 4.570772 ACGTGATACATGTGGTAAGCAATC 59.429 41.667 9.11 1.17 35.14 2.67
197 198 4.513442 ACGTGATACATGTGGTAAGCAAT 58.487 39.130 9.11 0.00 35.14 3.56
198 199 3.932822 ACGTGATACATGTGGTAAGCAA 58.067 40.909 9.11 0.00 35.14 3.91
199 200 3.603158 ACGTGATACATGTGGTAAGCA 57.397 42.857 9.11 0.00 35.14 3.91
200 201 3.063452 CCAACGTGATACATGTGGTAAGC 59.937 47.826 9.11 0.00 33.54 3.09
201 202 4.250464 ACCAACGTGATACATGTGGTAAG 58.750 43.478 9.11 0.00 35.07 2.34
202 203 4.274602 ACCAACGTGATACATGTGGTAA 57.725 40.909 9.11 0.00 35.07 2.85
203 204 3.965379 ACCAACGTGATACATGTGGTA 57.035 42.857 9.11 0.00 35.07 3.25
204 205 2.851263 ACCAACGTGATACATGTGGT 57.149 45.000 9.11 1.11 33.54 4.16
205 206 4.438148 TCATACCAACGTGATACATGTGG 58.562 43.478 9.11 0.38 33.54 4.17
206 207 6.603237 ATTCATACCAACGTGATACATGTG 57.397 37.500 9.11 0.00 33.54 3.21
207 208 6.821160 TCAATTCATACCAACGTGATACATGT 59.179 34.615 2.69 2.69 34.83 3.21
208 209 7.125755 GTCAATTCATACCAACGTGATACATG 58.874 38.462 0.00 0.00 0.00 3.21
209 210 6.821160 TGTCAATTCATACCAACGTGATACAT 59.179 34.615 0.00 0.00 0.00 2.29
210 211 6.166982 TGTCAATTCATACCAACGTGATACA 58.833 36.000 0.00 0.00 0.00 2.29
211 212 6.312918 ACTGTCAATTCATACCAACGTGATAC 59.687 38.462 0.00 0.00 0.00 2.24
212 213 6.312672 CACTGTCAATTCATACCAACGTGATA 59.687 38.462 0.00 0.00 0.00 2.15
213 214 5.122239 CACTGTCAATTCATACCAACGTGAT 59.878 40.000 0.00 0.00 0.00 3.06
214 215 4.450757 CACTGTCAATTCATACCAACGTGA 59.549 41.667 0.00 0.00 0.00 4.35
215 216 4.711721 CACTGTCAATTCATACCAACGTG 58.288 43.478 0.00 0.00 0.00 4.49
216 217 3.188460 GCACTGTCAATTCATACCAACGT 59.812 43.478 0.00 0.00 0.00 3.99
217 218 3.426159 GGCACTGTCAATTCATACCAACG 60.426 47.826 0.00 0.00 0.00 4.10
218 219 3.119495 GGGCACTGTCAATTCATACCAAC 60.119 47.826 0.00 0.00 0.00 3.77
219 220 3.088532 GGGCACTGTCAATTCATACCAA 58.911 45.455 0.00 0.00 0.00 3.67
220 221 2.308570 AGGGCACTGTCAATTCATACCA 59.691 45.455 0.00 0.00 0.00 3.25
221 222 3.004752 AGGGCACTGTCAATTCATACC 57.995 47.619 0.00 0.00 0.00 2.73
222 223 5.428253 TCTTAGGGCACTGTCAATTCATAC 58.572 41.667 0.00 0.00 0.00 2.39
223 224 5.692115 TCTTAGGGCACTGTCAATTCATA 57.308 39.130 0.00 0.00 0.00 2.15
224 225 4.574674 TCTTAGGGCACTGTCAATTCAT 57.425 40.909 0.00 0.00 0.00 2.57
225 226 4.365514 TTCTTAGGGCACTGTCAATTCA 57.634 40.909 0.00 0.00 0.00 2.57
233 234 5.180868 GCATTCTCATATTCTTAGGGCACTG 59.819 44.000 0.00 0.00 0.00 3.66
250 251 4.996788 ACCCAATCAATTCTGCATTCTC 57.003 40.909 0.00 0.00 0.00 2.87
