Multiple sequence alignment - TraesCS1B01G124400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G124400 chr1B 100.000 7936 0 0 1 7936 151005267 150997332 0.000000e+00 14656.0
1 TraesCS1B01G124400 chr1B 86.957 782 94 6 3464 4244 502925987 502925213 0.000000e+00 872.0
2 TraesCS1B01G124400 chr1B 87.896 537 54 8 3466 4002 502845788 502845263 8.750000e-174 621.0
3 TraesCS1B01G124400 chr1B 87.384 539 54 7 3466 4002 502935880 502935354 2.450000e-169 606.0
4 TraesCS1B01G124400 chr1B 84.799 546 58 4 3466 4002 502949368 502948839 7.050000e-145 525.0
5 TraesCS1B01G124400 chr1D 94.646 5977 238 37 686 6625 100816084 100822015 0.000000e+00 9190.0
6 TraesCS1B01G124400 chr1D 91.057 738 22 11 6623 7345 100822066 100822774 0.000000e+00 957.0
7 TraesCS1B01G124400 chr1D 86.950 682 63 8 1 673 100807021 100807685 0.000000e+00 743.0
8 TraesCS1B01G124400 chr1D 88.082 537 54 5 3466 4002 376305165 376304639 5.230000e-176 628.0
9 TraesCS1B01G124400 chr1D 86.617 538 56 9 3466 4002 376323339 376322817 1.480000e-161 580.0
10 TraesCS1B01G124400 chr1D 86.278 532 63 5 3466 3997 376302110 376301589 3.210000e-158 569.0
11 TraesCS1B01G124400 chr1D 90.610 426 21 4 7381 7787 100823415 100823840 1.510000e-151 547.0
12 TraesCS1B01G124400 chr1D 91.071 56 4 1 816 871 318476894 318476840 3.070000e-09 75.0
13 TraesCS1B01G124400 chr1A 95.478 5285 181 19 1990 7244 104588101 104582845 0.000000e+00 8383.0
14 TraesCS1B01G124400 chr1A 90.225 757 48 9 979 1713 104590343 104589591 0.000000e+00 965.0
15 TraesCS1B01G124400 chr1A 86.630 718 91 3 3466 4182 475752913 475752200 0.000000e+00 789.0
16 TraesCS1B01G124400 chr1A 85.153 687 86 11 9 691 104597702 104597028 0.000000e+00 689.0
17 TraesCS1B01G124400 chr1A 85.634 536 66 2 3466 4001 475765695 475765171 3.240000e-153 553.0
18 TraesCS1B01G124400 chr1A 95.349 258 10 1 1742 1999 104589591 104589336 7.410000e-110 409.0
19 TraesCS1B01G124400 chr1A 94.862 253 13 0 7537 7789 104582306 104582054 5.770000e-106 396.0
20 TraesCS1B01G124400 chr1A 93.210 162 10 1 686 846 104591168 104591007 3.700000e-58 237.0
21 TraesCS1B01G124400 chr1A 94.286 105 5 1 7241 7345 104582796 104582693 8.240000e-35 159.0
22 TraesCS1B01G124400 chr1A 97.436 78 2 0 7381 7458 104582390 104582313 5.000000e-27 134.0
23 TraesCS1B01G124400 chr5D 77.588 763 137 23 2788 3539 538095730 538096469 1.580000e-116 431.0
24 TraesCS1B01G124400 chr5D 76.909 563 89 20 2985 3539 538097009 538096480 1.690000e-71 281.0
25 TraesCS1B01G124400 chr5B 77.361 773 134 30 2788 3538 678704297 678703544 3.420000e-113 420.0
26 TraesCS1B01G124400 chr5B 79.448 326 52 10 3228 3538 678998883 678999208 4.820000e-52 217.0
27 TraesCS1B01G124400 chr5B 77.481 262 46 8 3284 3538 678703265 678703520 2.310000e-30 145.0
28 TraesCS1B01G124400 chr5B 78.138 247 38 9 3307 3538 678573760 678574005 8.300000e-30 143.0
29 TraesCS1B01G124400 chr4A 77.083 768 133 32 2788 3538 632235380 632236121 3.450000e-108 403.0
30 TraesCS1B01G124400 chr4A 86.723 354 45 2 7436 7789 511134712 511134361 7.470000e-105 392.0
31 TraesCS1B01G124400 chr2D 89.231 65 5 2 809 872 567641314 567641377 6.600000e-11 80.5
32 TraesCS1B01G124400 chr7D 89.474 57 5 1 816 872 62282236 62282181 3.970000e-08 71.3
33 TraesCS1B01G124400 chr6B 89.286 56 4 2 809 863 655893713 655893767 1.430000e-07 69.4
34 TraesCS1B01G124400 chr2B 93.617 47 2 1 816 862 111667203 111667248 1.430000e-07 69.4
35 TraesCS1B01G124400 chr7A 87.500 56 5 2 809 863 668309966 668310020 6.650000e-06 63.9
36 TraesCS1B01G124400 chr3B 85.000 60 7 2 805 863 577379240 577379182 8.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G124400 chr1B 150997332 151005267 7935 True 14656.000000 14656 100.000000 1 7936 1 chr1B.!!$R1 7935
1 TraesCS1B01G124400 chr1B 502925213 502925987 774 True 872.000000 872 86.957000 3464 4244 1 chr1B.!!$R3 780
2 TraesCS1B01G124400 chr1B 502845263 502845788 525 True 621.000000 621 87.896000 3466 4002 1 chr1B.!!$R2 536
3 TraesCS1B01G124400 chr1B 502935354 502935880 526 True 606.000000 606 87.384000 3466 4002 1 chr1B.!!$R4 536
4 TraesCS1B01G124400 chr1B 502948839 502949368 529 True 525.000000 525 84.799000 3466 4002 1 chr1B.!!$R5 536
5 TraesCS1B01G124400 chr1D 100816084 100823840 7756 False 3564.666667 9190 92.104333 686 7787 3 chr1D.!!$F2 7101
6 TraesCS1B01G124400 chr1D 100807021 100807685 664 False 743.000000 743 86.950000 1 673 1 chr1D.!!$F1 672
7 TraesCS1B01G124400 chr1D 376301589 376305165 3576 True 598.500000 628 87.180000 3466 4002 2 chr1D.!!$R3 536
8 TraesCS1B01G124400 chr1D 376322817 376323339 522 True 580.000000 580 86.617000 3466 4002 1 chr1D.!!$R2 536
9 TraesCS1B01G124400 chr1A 104582054 104591168 9114 True 1526.142857 8383 94.406571 686 7789 7 chr1A.!!$R4 7103
10 TraesCS1B01G124400 chr1A 475752200 475752913 713 True 789.000000 789 86.630000 3466 4182 1 chr1A.!!$R2 716
11 TraesCS1B01G124400 chr1A 104597028 104597702 674 True 689.000000 689 85.153000 9 691 1 chr1A.!!$R1 682
12 TraesCS1B01G124400 chr1A 475765171 475765695 524 True 553.000000 553 85.634000 3466 4001 1 chr1A.!!$R3 535
13 TraesCS1B01G124400 chr5D 538095730 538096469 739 False 431.000000 431 77.588000 2788 3539 1 chr5D.!!$F1 751
14 TraesCS1B01G124400 chr5D 538096480 538097009 529 True 281.000000 281 76.909000 2985 3539 1 chr5D.!!$R1 554
15 TraesCS1B01G124400 chr5B 678703544 678704297 753 True 420.000000 420 77.361000 2788 3538 1 chr5B.!!$R1 750
16 TraesCS1B01G124400 chr4A 632235380 632236121 741 False 403.000000 403 77.083000 2788 3538 1 chr4A.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.108138 CATCAGGACGGTCTGGTTCC 60.108 60.0 8.23 0.00 35.58 3.62 F
419 422 0.179094 TTTCACACGCGTCAAGTCCT 60.179 50.0 9.86 0.00 0.00 3.85 F
1407 1968 0.179081 ATCGGGCGGAGAAGTTTAGC 60.179 55.0 0.20 0.00 0.00 3.09 F
1928 2511 0.890683 GGCAAAACCATGGTGGAGAG 59.109 55.0 20.60 8.36 40.96 3.20 F
2093 3924 1.391157 AAGCCTGCAAAGAAACGGCA 61.391 50.0 12.78 0.00 43.07 5.69 F
3305 5160 1.896220 TGGAACAGATCAAGTGTGGC 58.104 50.0 0.00 0.00 0.00 5.01 F
4306 9258 0.038801 CTCTCGTGTGCTTGCTCTGA 60.039 55.0 0.00 0.00 0.00 3.27 F
5257 10217 0.656259 CTTCACGATCTGCATGCCAG 59.344 55.0 16.68 12.67 43.17 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1869 0.037590 TAGTTTGATGGGTGCCGCTT 59.962 50.000 0.00 0.00 0.00 4.68 R
1489 2052 0.393537 GTCATCCCTGCACCAAGAGG 60.394 60.000 0.00 0.00 42.21 3.69 R
2437 4271 1.286570 CACACATGCACGCACCATT 59.713 52.632 0.00 0.00 0.00 3.16 R
3462 5343 0.179037 GGCAGCAGATGAGGCACATA 60.179 55.000 0.00 0.00 39.56 2.29 R
3885 8834 2.233186 AGCCTTCCGTACTGTCTTTACC 59.767 50.000 0.00 0.00 0.00 2.85 R
4808 9762 0.240945 GACCCCTGCAACATCAAACG 59.759 55.000 0.00 0.00 0.00 3.60 R
5688 10648 0.316522 AGCATCTGTAGCATCGCGAT 59.683 50.000 17.62 17.62 0.00 4.58 R
6944 11969 0.179078 GAGAGCAGTCTGATGGCAGG 60.179 60.000 3.32 0.00 42.53 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.108138 CATCAGGACGGTCTGGTTCC 60.108 60.000 8.23 0.00 35.58 3.62