251 252 7.427989 AAATACCCAATCAATTCTGCATTCT 57.572 32.000 0.00 0.00 0.00 2.40
259 260 7.039011 GGGGAATCCTAAATACCCAATCAATTC 60.039 40.741 0.00 0.00 42.03 2.17
264 265 5.333566 TGGGGAATCCTAAATACCCAATC 57.666 43.478 0.00 0.00 44.65 2.67
269 270 5.362717 CCAACTTTGGGGAATCCTAAATACC 59.637 44.000 0.00 0.00 44.70 2.73
270 271 6.465439 CCAACTTTGGGGAATCCTAAATAC 57.535 41.667 0.00 0.00 44.70 1.89
299 300 5.622770 AAAGTTTGGTAGCTAATCAACCG 57.377 39.130 9.49 0.00 35.98 4.44
361 362 9.695155 AGTGTATACCAAAATTAAGGCAATACT 57.305 29.630 0.00 6.62 32.46 2.12
451 452 9.799106 TTCAGAAGATCAAGTCCTTATCTTTTT 57.201 29.630 0.00 0.00 39.46 1.94
460 461 4.680172 CGATGCTTCAGAAGATCAAGTCCT 60.680 45.833 14.86 0.00 0.00 3.85
482 483 4.794246 GTCTAGAATCGGAAAGACTTGACG 59.206 45.833 0.00 5.66 36.32 4.35
507 508 2.186903 CCATACGCCGACCTGCTT 59.813 61.111 0.00 0.00 0.00 3.91
526 527 5.447413 GGGCTTTAATCTTCGCAACTAAGTC 60.447 44.000 0.00 0.00 0.00 3.01
546 547 7.403675 AATCTTCCTGATAAGCATGTGGGCT 62.404 44.000 0.00 0.00 39.22 5.19
547 548 1.952296 CTTCCTGATAAGCATGTGGGC 59.048 52.381 0.00 0.00 0.00 5.36
549 550 6.528321 TCTAATCTTCCTGATAAGCATGTGG 58.472 40.000 0.00 0.00 34.45 4.17
550 551 6.147492 GCTCTAATCTTCCTGATAAGCATGTG 59.853 42.308 0.00 0.00 36.34 3.21
551 552 6.183361 TGCTCTAATCTTCCTGATAAGCATGT 60.183 38.462 0.00 0.00 38.87 3.21
553 554 6.430962 TGCTCTAATCTTCCTGATAAGCAT 57.569 37.500 0.00 0.00 38.87 3.79
554 555 5.876651 TGCTCTAATCTTCCTGATAAGCA 57.123 39.130 0.00 0.00 40.16 3.91
555 556 7.559590 TTTTGCTCTAATCTTCCTGATAAGC 57.440 36.000 0.00 0.00 36.60 3.09
557 558 9.784531 CCTATTTTGCTCTAATCTTCCTGATAA 57.215 33.333 0.00 0.00 34.45 1.75
558 559 9.159254 TCCTATTTTGCTCTAATCTTCCTGATA 57.841 33.333 0.00 0.00 34.45 2.15
560 561 7.437713 TCCTATTTTGCTCTAATCTTCCTGA 57.562 36.000 0.00 0.00 0.00 3.86
562 563 8.100164 GCTATCCTATTTTGCTCTAATCTTCCT 58.900 37.037 0.00 0.00 0.00 3.36
563 564 7.880195 TGCTATCCTATTTTGCTCTAATCTTCC 59.120 37.037 0.00 0.00 0.00 3.46
564 565 8.839310 TGCTATCCTATTTTGCTCTAATCTTC 57.161 34.615 0.00 0.00 0.00 2.87
565 566 8.654997 TCTGCTATCCTATTTTGCTCTAATCTT 58.345 33.333 0.00 0.00 0.00 2.40
566 567 8.200024 TCTGCTATCCTATTTTGCTCTAATCT 57.800 34.615 0.00 0.00 0.00 2.40
567 568 9.447157 AATCTGCTATCCTATTTTGCTCTAATC 57.553 33.333 0.00 0.00 0.00 1.75
569 570 8.213679 ACAATCTGCTATCCTATTTTGCTCTAA 58.786 33.333 0.00 0.00 0.00 2.10
570 571 7.739825 ACAATCTGCTATCCTATTTTGCTCTA 58.260 34.615 0.00 0.00 0.00 2.43
584 585 8.917088 ACTTTATAATGCCAAACAATCTGCTAT 58.083 29.630 0.00 0.00 0.00 2.97
597 598 4.578516 CCGGTCATTGACTTTATAATGCCA 59.421 41.667 16.02 0.00 34.96 4.92
607 608 1.671054 CGTGGCCGGTCATTGACTT 60.671 57.895 14.23 0.00 32.47 3.01
608 609 2.047274 CGTGGCCGGTCATTGACT 60.047 61.111 14.23 0.00 32.47 3.41
609 610 3.799755 GCGTGGCCGGTCATTGAC 61.800 66.667 14.23 8.34 33.68 3.18
621 622 3.726517 CTTCACCAAGCCGCGTGG 61.727 66.667 22.12 22.12 42.28 4.94
622 623 3.726517 CCTTCACCAAGCCGCGTG 61.727 66.667 4.92 0.00 0.00 5.34
623 624 3.936203 TCCTTCACCAAGCCGCGT 61.936 61.111 4.92 0.00 0.00 6.01
624 625 3.423154 GTCCTTCACCAAGCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
625 626 3.056328 GGTCCTTCACCAAGCCGC 61.056 66.667 0.00 0.00 45.98 6.53
713 725 3.435327 CGTGCTACTTATGGCTTGTTTCA 59.565 43.478 0.00 0.00 32.44 2.69
714 726 3.682858 TCGTGCTACTTATGGCTTGTTTC 59.317 43.478 0.00 0.00 32.44 2.78
715 727 3.670625 TCGTGCTACTTATGGCTTGTTT 58.329 40.909 0.00 0.00 32.44 2.83
716 728 3.328382 TCGTGCTACTTATGGCTTGTT 57.672 42.857 0.00 0.00 32.44 2.83
717 729 3.543680 ATCGTGCTACTTATGGCTTGT 57.456 42.857 0.00 0.00 32.44 3.16
718 730 4.882671 AAATCGTGCTACTTATGGCTTG 57.117 40.909 0.00 0.00 32.44 4.01
767 789 0.181587 TCAACCGGAAGACAAGGCAA 59.818 50.000 9.46 0.00 0.00 4.52
773 795 0.181587 TTTGGCTCAACCGGAAGACA 59.818 50.000 9.46 8.25 43.94 3.41
803 825 3.807622 TCAAGTCAGCTCGAACGAAAAAT 59.192 39.130 0.00 0.00 0.00 1.82
808 840 0.952280 ACTCAAGTCAGCTCGAACGA 59.048 50.000 0.00 0.00 0.00 3.85
907 941 2.959707 ACGGAGAGAGGTGAATATGTCC 59.040 50.000 0.00 0.00 0.00 4.02
908 942 3.632604 TGACGGAGAGAGGTGAATATGTC 59.367 47.826 0.00 0.00 0.00 3.06
909 943 3.632333 TGACGGAGAGAGGTGAATATGT 58.368 45.455 0.00 0.00 0.00 2.29
910 944 4.098654 ACTTGACGGAGAGAGGTGAATATG 59.901 45.833 0.00 0.00 0.00 1.78
911 945 4.282496 ACTTGACGGAGAGAGGTGAATAT 58.718 43.478 0.00 0.00 0.00 1.28
912 946 3.698289 ACTTGACGGAGAGAGGTGAATA 58.302 45.455 0.00 0.00 0.00 1.75
913 947 2.530701 ACTTGACGGAGAGAGGTGAAT 58.469 47.619 0.00 0.00 0.00 2.57
914 948 1.996798 ACTTGACGGAGAGAGGTGAA 58.003 50.000 0.00 0.00 0.00 3.18
915 949 2.305052 TCTACTTGACGGAGAGAGGTGA 59.695 50.000 0.00 0.00 0.00 4.02
916 950 2.712709 TCTACTTGACGGAGAGAGGTG 58.287 52.381 0.00 0.00 0.00 4.00
917 951 3.244981 ACTTCTACTTGACGGAGAGAGGT 60.245 47.826 0.00 0.00 0.00 3.85
918 952 3.127895 CACTTCTACTTGACGGAGAGAGG 59.872 52.174 0.00 0.00 0.00 3.69
919 953 3.127895 CCACTTCTACTTGACGGAGAGAG 59.872 52.174 0.00 0.00 0.00 3.20
963 1018 4.857037 GTGTGTCGCTTCTTGTTTTCTTTT 59.143 37.500 0.00 0.00 0.00 2.27