34 35 0.825840 CTGGTTCCGGAAAAGGCCAA 60.826 55.000 20.79 6.07 0.00 4.52
35 36 0.825840 TGGTTCCGGAAAAGGCCAAG 60.826 55.000 20.79 0.00 0.00 3.61
65 66 7.038870 CCCCATATTCATTGCTTATTCCAATCA 60.039 37.037 0.00 0.00 30.90 2.57
74 75 6.040209 TGCTTATTCCAATCAGCAAAACAT 57.960 33.333 5.82 0.00 41.27 2.71
126 128 5.313712 TGATTTTCCTCCAAGTGACTTACC 58.686 41.667 0.00 0.00 0.00 2.85
135 137 2.154567 AGTGACTTACCTGCCGGATA 57.845 50.000 5.05 0.00 0.00 2.59
153 155 4.032900 CGGATACCATGCTAAATGCGTATC 59.967 45.833 13.16 13.16 46.63 2.24
292 294 6.212993 CCTCATCCTCATGGAGATTCAATCTA 59.787 42.308 0.00 0.00 46.91 1.98
306 308 8.430801 AGATTCAATCTACCAAGAAGATTTCG 57.569 34.615 0.00 0.00 40.81 3.46
308 310 7.596749 TTCAATCTACCAAGAAGATTTCGAC 57.403 36.000 0.00 0.00 40.81 4.20
311 313 5.723672 TCTACCAAGAAGATTTCGACTGT 57.276 39.130 0.00 0.00 34.02 3.55
327 329 4.693566 TCGACTGTTTCTCTTCTCTCTCTC 59.306 45.833 0.00 0.00 0.00 3.20
336 338 1.472082 CTTCTCTCTCTCGCTTGCTGA 59.528 52.381 0.00 0.00 0.00 4.26
338 340 0.179140 CTCTCTCTCGCTTGCTGACC 60.179 60.000 0.00 0.00 0.00 4.02
341 343 3.288308 CTCTCGCTTGCTGACCCGT 62.288 63.158 0.00 0.00 0.00 5.28
354 356 3.187700 CTGACCCGTTTCTTCCTTATCG 58.812 50.000 0.00 0.00 0.00 2.92
355 357 2.093869 TGACCCGTTTCTTCCTTATCGG 60.094 50.000 0.00 0.00 38.05 4.18
364 366 4.655762 TCTTCCTTATCGGACATCACAG 57.344 45.455 0.00 0.00 42.97 3.66
372 374 6.018425 CCTTATCGGACATCACAGATCAAAAG 60.018 42.308 0.00 0.00 33.16 2.27
373 375 3.002791 TCGGACATCACAGATCAAAAGC 58.997 45.455 0.00 0.00 0.00 3.51
378 380 4.147321 ACATCACAGATCAAAAGCCAGTT 58.853 39.130 0.00 0.00 0.00 3.16
404 407 4.463050 ACAACCAATCCCTAGGTTTTCA 57.537 40.909 8.29 0.00 45.46 2.69
419 422 0.179094 TTTCACACGCGTCAAGTCCT 60.179 50.000 9.86 0.00 0.00 3.85
431 434 2.157863 GTCAAGTCCTGCTAAAAGCGAC 59.842 50.000 0.00 0.00 46.26 5.19
433 436 2.543777 AGTCCTGCTAAAAGCGACAA 57.456 45.000 8.85 0.00 46.26 3.18
441 444 0.945265 TAAAAGCGACAACGGACCCG 60.945 55.000 6.94 6.94 46.03 5.28
442 445 2.647680 AAAAGCGACAACGGACCCGA 62.648 55.000 16.07 0.00 42.83 5.14
443 446 3.853597 AAGCGACAACGGACCCGAC 62.854 63.158 16.07 3.09 42.83 4.79
446 449 3.673484 GACAACGGACCCGACGGA 61.673 66.667 17.49 0.00 42.83 4.69
447 450 3.621892 GACAACGGACCCGACGGAG 62.622 68.421 17.49 8.21 42.83 4.63
477 481 5.793817 TCAGGAACGAAGAAGATCAAATGA 58.206 37.500 0.00 0.00 0.00 2.57
491 495 6.043854 GATCAAATGATCTAGGGGTAGACC 57.956 45.833 14.65 0.00 45.60 3.85
493 497 4.901849 TCAAATGATCTAGGGGTAGACCAG 59.098 45.833 0.21 0.00 42.91 4.00
494 498 2.383442 TGATCTAGGGGTAGACCAGC 57.617 55.000 0.21 0.00 42.91 4.85
512 523 4.056584 GGGGGCTTGGTGGGGTAC 62.057 72.222 0.00 0.00 0.00 3.34
540 551 5.799213 ACTGAGGATGAAAACTCTAACCAG 58.201 41.667 0.00 0.00 34.84 4.00
588 599 4.631131 CCAAATTCAGTCCTTGGGTTTTC 58.369 43.478 0.00 0.00 36.70 2.29
722 733 3.069980 GAGCGGGAGACAGATGCGT 62.070 63.158 0.00 0.00 0.00 5.24
748 759 3.370840 AGCAGATGTTGGCTGGAATTA 57.629 42.857 0.00 0.00 39.30 1.40
764 776 3.606687 GAATTAAGACGAAGGGAGGCAA 58.393 45.455 0.00 0.00 0.00 4.52
769 781 0.391263 GACGAAGGGAGGCAAACGAT 60.391 55.000 0.00 0.00 0.00 3.73
776 788 2.159382 GGGAGGCAAACGATGAAAAGA 58.841 47.619 0.00 0.00 0.00 2.52
781 793 2.094545 GGCAAACGATGAAAAGAGGCAT 60.095 45.455 0.00 0.00 0.00 4.40
790 802 4.428294 TGAAAAGAGGCATAGGATCTGG 57.572 45.455 0.00 0.00 0.00 3.86
795 807 1.073897 GGCATAGGATCTGGTGGCC 59.926 63.158 0.00 0.00 0.00 5.36
1094 1655 4.052229 CCGTGGCTTCTCGTCGGT 62.052 66.667 0.00 0.00 36.99 4.69
1106 1667 4.083862 GTCGGTGGTGAGGCCCTC 62.084 72.222 2.98 2.98 36.04 4.30
1226 1787 5.221130 GGGGATCTCTCGTTAATTCTTACG 58.779 45.833 0.00 0.00 39.03 3.18
1245 1806 1.068417 TCCGTTGTACTTGTGCGCT 59.932 52.632 9.73 0.00 0.00 5.92
1250 1811 2.981805 CGTTGTACTTGTGCGCTACTTA 59.018 45.455 9.73 0.00 0.00 2.24
1308 1869 3.008594 TCGAGGGTTTAGGATTTGCTTGA 59.991 43.478 0.00 0.00 0.00 3.02
1322 1883 1.675310 CTTGAAGCGGCACCCATCA 60.675 57.895 1.45 0.00 0.00 3.07
1323 1884 1.228398 TTGAAGCGGCACCCATCAA 60.228 52.632 1.45 2.16 0.00 2.57
1331 1892 2.484770 GCGGCACCCATCAAACTATCTA 60.485 50.000 0.00 0.00 0.00 1.98
1362 1923 3.526019 TCATAATTCCCTTCCGGTCCTTT 59.474 43.478 0.00 0.00 0.00 3.11
1406 1967 1.854227 GATCGGGCGGAGAAGTTTAG 58.146 55.000 0.20 0.00 0.00 1.85
1407 1968 0.179081 ATCGGGCGGAGAAGTTTAGC 60.179 55.000 0.20 0.00 0.00 3.09
1408 1969 1.218316 CGGGCGGAGAAGTTTAGCT 59.782 57.895 0.00 0.00 0.00 3.32
1437 1998 3.535561 TGCGATTCATCTCCCTTTCTTC 58.464 45.455 0.00 0.00 0.00 2.87
1465 2028 7.595819 ATTTATTTCTGGACTGGTGTTTTGA 57.404 32.000 0.00 0.00 0.00 2.69
1482 2045 8.190784 GGTGTTTTGATTTGGGTTAGATGATAG 58.809 37.037 0.00 0.00 0.00 2.08
1484 2047 9.699410 TGTTTTGATTTGGGTTAGATGATAGAT 57.301 29.630 0.00 0.00 0.00 1.98
1487 2050 9.784531 TTTGATTTGGGTTAGATGATAGATCTC 57.215 33.333 0.00 0.00 0.00 2.75
1489 2052 8.370940 TGATTTGGGTTAGATGATAGATCTCAC 58.629 37.037 0.00 0.00 0.00 3.51
1494 2057 6.723977 GGGTTAGATGATAGATCTCACCTCTT 59.276 42.308 0.00 0.00 40.50 2.85
1495 2058 7.309744 GGGTTAGATGATAGATCTCACCTCTTG 60.310 44.444 0.00 0.00 40.50 3.02
1496 2059 7.309744 GGTTAGATGATAGATCTCACCTCTTGG 60.310 44.444 0.00 0.00 38.65 3.61
1526 2106 5.477637 GGATGACCATCTAGGGTTCTACTAC 59.522 48.000 9.56 0.00 42.53 2.73
1533 2113 6.015856 CCATCTAGGGTTCTACTACTGTGATG 60.016 46.154 0.00 0.00 0.00 3.07
1535 2115 3.441101 AGGGTTCTACTACTGTGATGCA 58.559 45.455 0.00 0.00 0.00 3.96
1565 2145 5.012664 TCGATTTGCCTTTATATCTGGGCTA 59.987 40.000 12.04 4.33 44.36 3.93
1609 2190 6.427547 CCACCTTTTGCAAATATTTGTGATGT 59.572 34.615 25.15 14.20 40.24 3.06
1626 2207 5.476599 TGTGATGTTTCCCATTTTGGTCTAG 59.523 40.000 0.00 0.00 35.17 2.43
1635 2216 4.504858 CCATTTTGGTCTAGTAGACGCTT 58.495 43.478 21.29 4.59 45.96 4.68
1645 2228 3.724295 AGTAGACGCTTTGATTTTCGC 57.276 42.857 0.00 0.00 0.00 4.70
1664 2247 2.352960 CGCTTAGGATGAGCTTTGGTTC 59.647 50.000 0.00 0.00 37.99 3.62
1733 2316 2.223618 CGCTAGTAGTCTTCAGCCTTCC 60.224 54.545 0.00 0.00 0.00 3.46
1750 2333 3.659092 CGCTGCCGCTTTGGTTGA 61.659 61.111 0.00 0.00 41.21 3.18
1928 2511 0.890683 GGCAAAACCATGGTGGAGAG 59.109 55.000 20.60 8.36 40.96 3.20
1972 2559 9.749490 CACATATGTTTCAAATTTCATTTCTGC 57.251 29.630 5.37 0.00 0.00 4.26
2093 3924 1.391157 AAGCCTGCAAAGAAACGGCA 61.391 50.000 12.78 0.00 43.07 5.69
2164 3995 9.475620 AAAAGTTTAAGGAAGAGGAAGAAGAAA 57.524 29.630 0.00 0.00 0.00 2.52
2186 4017 4.762289 ATAAGGTCACATCCTCCAAGAC 57.238 45.455 0.00 0.00 36.74 3.01
2411 4245 6.488344 TCTGGTGTAAGTCATGCAATAACAAA 59.512 34.615 0.00 0.00 0.00 2.83
2437 4271 3.499338 ACTGTGGGAAATGCATCAAGAA 58.501 40.909 0.00 0.00 0.00 2.52
2602 4437 4.602259 ATATGTGGACGCGGCGGG 62.602 66.667 27.37 23.00 0.00 6.13
2611 4446 4.215742 CGCGGCGGGAATGTCCTA 62.216 66.667 20.10 0.00 36.57 2.94
2773 4612 9.801873 AAATATTTTTATTCCATTGGTGACTCG 57.198 29.630 1.86 0.00 0.00 4.18