964 1019 4.083003 TGTGTGTCGCTTCTTGTTTTCTTT 60.083 37.500 0.00 0.00 0.00 2.52
967 1022 3.098636 GTGTGTGTCGCTTCTTGTTTTC 58.901 45.455 0.00 0.00 0.00 2.29
972 1027 0.583438 CCAGTGTGTGTCGCTTCTTG 59.417 55.000 0.00 0.00 34.33 3.02
973 1028 0.178068 ACCAGTGTGTGTCGCTTCTT 59.822 50.000 0.00 0.00 34.33 2.52
975 1030 1.498865 CCACCAGTGTGTGTCGCTTC 61.499 60.000 9.85 0.00 41.09 3.86
976 1031 1.523711 CCACCAGTGTGTGTCGCTT 60.524 57.895 9.85 0.00 41.09 4.68
978 1033 0.531090 TAACCACCAGTGTGTGTCGC 60.531 55.000 9.85 0.00 41.09 5.19
979 1034 1.214367 GTAACCACCAGTGTGTGTCG 58.786 55.000 9.85 0.81 41.09 4.35
980 1035 1.589803 GGTAACCACCAGTGTGTGTC 58.410 55.000 9.85 0.78 45.04 3.67
981 1036 3.792712 GGTAACCACCAGTGTGTGT 57.207 52.632 9.85 0.00 45.04 3.72
1035 1093 4.647399 TGGGAAAACTAACCTTCAAACAGG 59.353 41.667 0.00 0.00 40.23 4.00
1072 1130 4.261994 CCTGGTGTTGGAAATACAAACTGG 60.262 45.833 0.00 0.00 39.98 4.00
1118 1176 7.972832 TCGGTGAAAACTTGAAACATATAGT 57.027 32.000 0.00 0.00 0.00 2.12
1119 1177 9.277565 CAATCGGTGAAAACTTGAAACATATAG 57.722 33.333 0.00 0.00 0.00 1.31
1120 1178 7.753132 GCAATCGGTGAAAACTTGAAACATATA 59.247 33.333 0.00 0.00 0.00 0.86
1121 1179 6.586082 GCAATCGGTGAAAACTTGAAACATAT 59.414 34.615 0.00 0.00 0.00 1.78
1122 1180 5.918011 GCAATCGGTGAAAACTTGAAACATA 59.082 36.000 0.00 0.00 0.00 2.29
1123 1181 4.744631 GCAATCGGTGAAAACTTGAAACAT 59.255 37.500 0.00 0.00 0.00 2.71
1136 1194 3.669536 TCTTACAATGTGCAATCGGTGA 58.330 40.909 0.00 0.00 0.00 4.02
1169 1227 0.716108 GGAAACAGAGATGCGTCACG 59.284 55.000 8.99 0.00 0.00 4.35
1172 1230 0.744771 GGGGGAAACAGAGATGCGTC 60.745 60.000 0.00 0.00 0.00 5.19
1173 1231 1.201429 AGGGGGAAACAGAGATGCGT 61.201 55.000 0.00 0.00 0.00 5.24
1174 1232 0.035056 AAGGGGGAAACAGAGATGCG 60.035 55.000 0.00 0.00 0.00 4.73
1175 1233 1.467920 CAAGGGGGAAACAGAGATGC 58.532 55.000 0.00 0.00 0.00 3.91
1176 1234 1.272092 TGCAAGGGGGAAACAGAGATG 60.272 52.381 0.00 0.00 0.00 2.90
1177 1235 1.075601 TGCAAGGGGGAAACAGAGAT 58.924 50.000 0.00 0.00 0.00 2.75
1178 1236 0.110486 GTGCAAGGGGGAAACAGAGA 59.890 55.000 0.00 0.00 0.00 3.10
1179 1237 0.178992 TGTGCAAGGGGGAAACAGAG 60.179 55.000 0.00 0.00 0.00 3.35
1180 1238 0.482446 ATGTGCAAGGGGGAAACAGA 59.518 50.000 0.00 0.00 0.00 3.41
1181 1239 1.001181 CAATGTGCAAGGGGGAAACAG 59.999 52.381 0.00 0.00 0.00 3.16
1182 1240 1.047002 CAATGTGCAAGGGGGAAACA 58.953 50.000 0.00 0.00 0.00 2.83
1183 1241 1.047801 ACAATGTGCAAGGGGGAAAC 58.952 50.000 0.00 0.00 0.00 2.78
1184 1242 2.524306 CTACAATGTGCAAGGGGGAAA 58.476 47.619 0.00 0.00 0.00 3.13
1185 1243 1.272425 CCTACAATGTGCAAGGGGGAA 60.272 52.381 0.00 0.00 0.00 3.97
1186 1244 0.331278 CCTACAATGTGCAAGGGGGA 59.669 55.000 0.00 0.00 0.00 4.81
1187 1245 0.684153 CCCTACAATGTGCAAGGGGG 60.684 60.000 11.11 2.04 39.24 5.40
1188 1246 0.039618 ACCCTACAATGTGCAAGGGG 59.960 55.000 20.46 13.89 44.25 4.79
1189 1247 1.176527 CACCCTACAATGTGCAAGGG 58.823 55.000 16.17 16.17 45.02 3.95
1190 1248 1.176527 CCACCCTACAATGTGCAAGG 58.823 55.000 0.00 0.00 0.00 3.61
1191 1249 2.198827 TCCACCCTACAATGTGCAAG 57.801 50.000 0.00 0.00 0.00 4.01
1192 1250 2.445427 CATCCACCCTACAATGTGCAA 58.555 47.619 0.00 0.00 0.00 4.08
1193 1251 1.340893 CCATCCACCCTACAATGTGCA 60.341 52.381 0.00 0.00 0.00 4.57
1194 1252 1.340991 ACCATCCACCCTACAATGTGC 60.341 52.381 0.00 0.00 0.00 4.57
1195 1253 2.643551 GACCATCCACCCTACAATGTG 58.356 52.381 0.00 0.00 0.00 3.21
1196 1254 1.564348 GGACCATCCACCCTACAATGT 59.436 52.381 0.00 0.00 36.28 2.71
1197 1255 1.563879 TGGACCATCCACCCTACAATG 59.436 52.381 0.00 0.00 42.67 2.82
1198 1256 1.846439 CTGGACCATCCACCCTACAAT 59.154 52.381 0.00 0.00 42.67 2.71
1199 1257 1.285280 CTGGACCATCCACCCTACAA 58.715 55.000 0.00 0.00 42.67 2.41
1268 1326 7.343833 ATCTGATCCAGTAATTGGCAGAAAAAT 59.656 33.333 0.00 0.00 44.27 1.82
1269 1327 6.664816 ATCTGATCCAGTAATTGGCAGAAAAA 59.335 34.615 0.00 0.00 44.27 1.94
1270 1328 6.189859 ATCTGATCCAGTAATTGGCAGAAAA 58.810 36.000 0.00 0.00 44.27 2.29
1290 1348 9.784531 AGGAACACTAATCCAACAATATATCTG 57.215 33.333 0.00 0.00 39.55 2.90
1308 1386 5.869579 TGCAAGATAAGAAGAAGGAACACT 58.130 37.500 0.00 0.00 0.00 3.55
1339 2002 8.641541 ACTGGATAACAAGATGAAAACAACATT 58.358 29.630 0.00 0.00 0.00 2.71
1388 2305 0.676466 TGATGCCGCCTTTGTACAGG 60.676 55.000 0.00 0.00 36.95 4.00
1570 2487 1.946475 GAGGGAGTAGTGGTGGTCGC 61.946 65.000 0.00 0.00 0.00 5.19
1592 2509 5.165676 CAGTACGTATGCTTGAGTTTACCA 58.834 41.667 0.00 0.00 0.00 3.25
1648 2615 8.306680 TGAGCAACAAGAAAATAGTACAGTAC 57.693 34.615 2.05 2.05 0.00 2.73
1651 2618 7.747799 CACATGAGCAACAAGAAAATAGTACAG 59.252 37.037 0.00 0.00 0.00 2.74
1652 2619 7.584108 CACATGAGCAACAAGAAAATAGTACA 58.416 34.615 0.00 0.00 0.00 2.90
1653 2620 6.524586 GCACATGAGCAACAAGAAAATAGTAC 59.475 38.462 10.48 0.00 0.00 2.73
1655 2622 5.464168 GCACATGAGCAACAAGAAAATAGT 58.536 37.500 10.48 0.00 0.00 2.12
1876 2855 8.946085 TGAACAATTCCTGTGTAATCAATCTAC 58.054 33.333 0.00 0.00 38.67 2.59