2999 4839 6.989796 TCATGTTGATTTTGATTGTGTTCG 57.010 33.333 0.00 0.00 0.00 3.95
3006 4846 8.368126 GTTGATTTTGATTGTGTTCGAATGATC 58.632 33.333 0.00 3.85 0.00 2.92
3164 5005 2.821969 GCAAAAGGAGCAGATGGAAGAA 59.178 45.455 0.00 0.00 0.00 2.52
3179 5028 6.605194 AGATGGAAGAAAAGAAATTAGAGGCC 59.395 38.462 0.00 0.00 0.00 5.19
3305 5160 1.896220 TGGAACAGATCAAGTGTGGC 58.104 50.000 0.00 0.00 0.00 5.01
3627 5510 3.481559 TTGAGGAGGAAGATGGACTCT 57.518 47.619 0.00 0.00 34.96 3.24
3809 7231 2.874701 CTGACAAAGTTGTGAGGAGTGG 59.125 50.000 0.42 0.00 42.43 4.00
3818 7240 5.256474 AGTTGTGAGGAGTGGAATATTTGG 58.744 41.667 0.00 0.00 0.00 3.28
3885 8834 0.736325 CGGGCACGGTAAGAACTGAG 60.736 60.000 0.00 0.00 35.79 3.35
4166 9117 1.546323 CCTTGATTGGTGTGAGGTGCT 60.546 52.381 0.00 0.00 0.00 4.40
4218 9170 8.783093 TGTCATAGTTGTCGATTTCTTTGATTT 58.217 29.630 0.00 0.00 0.00 2.17
4246 9198 8.671384 TTTTTAGTAGTAAGCAGTGATTGTGT 57.329 30.769 3.32 0.00 0.00 3.72
4306 9258 0.038801 CTCTCGTGTGCTTGCTCTGA 60.039 55.000 0.00 0.00 0.00 3.27
4339 9291 6.425114 TCAGAAGTTCAAGCAGAAATACTCAC 59.575 38.462 5.50 0.00 38.13 3.51
4552 9504 6.036517 CACTGTATTATTTGTCAGGAGAGTGC 59.963 42.308 0.00 0.00 32.92 4.40
4565 9517 5.246203 TCAGGAGAGTGCATAGTTAACAAGT 59.754 40.000 8.61 0.00 0.00 3.16
4725 9679 8.194104 CCCATTTTGAATAATGATGTTTACCGA 58.806 33.333 0.00 0.00 37.65 4.69
4726 9680 9.748708 CCATTTTGAATAATGATGTTTACCGAT 57.251 29.630 0.00 0.00 37.65 4.18
4777 9731 6.922957 TGAGTCCCTTTGAATTTCGAAAATTG 59.077 34.615 15.66 2.68 0.00 2.32
4838 9792 2.802719 TGCAGGGGTCACTTAAAATCC 58.197 47.619 0.00 0.00 0.00 3.01
4860 9814 4.922103 CCGCGAGTTCTTTAAGGGATATAC 59.078 45.833 8.23 0.00 0.00 1.47
4872 9826 8.830915 TTTAAGGGATATACAAATGGCAGAAA 57.169 30.769 0.00 0.00 0.00 2.52
4945 9899 5.048224 TCCTTCTAGTACGTTTGACAAGAGG 60.048 44.000 0.00 0.00 0.00 3.69
5000 9954 1.702401 TGCCATTTCCTGAGTACACCA 59.298 47.619 0.00 0.00 0.00 4.17
5007 9961 4.715534 TTCCTGAGTACACCAATCCAAA 57.284 40.909 0.00 0.00 0.00 3.28
5010 9964 5.009631 TCCTGAGTACACCAATCCAAAATG 58.990 41.667 0.00 0.00 0.00 2.32
5032 9986 3.683340 GTGGTCCACTAAATCTTTCGGTC 59.317 47.826 15.22 0.00 0.00 4.79
5143 10097 3.504906 CAGTGACCAAGCTTCATTGTGAT 59.495 43.478 0.00 0.00 0.00 3.06
5161 10115 3.871006 GTGATGTTTCTGATGCGGTATGA 59.129 43.478 0.00 0.00 0.00 2.15
5177 10131 7.514805 TGCGGTATGATGCTATTTTTATAACG 58.485 34.615 0.00 0.00 35.12 3.18
5241 10201 4.207891 TGAAATGCTGGTCTCTACCTTC 57.792 45.455 0.00 0.00 46.91 3.46
5257 10217 0.656259 CTTCACGATCTGCATGCCAG 59.344 55.000 16.68 12.67 43.17 4.85
5295 10255 1.065199 CCTAGCAGATTTCCCTGTGCA 60.065 52.381 0.00 0.00 37.85 4.57
5296 10256 2.286872 CTAGCAGATTTCCCTGTGCAG 58.713 52.381 0.00 0.00 37.85 4.41
5301 10261 1.980765 AGATTTCCCTGTGCAGTCTCA 59.019 47.619 0.00 0.00 0.00 3.27
5317 10277 3.445450 AGTCTCACTGATCGTTGCATAGT 59.555 43.478 0.00 0.00 0.00 2.12
5318 10278 4.081972 AGTCTCACTGATCGTTGCATAGTT 60.082 41.667 0.00 0.00 0.00 2.24
5319 10279 4.627467 GTCTCACTGATCGTTGCATAGTTT 59.373 41.667 0.00 0.00 0.00 2.66
5353 10313 5.499139 TTTGTCTGTTGCTCTGGTTTAAG 57.501 39.130 0.00 0.00 0.00 1.85
5400 10360 6.208599 CCAGGTAAATATCCAAACACACACTT 59.791 38.462 0.00 0.00 0.00 3.16
5502 10462 1.543802 TGCGTGGGGATTTGAATTCAC 59.456 47.619 7.89 0.00 0.00 3.18
5688 10648 3.305950 GGTTTGCACATAAATGCTCCACA 60.306 43.478 0.00 0.00 46.28 4.17
5706 10666 0.437678 CATCGCGATGCTACAGATGC 59.562 55.000 33.70 0.00 33.41 3.91
5707 10667 0.316522 ATCGCGATGCTACAGATGCT 59.683 50.000 23.04 0.00 0.00 3.79
5721 10681 6.203723 GCTACAGATGCTGTTAAGGATAAAGG 59.796 42.308 5.31 0.00 42.59 3.11
5723 10683 5.191722 ACAGATGCTGTTAAGGATAAAGGGA 59.808 40.000 0.00 0.00 42.59 4.20
5791 10751 5.706916 ACTCATTTGTACTATCAACGTCGT 58.293 37.500 0.00 0.00 0.00 4.34
5808 10768 0.163788 CGTGCTAACAGAAAGGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
5835 10795 1.075601 AAAGCCAGTGATCCTCCCAA 58.924 50.000 0.00 0.00 0.00 4.12
5836 10796 0.622665 AAGCCAGTGATCCTCCCAAG 59.377 55.000 0.00 0.00 0.00 3.61
5837 10797 1.452833 GCCAGTGATCCTCCCAAGC 60.453 63.158 0.00 0.00 0.00 4.01
5838 10798 1.225704 CCAGTGATCCTCCCAAGCC 59.774 63.158 0.00 0.00 0.00 4.35
5839 10799 1.565390 CCAGTGATCCTCCCAAGCCA 61.565 60.000 0.00 0.00 0.00 4.75
5840 10800 0.107312 CAGTGATCCTCCCAAGCCAG 60.107 60.000 0.00 0.00 0.00 4.85
6101 11061 8.948631 TCTGTTCCATTCATAGAAGTTACATC 57.051 34.615 0.00 0.00 0.00 3.06
6256 11217 7.562088 ACCTTAAGTGTTAAATCTTCCCAAACA 59.438 33.333 0.97 0.00 0.00 2.83
6257 11218 7.865889 CCTTAAGTGTTAAATCTTCCCAAACAC 59.134 37.037 8.23 8.23 46.43 3.32
6272 11235 3.317711 CCAAACACAGTGTGCCTCATTAA 59.682 43.478 23.21 0.00 36.98 1.40
6298 11261 7.523293 TGTGATGTCATTTCCTTATGTGTTT 57.477 32.000 0.00 0.00 0.00 2.83
6407 11370 7.308435 CAAGTCAGGAATTTGAAGGTATGAAC 58.692 38.462 0.00 0.00 0.00 3.18
6436 11399 5.531287 ACTCTCTTTTGAATTTAGCACGGTT 59.469 36.000 0.00 0.00 0.00 4.44
6503 11466 1.904287 CGATGGACTTTGTTTCCCCA 58.096 50.000 0.00 0.00 31.33 4.96
6599 11562 3.922171 AAGCTAGAGGTTAGCAGCATT 57.078 42.857 8.69 0.00 42.68 3.56
6604 11567 4.437930 GCTAGAGGTTAGCAGCATTTGTTG 60.438 45.833 0.00 0.00 40.14 3.33
6606 11569 3.891366 AGAGGTTAGCAGCATTTGTTGTT 59.109 39.130 0.00 0.00 0.00 2.83
6614 11577 4.209703 AGCAGCATTTGTTGTTGAAAATCG 59.790 37.500 0.00 0.00 38.74 3.34
6633 11649 6.598753 AATCGCGCTTACTACATTGTATTT 57.401 33.333 5.56 0.00 0.00 1.40
6666 11683 3.194005 TGACTGGTCTGAAGTTGGTTC 57.806 47.619 2.38 0.00 35.48 3.62
6719 11736 2.432206 TGCGTTTCTCGATGTTCTCA 57.568 45.000 0.00 0.00 42.86 3.27
6869 11894 4.643387 AACCAGTCCAGCGGTGGC 62.643 66.667 28.72 22.08 44.60 5.01
6931 11956 2.122167 GTGGCTCTCGGTCTCGGAT 61.122 63.158 0.00 0.00 36.95 4.18
6944 11969 0.798776 CTCGGATGTGACTGGTTTGC 59.201 55.000 0.00 0.00 0.00 3.68
6945 11970 0.605319 TCGGATGTGACTGGTTTGCC 60.605 55.000 0.00 0.00 0.00 4.52
6946 11971 0.606401 CGGATGTGACTGGTTTGCCT 60.606 55.000 0.00 0.00 35.27 4.75
6947 11972 0.883833 GGATGTGACTGGTTTGCCTG 59.116 55.000 0.00 0.00 39.33 4.85
6948 11973 0.242017 GATGTGACTGGTTTGCCTGC 59.758 55.000 0.00 0.00 37.23 4.85
7076 12120 0.038892 CAAGTTGACTGCACATGCCC 60.039 55.000 0.00 0.00 41.18 5.36
7091 12135 2.642154 TGCCCGTTGGAGTTTCTTTA 57.358 45.000 0.00 0.00 0.00 1.85
7178 12222 2.861462 TGCCTTATTTAATGCCGTGC 57.139 45.000 0.00 0.00 0.00 5.34
7180 12224 1.064952 GCCTTATTTAATGCCGTGCGT 59.935 47.619 0.00 0.00 0.00 5.24
7219 12263 5.922544 CCAATCCTCACAACTTGTTGAATTC 59.077 40.000 18.82 0.00 0.00 2.17
7291 12387 6.546034 TGTAGAATCACTGATAAGACGGATCA 59.454 38.462 0.00 0.00 0.00 2.92
7302 12398 6.870439 TGATAAGACGGATCAATCTTATGCTG 59.130 38.462 24.64 0.00 44.47 4.41
7401 13107 2.808202 CGATGATTCCAGATGGTCCACC 60.808 54.545 0.00 0.00 36.34 4.61
7486 13203 4.608774 TCACACCGTCCCCGACCT 62.609 66.667 0.00 0.00 35.63 3.85
7621 13339 3.668386 GGTTCGCCTTTGAGTGGG 58.332 61.111 0.00 0.00 0.00 4.61
7752 13477 4.030913 TGTACACCTGAGGAGGAAATAGG 58.969 47.826 4.99 0.00 42.93 2.57
7789 13514 0.673985 TGATAAGGGAGCGGTCATCG 59.326 55.000 17.59 0.00 42.76 3.84
7790 13515 0.038159 GATAAGGGAGCGGTCATCGG 60.038 60.000 17.59 0.00 39.69 4.18
7791 13516 1.472662 ATAAGGGAGCGGTCATCGGG 61.473 60.000 17.59 0.00 39.69 5.14
7798 13523 4.460683 CGGTCATCGGGGGCGAAA 62.461 66.667 0.00 0.00 34.75 3.46
7799 13524 2.822701 GGTCATCGGGGGCGAAAC 60.823 66.667 0.00 0.00 0.00 2.78
7800 13525 2.822701 GTCATCGGGGGCGAAACC 60.823 66.667 0.00 0.00 37.93 3.27
7811 13536 2.760634 GGCGAAACCCATTGGATTTT 57.239 45.000 3.62 3.12 34.81 1.82
7812 13537 2.345876 GGCGAAACCCATTGGATTTTG 58.654 47.619 3.62 4.69 34.81 2.44
7813 13538 1.731709 GCGAAACCCATTGGATTTTGC 59.268 47.619 17.34 17.34 36.14 3.68
7814 13539 2.345876 CGAAACCCATTGGATTTTGCC 58.654 47.619 3.62 0.00 34.81 4.52
7815 13540 2.028203 CGAAACCCATTGGATTTTGCCT 60.028 45.455 3.62 0.00 34.81 4.75
7816 13541 3.556843 CGAAACCCATTGGATTTTGCCTT 60.557 43.478 3.62 0.00 34.81 4.35
7817 13542 3.421919 AACCCATTGGATTTTGCCTTG 57.578 42.857 3.62 0.00 34.81 3.61
7818 13543 1.003464 ACCCATTGGATTTTGCCTTGC 59.997 47.619 3.62 0.00 34.81 4.01
7819 13544 1.279846 CCCATTGGATTTTGCCTTGCT 59.720 47.619 3.62 0.00 0.00 3.91
7820 13545 2.500910 CCCATTGGATTTTGCCTTGCTA 59.499 45.455 3.62 0.00 0.00 3.49
7821 13546 3.055240 CCCATTGGATTTTGCCTTGCTAA 60.055 43.478 3.62 0.00 0.00 3.09
7822 13547 4.565236 CCCATTGGATTTTGCCTTGCTAAA 60.565 41.667 3.62 0.00 37.61 1.85
7823 13548 4.392754 CCATTGGATTTTGCCTTGCTAAAC 59.607 41.667 0.00 0.00 36.31 2.01
7824 13549 4.953940 TTGGATTTTGCCTTGCTAAACT 57.046 36.364 0.00 0.00 36.31 2.66
7825 13550 4.519540 TGGATTTTGCCTTGCTAAACTC 57.480 40.909 0.00 0.00 36.31 3.01
7826 13551 3.894427 TGGATTTTGCCTTGCTAAACTCA 59.106 39.130 0.00 0.00 36.31 3.41
7827 13552 4.527816 TGGATTTTGCCTTGCTAAACTCAT 59.472 37.500 0.00 0.00 36.31 2.90
7828 13553 5.105063 GGATTTTGCCTTGCTAAACTCATC 58.895 41.667 0.00 0.00 36.31 2.92
7829 13554 4.519540 TTTTGCCTTGCTAAACTCATCC 57.480 40.909 0.00 0.00 29.61 3.51
7830 13555 3.439857 TTGCCTTGCTAAACTCATCCT 57.560 42.857 0.00 0.00 0.00 3.24
7831 13556 2.991250 TGCCTTGCTAAACTCATCCTC 58.009 47.619 0.00 0.00 0.00 3.71
7832 13557 2.305635 TGCCTTGCTAAACTCATCCTCA 59.694 45.455 0.00 0.00 0.00 3.86
7833 13558 2.680339 GCCTTGCTAAACTCATCCTCAC 59.320 50.000 0.00 0.00 0.00 3.51
7834 13559 3.869912 GCCTTGCTAAACTCATCCTCACA 60.870 47.826 0.00 0.00 0.00 3.58
7835 13560 4.326826 CCTTGCTAAACTCATCCTCACAA 58.673 43.478 0.00 0.00 0.00 3.33
7836 13561 4.394300 CCTTGCTAAACTCATCCTCACAAG 59.606 45.833 0.00 0.00 33.50 3.16
7837 13562 4.890158 TGCTAAACTCATCCTCACAAGA 57.110 40.909 0.00 0.00 0.00 3.02
7838 13563 5.227569 TGCTAAACTCATCCTCACAAGAA 57.772 39.130 0.00 0.00 0.00 2.52
7839 13564 5.620206 TGCTAAACTCATCCTCACAAGAAA 58.380 37.500 0.00 0.00 0.00 2.52
7840 13565 6.061441 TGCTAAACTCATCCTCACAAGAAAA 58.939 36.000 0.00 0.00 0.00 2.29
7841 13566 6.716628 TGCTAAACTCATCCTCACAAGAAAAT 59.283 34.615 0.00 0.00 0.00 1.82
7842 13567 7.094634 TGCTAAACTCATCCTCACAAGAAAATC 60.095 37.037 0.00 0.00 0.00 2.17
7843 13568 5.869753 AACTCATCCTCACAAGAAAATCG 57.130 39.130 0.00 0.00 0.00 3.34
7844 13569 4.899502 ACTCATCCTCACAAGAAAATCGT 58.100 39.130 0.00 0.00 0.00 3.73
7845 13570 6.037786 ACTCATCCTCACAAGAAAATCGTA 57.962 37.500 0.00 0.00 0.00 3.43
7846 13571 6.464222 ACTCATCCTCACAAGAAAATCGTAA 58.536 36.000 0.00 0.00 0.00 3.18
7847 13572 6.934645 ACTCATCCTCACAAGAAAATCGTAAA 59.065 34.615 0.00 0.00 0.00 2.01
7848 13573 7.095187 ACTCATCCTCACAAGAAAATCGTAAAC 60.095 37.037 0.00 0.00 0.00 2.01
7849 13574 5.934935 TCCTCACAAGAAAATCGTAAACC 57.065 39.130 0.00 0.00 0.00 3.27
7850 13575 5.617252 TCCTCACAAGAAAATCGTAAACCT 58.383 37.500 0.00 0.00 0.00 3.50
7851 13576 6.059484 TCCTCACAAGAAAATCGTAAACCTT 58.941 36.000 0.00 0.00 0.00 3.50
7852 13577 6.544564 TCCTCACAAGAAAATCGTAAACCTTT 59.455 34.615 0.00 0.00 0.00 3.11
7853 13578 6.856426 CCTCACAAGAAAATCGTAAACCTTTC 59.144 38.462 0.00 0.00 0.00 2.62
7854 13579 6.731164 TCACAAGAAAATCGTAAACCTTTCC 58.269 36.000 0.00 0.00 0.00 3.13
7855 13580 5.918576 CACAAGAAAATCGTAAACCTTTCCC 59.081 40.000 0.00 0.00 0.00 3.97
7856 13581 5.151389 CAAGAAAATCGTAAACCTTTCCCG 58.849 41.667 0.00 0.00 0.00 5.14
7857 13582 4.392047 AGAAAATCGTAAACCTTTCCCGT 58.608 39.130 0.00 0.00 0.00 5.28
7858 13583 4.823442 AGAAAATCGTAAACCTTTCCCGTT 59.177 37.500 0.00 0.00 0.00 4.44
7859 13584 4.492791 AAATCGTAAACCTTTCCCGTTG 57.507 40.909 0.00 0.00 0.00 4.10
7860 13585 1.228533 TCGTAAACCTTTCCCGTTGC 58.771 50.000 0.00 0.00 0.00 4.17
7861 13586 0.239082 CGTAAACCTTTCCCGTTGCC 59.761 55.000 0.00 0.00 0.00 4.52
7862 13587 1.320507 GTAAACCTTTCCCGTTGCCA 58.679 50.000 0.00 0.00 0.00 4.92
7863 13588 1.890489 GTAAACCTTTCCCGTTGCCAT 59.110 47.619 0.00 0.00 0.00 4.40
7864 13589 0.966179 AAACCTTTCCCGTTGCCATC 59.034 50.000 0.00 0.00 0.00 3.51
7865 13590 0.178975 AACCTTTCCCGTTGCCATCA 60.179 50.000 0.00 0.00 0.00 3.07
7866 13591 0.893727 ACCTTTCCCGTTGCCATCAC 60.894 55.000 0.00 0.00 0.00 3.06
7867 13592 0.609131 CCTTTCCCGTTGCCATCACT 60.609 55.000 0.00 0.00 0.00 3.41
7868 13593 1.339631 CCTTTCCCGTTGCCATCACTA 60.340 52.381 0.00 0.00 0.00 2.74
7869 13594 2.643551 CTTTCCCGTTGCCATCACTAT 58.356 47.619 0.00 0.00 0.00 2.12
7870 13595 2.036958 TTCCCGTTGCCATCACTATG 57.963 50.000 0.00 0.00 0.00 2.23
7871 13596 0.463654 TCCCGTTGCCATCACTATGC 60.464 55.000 0.00 0.00 0.00 3.14
7872 13597 0.747644 CCCGTTGCCATCACTATGCA 60.748 55.000 0.00 0.00 0.00 3.96
7873 13598 1.311859 CCGTTGCCATCACTATGCAT 58.688 50.000 3.79 3.79 0.00 3.96
7874 13599 1.002142 CCGTTGCCATCACTATGCATG 60.002 52.381 10.16 1.82 0.00 4.06
7875 13600 1.002142 CGTTGCCATCACTATGCATGG 60.002 52.381 10.16 9.41 42.39 3.66
7876 13601 1.338973 GTTGCCATCACTATGCATGGG 59.661 52.381 15.11 7.42 40.16 4.00
7877 13602 0.178984 TGCCATCACTATGCATGGGG 60.179 55.000 15.11 10.86 40.16 4.96
7878 13603 1.530013 GCCATCACTATGCATGGGGC 61.530 60.000 15.11 12.97 40.16 5.80
7879 13604 0.111832 CCATCACTATGCATGGGGCT 59.888 55.000 15.11 0.00 45.15 5.19
7880 13605 1.352017 CCATCACTATGCATGGGGCTA 59.648 52.381 15.11 0.00 45.15 3.93
7881 13606 2.617276 CCATCACTATGCATGGGGCTAG 60.617 54.545 15.11 2.60 45.15 3.42
7882 13607 1.806496 TCACTATGCATGGGGCTAGT 58.194 50.000 15.11 3.29 45.15 2.57
7883 13608 2.126882 TCACTATGCATGGGGCTAGTT 58.873 47.619 15.11 0.00 45.15 2.24
7884 13609 2.509548 TCACTATGCATGGGGCTAGTTT 59.490 45.455 15.11 0.00 45.15 2.66
7885 13610 3.053693 TCACTATGCATGGGGCTAGTTTT 60.054 43.478 15.11 0.00 45.15 2.43
7886 13611 3.316308 CACTATGCATGGGGCTAGTTTTC 59.684 47.826 15.11 0.00 45.15 2.29
7887 13612 1.780503 ATGCATGGGGCTAGTTTTCC 58.219 50.000 0.00 0.00 45.15 3.13
7888 13613 0.679640 TGCATGGGGCTAGTTTTCCG 60.680 55.000 0.00 0.00 45.15 4.30
7889 13614 0.679960 GCATGGGGCTAGTTTTCCGT 60.680 55.000 0.00 0.00 40.25 4.69
7890 13615 1.379527 CATGGGGCTAGTTTTCCGTC 58.620 55.000 0.00 0.00 0.00 4.79