1878 2857 8.299570 GTTGAACAATTCCTGTGTAATCAATCT 58.700 33.333 0.00 0.00 38.67 2.40
1881 2860 6.434596 CGTTGAACAATTCCTGTGTAATCAA 58.565 36.000 0.00 0.00 38.67 2.57
1892 2875 1.067821 TGGTTGGCGTTGAACAATTCC 59.932 47.619 0.00 0.00 0.00 3.01
1893 2876 2.500509 TGGTTGGCGTTGAACAATTC 57.499 45.000 0.00 0.00 0.00 2.17
1920 2903 9.804758 GTACATGCAAACTTAGTTAGAGATACT 57.195 33.333 0.00 0.00 0.00 2.12
1921 2904 9.582431 TGTACATGCAAACTTAGTTAGAGATAC 57.418 33.333 0.00 0.00 0.00 2.24
1922 2905 9.803315 CTGTACATGCAAACTTAGTTAGAGATA 57.197 33.333 0.00 0.00 0.00 1.98
1923 2906 7.766278 CCTGTACATGCAAACTTAGTTAGAGAT 59.234 37.037 0.00 0.00 0.00 2.75
1924 2907 7.097192 CCTGTACATGCAAACTTAGTTAGAGA 58.903 38.462 0.00 0.00 0.00 3.10
1925 2908 6.183360 GCCTGTACATGCAAACTTAGTTAGAG 60.183 42.308 17.08 0.00 0.00 2.43
1926 2909 5.642063 GCCTGTACATGCAAACTTAGTTAGA 59.358 40.000 17.08 0.00 0.00 2.10
1927 2910 5.163754 GGCCTGTACATGCAAACTTAGTTAG 60.164 44.000 22.26 0.00 0.00 2.34
1928 2911 4.698304 GGCCTGTACATGCAAACTTAGTTA 59.302 41.667 22.26 0.00 0.00 2.24
1929 2912 3.506067 GGCCTGTACATGCAAACTTAGTT 59.494 43.478 22.26 0.00 0.00 2.24
1930 2913 3.081804 GGCCTGTACATGCAAACTTAGT 58.918 45.455 22.26 0.00 0.00 2.24
1931 2914 2.095853 CGGCCTGTACATGCAAACTTAG 59.904 50.000 22.26 3.50 0.00 2.18
2780 3775 2.142761 TGAGCCAGATGGGGATCCG 61.143 63.158 5.45 0.00 42.69 4.18
2783 3778 2.446848 CGGTGAGCCAGATGGGGAT 61.447 63.158 0.12 0.00 37.04 3.85
3081 4076 3.952811 GGTGAGTCACCGTGAAGC 58.047 61.111 26.12 2.06 44.95 3.86
3302 4298 2.027561 CCCATCAAAGAGGTAACCGTCA 60.028 50.000 0.00 0.00 37.17 4.35
3305 4301 1.557832 TCCCCATCAAAGAGGTAACCG 59.442 52.381 0.00 0.00 37.17 4.44
3307 4303 4.262617 GTTCTCCCCATCAAAGAGGTAAC 58.737 47.826 0.00 0.00 0.00 2.50
3331 4327 0.172803 GACGCAACGGGTCATCTACT 59.827 55.000 6.33 0.00 43.51 2.57
3332 4328 0.804933 GGACGCAACGGGTCATCTAC 60.805 60.000 12.46 0.00 45.38 2.59
3350 4346 2.809665 GCAGTGGATCTCTATGCCAAGG 60.810 54.545 0.00 0.00 32.68 3.61
3351 4347 2.158856 TGCAGTGGATCTCTATGCCAAG 60.159 50.000 9.23 0.00 36.04 3.61
3364 4360 0.463654 AACTTTCGTGCTGCAGTGGA 60.464 50.000 16.64 7.47 0.00 4.02
3400 4396 5.588648 TGTTGCTTAACTTCTTAGTTGCAGT 59.411 36.000 0.00 0.00 44.22 4.40
3429 4425 3.424703 ACATTTGTTAGACATGCTGCCT 58.575 40.909 0.00 0.00 0.00 4.75
3455 4451 7.838079 TGTTCCTTTGGGGATGATTTATATG 57.162 36.000 0.00 0.00 44.66 1.78
3466 4462 3.011144 TCATGCTAATGTTCCTTTGGGGA 59.989 43.478 0.00 0.00 37.12 4.81
3471 4467 5.945784 TGCTAGTTCATGCTAATGTTCCTTT 59.054 36.000 0.00 0.00 35.15 3.11
3476 4472 7.452880 TCTTTTGCTAGTTCATGCTAATGTT 57.547 32.000 0.00 0.00 35.15 2.71
3502 4498 2.322081 CCCTGTTGTAACGCACGGG 61.322 63.158 0.00 0.00 0.00 5.28
3512 4508 8.478877 TGTGTGTTATTTATTTTTCCCTGTTGT 58.521 29.630 0.00 0.00 0.00 3.32
3517 4513 8.706322 AGAGTGTGTGTTATTTATTTTTCCCT 57.294 30.769 0.00 0.00 0.00 4.20
3526 4522 6.646240 GTCGGGTTAAGAGTGTGTGTTATTTA 59.354 38.462 0.00 0.00 0.00 1.40
3528 4524 4.992951 GTCGGGTTAAGAGTGTGTGTTATT 59.007 41.667 0.00 0.00 0.00 1.40
3538 4534 4.223032 AGTGATGATTGTCGGGTTAAGAGT 59.777 41.667 0.00 0.00 0.00 3.24
3559 4555 4.696479 ATTGTGGTCTTCACTCTTCAGT 57.304 40.909 0.00 0.00 46.20 3.41
3560 4556 5.788450 ACTATTGTGGTCTTCACTCTTCAG 58.212 41.667 0.00 0.00 46.20 3.02
3561 4557 5.808366 ACTATTGTGGTCTTCACTCTTCA 57.192 39.130 0.00 0.00 46.20 3.02
3562 4558 6.688578 TGTACTATTGTGGTCTTCACTCTTC 58.311 40.000 0.00 0.00 46.20 2.87
3563 4559 6.665992 TGTACTATTGTGGTCTTCACTCTT 57.334 37.500 0.00 0.00 46.20 2.85
3564 4560 6.665680 AGATGTACTATTGTGGTCTTCACTCT 59.334 38.462 0.00 0.00 46.20 3.24
3565 4561 6.868622 AGATGTACTATTGTGGTCTTCACTC 58.131 40.000 0.00 0.00 46.20 3.51
3569 4565 6.472686 AGGAGATGTACTATTGTGGTCTTC 57.527 41.667 0.00 0.00 0.00 2.87
3583 4579 7.332557 TGCCTCGTTAAAATAAAGGAGATGTA 58.667 34.615 7.64 0.00 41.63 2.29
3584 4580 6.177610 TGCCTCGTTAAAATAAAGGAGATGT 58.822 36.000 7.64 0.00 41.63 3.06
3601 4598 3.181497 GCAACACAAATATGATGCCTCGT 60.181 43.478 0.00 0.00 32.22 4.18
3614 4611 2.819608 GGAGGATAAGCTGCAACACAAA 59.180 45.455 1.02 0.00 0.00 2.83
3624 4621 2.022527 AGGGTGAGAAGGAGGATAAGCT 60.023 50.000 0.00 0.00 0.00 3.74
3659 4656 5.570973 CGTTTTGATTTGTGTGAACACTGAA 59.429 36.000 14.28 9.54 46.55 3.02
3669 4666 6.367422 ACATTCAAACACGTTTTGATTTGTGT 59.633 30.769 22.84 19.66 46.76 3.72
3676 4673 4.442375 ACCACATTCAAACACGTTTTGA 57.558 36.364 16.64 16.64 36.71 2.69
3693 4690 4.756502 AGAGACGCCTTAGAATTAACCAC 58.243 43.478 0.00 0.00 0.00 4.16
3702 4699 2.769663 AGAGAGAGAGAGACGCCTTAGA 59.230 50.000 0.00 0.00 0.00 2.10
4000 4997 5.631096 CGATAACTACACATGCATACCTCTG 59.369 44.000 0.00 0.00 0.00 3.35
4075 5073 1.660575 CTTTCGTATCGGCGGCGAT 60.661 57.895 41.93 41.93 34.52 4.58
4078 5076 0.722848 TTTTCTTTCGTATCGGCGGC 59.277 50.000 7.21 0.00 0.00 6.53
4085 5083 6.509039 GCGTACGATCCATTTTTCTTTCGTAT 60.509 38.462 21.65 0.00 42.03 3.06
4107 5105 8.148351 TGGAAGCAAACTTATAATCTATAGCGT 58.852 33.333 0.00 0.00 35.82 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.