7891 13616 0.255033 ATGGGGCTAGTTTTCCGTCC 59.745 55.000 0.00 0.00 0.00 4.79
7892 13617 1.449070 GGGGCTAGTTTTCCGTCCG 60.449 63.158 0.00 0.00 0.00 4.79
7893 13618 1.294459 GGGCTAGTTTTCCGTCCGT 59.706 57.895 0.00 0.00 0.00 4.69
7894 13619 0.738762 GGGCTAGTTTTCCGTCCGTC 60.739 60.000 0.00 0.00 0.00 4.79
7895 13620 0.738762 GGCTAGTTTTCCGTCCGTCC 60.739 60.000 0.00 0.00 0.00 4.79
7896 13621 0.245813 GCTAGTTTTCCGTCCGTCCT 59.754 55.000 0.00 0.00 0.00 3.85
7897 13622 1.735038 GCTAGTTTTCCGTCCGTCCTC 60.735 57.143 0.00 0.00 0.00 3.71
7898 13623 1.817447 CTAGTTTTCCGTCCGTCCTCT 59.183 52.381 0.00 0.00 0.00 3.69
7899 13624 1.915141 AGTTTTCCGTCCGTCCTCTA 58.085 50.000 0.00 0.00 0.00 2.43
7900 13625 2.242043 AGTTTTCCGTCCGTCCTCTAA 58.758 47.619 0.00 0.00 0.00 2.10
7901 13626 2.629617 AGTTTTCCGTCCGTCCTCTAAA 59.370 45.455 0.00 0.00 0.00 1.85
7902 13627 2.730550 TTTCCGTCCGTCCTCTAAAC 57.269 50.000 0.00 0.00 0.00 2.01
7903 13628 1.915141 TTCCGTCCGTCCTCTAAACT 58.085 50.000 0.00 0.00 0.00 2.66
7904 13629 1.457346 TCCGTCCGTCCTCTAAACTC 58.543 55.000 0.00 0.00 0.00 3.01
7905 13630 1.171308 CCGTCCGTCCTCTAAACTCA 58.829 55.000 0.00 0.00 0.00 3.41
7906 13631 1.749634 CCGTCCGTCCTCTAAACTCAT 59.250 52.381 0.00 0.00 0.00 2.90
7907 13632 2.223525 CCGTCCGTCCTCTAAACTCATC 60.224 54.545 0.00 0.00 0.00 2.92
7908 13633 2.539142 CGTCCGTCCTCTAAACTCATCG 60.539 54.545 0.00 0.00 0.00 3.84
7909 13634 2.022195 TCCGTCCTCTAAACTCATCGG 58.978 52.381 0.00 0.00 38.36 4.18
7910 13635 1.067212 CCGTCCTCTAAACTCATCGGG 59.933 57.143 0.00 0.00 34.24 5.14
7911 13636 1.749634 CGTCCTCTAAACTCATCGGGT 59.250 52.381 0.00 0.00 0.00 5.28
7912 13637 2.165845 CGTCCTCTAAACTCATCGGGTT 59.834 50.000 0.00 0.00 0.00 4.11
7913 13638 3.522553 GTCCTCTAAACTCATCGGGTTG 58.477 50.000 0.00 0.00 0.00 3.77
7914 13639 2.500098 TCCTCTAAACTCATCGGGTTGG 59.500 50.000 0.00 0.00 0.00 3.77
7915 13640 2.236395 CCTCTAAACTCATCGGGTTGGT 59.764 50.000 0.00 0.00 0.00 3.67
7916 13641 3.262420 CTCTAAACTCATCGGGTTGGTG 58.738 50.000 0.00 0.00 0.00 4.17
7917 13642 2.027561 TCTAAACTCATCGGGTTGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
7918 13643 0.251165 AAACTCATCGGGTTGGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
7919 13644 1.131303 AACTCATCGGGTTGGTGGGA 61.131 55.000 0.00 0.00 0.00 4.37
7920 13645 1.131303 ACTCATCGGGTTGGTGGGAA 61.131 55.000 0.00 0.00 0.00 3.97
7921 13646 0.676782 CTCATCGGGTTGGTGGGAAC 60.677 60.000 0.00 0.00 0.00 3.62
7935 13660 2.068915 GGAACCTACCGGAAACCCA 58.931 57.895 9.46 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.261671 CGGAACCAGACCGTCCTG 59.738 66.667 0.00 0.00 44.57 3.86
34 35 1.785208 AGCAATGAATATGGGGCCTCT 59.215 47.619 3.07 0.00 0.00 3.69
35 36 2.299326 AGCAATGAATATGGGGCCTC 57.701 50.000 0.84 0.00 0.00 4.70
93 94 8.526147 CACTTGGAGGAAAATCAATGATAACTT 58.474 33.333 0.00 0.00 0.00 2.66
95 96 7.970614 GTCACTTGGAGGAAAATCAATGATAAC 59.029 37.037 0.00 0.00 0.00 1.89
126 128 2.254546 TTTAGCATGGTATCCGGCAG 57.745 50.000 5.28 0.00 0.00 4.85
135 137 3.540617 TGTGATACGCATTTAGCATGGT 58.459 40.909 1.62 1.62 46.13 3.55
153 155 2.787994 ACCCTCATGCTCTTTTCTGTG 58.212 47.619 0.00 0.00 0.00 3.66
186 188 4.351874 GCTATAGCCAAGGTGGATACAA 57.648 45.455 14.13 0.00 41.71 2.41
292 294 5.368989 AGAAACAGTCGAAATCTTCTTGGT 58.631 37.500 0.00 0.00 0.00 3.67
306 308 4.671766 GCGAGAGAGAGAAGAGAAACAGTC 60.672 50.000 0.00 0.00 0.00 3.51
308 310 3.440173 AGCGAGAGAGAGAAGAGAAACAG 59.560 47.826 0.00 0.00 0.00 3.16
311 313 3.366883 GCAAGCGAGAGAGAGAAGAGAAA 60.367 47.826 0.00 0.00 0.00 2.52
327 329 1.507141 AAGAAACGGGTCAGCAAGCG 61.507 55.000 0.00 0.00 0.00 4.68
336 338 2.685850 CCGATAAGGAAGAAACGGGT 57.314 50.000 0.00 0.00 45.00 5.28
354 356 3.084039 TGGCTTTTGATCTGTGATGTCC 58.916 45.455 0.00 0.00 0.00 4.02
355 357 3.755378 ACTGGCTTTTGATCTGTGATGTC 59.245 43.478 0.00 0.00 0.00 3.06
364 366 4.846779 TGTTGGTAACTGGCTTTTGATC 57.153 40.909 0.00 0.00 37.61 2.92
372 374 2.029380 GGATTGGTTGTTGGTAACTGGC 60.029 50.000 0.00 0.00 37.61 4.85
373 375 2.560981 GGGATTGGTTGTTGGTAACTGG 59.439 50.000 0.00 0.00 37.61 4.00
378 380 3.261962 ACCTAGGGATTGGTTGTTGGTA 58.738 45.455 14.81 0.00 31.62 3.25
404 407 1.802337 TAGCAGGACTTGACGCGTGT 61.802 55.000 20.70 8.91 0.00 4.49
419 422 0.863144 GTCCGTTGTCGCTTTTAGCA 59.137 50.000 0.00 0.00 42.58 3.49
446 449 0.459237 CTTCGTTCCTGAGCGATGCT 60.459 55.000 6.92 0.00 43.19 3.79
447 450 0.458543 TCTTCGTTCCTGAGCGATGC 60.459 55.000 6.92 0.00 43.19 3.91
448 451 1.923204 CTTCTTCGTTCCTGAGCGATG 59.077 52.381 6.92 9.42 43.19 3.84
449 452 1.819288 TCTTCTTCGTTCCTGAGCGAT 59.181 47.619 6.92 0.00 43.19 4.58
450 453 1.244816 TCTTCTTCGTTCCTGAGCGA 58.755 50.000 1.83 1.83 42.09 4.93
454 458 5.793817 TCATTTGATCTTCTTCGTTCCTGA 58.206 37.500 0.00 0.00 0.00 3.86
477 481 0.178958 CCGCTGGTCTACCCCTAGAT 60.179 60.000 0.00 0.00 31.39 1.98
512 523 4.841422 AGAGTTTTCATCCTCAGTCATGG 58.159 43.478 0.00 0.00 0.00 3.66
514 525 6.013379 TGGTTAGAGTTTTCATCCTCAGTCAT 60.013 38.462 0.00 0.00 0.00 3.06
517 528 5.544176 TCTGGTTAGAGTTTTCATCCTCAGT 59.456 40.000 0.00 0.00 0.00 3.41
519 530 6.627087 ATCTGGTTAGAGTTTTCATCCTCA 57.373 37.500 0.00 0.00 36.14 3.86
520 531 9.449719 TTTTATCTGGTTAGAGTTTTCATCCTC 57.550 33.333 0.00 0.00 36.14 3.71
549 560 4.591321 TTTGGCTATGGGTTCTGAGATT 57.409 40.909 0.00 0.00 0.00 2.40
550 561 4.803329 ATTTGGCTATGGGTTCTGAGAT 57.197 40.909 0.00 0.00 0.00 2.75
588 599 8.883731 CCTACCTAGATCAAAACAGTACAAATG 58.116 37.037 0.00 0.00 0.00 2.32
669 680 1.256812 CACCGGCTTCCCTTTTTCAT 58.743 50.000 0.00 0.00 0.00 2.57
678 689 0.031585 GAAACAAACCACCGGCTTCC 59.968 55.000 0.00 0.00 0.00 3.46
684 695 0.236449 GCCGTAGAAACAAACCACCG 59.764 55.000 0.00 0.00 0.00 4.94
722 733 2.153645 CAGCCAACATCTGCTACAACA 58.846 47.619 0.00 0.00 35.69 3.33
748 759 0.602905 CGTTTGCCTCCCTTCGTCTT 60.603 55.000 0.00 0.00 0.00 3.01
764 776 4.487714 TCCTATGCCTCTTTTCATCGTT 57.512 40.909 0.00 0.00 0.00 3.85
769 781 3.782523 ACCAGATCCTATGCCTCTTTTCA 59.217 43.478 0.00 0.00 0.00 2.69
776 788 1.422161 GGCCACCAGATCCTATGCCT 61.422 60.000 0.00 0.00 34.61 4.75
781 793 0.469331 CCTACGGCCACCAGATCCTA 60.469 60.000 2.24 0.00 0.00 2.94
790 802 3.602483 TGATTAAACTTCCTACGGCCAC 58.398 45.455 2.24 0.00 0.00 5.01
795 807 3.555956 AGCGCATGATTAAACTTCCTACG 59.444 43.478 11.47 0.00 0.00 3.51
871 883 2.227865 GCGAGTCTTTGTATTTTGGGCA 59.772 45.455 0.00 0.00 0.00 5.36
872 884 2.415491 GGCGAGTCTTTGTATTTTGGGC 60.415 50.000 0.00 0.00 0.00 5.36
873 885 2.159572 CGGCGAGTCTTTGTATTTTGGG 60.160 50.000 0.00 0.00 0.00 4.12
940 955 1.791103 GAGAGATGCGAGAGACGGGG 61.791 65.000 0.00 0.00 42.83 5.73
941 956 1.652012 GAGAGATGCGAGAGACGGG 59.348 63.158 0.00 0.00 42.83 5.28
942 957 1.652012 GGAGAGATGCGAGAGACGG 59.348 63.158 0.00 0.00 42.83 4.79
943 958 1.278337 CGGAGAGATGCGAGAGACG 59.722 63.158 0.00 0.00 45.66 4.18
944 959 1.008995 GCGGAGAGATGCGAGAGAC 60.009 63.158 0.00 0.00 0.00 3.36
945 960 1.153066 AGCGGAGAGATGCGAGAGA 60.153 57.895 0.00 0.00 35.87 3.10
994 1552 1.854939 TCCTTCTACGTCCATCCCCTA 59.145 52.381 0.00 0.00 0.00 3.53
1073 1634 4.719369 ACGAGAAGCCACGGTCGC 62.719 66.667 0.00 0.00 35.83 5.19
1080 1641 2.915659 ACCACCGACGAGAAGCCA 60.916 61.111 0.00 0.00 0.00 4.75
1145 1706 2.760385 CCGTCCTCCTGTCCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
1226 1787 1.203313 GCGCACAAGTACAACGGAC 59.797 57.895 0.30 0.00 0.00 4.79
1245 1806 1.616620 CGCGCGTTAACCACTAAGTA 58.383 50.000 24.19 0.00 0.00 2.24
1308 1869 0.037590 TAGTTTGATGGGTGCCGCTT 59.962 50.000 0.00 0.00 0.00 4.68
1331 1892 7.054491 CGGAAGGGAATTATGAAATGGAATT 57.946 36.000 0.00 0.00 38.98 2.17
1362 1923 2.871096 AAATAGGAACAGCAACGGGA 57.129 45.000 0.00 0.00 0.00 5.14
1396 1957 3.309410 GCAGATCAGCAGCTAAACTTCTC 59.691 47.826 5.05 0.00 0.00 2.87
1406 1967 1.194997 GATGAATCGCAGATCAGCAGC 59.805 52.381 10.95 0.41 45.12 5.25
1407 1968 2.732500 GAGATGAATCGCAGATCAGCAG 59.267 50.000 10.95 3.53 45.12 4.24
1408 1969 2.547430 GGAGATGAATCGCAGATCAGCA 60.547 50.000 10.95 0.00 45.12 4.41
1437 1998 9.981114 AAAACACCAGTCCAGAAATAAATAAAG 57.019 29.630 0.00 0.00 0.00 1.85
1455 2018 5.835819 TCATCTAACCCAAATCAAAACACCA 59.164 36.000 0.00 0.00 0.00 4.17
1465 2028 7.515514 AGGTGAGATCTATCATCTAACCCAAAT 59.484 37.037 12.85 0.00 46.52 2.32
1489 2052 0.393537 GTCATCCCTGCACCAAGAGG 60.394 60.000 0.00 0.00 42.21 3.69
1494 2057 0.915872 AGATGGTCATCCCTGCACCA 60.916 55.000 7.28 0.00 44.36 4.17
1495 2058 1.071385 CTAGATGGTCATCCCTGCACC 59.929 57.143 7.28 0.00 38.58 5.01
1496 2059 1.071385 CCTAGATGGTCATCCCTGCAC 59.929 57.143 7.28 0.00 38.58 4.57
1526 2106 6.025896 GGCAAATCGATATAATGCATCACAG 58.974 40.000 20.07 0.00 38.73 3.66
1565 2145 3.251004 GTGGCAAGAAGACAACGATCTTT 59.749 43.478 0.00 0.00 39.08 2.52
1609 2190 5.484715 CGTCTACTAGACCAAAATGGGAAA 58.515 41.667 10.14 0.00 43.37 3.13
1626 2207 3.724295 AGCGAAAATCAAAGCGTCTAC 57.276 42.857 0.00 0.00 34.34 2.59
1635 2216 4.517285 AGCTCATCCTAAGCGAAAATCAA 58.483 39.130 0.00 0.00 44.59 2.57
1645 2228 4.583871 AGTGAACCAAAGCTCATCCTAAG 58.416 43.478 0.00 0.00 0.00 2.18
1685 2268 3.458189 ACTGCAGAAGTGTTGTGTACTC 58.542 45.455 23.35 0.00 37.88 2.59
1709 2292 1.551145 GCTGAAGACTACTAGCGTGC 58.449 55.000 0.00 0.00 0.00 5.34
1964 2551 4.033129 CCATAAAACCATTGCGCAGAAATG 59.967 41.667 11.31 12.09 35.26 2.32
1971 2558 2.645730 TGTCCATAAAACCATTGCGC 57.354 45.000 0.00 0.00 0.00 6.09
1972 2559 7.769272 ATAAAATGTCCATAAAACCATTGCG 57.231 32.000 0.00 0.00 0.00 4.85
2093 3924 3.255149 CCACTTTGCTGCATCTCTTCTTT 59.745 43.478 1.84 0.00 0.00 2.52
2145 3976 8.891501 ACCTTATTTTCTTCTTCCTCTTCCTTA 58.108 33.333 0.00 0.00 0.00 2.69
2164 3995 4.785376 AGTCTTGGAGGATGTGACCTTATT 59.215 41.667 0.00 0.00 40.73 1.40
2211 4042 4.514441 CCAGATAATGAGTAGCTTGCCTTG 59.486 45.833 0.00 0.00 0.00 3.61
2411 4245 2.779755 TGCATTTCCCACAGTATCGT 57.220 45.000 0.00 0.00 0.00 3.73
2437 4271 1.286570 CACACATGCACGCACCATT 59.713 52.632 0.00 0.00 0.00 3.16
2485 4319 2.668279 GCAGTAAATGGTTGGCACTTCG 60.668 50.000 0.00 0.00 0.00 3.79
2560 4395 3.308595 CCGCGTTGATTTCAGTATTAGCA 59.691 43.478 4.92 0.00 0.00 3.49
2602 4437 7.277539 GCAATATAGAGATGCAGTAGGACATTC 59.722 40.741 0.00 0.00 39.81 2.67
2718 4557 5.584251 GGAAGATTTCAAAGTTTTGGTTGCA 59.416 36.000 4.89 0.00 38.66 4.08
2719 4558 5.007626 GGGAAGATTTCAAAGTTTTGGTTGC 59.992 40.000 4.89 0.00 38.66 4.17
2999 4839 5.163571 GGGAAAAAGCAGAAGAGGATCATTC 60.164 44.000 0.00 0.00 37.82 2.67
3006 4846 3.244700 TGAGAGGGAAAAAGCAGAAGAGG 60.245 47.826 0.00 0.00 0.00 3.69
3164 5005 6.496144 AGTATACGGGCCTCTAATTTCTTT 57.504 37.500 0.84 0.00 0.00 2.52
3179 5028 6.373774 CCTAGAACACCATACCTAGTATACGG 59.626 46.154 0.00 0.00 0.00 4.02
3305 5160 3.259374 ACCAATAGATACGCTCATCAGGG 59.741 47.826 0.00 0.00 38.57 4.45
3462 5343 0.179037 GGCAGCAGATGAGGCACATA 60.179 55.000 0.00 0.00 39.56 2.29
3564 5445 5.163216 ACCCTTTGAATGAAAATTCTTGCCA 60.163 36.000 0.63 0.00 0.00 4.92
3818 7240 7.803659 GGTCACTTCTACTAAATGTTGCTTTTC 59.196 37.037 0.00 0.00 0.00 2.29
3885 8834 2.233186 AGCCTTCCGTACTGTCTTTACC 59.767 50.000 0.00 0.00 0.00 2.85
3959 8910 7.039152 AGTGAATTAGATCATCATCACCGAGAT 60.039 37.037 14.33 0.00 38.29 2.75
3975 8926 5.591472 CCAATGCATCTGGAAGTGAATTAGA 59.409 40.000 17.90 0.00 35.85 2.10
4246 9198 9.716531 CATCATCTAAATATGGCAAGAGTAAGA 57.283 33.333 0.00 0.00 0.00 2.10
4306 9258 2.031682 GCTTGAACTTCTGACGTGCAAT 60.032 45.455 8.02 0.00 29.94 3.56
4339 9291 4.739046 ATTTCTGCTTGAAGTTCTGACG 57.261 40.909 4.17 0.00 35.89 4.35
4414 9366 7.661847 ACCATTTCTTCTGGAACTTAGTAAGTG 59.338 37.037 16.22 4.23 38.29 3.16
4777 9731 8.132995 ACAATAAGCGCCTATTTATTAAACCAC 58.867 33.333 8.55 0.00 30.50 4.16
4788 9742 2.800544 CGTAGCACAATAAGCGCCTATT 59.199 45.455 2.29 4.16 37.01 1.73
4789 9743 2.223971 ACGTAGCACAATAAGCGCCTAT 60.224 45.455 2.29 0.00 37.01 2.57
4808 9762 0.240945 GACCCCTGCAACATCAAACG 59.759 55.000 0.00 0.00 0.00 3.60
4838 9792 5.526115 TGTATATCCCTTAAAGAACTCGCG 58.474 41.667 0.00 0.00 0.00 5.87
4860 9814 3.113322 CTGCGATGATTTCTGCCATTTG 58.887 45.455 0.00 0.00 0.00 2.32
4872 9826 1.145598 CAGTGAGGCCTGCGATGAT 59.854 57.895 12.00 0.00 0.00 2.45
4945 9899 4.120331 GCACCATGGCGAGGCAAC 62.120 66.667 13.04 0.00 0.00 4.17
5007 9961 4.700213 CCGAAAGATTTAGTGGACCACATT 59.300 41.667 26.30 9.47 36.74 2.71
5010 9964 3.671716 ACCGAAAGATTTAGTGGACCAC 58.328 45.455 17.43 17.43 34.10 4.16
5143 10097 2.613595 GCATCATACCGCATCAGAAACA 59.386 45.455 0.00 0.00 0.00 2.83
5241 10201 0.806868 AAACTGGCATGCAGATCGTG 59.193 50.000 21.36 3.35 34.80 4.35
5257 10217 7.336931 TCTGCTAGGAAATCAAGATAACCAAAC 59.663 37.037 0.00 0.00 0.00 2.93
5295 10255 3.445450 ACTATGCAACGATCAGTGAGACT 59.555 43.478 0.00 0.00 0.00 3.24
5296 10256 3.775202 ACTATGCAACGATCAGTGAGAC 58.225 45.455 0.00 0.00 0.00 3.36
5301 10261 5.689383 ACAAAAACTATGCAACGATCAGT 57.311 34.783 0.00 0.00 0.00 3.41
5317 10277 9.213799 AGCAACAGACAAATAAGAAAACAAAAA 57.786 25.926 0.00 0.00 0.00 1.94
5318 10278 8.770438 AGCAACAGACAAATAAGAAAACAAAA 57.230 26.923 0.00 0.00 0.00 2.44
5319 10279 8.250332 AGAGCAACAGACAAATAAGAAAACAAA 58.750 29.630 0.00 0.00 0.00 2.83
5353 10313 8.665685 CCTGGTTAAATTAGACATCTGTTACAC 58.334 37.037 0.00 0.00 0.00 2.90
5400 10360 1.616374 TGTCTCACATGGCACTTCGTA 59.384 47.619 0.00 0.00 0.00 3.43
5551 10511 7.851228 ACTTTCCATACTACATGAAGTCATCA 58.149 34.615 0.00 0.00 43.67 3.07
5583 10543 6.692232 GTGATACGCACCATTAGAACTATC 57.308 41.667 0.00 0.00 41.78 2.08
5598 10558 3.126343 CCCCAAAACAAGTAGTGATACGC 59.874 47.826 0.00 0.00 0.00 4.42
5688 10648 0.316522 AGCATCTGTAGCATCGCGAT 59.683 50.000 17.62 17.62 0.00 4.58
5706 10666 5.045869 TGAGGTGTCCCTTTATCCTTAACAG 60.046 44.000 0.00 0.00 42.86 3.16
5707 10667 4.847512 TGAGGTGTCCCTTTATCCTTAACA 59.152 41.667 0.00 0.00 42.86 2.41
5721 10681 5.741011 TGGTAACAGATTTATGAGGTGTCC 58.259 41.667 0.00 0.00 46.17 4.02
5772 10732 4.491676 AGCACGACGTTGATAGTACAAAT 58.508 39.130 10.51 0.00 0.00 2.32
5791 10751 1.202592 TGACGCACCTTTCTGTTAGCA 60.203 47.619 0.00 0.00 0.00 3.49
5808 10768 4.775236 AGGATCACTGGCTTTATCTTGAC 58.225 43.478 0.00 0.00 0.00 3.18
5839 10799 7.123247 CCAATCTCATCAAATTTACCAGGAACT 59.877 37.037 0.00 0.00 43.88 3.01
5840 10800 7.260603 CCAATCTCATCAAATTTACCAGGAAC 58.739 38.462 0.00 0.00 0.00 3.62
5853 10813 5.393352 CGAATTCCTTTGCCAATCTCATCAA 60.393 40.000 0.00 0.00 0.00 2.57
6236 11197 5.891551 ACTGTGTTTGGGAAGATTTAACACT 59.108 36.000 14.93 0.00 45.32 3.55
6256 11217 4.397420 TCACAATTAATGAGGCACACTGT 58.603 39.130 0.00 0.00 0.00 3.55
6257 11218 5.106038 ACATCACAATTAATGAGGCACACTG 60.106 40.000 4.03 0.00 31.05 3.66
6272 11235 7.707624 ACACATAAGGAAATGACATCACAAT 57.292 32.000 0.00 0.00 0.00 2.71
6358 11321 1.002624 GACACCCGGCAGGAATGAA 60.003 57.895 3.68 0.00 41.02 2.57
6407 11370 5.707298 TGCTAAATTCAAAAGAGAGTGAGGG 59.293 40.000 0.00 0.00 0.00 4.30
6436 11399 4.168101 AGGAAATGGGTACAGTCTTGAGA 58.832 43.478 0.00 0.00 0.00 3.27
6503 11466 3.297134 ACACACTCACCCACATTTTCT 57.703 42.857 0.00 0.00 0.00 2.52
6569 11532 7.268586 TGCTAACCTCTAGCTTATCTTCTTTG 58.731 38.462 0.00 0.00 40.95 2.77
6599 11562 2.483583 AGCGCGATTTTCAACAACAA 57.516 40.000 12.10 0.00 0.00 2.83
6604 11567 4.316375 TGTAGTAAGCGCGATTTTCAAC 57.684 40.909 17.40 7.36 0.00 3.18
6606 11569 4.390603 ACAATGTAGTAAGCGCGATTTTCA 59.609 37.500 17.40 10.09 0.00 2.69
6614 11577 5.522460 TCCTCAAATACAATGTAGTAAGCGC 59.478 40.000 0.00 0.00 0.00 5.92
6633 11649 5.005740 CAGACCAGTCATCAATTTTCCTCA 58.994 41.667 0.00 0.00 0.00 3.86
6719 11736 1.871039 CACGTGACGTCCCAAGAATTT 59.129 47.619 10.90 0.00 38.32 1.82
6865 11890 0.595095 CTTTTCCTCTGCAGTGCCAC 59.405 55.000 14.67 0.00 0.00 5.01
6869 11894 2.479566 TAGGCTTTTCCTCTGCAGTG 57.520 50.000 14.67 11.58 43.20 3.66
6931 11956 1.827789 GGCAGGCAAACCAGTCACA 60.828 57.895 0.00 0.00 39.06 3.58
6944 11969 0.179078 GAGAGCAGTCTGATGGCAGG 60.179 60.000 3.32 0.00 42.53 4.85
6945 11970 0.825410 AGAGAGCAGTCTGATGGCAG 59.175 55.000 3.32 0.00 43.67 4.85
6946 11971 0.535797 CAGAGAGCAGTCTGATGGCA 59.464 55.000 3.32 0.00 46.02 4.92
6947 11972 0.179078 CCAGAGAGCAGTCTGATGGC 60.179 60.000 15.11 0.00 46.02 4.40
6948 11973 0.464870 CCCAGAGAGCAGTCTGATGG 59.535 60.000 15.11 6.81 46.02 3.51
7122 12166 4.900635 AACAACCATAAATCGCATCTCC 57.099 40.909 0.00 0.00 0.00 3.71
7178 12222 4.755123 GGATTGGGGATCACATAGTTAACG 59.245 45.833 0.00 0.00 36.43 3.18
7180 12224 5.669904 TGAGGATTGGGGATCACATAGTTAA 59.330 40.000 0.00 0.00 36.43 2.01
7219 12263 2.478134 GCTCCTACTGATTTGCTATGCG 59.522 50.000 0.00 0.00 0.00 4.73
7270 12366 7.151308 AGATTGATCCGTCTTATCAGTGATTC 58.849 38.462 11.68 0.56 34.93 2.52
7276 12372 7.063191 CAGCATAAGATTGATCCGTCTTATCAG 59.937 40.741 19.19 13.59 42.67 2.90
7291 12387 6.579666 AATTGACACACACAGCATAAGATT 57.420 33.333 0.00 0.00 0.00 2.40
7302 12398 5.869753 ATCTGCTCTAAATTGACACACAC 57.130 39.130 0.00 0.00 0.00 3.82
7345 12441 2.158449 GCCGGCGATCAGAATAAGATTG 59.842 50.000 12.58 0.00 0.00 2.67
7347 12443 1.338200 GGCCGGCGATCAGAATAAGAT 60.338 52.381 22.54 0.00 0.00 2.40
7348 12444 0.033504 GGCCGGCGATCAGAATAAGA 59.966 55.000 22.54 0.00 0.00 2.10
7349 12445 0.034059 AGGCCGGCGATCAGAATAAG 59.966 55.000 22.54 0.00 0.00 1.73
7350 12446 0.249868 CAGGCCGGCGATCAGAATAA 60.250 55.000 22.54 0.00 0.00 1.40
7351 12447 1.367471 CAGGCCGGCGATCAGAATA 59.633 57.895 22.54 0.00 0.00 1.75
7352 12448 2.109799 CAGGCCGGCGATCAGAAT 59.890 61.111 22.54 0.00 0.00 2.40
7354 12450 3.371097 GAACAGGCCGGCGATCAGA 62.371 63.158 22.54 0.00 0.00 3.27
7376 13068 0.250038 CCATCTGGAATCATCGGCGT 60.250 55.000 6.85 0.00 37.39 5.68
7377 13069 0.250038 ACCATCTGGAATCATCGGCG 60.250 55.000 0.00 0.00 38.94 6.46
7379 13071 1.417517 TGGACCATCTGGAATCATCGG 59.582 52.381 2.55 0.00 38.94 4.18
7463 13180 4.314440 GGGACGGTGTGAGCTGCA 62.314 66.667 1.02 0.00 0.00 4.41
7525 13243 3.810310 AACAACGGATCATCTCCTCTC 57.190 47.619 0.00 0.00 42.47 3.20
7722 13447 2.146342 CCTCAGGTGTACAAACTGCTG 58.854 52.381 19.04 14.70 32.42 4.41
7752 13477 2.602878 TCAAGTCTATCGACGGCAAAC 58.397 47.619 0.00 0.00 44.93 2.93
7774 13499 3.470888 CCCGATGACCGCTCCCTT 61.471 66.667 0.00 0.00 36.84 3.95
7792 13517 2.345876 CAAAATCCAATGGGTTTCGCC 58.654 47.619 11.39 0.00 34.93 5.54
7793 13518 1.731709 GCAAAATCCAATGGGTTTCGC 59.268 47.619 11.39 8.21 34.93 4.70
7794 13519 2.028203 AGGCAAAATCCAATGGGTTTCG 60.028 45.455 11.39 0.52 34.93 3.46
7795 13520 3.701205 AGGCAAAATCCAATGGGTTTC 57.299 42.857 11.39 0.00 34.93 2.78
7796 13521 3.753815 CAAGGCAAAATCCAATGGGTTT 58.246 40.909 4.37 4.37 34.93 3.27
7797 13522 2.552809 GCAAGGCAAAATCCAATGGGTT 60.553 45.455 0.00 0.00 34.93 4.11
7798 13523 1.003464 GCAAGGCAAAATCCAATGGGT 59.997 47.619 0.00 0.00 34.93 4.51
7799 13524 1.279846 AGCAAGGCAAAATCCAATGGG 59.720 47.619 0.00 0.00 0.00 4.00
7800 13525 2.773993 AGCAAGGCAAAATCCAATGG 57.226 45.000 0.00 0.00 0.00 3.16
7801 13526 5.240121 AGTTTAGCAAGGCAAAATCCAATG 58.760 37.500 0.00 0.00 0.00 2.82
7802 13527 5.011943 TGAGTTTAGCAAGGCAAAATCCAAT 59.988 36.000 0.00 0.00 29.83 3.16
7803 13528 4.343526 TGAGTTTAGCAAGGCAAAATCCAA 59.656 37.500 0.00 0.00 29.83 3.53
7804 13529 3.894427 TGAGTTTAGCAAGGCAAAATCCA 59.106 39.130 0.00 0.00 29.83 3.41
7805 13530 4.519540 TGAGTTTAGCAAGGCAAAATCC 57.480 40.909 0.00 0.00 29.83 3.01
7806 13531 5.105063 GGATGAGTTTAGCAAGGCAAAATC 58.895 41.667 0.00 0.00 30.74 2.17
7807 13532 4.774200 AGGATGAGTTTAGCAAGGCAAAAT 59.226 37.500 0.00 0.00 0.00 1.82
7808 13533 4.151883 AGGATGAGTTTAGCAAGGCAAAA 58.848 39.130 0.00 0.00 0.00 2.44
7809 13534 3.758554 GAGGATGAGTTTAGCAAGGCAAA 59.241 43.478 0.00 0.00 0.00 3.68
7810 13535 3.244875 TGAGGATGAGTTTAGCAAGGCAA 60.245 43.478 0.00 0.00 0.00 4.52
7811 13536 2.305635 TGAGGATGAGTTTAGCAAGGCA 59.694 45.455 0.00 0.00 0.00 4.75
7812 13537 2.680339 GTGAGGATGAGTTTAGCAAGGC 59.320 50.000 0.00 0.00 0.00 4.35
7813 13538 3.942829 TGTGAGGATGAGTTTAGCAAGG 58.057 45.455 0.00 0.00 0.00 3.61
7814 13539 5.240891 TCTTGTGAGGATGAGTTTAGCAAG 58.759 41.667 0.00 0.00 34.05 4.01
7815 13540 5.227569 TCTTGTGAGGATGAGTTTAGCAA 57.772 39.130 0.00 0.00 0.00 3.91
7816 13541 4.890158 TCTTGTGAGGATGAGTTTAGCA 57.110 40.909 0.00 0.00 0.00 3.49
7817 13542 6.560253 TTTTCTTGTGAGGATGAGTTTAGC 57.440 37.500 0.00 0.00 0.00 3.09
7818 13543 7.118390 ACGATTTTCTTGTGAGGATGAGTTTAG 59.882 37.037 0.00 0.00 0.00 1.85
7819 13544 6.934645 ACGATTTTCTTGTGAGGATGAGTTTA 59.065 34.615 0.00 0.00 0.00 2.01
7820 13545 5.765182 ACGATTTTCTTGTGAGGATGAGTTT 59.235 36.000 0.00 0.00 0.00 2.66
7821 13546 5.308825 ACGATTTTCTTGTGAGGATGAGTT 58.691 37.500 0.00 0.00 0.00 3.01
7822 13547 4.899502 ACGATTTTCTTGTGAGGATGAGT 58.100 39.130 0.00 0.00 0.00 3.41
7823 13548 6.968131 TTACGATTTTCTTGTGAGGATGAG 57.032 37.500 0.00 0.00 0.00 2.90
7824 13549 6.148811 GGTTTACGATTTTCTTGTGAGGATGA 59.851 38.462 0.00 0.00 0.00 2.92
7825 13550 6.149474 AGGTTTACGATTTTCTTGTGAGGATG 59.851 38.462 0.00 0.00 0.00 3.51
7826 13551 6.238648 AGGTTTACGATTTTCTTGTGAGGAT 58.761 36.000 0.00 0.00 0.00 3.24
7827 13552 5.617252 AGGTTTACGATTTTCTTGTGAGGA 58.383 37.500 0.00 0.00 0.00 3.71
7828 13553 5.941948 AGGTTTACGATTTTCTTGTGAGG 57.058 39.130 0.00 0.00 0.00 3.86
7829 13554 6.856426 GGAAAGGTTTACGATTTTCTTGTGAG 59.144 38.462 0.00 0.00 31.83 3.51
7830 13555 6.238814 GGGAAAGGTTTACGATTTTCTTGTGA 60.239 38.462 0.00 0.00 31.83 3.58
7831 13556 5.918576 GGGAAAGGTTTACGATTTTCTTGTG 59.081 40.000 0.00 0.00 31.83 3.33
7832 13557 5.278120 CGGGAAAGGTTTACGATTTTCTTGT 60.278 40.000 0.00 0.00 31.83 3.16
7833 13558 5.151389 CGGGAAAGGTTTACGATTTTCTTG 58.849 41.667 0.00 0.00 31.83 3.02
7834 13559 4.823442 ACGGGAAAGGTTTACGATTTTCTT 59.177 37.500 0.00 0.00 31.83 2.52
7835 13560 4.392047 ACGGGAAAGGTTTACGATTTTCT 58.608 39.130 0.00 0.00 31.83 2.52
7836 13561 4.754372 ACGGGAAAGGTTTACGATTTTC 57.246 40.909 0.00 0.00 0.00 2.29
7837 13562 4.793678 GCAACGGGAAAGGTTTACGATTTT 60.794 41.667 0.00 0.00 0.00 1.82
7838 13563 3.304861 GCAACGGGAAAGGTTTACGATTT 60.305 43.478 0.00 0.00 0.00 2.17
7839 13564 2.227149 GCAACGGGAAAGGTTTACGATT 59.773 45.455 0.00 0.00 0.00 3.34
7840 13565 1.808343 GCAACGGGAAAGGTTTACGAT 59.192 47.619 0.00 0.00 0.00 3.73
7841 13566 1.228533 GCAACGGGAAAGGTTTACGA 58.771 50.000 0.00 0.00 0.00 3.43
7842 13567 0.239082 GGCAACGGGAAAGGTTTACG 59.761 55.000 0.00 0.00 0.00 3.18
7843 13568 1.320507 TGGCAACGGGAAAGGTTTAC 58.679 50.000 0.00 0.00 42.51 2.01
7844 13569 2.164338 GATGGCAACGGGAAAGGTTTA 58.836 47.619 0.00 0.00 42.51 2.01
7845 13570 0.966179 GATGGCAACGGGAAAGGTTT 59.034 50.000 0.00 0.00 42.51 3.27
7846 13571 0.178975 TGATGGCAACGGGAAAGGTT 60.179 50.000 0.00 0.00 42.51 3.50
7847 13572 0.893727 GTGATGGCAACGGGAAAGGT 60.894 55.000 0.00 0.00 42.51 3.50
7848 13573 0.609131 AGTGATGGCAACGGGAAAGG 60.609 55.000 0.00 0.00 42.51 3.11
7849 13574 2.107950 TAGTGATGGCAACGGGAAAG 57.892 50.000 0.00 0.00 42.51 2.62
7850 13575 2.364632 CATAGTGATGGCAACGGGAAA 58.635 47.619 0.00 0.00 42.51 3.13
7851 13576 2.016604 GCATAGTGATGGCAACGGGAA 61.017 52.381 0.00 0.00 42.51 3.97
7852 13577 0.463654 GCATAGTGATGGCAACGGGA 60.464 55.000 0.00 0.00 42.51 5.14
7853 13578 0.747644 TGCATAGTGATGGCAACGGG 60.748 55.000 0.00 0.00 42.51 5.28
7854 13579 1.002142 CATGCATAGTGATGGCAACGG 60.002 52.381 0.00 0.00 42.51 4.44
7855 13580 1.002142 CCATGCATAGTGATGGCAACG 60.002 52.381 0.00 0.00 42.51 4.10
7856 13581 1.338973 CCCATGCATAGTGATGGCAAC 59.661 52.381 0.00 0.00 38.28 4.17
7857 13582 1.694844 CCCATGCATAGTGATGGCAA 58.305 50.000 0.00 0.00 38.28 4.52
7858 13583 0.178984 CCCCATGCATAGTGATGGCA 60.179 55.000 0.00 0.00 38.28 4.92
7859 13584 1.530013 GCCCCATGCATAGTGATGGC 61.530 60.000 0.00 1.15 38.28 4.40
7860 13585 0.111832 AGCCCCATGCATAGTGATGG 59.888 55.000 0.00 0.00 44.83 3.51
7861 13586 2.039480 ACTAGCCCCATGCATAGTGATG 59.961 50.000 0.00 0.00 44.83 3.07
7862 13587 2.342659 ACTAGCCCCATGCATAGTGAT 58.657 47.619 0.00 0.00 44.83 3.06
7863 13588 1.806496 ACTAGCCCCATGCATAGTGA 58.194 50.000 0.00 0.00 44.83 3.41
7864 13589 2.645838 AACTAGCCCCATGCATAGTG 57.354 50.000 0.00 0.00 44.83 2.74
7865 13590 3.555966 GAAAACTAGCCCCATGCATAGT 58.444 45.455 0.00 0.00 44.83 2.12
7866 13591 2.887152 GGAAAACTAGCCCCATGCATAG 59.113 50.000 0.00 0.00 44.83 2.23
7867 13592 2.748132 CGGAAAACTAGCCCCATGCATA 60.748 50.000 0.00 0.00 44.83 3.14
7868 13593 1.780503 GGAAAACTAGCCCCATGCAT 58.219 50.000 0.00 0.00 44.83 3.96
7869 13594 0.679640 CGGAAAACTAGCCCCATGCA 60.680 55.000 0.00 0.00 44.83 3.96
7870 13595 0.679960 ACGGAAAACTAGCCCCATGC 60.680 55.000 0.00 0.00 41.71 4.06
7871 13596 1.379527 GACGGAAAACTAGCCCCATG 58.620 55.000 0.00 0.00 0.00 3.66
7872 13597 0.255033 GGACGGAAAACTAGCCCCAT 59.745 55.000 0.00 0.00 0.00 4.00
7873 13598 1.681076 GGACGGAAAACTAGCCCCA 59.319 57.895 0.00 0.00 0.00 4.96
7874 13599 1.449070 CGGACGGAAAACTAGCCCC 60.449 63.158 0.00 0.00 0.00 5.80
7875 13600 0.738762 GACGGACGGAAAACTAGCCC 60.739 60.000 0.00 0.00 0.00 5.19
7876 13601 0.738762 GGACGGACGGAAAACTAGCC 60.739 60.000 0.00 0.00 0.00 3.93
7877 13602 0.245813 AGGACGGACGGAAAACTAGC 59.754 55.000 0.00 0.00 0.00 3.42
7878 13603 1.817447 AGAGGACGGACGGAAAACTAG 59.183 52.381 0.00 0.00 0.00 2.57
7879 13604 1.915141 AGAGGACGGACGGAAAACTA 58.085 50.000 0.00 0.00 0.00 2.24
7880 13605 1.915141 TAGAGGACGGACGGAAAACT 58.085 50.000 0.00 0.00 0.00 2.66
7881 13606 2.730550 TTAGAGGACGGACGGAAAAC 57.269 50.000 0.00 0.00 0.00 2.43
7882 13607 2.629617 AGTTTAGAGGACGGACGGAAAA 59.370 45.455 0.00 0.00 0.00 2.29
7883 13608 2.229784 GAGTTTAGAGGACGGACGGAAA 59.770 50.000 0.00 0.00 0.00 3.13
7884 13609 1.815003 GAGTTTAGAGGACGGACGGAA 59.185 52.381 0.00 0.00 0.00 4.30
7885 13610 1.271543 TGAGTTTAGAGGACGGACGGA 60.272 52.381 0.00 0.00 0.00 4.69
7886 13611 1.171308 TGAGTTTAGAGGACGGACGG 58.829 55.000 0.00 0.00 0.00 4.79
7887 13612 2.539142 CGATGAGTTTAGAGGACGGACG 60.539 54.545 0.00 0.00 0.00 4.79
7888 13613 2.223525 CCGATGAGTTTAGAGGACGGAC 60.224 54.545 0.00 0.00 41.30 4.79
7889 13614 2.022195 CCGATGAGTTTAGAGGACGGA 58.978 52.381 0.00 0.00 41.30 4.69
7890 13615 1.067212 CCCGATGAGTTTAGAGGACGG 59.933 57.143 0.00 0.00 39.02 4.79
7891 13616 1.749634 ACCCGATGAGTTTAGAGGACG 59.250 52.381 0.00 0.00 0.00 4.79
7892 13617 3.522553 CAACCCGATGAGTTTAGAGGAC 58.477 50.000 0.00 0.00 0.00 3.85
7893 13618 2.500098 CCAACCCGATGAGTTTAGAGGA 59.500 50.000 0.00 0.00 0.00 3.71
7894 13619 2.236395 ACCAACCCGATGAGTTTAGAGG 59.764 50.000 0.00 0.00 0.00 3.69
7895 13620 3.262420 CACCAACCCGATGAGTTTAGAG 58.738 50.000 0.00 0.00 0.00 2.43
7896 13621 2.027561 CCACCAACCCGATGAGTTTAGA 60.028 50.000 0.00 0.00 0.00 2.10
7897 13622 2.356135 CCACCAACCCGATGAGTTTAG 58.644 52.381 0.00 0.00 0.00 1.85
7898 13623 1.003812 CCCACCAACCCGATGAGTTTA 59.996 52.381 0.00 0.00 0.00 2.01
7899 13624 0.251165 CCCACCAACCCGATGAGTTT 60.251 55.000 0.00 0.00 0.00 2.66
7900 13625 1.131303 TCCCACCAACCCGATGAGTT 61.131 55.000 0.00 0.00 0.00 3.01
7901 13626 1.131303 TTCCCACCAACCCGATGAGT 61.131 55.000 0.00 0.00 0.00 3.41
7902 13627 0.676782 GTTCCCACCAACCCGATGAG 60.677 60.000 0.00 0.00 0.00 2.90
7903 13628 1.377229 GTTCCCACCAACCCGATGA 59.623 57.895 0.00 0.00 0.00 2.92
7904 13629 1.677633 GGTTCCCACCAACCCGATG 60.678 63.158 0.00 0.00 43.61 3.84
7905 13630 0.548197 TAGGTTCCCACCAACCCGAT 60.548 55.000 0.00 0.00 46.39 4.18
7906 13631 1.152074 TAGGTTCCCACCAACCCGA 60.152 57.895 0.00 0.00 46.39 5.14
7907 13632 1.002990 GTAGGTTCCCACCAACCCG 60.003 63.158 0.00 0.00 46.39 5.28
7908 13633 1.381463 GGTAGGTTCCCACCAACCC 59.619 63.158 1.75 0.00 46.39 4.11
7913 13638 0.321919 GTTTCCGGTAGGTTCCCACC 60.322 60.000 0.00 0.00 44.67 4.61
7914 13639 0.321919 GGTTTCCGGTAGGTTCCCAC 60.322 60.000 0.00 0.00 39.05 4.61
7915 13640 1.491274 GGGTTTCCGGTAGGTTCCCA 61.491 60.000 0.00 0.00 40.01 4.37
7916 13641 1.300963 GGGTTTCCGGTAGGTTCCC 59.699 63.158 0.00 2.77 39.05 3.97
7917 13642 2.068915 TGGGTTTCCGGTAGGTTCC 58.931 57.895 0.00 0.00 39.05 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.